HEADER PROTEIN FIBRIL 08-FEB-24 8YAC TITLE FUNES-INDUCED ORB2 AMYLOID LIKE ENDOGENOUS ORB2 AMYLOID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATIONAL REGULATOR ORB2; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227 KEYWDS TRANSLATOR REGULATOR, CHAPERONE, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR R.HERVAS,K.SI REVDAT 1 03-SEP-25 8YAC 0 JRNL AUTH K.PATTON,Y.YI,R.BURT,K.K.S.NG,M.MUKHI,S.KHAKI,R.HERVAS,K.SI JRNL TITL J-DOMAIN PROTEIN FUNES ENHANCES MEMORY BY FACILITATING JRNL TITL 2 AMYLOID FORMATION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, GCTF, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 7807 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8YAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045263. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : FUNES-INDUCED ORB2 AMYLOID REMARK 245 FILAMENT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.25 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.15 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4900.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 193 54.85 -91.17 REMARK 500 GLN B 193 54.85 -91.25 REMARK 500 GLN C 193 54.88 -91.23 REMARK 500 GLN D 193 54.98 -91.25 REMARK 500 GLN E 193 54.89 -91.18 REMARK 500 GLN F 193 54.87 -91.25 REMARK 500 GLN G 193 54.84 -91.21 REMARK 500 GLN H 193 54.94 -91.22 REMARK 500 GLN I 193 54.87 -91.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-39095 RELATED DB: EMDB REMARK 900 FUNES-INDUCED ORB2 AMYLOID LIKE ENDOGENOUS ORB2 AMYLOID DBREF 8YAC A 176 206 UNP Q9VSR3 ORB2_DROME 176 206 DBREF 8YAC B 176 206 UNP Q9VSR3 ORB2_DROME 176 206 DBREF 8YAC C 176 206 UNP Q9VSR3 ORB2_DROME 176 206 DBREF 8YAC D 176 206 UNP Q9VSR3 ORB2_DROME 176 206 DBREF 8YAC E 176 206 UNP Q9VSR3 ORB2_DROME 176 206 DBREF 8YAC F 176 206 UNP Q9VSR3 ORB2_DROME 176 206 DBREF 8YAC G 176 206 UNP Q9VSR3 ORB2_DROME 176 206 DBREF 8YAC H 176 206 UNP Q9VSR3 ORB2_DROME 176 206 DBREF 8YAC I 176 206 UNP Q9VSR3 ORB2_DROME 176 206 SEQRES 1 A 31 GLN LEU HIS GLN GLN GLN HIS GLN GLN GLN HIS GLN GLN SEQRES 2 A 31 HIS GLN GLN HIS GLN GLN GLN GLN GLN LEU HIS GLN HIS SEQRES 3 A 31 GLN GLN GLN LEU SER SEQRES 1 B 31 GLN LEU HIS GLN GLN GLN HIS GLN GLN GLN HIS GLN GLN SEQRES 2 B 31 HIS GLN GLN HIS GLN GLN GLN GLN GLN LEU HIS GLN HIS SEQRES 3 B 31 GLN GLN GLN LEU SER SEQRES 1 C 31 GLN LEU HIS GLN GLN GLN HIS GLN GLN GLN HIS GLN GLN SEQRES 2 C 31 HIS GLN GLN HIS GLN GLN GLN GLN GLN LEU HIS GLN HIS SEQRES 3 C 31 GLN GLN GLN LEU SER SEQRES 1 D 31 GLN LEU HIS GLN GLN GLN HIS GLN GLN GLN HIS GLN GLN SEQRES 2 D 31 HIS GLN GLN HIS GLN GLN GLN GLN GLN LEU HIS GLN HIS SEQRES 3 D 31 GLN GLN GLN LEU SER SEQRES 1 E 31 GLN LEU HIS GLN GLN GLN HIS GLN GLN GLN HIS GLN GLN SEQRES 2 E 31 HIS GLN GLN HIS GLN GLN GLN GLN GLN LEU HIS GLN HIS SEQRES 3 E 31 GLN GLN GLN LEU SER SEQRES 1 F 31 GLN LEU HIS GLN GLN GLN HIS GLN GLN GLN HIS GLN GLN SEQRES 2 F 31 HIS GLN GLN HIS GLN GLN GLN GLN GLN LEU HIS GLN HIS SEQRES 3 F 31 GLN GLN GLN LEU SER SEQRES 1 G 31 GLN LEU HIS GLN GLN GLN HIS GLN GLN GLN HIS GLN GLN SEQRES 2 G 31 HIS GLN GLN HIS GLN GLN GLN GLN GLN LEU HIS GLN HIS SEQRES 3 G 31 GLN GLN GLN LEU SER SEQRES 1 H 31 GLN LEU HIS GLN GLN GLN HIS GLN GLN GLN HIS GLN GLN SEQRES 2 H 31 HIS GLN GLN HIS GLN GLN GLN GLN GLN LEU HIS GLN HIS SEQRES 3 H 31 GLN GLN GLN LEU SER SEQRES 1 I 31 GLN LEU HIS GLN GLN GLN HIS GLN GLN GLN HIS GLN GLN SEQRES 2 I 31 HIS GLN GLN HIS GLN GLN GLN GLN GLN LEU HIS GLN HIS SEQRES 3 I 31 GLN GLN GLN LEU SER SHEET 1 AA1 3 GLN F 180 HIS F 186 0 SHEET 2 AA1 3 LEU A 177 HIS A 186 1 N HIS A 186 O GLN F 185 SHEET 3 AA1 3 LEU G 177 HIS G 186 1 O HIS G 178 N LEU A 177 SHEET 1 AA2 3 GLN F 197 GLN F 204 0 SHEET 2 AA2 3 GLN A 197 GLN A 204 1 N HIS A 199 O LEU F 198 SHEET 3 AA2 3 GLN G 197 LEU G 198 1 O GLN G 197 N LEU A 198 SHEET 1 AA3 3 GLN F 197 GLN F 204 0 SHEET 2 AA3 3 GLN A 197 GLN A 204 1 N HIS A 199 O LEU F 198 SHEET 3 AA3 3 HIS G 201 GLN G 204 1 O GLN G 203 N GLN A 202 SHEET 1 AA4 3 GLN D 180 HIS D 186 0 SHEET 2 AA4 3 GLN B 180 HIS B 186 1 N HIS B 186 O GLN D 185 SHEET 3 AA4 3 GLN E 180 HIS E 186 1 O HIS E 182 N GLN B 181 SHEET 1 AA5 3 GLN D 197 GLN D 204 0 SHEET 2 AA5 3 GLN B 197 GLN B 204 1 N HIS B 199 O LEU D 198 SHEET 3 AA5 3 GLN E 197 GLN E 204 1 O HIS E 199 N LEU B 198 SHEET 1 AA6 3 GLN H 180 HIS H 186 0 SHEET 2 AA6 3 LEU C 177 HIS C 186 1 N HIS C 186 O GLN H 185 SHEET 3 AA6 3 LEU I 177 HIS I 186 1 O HIS I 186 N GLN C 185 SHEET 1 AA7 3 GLN H 197 GLN H 204 0 SHEET 2 AA7 3 GLN C 197 GLN C 204 1 N HIS C 199 O LEU H 198 SHEET 3 AA7 3 GLN I 197 GLN I 204 1 O HIS I 199 N LEU C 198 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 528 SER A 206 TER 1056 SER B 206 TER 1584 SER C 206 TER 2112 SER D 206 TER 2640 SER E 206 TER 3168 SER F 206 TER 3696 SER G 206 TER 4224 SER H 206 TER 4752 SER I 206 MASTER 126 0 0 0 21 0 0 6 2529 9 0 27 END