data_4FSP # _entry.id 4FSP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FSP pdb_00004fsp 10.2210/pdb4fsp/pdb RCSB RCSB073307 ? ? WWPDB D_1000073307 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SYS . unspecified PDB 3SY7 . unspecified PDB 4FT6 . unspecified PDB 4FSO . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4FSP _pdbx_database_status.recvd_initial_deposition_date 2012-06-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eren, E.' 1 'van den Berg, B.' 2 # _citation.id primary _citation.title 'Crystal Structures of OccK Subfamily Proteins' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eren, E.' 1 ? primary 'van den Berg, B.' 2 ? # _cell.entry_id 4FSP _cell.length_a 95.892 _cell.length_b 147.810 _cell.length_c 84.513 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4FSP _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable porin' 45240.152 1 ? ? 'unp residues 23-416' ? 2 non-polymer syn '(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE' 306.438 9 ? ? ? ? 3 water nat water 18.015 159 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HHHHHHHENLYFQGLEEGFLEDSRASLALRNFYMNRDFRDGAGRAKSEEWAQGFLFDYRSGYTEGTLGVGLDLLGKLGVR LDSGAGRSGTGLLPLRDDGSAAGDYARLDATAKLRLSRSELKVGGLVPKLPTIQPNYGRLFPQVFQGALLTSGELSGLSL NLGRLTEVSQRNEAGTSDLALFNRNRRFAGAAQADRFDLAGLDYRIAPDWTGSYHYGELEQVYAQHFLGLKGRIGIAADS LESDLRLALSRDTGGARGGRIDNRSFSGSLTYRLRNGQAFGLGYQRMSGDHGFPYLEGTDPYLVNFGQYNDFAEAGESSW QLRYDCDFAPLGVPGLSLMTRYFSGHGAKPKGADGSREWERDSDLRYVLQGGALKGLGLVWRNATYRSAFSRDIDENRLY LTYELPLF ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHHHENLYFQGLEEGFLEDSRASLALRNFYMNRDFRDGAGRAKSEEWAQGFLFDYRSGYTEGTLGVGLDLLGKLGVR LDSGAGRSGTGLLPLRDDGSAAGDYARLDATAKLRLSRSELKVGGLVPKLPTIQPNYGRLFPQVFQGALLTSGELSGLSL NLGRLTEVSQRNEAGTSDLALFNRNRRFAGAAQADRFDLAGLDYRIAPDWTGSYHYGELEQVYAQHFLGLKGRIGIAADS LESDLRLALSRDTGGARGGRIDNRSFSGSLTYRLRNGQAFGLGYQRMSGDHGFPYLEGTDPYLVNFGQYNDFAEAGESSW QLRYDCDFAPLGVPGLSLMTRYFSGHGAKPKGADGSREWERDSDLRYVLQGGALKGLGLVWRNATYRSAFSRDIDENRLY LTYELPLF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLU n 1 9 ASN n 1 10 LEU n 1 11 TYR n 1 12 PHE n 1 13 GLN n 1 14 GLY n 1 15 LEU n 1 16 GLU n 1 17 GLU n 1 18 GLY n 1 19 PHE n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 SER n 1 24 ARG n 1 25 ALA n 1 26 SER n 1 27 LEU n 1 28 ALA n 1 29 LEU n 1 30 ARG n 1 31 ASN n 1 32 PHE n 1 33 TYR n 1 34 MET n 1 35 ASN n 1 36 ARG n 1 37 ASP n 1 38 PHE n 1 39 ARG n 1 40 ASP n 1 41 GLY n 1 42 ALA n 1 43 GLY n 1 44 ARG n 1 45 ALA n 1 46 LYS n 1 47 SER n 1 48 GLU n 1 49 GLU n 1 50 TRP n 1 51 ALA n 1 52 GLN n 1 53 GLY n 1 54 PHE n 1 55 LEU n 1 56 PHE n 1 57 ASP n 1 58 TYR n 1 59 ARG n 1 60 SER n 1 61 GLY n 1 62 TYR n 1 63 THR n 1 64 GLU n 1 65 GLY n 1 66 THR n 1 67 LEU n 1 68 GLY n 1 69 VAL n 1 70 GLY n 1 71 LEU n 1 72 ASP n 1 73 LEU n 1 74 LEU n 1 75 GLY n 1 76 LYS n 1 77 LEU n 1 78 GLY n 1 79 VAL n 1 80 ARG n 1 81 LEU n 1 82 ASP n 1 83 SER n 1 84 GLY n 1 85 ALA n 1 86 GLY n 1 87 ARG n 1 88 SER n 1 89 GLY n 1 90 THR n 1 91 GLY n 1 92 LEU n 1 93 LEU n 1 94 PRO n 1 95 LEU n 1 96 ARG n 1 97 ASP n 1 98 ASP n 1 99 GLY n 1 100 SER n 1 101 ALA n 1 102 ALA n 1 103 GLY n 1 104 ASP n 1 105 TYR n 1 106 ALA n 1 107 ARG n 1 108 LEU n 1 109 ASP n 1 110 ALA n 1 111 THR n 1 112 ALA n 1 113 LYS n 1 114 LEU n 1 115 ARG n 1 116 LEU n 1 117 SER n 1 118 ARG n 1 119 SER n 1 120 GLU n 1 121 LEU n 1 122 LYS n 1 123 VAL n 1 124 GLY n 1 125 GLY n 1 126 LEU n 1 127 VAL n 1 128 PRO n 1 129 LYS n 1 130 LEU n 1 131 PRO n 1 132 THR n 1 133 ILE n 1 134 GLN n 1 135 PRO n 1 136 ASN n 1 137 TYR n 1 138 GLY n 1 139 ARG n 1 140 LEU n 1 141 PHE n 1 142 PRO n 1 143 GLN n 1 144 VAL n 1 145 PHE n 1 146 GLN n 1 147 GLY n 1 148 ALA n 1 149 LEU n 1 150 LEU n 1 151 THR n 1 152 SER n 1 153 GLY n 1 154 GLU n 1 155 LEU n 1 156 SER n 1 157 GLY n 1 158 LEU n 1 159 SER n 1 160 LEU n 1 161 ASN n 1 162 LEU n 1 163 GLY n 1 164 ARG n 1 165 LEU n 1 166 THR n 1 167 GLU n 1 168 VAL n 1 169 SER n 1 170 GLN n 1 171 ARG n 1 172 ASN n 1 173 GLU n 1 174 ALA n 1 175 GLY n 1 176 THR n 1 177 SER n 1 178 ASP n 1 179 LEU n 1 180 ALA n 1 181 LEU n 1 182 PHE n 1 183 ASN n 1 184 ARG n 1 185 ASN n 1 186 ARG n 1 187 ARG n 1 188 PHE n 1 189 ALA n 1 190 GLY n 1 191 ALA n 1 192 ALA n 1 193 GLN n 1 194 ALA n 1 195 ASP n 1 196 ARG n 1 197 PHE n 1 198 ASP n 1 199 LEU n 1 200 ALA n 1 201 GLY n 1 202 LEU n 1 203 ASP n 1 204 TYR n 1 205 ARG n 1 206 ILE n 1 207 ALA n 1 208 PRO n 1 209 ASP n 1 210 TRP n 1 211 THR n 1 212 GLY n 1 213 SER n 1 214 TYR n 1 215 HIS n 1 216 TYR n 1 217 GLY n 1 218 GLU n 1 219 LEU n 1 220 GLU n 1 221 GLN n 1 222 VAL n 1 223 TYR n 1 224 ALA n 1 225 GLN n 1 226 HIS n 1 227 PHE n 1 228 LEU n 1 229 GLY n 1 230 LEU n 1 231 LYS n 1 232 GLY n 1 233 ARG n 1 234 ILE n 1 235 GLY n 1 236 ILE n 1 237 ALA n 1 238 ALA n 1 239 ASP n 1 240 SER n 1 241 LEU n 1 242 GLU n 1 243 SER n 1 244 ASP n 1 245 LEU n 1 246 ARG n 1 247 LEU n 1 248 ALA n 1 249 LEU n 1 250 SER n 1 251 ARG n 1 252 ASP n 1 253 THR n 1 254 GLY n 1 255 GLY n 1 256 ALA n 1 257 ARG n 1 258 GLY n 1 259 GLY n 1 260 ARG n 1 261 ILE n 1 262 ASP n 1 263 ASN n 1 264 ARG n 1 265 SER n 1 266 PHE n 1 267 SER n 1 268 GLY n 1 269 SER n 1 270 LEU n 1 271 THR n 1 272 TYR n 1 273 ARG n 1 274 LEU n 1 275 ARG n 1 276 ASN n 1 277 GLY n 1 278 GLN n 1 279 ALA n 1 280 PHE n 1 281 GLY n 1 282 LEU n 1 283 GLY n 1 284 TYR n 1 285 GLN n 1 286 ARG n 1 287 MET n 1 288 SER n 1 289 GLY n 1 290 ASP n 1 291 HIS n 1 292 GLY n 1 293 PHE n 1 294 PRO n 1 295 TYR n 1 296 LEU n 1 297 GLU n 1 298 GLY n 1 299 THR n 1 300 ASP n 1 301 PRO n 1 302 TYR n 1 303 LEU n 1 304 VAL n 1 305 ASN n 1 306 PHE n 1 307 GLY n 1 308 GLN n 1 309 TYR n 1 310 ASN n 1 311 ASP n 1 312 PHE n 1 313 ALA n 1 314 GLU n 1 315 ALA n 1 316 GLY n 1 317 GLU n 1 318 SER n 1 319 SER n 1 320 TRP n 1 321 GLN n 1 322 LEU n 1 323 ARG n 1 324 TYR n 1 325 ASP n 1 326 CYS n 1 327 ASP n 1 328 PHE n 1 329 ALA n 1 330 PRO n 1 331 LEU n 1 332 GLY n 1 333 VAL n 1 334 PRO n 1 335 GLY n 1 336 LEU n 1 337 SER n 1 338 LEU n 1 339 MET n 1 340 THR n 1 341 ARG n 1 342 TYR n 1 343 PHE n 1 344 SER n 1 345 GLY n 1 346 HIS n 1 347 GLY n 1 348 ALA n 1 349 LYS n 1 350 PRO n 1 351 LYS n 1 352 GLY n 1 353 ALA n 1 354 ASP n 1 355 GLY n 1 356 SER n 1 357 ARG n 1 358 GLU n 1 359 TRP n 1 360 GLU n 1 361 ARG n 1 362 ASP n 1 363 SER n 1 364 ASP n 1 365 LEU n 1 366 ARG n 1 367 TYR n 1 368 VAL n 1 369 LEU n 1 370 GLN n 1 371 GLY n 1 372 GLY n 1 373 ALA n 1 374 LEU n 1 375 LYS n 1 376 GLY n 1 377 LEU n 1 378 GLY n 1 379 LEU n 1 380 VAL n 1 381 TRP n 1 382 ARG n 1 383 ASN n 1 384 ALA n 1 385 THR n 1 386 TYR n 1 387 ARG n 1 388 SER n 1 389 ALA n 1 390 PHE n 1 391 SER n 1 392 ARG n 1 393 ASP n 1 394 ILE n 1 395 ASP n 1 396 GLU n 1 397 ASN n 1 398 ARG n 1 399 LEU n 1 400 TYR n 1 401 LEU n 1 402 THR n 1 403 TYR n 1 404 GLU n 1 405 LEU n 1 406 PRO n 1 407 LEU n 1 408 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PA3588 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 208964 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9HY38_PSEAE _struct_ref.pdbx_db_accession Q9HY38 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EGFLEDSRASLALRNFYMNRDFRDGAGRAKSEEWAQGFLFDYRSGYTEGTLGVGLDLLGKLGVRLDSGAGRSGTGLLPLR DDGSAAGDYARLDATAKLRLSRSELKVGGLVPKLPTIQPNYGRLFPQVFQGALLTSGELSGLSLNLGRLTEVSQRNEAGT SDLALFNRNRRFAGAAQADRFDLAGLDYRIAPDWTGSYHYGELEQVYAQHFLGLKGRIGIAADSLESDLRLALSRDTGGA RGGRIDNRSFSGSLTYRLRNGQAFGLGYQRMSGDHGFPYLEGTDPYLVNFGQYNDFAEAGESSWQLRYDCDFAPLGVPGL SLMTRYFSGHGAKPKGADGSREWERDSDLRYVLQGGALKGLGLVWRNATYRSAFSRDIDENRLYLTYELPLF ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4FSP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 17 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 408 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HY38 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 416 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 392 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4FSP HIS A 1 ? UNP Q9HY38 ? ? 'expression tag' -15 1 1 4FSP HIS A 2 ? UNP Q9HY38 ? ? 'expression tag' -14 2 1 4FSP HIS A 3 ? UNP Q9HY38 ? ? 'expression tag' -13 3 1 4FSP HIS A 4 ? UNP Q9HY38 ? ? 'expression tag' -12 4 1 4FSP HIS A 5 ? UNP Q9HY38 ? ? 'expression tag' -11 5 1 4FSP HIS A 6 ? UNP Q9HY38 ? ? 'expression tag' -10 6 1 4FSP HIS A 7 ? UNP Q9HY38 ? ? 'expression tag' -9 7 1 4FSP GLU A 8 ? UNP Q9HY38 ? ? 'expression tag' -8 8 1 4FSP ASN A 9 ? UNP Q9HY38 ? ? 'expression tag' -7 9 1 4FSP LEU A 10 ? UNP Q9HY38 ? ? 'expression tag' -6 10 1 4FSP TYR A 11 ? UNP Q9HY38 ? ? 'expression tag' -5 11 1 4FSP PHE A 12 ? UNP Q9HY38 ? ? 'expression tag' -4 12 1 4FSP GLN A 13 ? UNP Q9HY38 ? ? 'expression tag' -3 13 1 4FSP GLY A 14 ? UNP Q9HY38 ? ? 'expression tag' -2 14 1 4FSP LEU A 15 ? UNP Q9HY38 ? ? 'expression tag' -1 15 1 4FSP GLU A 16 ? UNP Q9HY38 ? ? 'expression tag' 0 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C8E non-polymer . '(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE' ? 'C16 H34 O5' 306.438 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4FSP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.31 _exptl_crystal.density_percent_sol 62.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '10% PEG 4000, 0.2M potassium fluoride, 0.05M sodium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2012-06-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.897 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X6A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X6A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.897 # _reflns.entry_id 4FSP _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.32 _reflns.number_obs 26201 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_netI_over_sigmaI 33.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.32 _reflns_shell.d_res_low 2.36 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.628 _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1288 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4FSP _refine.ls_number_reflns_obs 26141 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.948 _refine.ls_d_res_high 2.323 _refine.ls_percent_reflns_obs 99.74 _refine.ls_R_factor_obs 0.1960 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1936 _refine.ls_R_factor_R_free 0.2406 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.08 _refine.ls_number_reflns_R_free 1327 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3T20' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 23.31 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2871 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 105 _refine_hist.number_atoms_solvent 159 _refine_hist.number_atoms_total 3135 _refine_hist.d_res_high 2.323 _refine_hist.d_res_low 19.948 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 3030 ? 'X-RAY DIFFRACTION' f_angle_d 1.232 ? ? 4042 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 17.899 ? ? 1144 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.084 ? ? 403 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 524 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.3233 2.4161 2645 0.2165 98.00 0.2767 . . 150 . . . . 'X-RAY DIFFRACTION' . 2.4161 2.5259 2745 0.2145 100.00 0.3189 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.5259 2.6588 2744 0.1978 100.00 0.2391 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.6588 2.8249 2713 0.1951 100.00 0.2631 . . 161 . . . . 'X-RAY DIFFRACTION' . 2.8249 3.0424 2777 0.1894 100.00 0.2592 . . 131 . . . . 'X-RAY DIFFRACTION' . 3.0424 3.3472 2723 0.1920 100.00 0.2291 . . 153 . . . . 'X-RAY DIFFRACTION' . 3.3472 3.8286 2811 0.1848 100.00 0.2381 . . 129 . . . . 'X-RAY DIFFRACTION' . 3.8286 4.8124 2765 0.1806 100.00 0.2173 . . 156 . . . . 'X-RAY DIFFRACTION' . 4.8124 19.9485 2891 0.2074 100.00 0.2404 . . 163 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4FSP _struct.title 'Crystal Structure of Pseudomonas aeruginosa OccK11 (OpdR)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FSP _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'Beta-barrel, Transporter (porin), Outer Membrane, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 236 A . ? ILE 220 A ALA 237 A ? ALA 221 A 1 -17.87 2 GLY 258 A . ? GLY 242 A GLY 259 A ? GLY 243 A 1 -10.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 19 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? anti-parallel A 12 13 ? anti-parallel A 13 14 ? anti-parallel A 14 15 ? anti-parallel A 15 16 ? anti-parallel A 16 17 ? anti-parallel A 17 18 ? anti-parallel A 18 19 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 24 ? PHE A 38 ? ARG A 8 PHE A 22 A 2 SER A 47 ? ARG A 59 ? SER A 31 ARG A 43 A 3 LEU A 67 ? ARG A 80 ? LEU A 51 ARG A 64 A 4 TYR A 105 ? LEU A 116 ? TYR A 89 LEU A 100 A 5 SER A 119 ? LEU A 126 ? SER A 103 LEU A 110 A 6 PHE A 145 ? SER A 152 ? PHE A 129 SER A 136 A 7 LEU A 158 ? VAL A 168 ? LEU A 142 VAL A 152 A 8 PHE A 197 ? ALA A 207 ? PHE A 181 ALA A 191 A 9 TRP A 210 ? LEU A 219 ? TRP A 194 LEU A 203 A 10 TYR A 223 ? GLY A 235 ? TYR A 207 GLY A 219 A 11 SER A 240 ? ASP A 252 ? SER A 224 ASP A 236 A 12 ASP A 262 ? ARG A 273 ? ASP A 246 ARG A 257 A 13 GLN A 278 ? SER A 288 ? GLN A 262 SER A 272 A 14 SER A 318 ? ASP A 327 ? SER A 302 ASP A 311 A 15 LEU A 336 ? HIS A 346 ? LEU A 320 HIS A 330 A 16 GLU A 358 ? VAL A 368 ? GLU A 342 VAL A 352 A 17 GLY A 378 ? SER A 388 ? GLY A 362 SER A 372 A 18 ILE A 394 ? PRO A 406 ? ILE A 378 PRO A 390 A 19 ARG A 24 ? PHE A 38 ? ARG A 8 PHE A 22 B 1 GLN A 134 ? PRO A 135 ? GLN A 118 PRO A 119 B 2 THR A 299 ? ASP A 300 ? THR A 283 ASP A 284 C 1 LEU A 179 ? ALA A 180 ? LEU A 163 ALA A 164 C 2 GLN A 193 ? ALA A 194 ? GLN A 177 ALA A 178 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 24 ? N ARG A 8 O ARG A 59 ? O ARG A 43 A 2 3 N PHE A 56 ? N PHE A 40 O GLY A 75 ? O GLY A 59 A 3 4 N GLY A 78 ? N GLY A 62 O TYR A 105 ? O TYR A 89 A 4 5 N LEU A 114 ? N LEU A 98 O LEU A 121 ? O LEU A 105 A 5 6 N LEU A 126 ? N LEU A 110 O PHE A 145 ? O PHE A 129 A 6 7 N LEU A 150 ? N LEU A 134 O LEU A 162 ? O LEU A 146 A 7 8 N GLY A 163 ? N GLY A 147 O LEU A 199 ? O LEU A 183 A 8 9 N ALA A 200 ? N ALA A 184 O TYR A 216 ? O TYR A 200 A 9 10 N GLY A 217 ? N GLY A 201 O GLN A 225 ? O GLN A 209 A 10 11 N HIS A 226 ? N HIS A 210 O LEU A 249 ? O LEU A 233 A 11 12 N SER A 250 ? N SER A 234 O ASN A 263 ? O ASN A 247 A 12 13 N ARG A 264 ? N ARG A 248 O SER A 288 ? O SER A 272 A 13 14 N GLN A 285 ? N GLN A 269 O SER A 319 ? O SER A 303 A 14 15 N TYR A 324 ? N TYR A 308 O THR A 340 ? O THR A 324 A 15 16 N GLY A 345 ? N GLY A 329 O GLU A 358 ? O GLU A 342 A 16 17 N TYR A 367 ? N TYR A 351 O LEU A 379 ? O LEU A 363 A 17 18 N ARG A 382 ? N ARG A 366 O ARG A 398 ? O ARG A 382 A 18 19 O TYR A 403 ? O TYR A 387 N LEU A 29 ? N LEU A 13 B 1 2 N GLN A 134 ? N GLN A 118 O ASP A 300 ? O ASP A 284 C 1 2 N LEU A 179 ? N LEU A 163 O ALA A 194 ? O ALA A 178 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A C8E 401 ? 4 'BINDING SITE FOR RESIDUE C8E A 401' AC2 Software A C8E 402 ? 3 'BINDING SITE FOR RESIDUE C8E A 402' AC3 Software A C8E 403 ? 1 'BINDING SITE FOR RESIDUE C8E A 403' AC4 Software A C8E 404 ? 3 'BINDING SITE FOR RESIDUE C8E A 404' AC5 Software A C8E 405 ? 7 'BINDING SITE FOR RESIDUE C8E A 405' AC6 Software A C8E 406 ? 3 'BINDING SITE FOR RESIDUE C8E A 406' AC7 Software A C8E 407 ? 2 'BINDING SITE FOR RESIDUE C8E A 407' AC8 Software A C8E 408 ? 3 'BINDING SITE FOR RESIDUE C8E A 408' AC9 Software A C8E 409 ? 4 'BINDING SITE FOR RESIDUE C8E A 409' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LEU A 20 ? LEU A 4 . ? 1_555 ? 2 AC1 4 TYR A 58 ? TYR A 42 . ? 1_555 ? 3 AC1 4 TYR A 214 ? TYR A 198 . ? 6_454 ? 4 AC1 4 HIS A 226 ? HIS A 210 . ? 6_454 ? 5 AC2 3 ASN A 276 ? ASN A 260 . ? 1_555 ? 6 AC2 3 GLN A 278 ? GLN A 262 . ? 1_555 ? 7 AC2 3 C8E F . ? C8E A 405 . ? 4_555 ? 8 AC3 1 VAL A 69 ? VAL A 53 . ? 1_555 ? 9 AC4 3 GLU A 64 ? GLU A 48 . ? 1_555 ? 10 AC4 3 PHE A 266 ? PHE A 250 . ? 6_454 ? 11 AC4 3 HOH K . ? HOH A 611 . ? 6_454 ? 12 AC5 7 GLN A 278 ? GLN A 262 . ? 4_555 ? 13 AC5 7 TYR A 324 ? TYR A 308 . ? 4_555 ? 14 AC5 7 PHE A 328 ? PHE A 312 . ? 1_555 ? 15 AC5 7 LEU A 331 ? LEU A 315 . ? 4_555 ? 16 AC5 7 VAL A 333 ? VAL A 317 . ? 1_555 ? 17 AC5 7 LEU A 338 ? LEU A 322 . ? 1_555 ? 18 AC5 7 C8E C . ? C8E A 402 . ? 4_555 ? 19 AC6 3 TYR A 214 ? TYR A 198 . ? 1_555 ? 20 AC6 3 GLU A 218 ? GLU A 202 . ? 1_555 ? 21 AC6 3 THR A 253 ? THR A 237 . ? 1_555 ? 22 AC7 2 LYS A 76 ? LYS A 60 . ? 1_555 ? 23 AC7 2 ARG A 107 ? ARG A 91 . ? 1_555 ? 24 AC8 3 TYR A 214 ? TYR A 198 . ? 1_555 ? 25 AC8 3 HIS A 226 ? HIS A 210 . ? 1_555 ? 26 AC8 3 PHE A 408 ? PHE A 392 . ? 6_455 ? 27 AC9 4 LEU A 108 ? LEU A 92 . ? 6_455 ? 28 AC9 4 LEU A 202 ? LEU A 186 . ? 1_555 ? 29 AC9 4 SER A 213 ? SER A 197 . ? 1_555 ? 30 AC9 4 TYR A 214 ? TYR A 198 . ? 1_555 ? # _database_PDB_matrix.entry_id 4FSP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4FSP _atom_sites.fract_transf_matrix[1][1] 0.010428 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006765 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011832 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_