data_8YIM # _entry.id 8YIM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8YIM pdb_00008yim 10.2210/pdb8yim/pdb WWPDB D_1300045601 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-12-04 2 'Structure model' 1 1 2024-12-18 3 'Structure model' 1 2 2025-01-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 3 'Structure model' '_citation.journal_volume' 14 3 'Structure model' '_citation.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8YIM _pdbx_database_status.recvd_initial_deposition_date 2024-02-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email aikweishen@hkbu.edu.hk _pdbx_contact_author.name_first 'Wei Shen' _pdbx_contact_author.name_last Aik _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4414-173X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chau, Y.Y.' 1 ? 'Liang, H.' 2 ? 'Aik, W.S.' 3 0000-0003-4414-173X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 301 _citation.language ? _citation.page_first 108036 _citation.page_last 108036 _citation.title 'Structural basis for Rab23 activation and a loss-of-function mutation in Carpenter syndrome.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2024.108036 _citation.pdbx_database_id_PubMed 39615683 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chau, Y.Y.' 1 ? primary 'Liang, H.' 2 ? primary 'Tung, W.L.' 3 ? primary 'Hor, C.H.H.' 4 ? primary 'Aik, W.S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ras-related protein Rab-23' 19089.822 1 ? ? ? 'Truncated to residues 7-172' 2 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 3 non-polymer nat 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 193 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC VLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYL AEKYLQK ; _entity_poly.pdbx_seq_one_letter_code_can ;SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC VLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYL AEKYLQK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 VAL n 1 4 ALA n 1 5 ILE n 1 6 LYS n 1 7 MET n 1 8 VAL n 1 9 VAL n 1 10 VAL n 1 11 GLY n 1 12 ASN n 1 13 GLY n 1 14 ALA n 1 15 VAL n 1 16 GLY n 1 17 LYS n 1 18 SER n 1 19 SER n 1 20 MET n 1 21 ILE n 1 22 GLN n 1 23 ARG n 1 24 TYR n 1 25 CYS n 1 26 LYS n 1 27 GLY n 1 28 ILE n 1 29 PHE n 1 30 THR n 1 31 LYS n 1 32 ASP n 1 33 TYR n 1 34 LYS n 1 35 LYS n 1 36 THR n 1 37 ILE n 1 38 GLY n 1 39 VAL n 1 40 ASP n 1 41 PHE n 1 42 LEU n 1 43 GLU n 1 44 ARG n 1 45 GLN n 1 46 ILE n 1 47 GLN n 1 48 VAL n 1 49 ASN n 1 50 ASP n 1 51 GLU n 1 52 ASP n 1 53 VAL n 1 54 ARG n 1 55 LEU n 1 56 MET n 1 57 LEU n 1 58 TRP n 1 59 ASP n 1 60 THR n 1 61 ALA n 1 62 GLY n 1 63 GLN n 1 64 GLU n 1 65 GLU n 1 66 PHE n 1 67 ASP n 1 68 ALA n 1 69 ILE n 1 70 THR n 1 71 LYS n 1 72 ALA n 1 73 TYR n 1 74 TYR n 1 75 ARG n 1 76 GLY n 1 77 ALA n 1 78 GLN n 1 79 ALA n 1 80 CYS n 1 81 VAL n 1 82 LEU n 1 83 VAL n 1 84 PHE n 1 85 SER n 1 86 THR n 1 87 THR n 1 88 ASP n 1 89 ARG n 1 90 GLU n 1 91 SER n 1 92 PHE n 1 93 GLU n 1 94 ALA n 1 95 VAL n 1 96 SER n 1 97 SER n 1 98 TRP n 1 99 ARG n 1 100 GLU n 1 101 LYS n 1 102 VAL n 1 103 VAL n 1 104 ALA n 1 105 GLU n 1 106 VAL n 1 107 GLY n 1 108 ASP n 1 109 ILE n 1 110 PRO n 1 111 THR n 1 112 VAL n 1 113 LEU n 1 114 VAL n 1 115 GLN n 1 116 ASN n 1 117 LYS n 1 118 ILE n 1 119 ASP n 1 120 LEU n 1 121 LEU n 1 122 ASP n 1 123 ASP n 1 124 SER n 1 125 CYS n 1 126 ILE n 1 127 LYS n 1 128 ASN n 1 129 GLU n 1 130 GLU n 1 131 ALA n 1 132 GLU n 1 133 ALA n 1 134 LEU n 1 135 ALA n 1 136 LYS n 1 137 ARG n 1 138 LEU n 1 139 LYS n 1 140 LEU n 1 141 ARG n 1 142 PHE n 1 143 TYR n 1 144 ARG n 1 145 THR n 1 146 SER n 1 147 VAL n 1 148 LYS n 1 149 GLU n 1 150 ASP n 1 151 LEU n 1 152 ASN n 1 153 VAL n 1 154 ASN n 1 155 GLU n 1 156 VAL n 1 157 PHE n 1 158 LYS n 1 159 TYR n 1 160 LEU n 1 161 ALA n 1 162 GLU n 1 163 LYS n 1 164 TYR n 1 165 LEU n 1 166 GLN n 1 167 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 167 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RAB23, HSPC137' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 6 ? ? ? A . n A 1 2 GLU 2 7 7 GLU GLU A . n A 1 3 VAL 3 8 8 VAL VAL A . n A 1 4 ALA 4 9 9 ALA ALA A . n A 1 5 ILE 5 10 10 ILE ILE A . n A 1 6 LYS 6 11 11 LYS LYS A . n A 1 7 MET 7 12 12 MET MET A . n A 1 8 VAL 8 13 13 VAL VAL A . n A 1 9 VAL 9 14 14 VAL VAL A . n A 1 10 VAL 10 15 15 VAL VAL A . n A 1 11 GLY 11 16 16 GLY GLY A . n A 1 12 ASN 12 17 17 ASN ASN A . n A 1 13 GLY 13 18 18 GLY GLY A . n A 1 14 ALA 14 19 19 ALA ALA A . n A 1 15 VAL 15 20 20 VAL VAL A . n A 1 16 GLY 16 21 21 GLY GLY A . n A 1 17 LYS 17 22 22 LYS LYS A . n A 1 18 SER 18 23 23 SER SER A . n A 1 19 SER 19 24 24 SER SER A . n A 1 20 MET 20 25 25 MET MET A . n A 1 21 ILE 21 26 26 ILE ILE A . n A 1 22 GLN 22 27 27 GLN GLN A . n A 1 23 ARG 23 28 28 ARG ARG A . n A 1 24 TYR 24 29 29 TYR TYR A . n A 1 25 CYS 25 30 30 CYS CYS A . n A 1 26 LYS 26 31 31 LYS LYS A . n A 1 27 GLY 27 32 32 GLY GLY A . n A 1 28 ILE 28 33 33 ILE ILE A . n A 1 29 PHE 29 34 34 PHE PHE A . n A 1 30 THR 30 35 35 THR THR A . n A 1 31 LYS 31 36 36 LYS LYS A . n A 1 32 ASP 32 37 37 ASP ASP A . n A 1 33 TYR 33 38 38 TYR TYR A . n A 1 34 LYS 34 39 39 LYS LYS A . n A 1 35 LYS 35 40 40 LYS LYS A . n A 1 36 THR 36 41 41 THR THR A . n A 1 37 ILE 37 42 42 ILE ILE A . n A 1 38 GLY 38 43 43 GLY GLY A . n A 1 39 VAL 39 44 44 VAL VAL A . n A 1 40 ASP 40 45 45 ASP ASP A . n A 1 41 PHE 41 46 46 PHE PHE A . n A 1 42 LEU 42 47 47 LEU LEU A . n A 1 43 GLU 43 48 48 GLU GLU A . n A 1 44 ARG 44 49 49 ARG ARG A . n A 1 45 GLN 45 50 50 GLN GLN A . n A 1 46 ILE 46 51 51 ILE ILE A . n A 1 47 GLN 47 52 52 GLN GLN A . n A 1 48 VAL 48 53 53 VAL VAL A . n A 1 49 ASN 49 54 54 ASN ASN A . n A 1 50 ASP 50 55 55 ASP ASP A . n A 1 51 GLU 51 56 56 GLU GLU A . n A 1 52 ASP 52 57 57 ASP ASP A . n A 1 53 VAL 53 58 58 VAL VAL A . n A 1 54 ARG 54 59 59 ARG ARG A . n A 1 55 LEU 55 60 60 LEU LEU A . n A 1 56 MET 56 61 61 MET MET A . n A 1 57 LEU 57 62 62 LEU LEU A . n A 1 58 TRP 58 63 63 TRP TRP A . n A 1 59 ASP 59 64 64 ASP ASP A . n A 1 60 THR 60 65 65 THR THR A . n A 1 61 ALA 61 66 66 ALA ALA A . n A 1 62 GLY 62 67 67 GLY GLY A . n A 1 63 GLN 63 68 68 GLN GLN A . n A 1 64 GLU 64 69 ? ? ? A . n A 1 65 GLU 65 70 ? ? ? A . n A 1 66 PHE 66 71 ? ? ? A . n A 1 67 ASP 67 72 ? ? ? A . n A 1 68 ALA 68 73 ? ? ? A . n A 1 69 ILE 69 74 74 ILE ILE A . n A 1 70 THR 70 75 75 THR THR A . n A 1 71 LYS 71 76 76 LYS LYS A . n A 1 72 ALA 72 77 77 ALA ALA A . n A 1 73 TYR 73 78 78 TYR TYR A . n A 1 74 TYR 74 79 79 TYR TYR A . n A 1 75 ARG 75 80 80 ARG ARG A . n A 1 76 GLY 76 81 81 GLY GLY A . n A 1 77 ALA 77 82 82 ALA ALA A . n A 1 78 GLN 78 83 83 GLN GLN A . n A 1 79 ALA 79 84 84 ALA ALA A . n A 1 80 CYS 80 85 85 CYS CYS A . n A 1 81 VAL 81 86 86 VAL VAL A . n A 1 82 LEU 82 87 87 LEU LEU A . n A 1 83 VAL 83 88 88 VAL VAL A . n A 1 84 PHE 84 89 89 PHE PHE A . n A 1 85 SER 85 90 90 SER SER A . n A 1 86 THR 86 91 91 THR THR A . n A 1 87 THR 87 92 92 THR THR A . n A 1 88 ASP 88 93 93 ASP ASP A . n A 1 89 ARG 89 94 94 ARG ARG A . n A 1 90 GLU 90 95 95 GLU GLU A . n A 1 91 SER 91 96 96 SER SER A . n A 1 92 PHE 92 97 97 PHE PHE A . n A 1 93 GLU 93 98 98 GLU GLU A . n A 1 94 ALA 94 99 99 ALA ALA A . n A 1 95 VAL 95 100 100 VAL VAL A . n A 1 96 SER 96 101 101 SER SER A . n A 1 97 SER 97 102 102 SER SER A . n A 1 98 TRP 98 103 103 TRP TRP A . n A 1 99 ARG 99 104 104 ARG ARG A . n A 1 100 GLU 100 105 105 GLU GLU A . n A 1 101 LYS 101 106 106 LYS LYS A . n A 1 102 VAL 102 107 107 VAL VAL A . n A 1 103 VAL 103 108 108 VAL VAL A . n A 1 104 ALA 104 109 109 ALA ALA A . n A 1 105 GLU 105 110 110 GLU GLU A . n A 1 106 VAL 106 111 111 VAL VAL A . n A 1 107 GLY 107 112 112 GLY GLY A . n A 1 108 ASP 108 113 113 ASP ASP A . n A 1 109 ILE 109 114 114 ILE ILE A . n A 1 110 PRO 110 115 115 PRO PRO A . n A 1 111 THR 111 116 116 THR THR A . n A 1 112 VAL 112 117 117 VAL VAL A . n A 1 113 LEU 113 118 118 LEU LEU A . n A 1 114 VAL 114 119 119 VAL VAL A . n A 1 115 GLN 115 120 120 GLN GLN A . n A 1 116 ASN 116 121 121 ASN ASN A . n A 1 117 LYS 117 122 122 LYS LYS A . n A 1 118 ILE 118 123 123 ILE ILE A . n A 1 119 ASP 119 124 124 ASP ASP A . n A 1 120 LEU 120 125 125 LEU LEU A . n A 1 121 LEU 121 126 126 LEU LEU A . n A 1 122 ASP 122 127 127 ASP ASP A . n A 1 123 ASP 123 128 128 ASP ASP A . n A 1 124 SER 124 129 129 SER SER A . n A 1 125 CYS 125 130 130 CYS CYS A . n A 1 126 ILE 126 131 131 ILE ILE A . n A 1 127 LYS 127 132 132 LYS LYS A . n A 1 128 ASN 128 133 133 ASN ASN A . n A 1 129 GLU 129 134 134 GLU GLU A . n A 1 130 GLU 130 135 135 GLU GLU A . n A 1 131 ALA 131 136 136 ALA ALA A . n A 1 132 GLU 132 137 137 GLU GLU A . n A 1 133 ALA 133 138 138 ALA ALA A . n A 1 134 LEU 134 139 139 LEU LEU A . n A 1 135 ALA 135 140 140 ALA ALA A . n A 1 136 LYS 136 141 141 LYS LYS A . n A 1 137 ARG 137 142 142 ARG ARG A . n A 1 138 LEU 138 143 143 LEU LEU A . n A 1 139 LYS 139 144 144 LYS LYS A . n A 1 140 LEU 140 145 145 LEU LEU A . n A 1 141 ARG 141 146 146 ARG ARG A . n A 1 142 PHE 142 147 147 PHE PHE A . n A 1 143 TYR 143 148 148 TYR TYR A . n A 1 144 ARG 144 149 149 ARG ARG A . n A 1 145 THR 145 150 150 THR THR A . n A 1 146 SER 146 151 151 SER SER A . n A 1 147 VAL 147 152 152 VAL VAL A . n A 1 148 LYS 148 153 153 LYS LYS A . n A 1 149 GLU 149 154 154 GLU GLU A . n A 1 150 ASP 150 155 155 ASP ASP A . n A 1 151 LEU 151 156 156 LEU LEU A . n A 1 152 ASN 152 157 157 ASN ASN A . n A 1 153 VAL 153 158 158 VAL VAL A . n A 1 154 ASN 154 159 159 ASN ASN A . n A 1 155 GLU 155 160 160 GLU GLU A . n A 1 156 VAL 156 161 161 VAL VAL A . n A 1 157 PHE 157 162 162 PHE PHE A . n A 1 158 LYS 158 163 163 LYS LYS A . n A 1 159 TYR 159 164 164 TYR TYR A . n A 1 160 LEU 160 165 165 LEU LEU A . n A 1 161 ALA 161 166 166 ALA ALA A . n A 1 162 GLU 162 167 167 GLU GLU A . n A 1 163 LYS 163 168 168 LYS LYS A . n A 1 164 TYR 164 169 169 TYR TYR A . n A 1 165 LEU 165 170 170 LEU LEU A . n A 1 166 GLN 166 171 171 GLN GLN A . n A 1 167 LYS 167 172 ? ? ? A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GNP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GNP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP 1 201 201 GNP LIG A . C 3 MG 1 202 1 MG MG A . D 4 HOH 1 301 77 HOH HOH A . D 4 HOH 2 302 64 HOH HOH A . D 4 HOH 3 303 124 HOH HOH A . D 4 HOH 4 304 57 HOH HOH A . D 4 HOH 5 305 150 HOH HOH A . D 4 HOH 6 306 93 HOH HOH A . D 4 HOH 7 307 99 HOH HOH A . D 4 HOH 8 308 111 HOH HOH A . D 4 HOH 9 309 70 HOH HOH A . D 4 HOH 10 310 165 HOH HOH A . D 4 HOH 11 311 31 HOH HOH A . D 4 HOH 12 312 193 HOH HOH A . D 4 HOH 13 313 8 HOH HOH A . D 4 HOH 14 314 148 HOH HOH A . D 4 HOH 15 315 122 HOH HOH A . D 4 HOH 16 316 174 HOH HOH A . D 4 HOH 17 317 56 HOH HOH A . D 4 HOH 18 318 89 HOH HOH A . D 4 HOH 19 319 12 HOH HOH A . D 4 HOH 20 320 203 HOH HOH A . D 4 HOH 21 321 9 HOH HOH A . D 4 HOH 22 322 13 HOH HOH A . D 4 HOH 23 323 16 HOH HOH A . D 4 HOH 24 324 6 HOH HOH A . D 4 HOH 25 325 112 HOH HOH A . D 4 HOH 26 326 95 HOH HOH A . D 4 HOH 27 327 131 HOH HOH A . D 4 HOH 28 328 3 HOH HOH A . D 4 HOH 29 329 58 HOH HOH A . D 4 HOH 30 330 22 HOH HOH A . D 4 HOH 31 331 146 HOH HOH A . D 4 HOH 32 332 2 HOH HOH A . D 4 HOH 33 333 38 HOH HOH A . D 4 HOH 34 334 97 HOH HOH A . D 4 HOH 35 335 84 HOH HOH A . D 4 HOH 36 336 11 HOH HOH A . D 4 HOH 37 337 18 HOH HOH A . D 4 HOH 38 338 43 HOH HOH A . D 4 HOH 39 339 128 HOH HOH A . D 4 HOH 40 340 36 HOH HOH A . D 4 HOH 41 341 118 HOH HOH A . D 4 HOH 42 342 82 HOH HOH A . D 4 HOH 43 343 68 HOH HOH A . D 4 HOH 44 344 32 HOH HOH A . D 4 HOH 45 345 62 HOH HOH A . D 4 HOH 46 346 26 HOH HOH A . D 4 HOH 47 347 173 HOH HOH A . D 4 HOH 48 348 69 HOH HOH A . D 4 HOH 49 349 44 HOH HOH A . D 4 HOH 50 350 7 HOH HOH A . D 4 HOH 51 351 147 HOH HOH A . D 4 HOH 52 352 5 HOH HOH A . D 4 HOH 53 353 28 HOH HOH A . D 4 HOH 54 354 164 HOH HOH A . D 4 HOH 55 355 48 HOH HOH A . D 4 HOH 56 356 171 HOH HOH A . D 4 HOH 57 357 152 HOH HOH A . D 4 HOH 58 358 219 HOH HOH A . D 4 HOH 59 359 157 HOH HOH A . D 4 HOH 60 360 159 HOH HOH A . D 4 HOH 61 361 74 HOH HOH A . D 4 HOH 62 362 92 HOH HOH A . D 4 HOH 63 363 42 HOH HOH A . D 4 HOH 64 364 54 HOH HOH A . D 4 HOH 65 365 52 HOH HOH A . D 4 HOH 66 366 101 HOH HOH A . D 4 HOH 67 367 130 HOH HOH A . D 4 HOH 68 368 19 HOH HOH A . D 4 HOH 69 369 191 HOH HOH A . D 4 HOH 70 370 4 HOH HOH A . D 4 HOH 71 371 1 HOH HOH A . D 4 HOH 72 372 41 HOH HOH A . D 4 HOH 73 373 24 HOH HOH A . D 4 HOH 74 374 47 HOH HOH A . D 4 HOH 75 375 154 HOH HOH A . D 4 HOH 76 376 88 HOH HOH A . D 4 HOH 77 377 49 HOH HOH A . D 4 HOH 78 378 72 HOH HOH A . D 4 HOH 79 379 166 HOH HOH A . D 4 HOH 80 380 160 HOH HOH A . D 4 HOH 81 381 39 HOH HOH A . D 4 HOH 82 382 135 HOH HOH A . D 4 HOH 83 383 17 HOH HOH A . D 4 HOH 84 384 53 HOH HOH A . D 4 HOH 85 385 20 HOH HOH A . D 4 HOH 86 386 37 HOH HOH A . D 4 HOH 87 387 162 HOH HOH A . D 4 HOH 88 388 65 HOH HOH A . D 4 HOH 89 389 60 HOH HOH A . D 4 HOH 90 390 25 HOH HOH A . D 4 HOH 91 391 15 HOH HOH A . D 4 HOH 92 392 115 HOH HOH A . D 4 HOH 93 393 156 HOH HOH A . D 4 HOH 94 394 94 HOH HOH A . D 4 HOH 95 395 121 HOH HOH A . D 4 HOH 96 396 50 HOH HOH A . D 4 HOH 97 397 10 HOH HOH A . D 4 HOH 98 398 169 HOH HOH A . D 4 HOH 99 399 178 HOH HOH A . D 4 HOH 100 400 23 HOH HOH A . D 4 HOH 101 401 46 HOH HOH A . D 4 HOH 102 402 136 HOH HOH A . D 4 HOH 103 403 45 HOH HOH A . D 4 HOH 104 404 113 HOH HOH A . D 4 HOH 105 405 100 HOH HOH A . D 4 HOH 106 406 155 HOH HOH A . D 4 HOH 107 407 96 HOH HOH A . D 4 HOH 108 408 76 HOH HOH A . D 4 HOH 109 409 105 HOH HOH A . D 4 HOH 110 410 86 HOH HOH A . D 4 HOH 111 411 108 HOH HOH A . D 4 HOH 112 412 210 HOH HOH A . D 4 HOH 113 413 132 HOH HOH A . D 4 HOH 114 414 66 HOH HOH A . D 4 HOH 115 415 151 HOH HOH A . D 4 HOH 116 416 168 HOH HOH A . D 4 HOH 117 417 117 HOH HOH A . D 4 HOH 118 418 27 HOH HOH A . D 4 HOH 119 419 14 HOH HOH A . D 4 HOH 120 420 176 HOH HOH A . D 4 HOH 121 421 140 HOH HOH A . D 4 HOH 122 422 109 HOH HOH A . D 4 HOH 123 423 204 HOH HOH A . D 4 HOH 124 424 33 HOH HOH A . D 4 HOH 125 425 102 HOH HOH A . D 4 HOH 126 426 63 HOH HOH A . D 4 HOH 127 427 21 HOH HOH A . D 4 HOH 128 428 116 HOH HOH A . D 4 HOH 129 429 153 HOH HOH A . D 4 HOH 130 430 29 HOH HOH A . D 4 HOH 131 431 35 HOH HOH A . D 4 HOH 132 432 34 HOH HOH A . D 4 HOH 133 433 110 HOH HOH A . D 4 HOH 134 434 90 HOH HOH A . D 4 HOH 135 435 123 HOH HOH A . D 4 HOH 136 436 107 HOH HOH A . D 4 HOH 137 437 78 HOH HOH A . D 4 HOH 138 438 73 HOH HOH A . D 4 HOH 139 439 51 HOH HOH A . D 4 HOH 140 440 67 HOH HOH A . D 4 HOH 141 441 215 HOH HOH A . D 4 HOH 142 442 30 HOH HOH A . D 4 HOH 143 443 197 HOH HOH A . D 4 HOH 144 444 134 HOH HOH A . D 4 HOH 145 445 200 HOH HOH A . D 4 HOH 146 446 184 HOH HOH A . D 4 HOH 147 447 194 HOH HOH A . D 4 HOH 148 448 213 HOH HOH A . D 4 HOH 149 449 91 HOH HOH A . D 4 HOH 150 450 103 HOH HOH A . D 4 HOH 151 451 119 HOH HOH A . D 4 HOH 152 452 179 HOH HOH A . D 4 HOH 153 453 143 HOH HOH A . D 4 HOH 154 454 211 HOH HOH A . D 4 HOH 155 455 75 HOH HOH A . D 4 HOH 156 456 106 HOH HOH A . D 4 HOH 157 457 40 HOH HOH A . D 4 HOH 158 458 161 HOH HOH A . D 4 HOH 159 459 202 HOH HOH A . D 4 HOH 160 460 141 HOH HOH A . D 4 HOH 161 461 129 HOH HOH A . D 4 HOH 162 462 163 HOH HOH A . D 4 HOH 163 463 139 HOH HOH A . D 4 HOH 164 464 186 HOH HOH A . D 4 HOH 165 465 192 HOH HOH A . D 4 HOH 166 466 189 HOH HOH A . D 4 HOH 167 467 81 HOH HOH A . D 4 HOH 168 468 188 HOH HOH A . D 4 HOH 169 469 85 HOH HOH A . D 4 HOH 170 470 142 HOH HOH A . D 4 HOH 171 471 185 HOH HOH A . D 4 HOH 172 472 175 HOH HOH A . D 4 HOH 173 473 144 HOH HOH A . D 4 HOH 174 474 190 HOH HOH A . D 4 HOH 175 475 133 HOH HOH A . D 4 HOH 176 476 126 HOH HOH A . D 4 HOH 177 477 71 HOH HOH A . D 4 HOH 178 478 212 HOH HOH A . D 4 HOH 179 479 120 HOH HOH A . D 4 HOH 180 480 114 HOH HOH A . D 4 HOH 181 481 198 HOH HOH A . D 4 HOH 182 482 87 HOH HOH A . D 4 HOH 183 483 214 HOH HOH A . D 4 HOH 184 484 199 HOH HOH A . D 4 HOH 185 485 218 HOH HOH A . D 4 HOH 186 486 59 HOH HOH A . D 4 HOH 187 487 61 HOH HOH A . D 4 HOH 188 488 104 HOH HOH A . D 4 HOH 189 489 207 HOH HOH A . D 4 HOH 190 490 181 HOH HOH A . D 4 HOH 191 491 195 HOH HOH A . D 4 HOH 192 492 80 HOH HOH A . D 4 HOH 193 493 145 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 31 ? CD ? A LYS 26 CD 2 1 Y 1 A LYS 31 ? CE ? A LYS 26 CE 3 1 Y 1 A LYS 31 ? NZ ? A LYS 26 NZ 4 1 Y 1 A LYS 39 ? CD ? A LYS 34 CD 5 1 Y 1 A LYS 39 ? CE ? A LYS 34 CE 6 1 Y 1 A LYS 39 ? NZ ? A LYS 34 NZ 7 1 Y 1 A GLN 50 ? CG ? A GLN 45 CG 8 1 Y 1 A GLN 50 ? CD ? A GLN 45 CD 9 1 Y 1 A GLN 50 ? OE1 ? A GLN 45 OE1 10 1 Y 1 A GLN 50 ? NE2 ? A GLN 45 NE2 11 1 Y 1 A ASN 54 ? CG ? A ASN 49 CG 12 1 Y 1 A ASN 54 ? OD1 ? A ASN 49 OD1 13 1 Y 1 A ASN 54 ? ND2 ? A ASN 49 ND2 14 1 Y 1 A ASP 55 ? CG ? A ASP 50 CG 15 1 Y 1 A ASP 55 ? OD1 ? A ASP 50 OD1 16 1 Y 1 A ASP 55 ? OD2 ? A ASP 50 OD2 17 1 Y 1 A GLU 56 ? CG ? A GLU 51 CG 18 1 Y 1 A GLU 56 ? CD ? A GLU 51 CD 19 1 Y 1 A GLU 56 ? OE1 ? A GLU 51 OE1 20 1 Y 1 A GLU 56 ? OE2 ? A GLU 51 OE2 21 1 Y 1 A GLN 68 ? CG ? A GLN 63 CG 22 1 Y 1 A GLN 68 ? CD ? A GLN 63 CD 23 1 Y 1 A GLN 68 ? OE1 ? A GLN 63 OE1 24 1 Y 1 A GLN 68 ? NE2 ? A GLN 63 NE2 25 1 Y 1 A GLU 95 ? CD ? A GLU 90 CD 26 1 Y 1 A GLU 95 ? OE1 ? A GLU 90 OE1 27 1 Y 1 A GLU 95 ? OE2 ? A GLU 90 OE2 28 1 Y 1 A ASP 113 ? CG ? A ASP 108 CG 29 1 Y 1 A ASP 113 ? OD1 ? A ASP 108 OD1 30 1 Y 1 A ASP 113 ? OD2 ? A ASP 108 OD2 31 1 Y 1 A LEU 126 ? CG ? A LEU 121 CG 32 1 Y 1 A LEU 126 ? CD1 ? A LEU 121 CD1 33 1 Y 1 A LEU 126 ? CD2 ? A LEU 121 CD2 34 1 Y 1 A ASP 127 ? CG ? A ASP 122 CG 35 1 Y 1 A ASP 127 ? OD1 ? A ASP 122 OD1 36 1 Y 1 A ASP 127 ? OD2 ? A ASP 122 OD2 37 1 Y 1 A GLN 171 ? CG ? A GLN 166 CG 38 1 Y 1 A GLN 171 ? CD ? A GLN 166 CD 39 1 Y 1 A GLN 171 ? OE1 ? A GLN 166 OE1 40 1 Y 1 A GLN 171 ? NE2 ? A GLN 166 NE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8YIM _cell.details ? _cell.formula_units_Z ? _cell.length_a 60.523 _cell.length_a_esd ? _cell.length_b 60.523 _cell.length_b_esd ? _cell.length_c 93.920 _cell.length_c_esd ? _cell.volume 297940.831 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8YIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ;P 31 2" ; _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8YIM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Imidazole pH 8.0, 0.2M NaCl, 0.4M sodium phosphate monobasic/1.6M potassium phosphate dibasic' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU HyPix-6000HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-12-17 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU FR-X' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 9.90 _reflns.entry_id 8YIM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.35 _reflns.d_resolution_low 22.88 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 44414 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.50 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.37 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.141 _reflns.pdbx_Rpim_I_all 0.046 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.133 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.37 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2185 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.pdbx_chi_squared 0.52 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 2.260 _reflns_shell.pdbx_Rpim_I_all 0.862 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.724 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.087 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 16.58 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8YIM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.35 _refine.ls_d_res_low 22.88 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 44369 _refine.ls_number_reflns_R_free 2354 _refine.ls_number_reflns_R_work 42015 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free 5.31 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1513 _refine.ls_R_factor_R_free 0.1794 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1496 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.5251 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1110 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.35 _refine_hist.d_res_low 22.88 _refine_hist.number_atoms_solvent 193 _refine_hist.number_atoms_total 1468 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1242 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0027 ? 1348 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.6805 ? 1831 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0648 ? 212 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0025 ? 229 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 14.2101 ? 516 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.35 1.38 . . 161 2438 100.00 . . . . 0.1898 . . . . . . . . . . . 0.2348 'X-RAY DIFFRACTION' 1.38 1.41 . . 152 2424 100.00 . . . . 0.1743 . . . . . . . . . . . 0.1961 'X-RAY DIFFRACTION' 1.41 1.44 . . 132 2434 100.00 . . . . 0.1567 . . . . . . . . . . . 0.2009 'X-RAY DIFFRACTION' 1.44 1.48 . . 130 2438 100.00 . . . . 0.1423 . . . . . . . . . . . 0.2009 'X-RAY DIFFRACTION' 1.48 1.52 . . 123 2451 100.00 . . . . 0.1346 . . . . . . . . . . . 0.2045 'X-RAY DIFFRACTION' 1.52 1.56 . . 95 2476 100.00 . . . . 0.1300 . . . . . . . . . . . 0.1625 'X-RAY DIFFRACTION' 1.56 1.61 . . 141 2417 100.00 . . . . 0.1266 . . . . . . . . . . . 0.1727 'X-RAY DIFFRACTION' 1.61 1.67 . . 118 2492 100.00 . . . . 0.1281 . . . . . . . . . . . 0.1611 'X-RAY DIFFRACTION' 1.67 1.74 . . 144 2453 100.00 . . . . 0.1275 . . . . . . . . . . . 0.1825 'X-RAY DIFFRACTION' 1.74 1.81 . . 123 2459 100.00 . . . . 0.1350 . . . . . . . . . . . 0.1784 'X-RAY DIFFRACTION' 1.81 1.91 . . 146 2447 100.00 . . . . 0.1391 . . . . . . . . . . . 0.1693 'X-RAY DIFFRACTION' 1.91 2.03 . . 132 2500 100.00 . . . . 0.1353 . . . . . . . . . . . 0.1637 'X-RAY DIFFRACTION' 2.03 2.19 . . 141 2468 100.00 . . . . 0.1375 . . . . . . . . . . . 0.1625 'X-RAY DIFFRACTION' 2.19 2.41 . . 122 2490 100.00 . . . . 0.1477 . . . . . . . . . . . 0.1684 'X-RAY DIFFRACTION' 2.41 2.75 . . 165 2487 100.00 . . . . 0.1640 . . . . . . . . . . . 0.1947 'X-RAY DIFFRACTION' 2.75 3.47 . . 140 2523 100.00 . . . . 0.1653 . . . . . . . . . . . 0.1820 'X-RAY DIFFRACTION' 3.47 22.88 . . 189 2618 99.96 . . . . 0.1592 . . . . . . . . . . . 0.1753 # _struct.entry_id 8YIM _struct.title 'Crystal Structure of Human Rab23 in complex with GMPPNP (1.35 Angstroms Resolution)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8YIM _struct_keywords.text 'Small GTPase Rossmann Fold, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RAB23_HUMAN _struct_ref.pdbx_db_accession Q9ULC3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV LVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA EKYLQK ; _struct_ref.pdbx_align_begin 7 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8YIM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 167 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ULC3 _struct_ref_seq.db_align_beg 7 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 172 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 7 _struct_ref_seq.pdbx_auth_seq_align_end 172 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 8YIM _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9ULC3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 6 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1010 ? 1 MORE -14 ? 1 'SSA (A^2)' 7860 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 16 ? GLY A 27 ? GLY A 21 GLY A 32 1 ? 12 HELX_P HELX_P2 AA2 THR A 70 ? ARG A 75 ? THR A 75 ARG A 80 1 ? 6 HELX_P HELX_P3 AA3 ASP A 88 ? ALA A 94 ? ASP A 93 ALA A 99 1 ? 7 HELX_P HELX_P4 AA4 ALA A 94 ? GLY A 107 ? ALA A 99 GLY A 112 1 ? 14 HELX_P HELX_P5 AA5 LYS A 117 ? SER A 124 ? LYS A 122 SER A 129 5 ? 8 HELX_P HELX_P6 AA6 LYS A 127 ? LYS A 139 ? LYS A 132 LYS A 144 1 ? 13 HELX_P HELX_P7 AA7 ASN A 152 ? GLN A 166 ? ASN A 157 GLN A 171 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 18 OG ? ? ? 1_555 C MG . MG ? ? A SER 23 A MG 202 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc2 metalc ? ? A THR 36 OG1 ? ? ? 1_555 C MG . MG ? ? A THR 41 A MG 202 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc3 metalc ? ? B GNP . O1G ? ? ? 1_555 C MG . MG ? ? A GNP 201 A MG 202 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc4 metalc ? ? B GNP . O2B ? ? ? 1_555 C MG . MG ? ? A GNP 201 A MG 202 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 202 A HOH 315 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 202 A HOH 331 1_555 ? ? ? ? ? ? ? 2.103 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 18 ? A SER 23 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 OG1 ? A THR 36 ? A THR 41 ? 1_555 78.2 ? 2 OG ? A SER 18 ? A SER 23 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O1G ? B GNP . ? A GNP 201 ? 1_555 172.5 ? 3 OG1 ? A THR 36 ? A THR 41 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O1G ? B GNP . ? A GNP 201 ? 1_555 94.9 ? 4 OG ? A SER 18 ? A SER 23 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O2B ? B GNP . ? A GNP 201 ? 1_555 90.4 ? 5 OG1 ? A THR 36 ? A THR 41 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O2B ? B GNP . ? A GNP 201 ? 1_555 168.4 ? 6 O1G ? B GNP . ? A GNP 201 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O2B ? B GNP . ? A GNP 201 ? 1_555 96.6 ? 7 OG ? A SER 18 ? A SER 23 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 315 ? 1_555 89.2 ? 8 OG1 ? A THR 36 ? A THR 41 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 315 ? 1_555 90.4 ? 9 O1G ? B GNP . ? A GNP 201 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 315 ? 1_555 93.7 ? 10 O2B ? B GNP . ? A GNP 201 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 315 ? 1_555 87.5 ? 11 OG ? A SER 18 ? A SER 23 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 331 ? 1_555 85.2 ? 12 OG1 ? A THR 36 ? A THR 41 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 331 ? 1_555 91.2 ? 13 O1G ? B GNP . ? A GNP 201 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 331 ? 1_555 92.1 ? 14 O2B ? B GNP . ? A GNP 201 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 331 ? 1_555 89.8 ? 15 O ? D HOH . ? A HOH 315 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 331 ? 1_555 173.8 ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 39 ? GLN A 47 ? VAL A 44 GLN A 52 AA1 2 ASP A 52 ? THR A 60 ? ASP A 57 THR A 65 AA1 3 VAL A 3 ? VAL A 10 ? VAL A 8 VAL A 15 AA1 4 ALA A 79 ? SER A 85 ? ALA A 84 SER A 90 AA1 5 THR A 111 ? ASN A 116 ? THR A 116 ASN A 121 AA1 6 ARG A 141 ? ARG A 144 ? ARG A 146 ARG A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 44 ? N ARG A 49 O LEU A 55 ? O LEU A 60 AA1 2 3 O MET A 56 ? O MET A 61 N ILE A 5 ? N ILE A 10 AA1 3 4 N VAL A 10 ? N VAL A 15 O VAL A 83 ? O VAL A 88 AA1 4 5 N LEU A 82 ? N LEU A 87 O VAL A 114 ? O VAL A 119 AA1 5 6 N LEU A 113 ? N LEU A 118 O ARG A 141 ? O ARG A 146 # _pdbx_entry_details.entry_id 8YIM _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 54 ? ? 54.65 -121.96 2 1 ASP A 55 ? ? -112.73 63.98 3 1 LEU A 125 ? ? -94.39 35.01 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 486 ? D HOH . 2 1 A HOH 492 ? D HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 6 ? A SER 1 2 1 Y 1 A GLU 69 ? A GLU 64 3 1 Y 1 A GLU 70 ? A GLU 65 4 1 Y 1 A PHE 71 ? A PHE 66 5 1 Y 1 A ASP 72 ? A ASP 67 6 1 Y 1 A ALA 73 ? A ALA 68 7 1 Y 1 A LYS 172 ? A LYS 167 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GNP PG P N N 137 GNP O1G O N N 138 GNP O2G O N N 139 GNP O3G O N N 140 GNP N3B N N N 141 GNP PB P N R 142 GNP O1B O N N 143 GNP O2B O N N 144 GNP O3A O N N 145 GNP PA P N S 146 GNP O1A O N N 147 GNP O2A O N N 148 GNP "O5'" O N N 149 GNP "C5'" C N N 150 GNP "C4'" C N R 151 GNP "O4'" O N N 152 GNP "C3'" C N S 153 GNP "O3'" O N N 154 GNP "C2'" C N R 155 GNP "O2'" O N N 156 GNP "C1'" C N R 157 GNP N9 N Y N 158 GNP C8 C Y N 159 GNP N7 N Y N 160 GNP C5 C Y N 161 GNP C6 C Y N 162 GNP O6 O N N 163 GNP N1 N Y N 164 GNP C2 C Y N 165 GNP N2 N N N 166 GNP N3 N Y N 167 GNP C4 C Y N 168 GNP HOG2 H N N 169 GNP HOG3 H N N 170 GNP HNB3 H N N 171 GNP HOB2 H N N 172 GNP HOA2 H N N 173 GNP "H5'2" H N N 174 GNP "H5'1" H N N 175 GNP "H4'" H N N 176 GNP "H3'" H N N 177 GNP "HO3'" H N N 178 GNP "H2'" H N N 179 GNP "HO2'" H N N 180 GNP "H1'" H N N 181 GNP H8 H N N 182 GNP HN1 H N N 183 GNP HN21 H N N 184 GNP HN22 H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 ILE N N N N 189 ILE CA C N S 190 ILE C C N N 191 ILE O O N N 192 ILE CB C N S 193 ILE CG1 C N N 194 ILE CG2 C N N 195 ILE CD1 C N N 196 ILE OXT O N N 197 ILE H H N N 198 ILE H2 H N N 199 ILE HA H N N 200 ILE HB H N N 201 ILE HG12 H N N 202 ILE HG13 H N N 203 ILE HG21 H N N 204 ILE HG22 H N N 205 ILE HG23 H N N 206 ILE HD11 H N N 207 ILE HD12 H N N 208 ILE HD13 H N N 209 ILE HXT H N N 210 LEU N N N N 211 LEU CA C N S 212 LEU C C N N 213 LEU O O N N 214 LEU CB C N N 215 LEU CG C N N 216 LEU CD1 C N N 217 LEU CD2 C N N 218 LEU OXT O N N 219 LEU H H N N 220 LEU H2 H N N 221 LEU HA H N N 222 LEU HB2 H N N 223 LEU HB3 H N N 224 LEU HG H N N 225 LEU HD11 H N N 226 LEU HD12 H N N 227 LEU HD13 H N N 228 LEU HD21 H N N 229 LEU HD22 H N N 230 LEU HD23 H N N 231 LEU HXT H N N 232 LYS N N N N 233 LYS CA C N S 234 LYS C C N N 235 LYS O O N N 236 LYS CB C N N 237 LYS CG C N N 238 LYS CD C N N 239 LYS CE C N N 240 LYS NZ N N N 241 LYS OXT O N N 242 LYS H H N N 243 LYS H2 H N N 244 LYS HA H N N 245 LYS HB2 H N N 246 LYS HB3 H N N 247 LYS HG2 H N N 248 LYS HG3 H N N 249 LYS HD2 H N N 250 LYS HD3 H N N 251 LYS HE2 H N N 252 LYS HE3 H N N 253 LYS HZ1 H N N 254 LYS HZ2 H N N 255 LYS HZ3 H N N 256 LYS HXT H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 MG MG MG N N 278 PHE N N N N 279 PHE CA C N S 280 PHE C C N N 281 PHE O O N N 282 PHE CB C N N 283 PHE CG C Y N 284 PHE CD1 C Y N 285 PHE CD2 C Y N 286 PHE CE1 C Y N 287 PHE CE2 C Y N 288 PHE CZ C Y N 289 PHE OXT O N N 290 PHE H H N N 291 PHE H2 H N N 292 PHE HA H N N 293 PHE HB2 H N N 294 PHE HB3 H N N 295 PHE HD1 H N N 296 PHE HD2 H N N 297 PHE HE1 H N N 298 PHE HE2 H N N 299 PHE HZ H N N 300 PHE HXT H N N 301 PRO N N N N 302 PRO CA C N S 303 PRO C C N N 304 PRO O O N N 305 PRO CB C N N 306 PRO CG C N N 307 PRO CD C N N 308 PRO OXT O N N 309 PRO H H N N 310 PRO HA H N N 311 PRO HB2 H N N 312 PRO HB3 H N N 313 PRO HG2 H N N 314 PRO HG3 H N N 315 PRO HD2 H N N 316 PRO HD3 H N N 317 PRO HXT H N N 318 SER N N N N 319 SER CA C N S 320 SER C C N N 321 SER O O N N 322 SER CB C N N 323 SER OG O N N 324 SER OXT O N N 325 SER H H N N 326 SER H2 H N N 327 SER HA H N N 328 SER HB2 H N N 329 SER HB3 H N N 330 SER HG H N N 331 SER HXT H N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TRP N N N N 350 TRP CA C N S 351 TRP C C N N 352 TRP O O N N 353 TRP CB C N N 354 TRP CG C Y N 355 TRP CD1 C Y N 356 TRP CD2 C Y N 357 TRP NE1 N Y N 358 TRP CE2 C Y N 359 TRP CE3 C Y N 360 TRP CZ2 C Y N 361 TRP CZ3 C Y N 362 TRP CH2 C Y N 363 TRP OXT O N N 364 TRP H H N N 365 TRP H2 H N N 366 TRP HA H N N 367 TRP HB2 H N N 368 TRP HB3 H N N 369 TRP HD1 H N N 370 TRP HE1 H N N 371 TRP HE3 H N N 372 TRP HZ2 H N N 373 TRP HZ3 H N N 374 TRP HH2 H N N 375 TRP HXT H N N 376 TYR N N N N 377 TYR CA C N S 378 TYR C C N N 379 TYR O O N N 380 TYR CB C N N 381 TYR CG C Y N 382 TYR CD1 C Y N 383 TYR CD2 C Y N 384 TYR CE1 C Y N 385 TYR CE2 C Y N 386 TYR CZ C Y N 387 TYR OH O N N 388 TYR OXT O N N 389 TYR H H N N 390 TYR H2 H N N 391 TYR HA H N N 392 TYR HB2 H N N 393 TYR HB3 H N N 394 TYR HD1 H N N 395 TYR HD2 H N N 396 TYR HE1 H N N 397 TYR HE2 H N N 398 TYR HH H N N 399 TYR HXT H N N 400 VAL N N N N 401 VAL CA C N S 402 VAL C C N N 403 VAL O O N N 404 VAL CB C N N 405 VAL CG1 C N N 406 VAL CG2 C N N 407 VAL OXT O N N 408 VAL H H N N 409 VAL H2 H N N 410 VAL HA H N N 411 VAL HB H N N 412 VAL HG11 H N N 413 VAL HG12 H N N 414 VAL HG13 H N N 415 VAL HG21 H N N 416 VAL HG22 H N N 417 VAL HG23 H N N 418 VAL HXT H N N 419 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GNP PG O1G doub N N 129 GNP PG O2G sing N N 130 GNP PG O3G sing N N 131 GNP PG N3B sing N N 132 GNP O2G HOG2 sing N N 133 GNP O3G HOG3 sing N N 134 GNP N3B PB sing N N 135 GNP N3B HNB3 sing N N 136 GNP PB O1B doub N N 137 GNP PB O2B sing N N 138 GNP PB O3A sing N N 139 GNP O2B HOB2 sing N N 140 GNP O3A PA sing N N 141 GNP PA O1A doub N N 142 GNP PA O2A sing N N 143 GNP PA "O5'" sing N N 144 GNP O2A HOA2 sing N N 145 GNP "O5'" "C5'" sing N N 146 GNP "C5'" "C4'" sing N N 147 GNP "C5'" "H5'2" sing N N 148 GNP "C5'" "H5'1" sing N N 149 GNP "C4'" "O4'" sing N N 150 GNP "C4'" "C3'" sing N N 151 GNP "C4'" "H4'" sing N N 152 GNP "O4'" "C1'" sing N N 153 GNP "C3'" "O3'" sing N N 154 GNP "C3'" "C2'" sing N N 155 GNP "C3'" "H3'" sing N N 156 GNP "O3'" "HO3'" sing N N 157 GNP "C2'" "O2'" sing N N 158 GNP "C2'" "C1'" sing N N 159 GNP "C2'" "H2'" sing N N 160 GNP "O2'" "HO2'" sing N N 161 GNP "C1'" N9 sing N N 162 GNP "C1'" "H1'" sing N N 163 GNP N9 C8 sing Y N 164 GNP N9 C4 sing Y N 165 GNP C8 N7 doub Y N 166 GNP C8 H8 sing N N 167 GNP N7 C5 sing Y N 168 GNP C5 C6 sing Y N 169 GNP C5 C4 doub Y N 170 GNP C6 O6 doub N N 171 GNP C6 N1 sing Y N 172 GNP N1 C2 sing Y N 173 GNP N1 HN1 sing N N 174 GNP C2 N2 sing N N 175 GNP C2 N3 doub Y N 176 GNP N2 HN21 sing N N 177 GNP N2 HN22 sing N N 178 GNP N3 C4 sing Y N 179 HOH O H1 sing N N 180 HOH O H2 sing N N 181 ILE N CA sing N N 182 ILE N H sing N N 183 ILE N H2 sing N N 184 ILE CA C sing N N 185 ILE CA CB sing N N 186 ILE CA HA sing N N 187 ILE C O doub N N 188 ILE C OXT sing N N 189 ILE CB CG1 sing N N 190 ILE CB CG2 sing N N 191 ILE CB HB sing N N 192 ILE CG1 CD1 sing N N 193 ILE CG1 HG12 sing N N 194 ILE CG1 HG13 sing N N 195 ILE CG2 HG21 sing N N 196 ILE CG2 HG22 sing N N 197 ILE CG2 HG23 sing N N 198 ILE CD1 HD11 sing N N 199 ILE CD1 HD12 sing N N 200 ILE CD1 HD13 sing N N 201 ILE OXT HXT sing N N 202 LEU N CA sing N N 203 LEU N H sing N N 204 LEU N H2 sing N N 205 LEU CA C sing N N 206 LEU CA CB sing N N 207 LEU CA HA sing N N 208 LEU C O doub N N 209 LEU C OXT sing N N 210 LEU CB CG sing N N 211 LEU CB HB2 sing N N 212 LEU CB HB3 sing N N 213 LEU CG CD1 sing N N 214 LEU CG CD2 sing N N 215 LEU CG HG sing N N 216 LEU CD1 HD11 sing N N 217 LEU CD1 HD12 sing N N 218 LEU CD1 HD13 sing N N 219 LEU CD2 HD21 sing N N 220 LEU CD2 HD22 sing N N 221 LEU CD2 HD23 sing N N 222 LEU OXT HXT sing N N 223 LYS N CA sing N N 224 LYS N H sing N N 225 LYS N H2 sing N N 226 LYS CA C sing N N 227 LYS CA CB sing N N 228 LYS CA HA sing N N 229 LYS C O doub N N 230 LYS C OXT sing N N 231 LYS CB CG sing N N 232 LYS CB HB2 sing N N 233 LYS CB HB3 sing N N 234 LYS CG CD sing N N 235 LYS CG HG2 sing N N 236 LYS CG HG3 sing N N 237 LYS CD CE sing N N 238 LYS CD HD2 sing N N 239 LYS CD HD3 sing N N 240 LYS CE NZ sing N N 241 LYS CE HE2 sing N N 242 LYS CE HE3 sing N N 243 LYS NZ HZ1 sing N N 244 LYS NZ HZ2 sing N N 245 LYS NZ HZ3 sing N N 246 LYS OXT HXT sing N N 247 MET N CA sing N N 248 MET N H sing N N 249 MET N H2 sing N N 250 MET CA C sing N N 251 MET CA CB sing N N 252 MET CA HA sing N N 253 MET C O doub N N 254 MET C OXT sing N N 255 MET CB CG sing N N 256 MET CB HB2 sing N N 257 MET CB HB3 sing N N 258 MET CG SD sing N N 259 MET CG HG2 sing N N 260 MET CG HG3 sing N N 261 MET SD CE sing N N 262 MET CE HE1 sing N N 263 MET CE HE2 sing N N 264 MET CE HE3 sing N N 265 MET OXT HXT sing N N 266 PHE N CA sing N N 267 PHE N H sing N N 268 PHE N H2 sing N N 269 PHE CA C sing N N 270 PHE CA CB sing N N 271 PHE CA HA sing N N 272 PHE C O doub N N 273 PHE C OXT sing N N 274 PHE CB CG sing N N 275 PHE CB HB2 sing N N 276 PHE CB HB3 sing N N 277 PHE CG CD1 doub Y N 278 PHE CG CD2 sing Y N 279 PHE CD1 CE1 sing Y N 280 PHE CD1 HD1 sing N N 281 PHE CD2 CE2 doub Y N 282 PHE CD2 HD2 sing N N 283 PHE CE1 CZ doub Y N 284 PHE CE1 HE1 sing N N 285 PHE CE2 CZ sing Y N 286 PHE CE2 HE2 sing N N 287 PHE CZ HZ sing N N 288 PHE OXT HXT sing N N 289 PRO N CA sing N N 290 PRO N CD sing N N 291 PRO N H sing N N 292 PRO CA C sing N N 293 PRO CA CB sing N N 294 PRO CA HA sing N N 295 PRO C O doub N N 296 PRO C OXT sing N N 297 PRO CB CG sing N N 298 PRO CB HB2 sing N N 299 PRO CB HB3 sing N N 300 PRO CG CD sing N N 301 PRO CG HG2 sing N N 302 PRO CG HG3 sing N N 303 PRO CD HD2 sing N N 304 PRO CD HD3 sing N N 305 PRO OXT HXT sing N N 306 SER N CA sing N N 307 SER N H sing N N 308 SER N H2 sing N N 309 SER CA C sing N N 310 SER CA CB sing N N 311 SER CA HA sing N N 312 SER C O doub N N 313 SER C OXT sing N N 314 SER CB OG sing N N 315 SER CB HB2 sing N N 316 SER CB HB3 sing N N 317 SER OG HG sing N N 318 SER OXT HXT sing N N 319 THR N CA sing N N 320 THR N H sing N N 321 THR N H2 sing N N 322 THR CA C sing N N 323 THR CA CB sing N N 324 THR CA HA sing N N 325 THR C O doub N N 326 THR C OXT sing N N 327 THR CB OG1 sing N N 328 THR CB CG2 sing N N 329 THR CB HB sing N N 330 THR OG1 HG1 sing N N 331 THR CG2 HG21 sing N N 332 THR CG2 HG22 sing N N 333 THR CG2 HG23 sing N N 334 THR OXT HXT sing N N 335 TRP N CA sing N N 336 TRP N H sing N N 337 TRP N H2 sing N N 338 TRP CA C sing N N 339 TRP CA CB sing N N 340 TRP CA HA sing N N 341 TRP C O doub N N 342 TRP C OXT sing N N 343 TRP CB CG sing N N 344 TRP CB HB2 sing N N 345 TRP CB HB3 sing N N 346 TRP CG CD1 doub Y N 347 TRP CG CD2 sing Y N 348 TRP CD1 NE1 sing Y N 349 TRP CD1 HD1 sing N N 350 TRP CD2 CE2 doub Y N 351 TRP CD2 CE3 sing Y N 352 TRP NE1 CE2 sing Y N 353 TRP NE1 HE1 sing N N 354 TRP CE2 CZ2 sing Y N 355 TRP CE3 CZ3 doub Y N 356 TRP CE3 HE3 sing N N 357 TRP CZ2 CH2 doub Y N 358 TRP CZ2 HZ2 sing N N 359 TRP CZ3 CH2 sing Y N 360 TRP CZ3 HZ3 sing N N 361 TRP CH2 HH2 sing N N 362 TRP OXT HXT sing N N 363 TYR N CA sing N N 364 TYR N H sing N N 365 TYR N H2 sing N N 366 TYR CA C sing N N 367 TYR CA CB sing N N 368 TYR CA HA sing N N 369 TYR C O doub N N 370 TYR C OXT sing N N 371 TYR CB CG sing N N 372 TYR CB HB2 sing N N 373 TYR CB HB3 sing N N 374 TYR CG CD1 doub Y N 375 TYR CG CD2 sing Y N 376 TYR CD1 CE1 sing Y N 377 TYR CD1 HD1 sing N N 378 TYR CD2 CE2 doub Y N 379 TYR CD2 HD2 sing N N 380 TYR CE1 CZ doub Y N 381 TYR CE1 HE1 sing N N 382 TYR CE2 CZ sing Y N 383 TYR CE2 HE2 sing N N 384 TYR CZ OH sing N N 385 TYR OH HH sing N N 386 TYR OXT HXT sing N N 387 VAL N CA sing N N 388 VAL N H sing N N 389 VAL N H2 sing N N 390 VAL CA C sing N N 391 VAL CA CB sing N N 392 VAL CA HA sing N N 393 VAL C O doub N N 394 VAL C OXT sing N N 395 VAL CB CG1 sing N N 396 VAL CB CG2 sing N N 397 VAL CB HB sing N N 398 VAL CG1 HG11 sing N N 399 VAL CG1 HG12 sing N N 400 VAL CG1 HG13 sing N N 401 VAL CG2 HG21 sing N N 402 VAL CG2 HG22 sing N N 403 VAL CG2 HG23 sing N N 404 VAL OXT HXT sing N N 405 # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country 'Hong Kong' _pdbx_audit_support.grant_number 'HKBU Faculty of Science Seed Money' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'Structure of human Rab23-GDP complex' # _atom_sites.entry_id 8YIM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.016523 _atom_sites.fract_transf_matrix[1][2] 0.009539 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019079 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010647 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_