HEADER PROTEIN BINDING 24-FEB-24 8YFK TITLE CRYSTAL STRUCTURE OF FIP200 CLAW/TNIP1_FIR_PS123 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RB1-INDUCIBLE COILED-COIL PROTEIN 1; COMPND 3 CHAIN: A, G, C, E; COMPND 4 FRAGMENT: CLAW DOMAIN; COMPND 5 SYNONYM: FAK FAMILY KINASE-INTERACTING PROTEIN OF 200 KDA,FIP200; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TNIP1_FIR_PS123 PEPTIDE; COMPND 9 CHAIN: B, H, D, F; COMPND 10 SYNONYM: A20-BINDING INHIBITOR OF NF-KAPPA-B ACTIVATION 1,ABIN-1,HIV- COMPND 11 1 NEF-INTERACTING PROTEIN,NEF-ASSOCIATED FACTOR 1,NAF1,NIP40-1, COMPND 12 VIRION-ASSOCIATED NUCLEAR SHUTTLING PROTEIN,VAN,HVAN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RB1CC1, KIAA0203, RBICC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PHOSPHORYLATION, SELECTIVE MITOPHAGY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.Q.LV,S.M.WU REVDAT 3 13-NOV-24 8YFK 1 REMARK REVDAT 2 28-AUG-24 8YFK 1 JRNL REVDAT 1 14-AUG-24 8YFK 0 JRNL AUTH S.WU,M.LI,L.WANG,L.YANG,J.CUI,F.LI,Q.WANG,Y.SHI,M.LV JRNL TITL STRUCTURAL BASIS FOR TNIP1 BINDING TO FIP200 DURING JRNL TITL 2 MITOPHAGY. JRNL REF J.BIOL.CHEM. V. 300 07605 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39059492 JRNL DOI 10.1016/J.JBC.2024.107605 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.16_3549: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 31812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4517 - 4.4448 0.97 2775 136 0.1657 0.1951 REMARK 3 2 4.4448 - 3.5292 0.98 2746 145 0.1436 0.1613 REMARK 3 3 3.5292 - 3.0835 0.98 2798 118 0.1755 0.2247 REMARK 3 4 3.0835 - 2.8017 0.97 2811 112 0.1948 0.2082 REMARK 3 5 2.8017 - 2.6010 0.97 2759 146 0.2082 0.2744 REMARK 3 6 2.6010 - 2.4477 0.98 2776 134 0.2054 0.2719 REMARK 3 7 2.4477 - 2.3251 0.98 2773 135 0.2069 0.2828 REMARK 3 8 2.3251 - 2.2239 0.97 2688 144 0.2140 0.2563 REMARK 3 9 2.2239 - 2.1383 0.97 2801 138 0.2253 0.2717 REMARK 3 10 2.1383 - 2.0645 0.96 2746 126 0.2543 0.3229 REMARK 3 11 2.0645 - 2.0000 0.96 2651 154 0.2690 0.3073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3411 REMARK 3 ANGLE : 0.843 4621 REMARK 3 CHIRALITY : 0.056 511 REMARK 3 PLANARITY : 0.005 570 REMARK 3 DIHEDRAL : 23.865 1247 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1494 THROUGH 1594) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4089 -0.2596 4.5064 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.1969 REMARK 3 T33: 0.3002 T12: 0.0010 REMARK 3 T13: 0.0003 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.1686 L22: 2.4530 REMARK 3 L33: 6.5975 L12: -0.2337 REMARK 3 L13: -0.5162 L23: -0.2776 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: -0.0256 S13: 0.4133 REMARK 3 S21: -0.0868 S22: -0.0681 S23: -0.1355 REMARK 3 S31: -0.6018 S32: 0.0947 S33: -0.0042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 103 THROUGH 109) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2280 2.9902 -8.8101 REMARK 3 T TENSOR REMARK 3 T11: 0.7076 T22: 0.4096 REMARK 3 T33: 0.5717 T12: 0.0964 REMARK 3 T13: -0.1180 T23: 0.0615 REMARK 3 L TENSOR REMARK 3 L11: 7.2621 L22: 2.0003 REMARK 3 L33: 2.0014 L12: 4.6720 REMARK 3 L13: -4.8322 L23: -9.1858 REMARK 3 S TENSOR REMARK 3 S11: -0.4019 S12: 0.2615 S13: 1.3925 REMARK 3 S21: -0.8919 S22: 0.3688 S23: 0.7642 REMARK 3 S31: -1.2174 S32: -1.0194 S33: 0.0352 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'G' AND RESID 1493 THROUGH 1591) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8972 -7.7086 19.0896 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.1745 REMARK 3 T33: 0.2261 T12: 0.0224 REMARK 3 T13: 0.0022 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 3.6035 L22: 2.1424 REMARK 3 L33: 6.5030 L12: 0.8792 REMARK 3 L13: 1.3603 L23: -0.1437 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: 0.0203 S13: 0.1218 REMARK 3 S21: -0.0128 S22: 0.0087 S23: 0.0123 REMARK 3 S31: -0.0015 S32: -0.0448 S33: -0.0455 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'H' AND RESID 103 THROUGH 109) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4953 -8.8695 32.4078 REMARK 3 T TENSOR REMARK 3 T11: 0.4355 T22: 0.3749 REMARK 3 T33: 0.4965 T12: 0.0316 REMARK 3 T13: 0.0403 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 2.0008 L22: 2.0033 REMARK 3 L33: 8.9183 L12: 7.4038 REMARK 3 L13: -1.5775 L23: -3.9327 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: -0.0018 S13: -0.5086 REMARK 3 S21: -0.2041 S22: -0.0105 S23: -1.5423 REMARK 3 S31: 0.4265 S32: 0.7081 S33: -0.0553 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1494 THROUGH 1591) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4635 12.5358 -27.5876 REMARK 3 T TENSOR REMARK 3 T11: 0.3069 T22: 0.2019 REMARK 3 T33: 0.3251 T12: -0.0201 REMARK 3 T13: -0.0042 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 4.8987 L22: 4.1531 REMARK 3 L33: 5.8870 L12: -1.0984 REMARK 3 L13: -1.4845 L23: -0.0382 REMARK 3 S TENSOR REMARK 3 S11: -0.1077 S12: -0.1306 S13: -0.7864 REMARK 3 S21: 0.0050 S22: 0.0213 S23: 0.2832 REMARK 3 S31: 0.9294 S32: -0.1732 S33: 0.0746 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 103 THROUGH 109) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1071 5.3443 -38.7497 REMARK 3 T TENSOR REMARK 3 T11: 1.3265 T22: 0.6029 REMARK 3 T33: 1.0509 T12: 0.2097 REMARK 3 T13: 0.1336 T23: -0.0825 REMARK 3 L TENSOR REMARK 3 L11: 2.0013 L22: 8.9700 REMARK 3 L33: 6.5708 L12: 3.9220 REMARK 3 L13: 1.8412 L23: 6.9198 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: 0.1363 S13: -2.9594 REMARK 3 S21: -1.0675 S22: -0.1541 S23: -2.3434 REMARK 3 S31: 3.0198 S32: 0.7128 S33: 0.2124 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 1493 THROUGH 1590) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5846 24.0470 -15.3977 REMARK 3 T TENSOR REMARK 3 T11: 0.1665 T22: 0.1827 REMARK 3 T33: 0.2153 T12: 0.0391 REMARK 3 T13: -0.0335 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.1482 L22: 4.0755 REMARK 3 L33: 7.0550 L12: 0.2972 REMARK 3 L13: -1.9398 L23: 0.9095 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: 0.0054 S13: -0.1591 REMARK 3 S21: -0.0315 S22: -0.0228 S23: 0.0501 REMARK 3 S31: 0.2618 S32: 0.0965 S33: 0.0207 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 103 THROUGH 109) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8637 29.2277 -3.1628 REMARK 3 T TENSOR REMARK 3 T11: 0.4095 T22: 0.6997 REMARK 3 T33: 0.5255 T12: -0.0904 REMARK 3 T13: 0.0210 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.0013 L22: 2.0037 REMARK 3 L33: 2.0029 L12: 5.3302 REMARK 3 L13: -5.3829 L23: -1.5875 REMARK 3 S TENSOR REMARK 3 S11: 0.3493 S12: 0.4919 S13: 0.4781 REMARK 3 S21: 0.0604 S22: -0.2537 S23: 1.7139 REMARK 3 S31: 0.6948 S32: -2.2071 S33: -0.0983 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31812 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 37.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.018M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.018M CALCIUM CHLORIDE DEHYDRATE, 0.1M IMIDAZOLE, 0.1M MES, REMARK 280 0.1M MONOHYDRATE, 10% V/V MPD, 10% PEG 1000, 10% V/V PEG 3350, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1490 REMARK 465 ARG A 1491 REMARK 465 HIS A 1492 REMARK 465 SER A 1493 REMARK 465 GLY A 1543 REMARK 465 GLU A 1544 REMARK 465 GLY A 1545 REMARK 465 ALA A 1546 REMARK 465 SER A 1547 REMARK 465 GLY A 1548 REMARK 465 ALA A 1549 REMARK 465 SER A 1550 REMARK 465 SER B 99 REMARK 465 SER B 100 REMARK 465 GLY B 101 REMARK 465 THR B 102 REMARK 465 SER G 1490 REMARK 465 ARG G 1491 REMARK 465 HIS G 1492 REMARK 465 LYS G 1592 REMARK 465 LYS G 1593 REMARK 465 VAL G 1594 REMARK 465 SER H 99 REMARK 465 SER H 100 REMARK 465 GLY H 101 REMARK 465 THR H 102 REMARK 465 SER C 1490 REMARK 465 ARG C 1491 REMARK 465 HIS C 1492 REMARK 465 SER C 1493 REMARK 465 GLY C 1543 REMARK 465 GLU C 1544 REMARK 465 GLY C 1545 REMARK 465 ALA C 1546 REMARK 465 SER C 1547 REMARK 465 GLY C 1548 REMARK 465 ALA C 1549 REMARK 465 SER C 1550 REMARK 465 LYS C 1592 REMARK 465 LYS C 1593 REMARK 465 VAL C 1594 REMARK 465 SER D 99 REMARK 465 SER D 100 REMARK 465 GLY D 101 REMARK 465 THR D 102 REMARK 465 SER E 1490 REMARK 465 ARG E 1491 REMARK 465 HIS E 1492 REMARK 465 ASN E 1591 REMARK 465 LYS E 1592 REMARK 465 LYS E 1593 REMARK 465 VAL E 1594 REMARK 465 SER F 99 REMARK 465 SER F 100 REMARK 465 GLY F 101 REMARK 465 THR F 102 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1514 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1533 CG CD OE1 OE2 REMARK 470 LYS A1541 CG CD CE NZ REMARK 470 ARG G1551 CG CD NE CZ NH1 NH2 REMARK 470 LYS G1568 CG CD CE NZ REMARK 470 LYS C1541 CG CD CE NZ REMARK 470 LYS C1568 CG CD CE NZ REMARK 470 SER E1493 OG REMARK 470 SER E1547 OG REMARK 470 ARG E1551 CG CD NE CZ NH1 NH2 REMARK 470 LYS E1568 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1561 146.28 -171.09 REMARK 500 ASN A1591 10.10 -144.23 REMARK 500 TRP G1590 -67.91 -91.77 REMARK 500 SEP D 104 -5.44 -144.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 8YFK A 1490 1594 UNP Q8TDY2 RBCC1_HUMAN 1490 1594 DBREF 8YFK B 99 109 UNP Q15025 TNIP1_HUMAN 118 128 DBREF 8YFK G 1490 1594 UNP Q8TDY2 RBCC1_HUMAN 1490 1594 DBREF 8YFK H 99 109 UNP Q15025 TNIP1_HUMAN 118 128 DBREF 8YFK C 1490 1594 UNP Q8TDY2 RBCC1_HUMAN 1490 1594 DBREF 8YFK D 99 109 UNP Q15025 TNIP1_HUMAN 118 128 DBREF 8YFK E 1490 1594 UNP Q8TDY2 RBCC1_HUMAN 1490 1594 DBREF 8YFK F 99 109 UNP Q15025 TNIP1_HUMAN 118 128 SEQRES 1 A 105 SER ARG HIS SER GLU LYS ILE ALA ILE ARG ASP PHE GLN SEQRES 2 A 105 VAL GLY ASP LEU VAL LEU ILE ILE LEU ASP GLU ARG HIS SEQRES 3 A 105 ASP ASN TYR VAL LEU PHE THR VAL SER PRO THR LEU TYR SEQRES 4 A 105 PHE LEU HIS SER GLU SER LEU PRO ALA LEU ASP LEU LYS SEQRES 5 A 105 PRO GLY GLU GLY ALA SER GLY ALA SER ARG ARG PRO TRP SEQRES 6 A 105 VAL LEU GLY LYS VAL MET GLU LYS GLU TYR CYS GLN ALA SEQRES 7 A 105 LYS LYS ALA GLN ASN ARG PHE LYS VAL PRO LEU GLY THR SEQRES 8 A 105 LYS PHE TYR ARG VAL LYS ALA VAL SER TRP ASN LYS LYS SEQRES 9 A 105 VAL SEQRES 1 B 11 SER SER GLY THR SER SEP GLU PHE GLU VAL VAL SEQRES 1 G 105 SER ARG HIS SER GLU LYS ILE ALA ILE ARG ASP PHE GLN SEQRES 2 G 105 VAL GLY ASP LEU VAL LEU ILE ILE LEU ASP GLU ARG HIS SEQRES 3 G 105 ASP ASN TYR VAL LEU PHE THR VAL SER PRO THR LEU TYR SEQRES 4 G 105 PHE LEU HIS SER GLU SER LEU PRO ALA LEU ASP LEU LYS SEQRES 5 G 105 PRO GLY GLU GLY ALA SER GLY ALA SER ARG ARG PRO TRP SEQRES 6 G 105 VAL LEU GLY LYS VAL MET GLU LYS GLU TYR CYS GLN ALA SEQRES 7 G 105 LYS LYS ALA GLN ASN ARG PHE LYS VAL PRO LEU GLY THR SEQRES 8 G 105 LYS PHE TYR ARG VAL LYS ALA VAL SER TRP ASN LYS LYS SEQRES 9 G 105 VAL SEQRES 1 H 11 SER SER GLY THR SER SEP GLU PHE GLU VAL VAL SEQRES 1 C 105 SER ARG HIS SER GLU LYS ILE ALA ILE ARG ASP PHE GLN SEQRES 2 C 105 VAL GLY ASP LEU VAL LEU ILE ILE LEU ASP GLU ARG HIS SEQRES 3 C 105 ASP ASN TYR VAL LEU PHE THR VAL SER PRO THR LEU TYR SEQRES 4 C 105 PHE LEU HIS SER GLU SER LEU PRO ALA LEU ASP LEU LYS SEQRES 5 C 105 PRO GLY GLU GLY ALA SER GLY ALA SER ARG ARG PRO TRP SEQRES 6 C 105 VAL LEU GLY LYS VAL MET GLU LYS GLU TYR CYS GLN ALA SEQRES 7 C 105 LYS LYS ALA GLN ASN ARG PHE LYS VAL PRO LEU GLY THR SEQRES 8 C 105 LYS PHE TYR ARG VAL LYS ALA VAL SER TRP ASN LYS LYS SEQRES 9 C 105 VAL SEQRES 1 D 11 SER SER GLY THR SER SEP GLU PHE GLU VAL VAL SEQRES 1 E 105 SER ARG HIS SER GLU LYS ILE ALA ILE ARG ASP PHE GLN SEQRES 2 E 105 VAL GLY ASP LEU VAL LEU ILE ILE LEU ASP GLU ARG HIS SEQRES 3 E 105 ASP ASN TYR VAL LEU PHE THR VAL SER PRO THR LEU TYR SEQRES 4 E 105 PHE LEU HIS SER GLU SER LEU PRO ALA LEU ASP LEU LYS SEQRES 5 E 105 PRO GLY GLU GLY ALA SER GLY ALA SER ARG ARG PRO TRP SEQRES 6 E 105 VAL LEU GLY LYS VAL MET GLU LYS GLU TYR CYS GLN ALA SEQRES 7 E 105 LYS LYS ALA GLN ASN ARG PHE LYS VAL PRO LEU GLY THR SEQRES 8 E 105 LYS PHE TYR ARG VAL LYS ALA VAL SER TRP ASN LYS LYS SEQRES 9 E 105 VAL SEQRES 1 F 11 SER SER GLY THR SER SEP GLU PHE GLU VAL VAL MODRES 8YFK SEP B 104 SER MODIFIED RESIDUE MODRES 8YFK SEP H 104 SER MODIFIED RESIDUE MODRES 8YFK SEP D 104 SER MODIFIED RESIDUE MODRES 8YFK SEP F 104 SER MODIFIED RESIDUE HET SEP B 104 10 HET SEP H 104 10 HET SEP D 104 10 HET SEP F 104 10 HET MPD A1601 8 HET MG A1602 1 HET MPD G1601 8 HET MG C1601 1 HET MPD E1601 8 HETNAM SEP PHOSPHOSERINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP 4(C3 H8 N O6 P) FORMUL 9 MPD 3(C6 H14 O2) FORMUL 10 MG 2(MG 2+) FORMUL 14 HOH *177(H2 O) HELIX 1 AA1 SER A 1532 ASP A 1539 5 8 HELIX 2 AA2 SER G 1534 LEU G 1538 5 5 HELIX 3 AA3 SER G 1547 ARG G 1552 5 6 HELIX 4 AA4 SER C 1532 LEU C 1535 5 4 HELIX 5 AA5 SER E 1534 LEU E 1538 5 5 HELIX 6 AA6 SER E 1547 ARG E 1552 5 6 SHEET 1 AA1 2 LYS A1495 ILE A1496 0 SHEET 2 AA1 2 ILE G1496 ALA G1497 -1 O ILE G1496 N ILE A1496 SHEET 1 AA2 7 PHE B 106 VAL B 108 0 SHEET 2 AA2 7 TRP A1554 ALA A1567 -1 N GLN A1566 O GLU B 107 SHEET 3 AA2 7 LYS A1581 VAL A1588 -1 O PHE A1582 N CYS A1565 SHEET 4 AA2 7 TYR A1528 LEU A1530 1 N PHE A1529 O VAL A1585 SHEET 5 AA2 7 ASN A1517 LEU A1520 -1 N LEU A1520 O TYR A1528 SHEET 6 AA2 7 LEU A1506 ASP A1512 -1 N ILE A1510 O VAL A1519 SHEET 7 AA2 7 TRP A1554 ALA A1567 -1 O VAL A1555 N ILE A1509 SHEET 1 AA3 7 PHE H 106 VAL H 108 0 SHEET 2 AA3 7 VAL G1555 ALA G1567 -1 N GLN G1566 O GLU H 107 SHEET 3 AA3 7 LYS G1581 ASN G1591 -1 O PHE G1582 N CYS G1565 SHEET 4 AA3 7 TYR G1528 LEU G1530 1 N PHE G1529 O VAL G1585 SHEET 5 AA3 7 ASN G1517 LEU G1520 -1 N TYR G1518 O LEU G1530 SHEET 6 AA3 7 LEU G1506 ASP G1512 -1 N ASP G1512 O ASN G1517 SHEET 7 AA3 7 VAL G1555 ALA G1567 -1 O VAL G1555 N ILE G1509 SHEET 1 AA4 5 PHE D 106 VAL D 108 0 SHEET 2 AA4 5 TRP C1554 ALA C1567 -1 N GLN C1566 O GLU D 107 SHEET 3 AA4 5 LEU C1506 ASP C1512 -1 N ILE C1509 O VAL C1555 SHEET 4 AA4 5 LYS C1495 ALA C1497 1 N ALA C1497 O LEU C1506 SHEET 5 AA4 5 ILE E1496 ALA E1497 -1 O ILE E1496 N ILE C1496 SHEET 1 AA5 8 PHE D 106 VAL D 108 0 SHEET 2 AA5 8 TRP C1554 ALA C1567 -1 N GLN C1566 O GLU D 107 SHEET 3 AA5 8 LYS C1581 VAL C1588 -1 O PHE C1582 N CYS C1565 SHEET 4 AA5 8 TYR C1528 LEU C1530 1 N PHE C1529 O VAL C1585 SHEET 5 AA5 8 ASN C1517 LEU C1520 -1 N LEU C1520 O TYR C1528 SHEET 6 AA5 8 LEU C1506 ASP C1512 -1 N ASP C1512 O ASN C1517 SHEET 7 AA5 8 LYS C1495 ALA C1497 1 N ALA C1497 O LEU C1506 SHEET 8 AA5 8 ILE E1496 ALA E1497 -1 O ILE E1496 N ILE C1496 SHEET 1 AA6 7 PHE F 106 VAL F 108 0 SHEET 2 AA6 7 VAL E1555 ALA E1567 -1 N GLN E1566 O GLU F 107 SHEET 3 AA6 7 LYS E1581 SER E1589 -1 O PHE E1582 N CYS E1565 SHEET 4 AA6 7 TYR E1528 LEU E1530 1 N PHE E1529 O VAL E1585 SHEET 5 AA6 7 ASN E1517 LEU E1520 -1 N TYR E1518 O LEU E1530 SHEET 6 AA6 7 LEU E1506 ASP E1512 -1 N ASP E1512 O ASN E1517 SHEET 7 AA6 7 VAL E1555 ALA E1567 -1 O VAL E1555 N ILE E1509 LINK C SER B 103 N SEP B 104 1555 1555 1.33 LINK C SEP B 104 N GLU B 105 1555 1555 1.33 LINK C SER H 103 N SEP H 104 1555 1555 1.33 LINK C SEP H 104 N GLU H 105 1555 1555 1.33 LINK C SER D 103 N SEP D 104 1555 1555 1.33 LINK C SEP D 104 N GLU D 105 1555 1555 1.33 LINK C SER F 103 N SEP F 104 1555 1555 1.33 LINK C SEP F 104 N GLU F 105 1555 1555 1.33 LINK OG SER C1532 MG MG C1601 1555 1555 2.89 CRYST1 37.812 45.936 72.951 81.20 89.67 88.74 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026447 -0.000582 -0.000062 0.00000 SCALE2 0.000000 0.021775 -0.003369 0.00000 SCALE3 0.000000 0.000000 0.013871 0.00000