HEADER METAL TRANSPORT/IMMUNE SYSTEM 01-MAR-24 8YJ8 TITLE CHARACERIZATION OF A NOVEL FORMAT SCFVXVHH SINGLE-CHAIN BIPARATOPIC TITLE 2 ANTIBODY AGAINST A METAL BINDING PROTEIN, MTSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN MTSA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VHH43; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: MTSA, SPY_0453, M5005_SPY0368; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 9 ORGANISM_TAXID: 30538; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBODY, METAL TRANSPORT, METAL TRANSPORT-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.ITO,S.NAGATOISHI,M.NAKAKIDO,K.TSUMOTO REVDAT 2 26-JUN-24 8YJ8 1 REMARK ATOM REVDAT 1 19-JUN-24 8YJ8 0 JRNL AUTH R.ASANO,M.TAKEUCHI,M.NAKAKIDO,S.ITO,C.AIKAWA,T.YOKOYAMA, JRNL AUTH 2 A.SENOO,G.UENO,S.NAGATOISHI,Y.TANAKA,I.NAKAGAWA,K.TSUMOTO JRNL TITL CHARACTERIZATION OF A NOVEL FORMAT SCFV×VHH JRNL TITL 2 SINGLE-CHAIN BIPARATOPIC ANTIBODY AGAINST METAL BINDING JRNL TITL 3 PROTEIN MTSA. JRNL REF PROTEIN SCI. V. 33 E5017 2024 JRNL REFN ESSN 1469-896X JRNL PMID 38747382 JRNL DOI 10.1002/PRO.5017 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 101572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5700 - 5.1300 0.96 3222 170 0.1622 0.1892 REMARK 3 2 5.1300 - 4.0700 0.99 3287 164 0.1344 0.1598 REMARK 3 3 4.0700 - 3.5600 0.99 3234 183 0.1527 0.2047 REMARK 3 4 3.5600 - 3.2300 0.99 3230 170 0.1689 0.2248 REMARK 3 5 3.2300 - 3.0000 0.99 3245 156 0.1816 0.2211 REMARK 3 6 3.0000 - 2.8300 1.00 3250 169 0.1923 0.2451 REMARK 3 7 2.8300 - 2.6800 1.00 3221 179 0.1887 0.2176 REMARK 3 8 2.6800 - 2.5700 1.00 3205 188 0.1982 0.2286 REMARK 3 9 2.5700 - 2.4700 1.00 3288 150 0.1918 0.2046 REMARK 3 10 2.4700 - 2.3800 1.00 3216 170 0.1958 0.2669 REMARK 3 11 2.3800 - 2.3100 1.00 3209 149 0.1924 0.2303 REMARK 3 12 2.3100 - 2.2400 1.00 3213 189 0.1983 0.2408 REMARK 3 13 2.2400 - 2.1800 1.00 3202 204 0.1982 0.2154 REMARK 3 14 2.1800 - 2.1300 1.00 3225 154 0.1970 0.2198 REMARK 3 15 2.1300 - 2.0800 1.00 3195 163 0.1970 0.2482 REMARK 3 16 2.0800 - 2.0400 1.00 3236 164 0.2055 0.2329 REMARK 3 17 2.0400 - 2.0000 1.00 3251 176 0.2203 0.2781 REMARK 3 18 2.0000 - 1.9600 1.00 3195 156 0.2453 0.3127 REMARK 3 19 1.9600 - 1.9200 1.00 3252 168 0.2446 0.2924 REMARK 3 20 1.9200 - 1.8900 1.00 3215 151 0.2620 0.3259 REMARK 3 21 1.8900 - 1.8600 1.00 3231 164 0.2438 0.2679 REMARK 3 22 1.8600 - 1.8300 1.00 3233 157 0.2487 0.3069 REMARK 3 23 1.8300 - 1.8100 1.00 3180 166 0.2508 0.3228 REMARK 3 24 1.8100 - 1.7800 1.00 3264 169 0.2675 0.3037 REMARK 3 25 1.7800 - 1.7600 1.00 3135 170 0.2918 0.3814 REMARK 3 26 1.7600 - 1.7300 1.00 3287 177 0.2965 0.3314 REMARK 3 27 1.7300 - 1.7100 1.00 3160 187 0.3099 0.3162 REMARK 3 28 1.7100 - 1.6900 1.00 3211 170 0.3353 0.3754 REMARK 3 29 1.6900 - 1.6700 1.00 3200 161 0.3766 0.4125 REMARK 3 30 1.6700 - 1.6500 0.94 3016 170 0.3896 0.3952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.253 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.673 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6480 REMARK 3 ANGLE : 0.865 8758 REMARK 3 CHIRALITY : 0.055 959 REMARK 3 PLANARITY : 0.007 1132 REMARK 3 DIHEDRAL : 5.967 874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300045564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.720 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.69 REMARK 200 R MERGE FOR SHELL (I) : 1.11600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HH8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 20% W/V PEG REMARK 280 3,350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 146.46550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.04150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 146.46550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.04150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 58.08300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 522 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 15 REMARK 465 ALA C 127 REMARK 465 GLY C 128 REMARK 465 HIS C 129 REMARK 465 HIS C 130 REMARK 465 HIS C 131 REMARK 465 HIS C 132 REMARK 465 HIS C 133 REMARK 465 HIS C 134 REMARK 465 GLU D 1 REMARK 465 ALA D 127 REMARK 465 GLY D 128 REMARK 465 HIS D 129 REMARK 465 HIS D 130 REMARK 465 HIS D 131 REMARK 465 HIS D 132 REMARK 465 HIS D 133 REMARK 465 HIS D 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 61 CG1 CG2 REMARK 470 PRO A 148 CG CD REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 VAL B 61 CG1 CG2 REMARK 470 SER B 251 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 663 O HOH B 690 2.10 REMARK 500 O HOH B 617 O HOH B 651 2.12 REMARK 500 OE1 GLN B 142 O HOH B 401 2.13 REMARK 500 OE1 GLU B 55 O HOH B 402 2.15 REMARK 500 O LYS C 65 O HOH C 201 2.15 REMARK 500 OE1 GLU A 214 O HOH A 401 2.16 REMARK 500 O HOH B 556 O HOH B 570 2.16 REMARK 500 O HOH C 223 O HOH C 302 2.17 REMARK 500 O HOH B 426 O HOH B 546 2.18 REMARK 500 O HOH B 465 O HOH B 638 2.18 REMARK 500 OE1 GLU A 290 O HOH A 402 2.18 REMARK 500 O HOH A 408 O HOH A 561 2.18 REMARK 500 O HOH C 201 O HOH C 266 2.19 REMARK 500 OE2 GLU A 248 O HOH A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 403 O HOH D 208 4545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 75 49.14 38.47 REMARK 500 ASN A 76 32.66 70.45 REMARK 500 GLN A 82 15.44 58.58 REMARK 500 HIS A 124 46.60 -85.71 REMARK 500 GLU A 181 47.80 -63.71 REMARK 500 THR A 264 -67.45 -123.76 REMARK 500 ILE B 75 48.47 36.43 REMARK 500 LYS B 98 -56.52 -125.68 REMARK 500 THR B 264 -69.88 -123.23 REMARK 500 ALA C 55 0.88 84.15 REMARK 500 ALA D 55 2.50 84.27 REMARK 500 ALA D 92 165.29 178.81 REMARK 500 ASP D 107 -87.75 -109.02 REMARK 500 ASP D 107 -82.39 -104.95 REMARK 500 SER D 108 -77.79 -56.29 REMARK 500 SER D 108 -86.36 -63.66 REMARK 500 ASP D 109 -163.65 37.25 REMARK 500 ASP D 109 -162.15 47.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 52 NE2 REMARK 620 2 HIS A 124 NE2 87.8 REMARK 620 3 GLU A 190 OE1 132.9 93.7 REMARK 620 4 GLU A 190 OE2 78.7 90.7 54.2 REMARK 620 5 ASP A 265 OD2 126.8 134.4 83.2 121.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 52 NE2 REMARK 620 2 HIS B 124 NE2 87.3 REMARK 620 3 GLU B 190 OE1 128.1 98.9 REMARK 620 4 GLU B 190 OE2 74.0 87.2 55.1 REMARK 620 5 ASP B 265 OD2 123.9 134.6 86.9 129.8 REMARK 620 N 1 2 3 4 DBREF 8YJ8 A 15 294 UNP P0A4G4 MTSA_STRP1 31 310 DBREF 8YJ8 B 15 294 UNP P0A4G4 MTSA_STRP1 31 310 DBREF 8YJ8 C 1 134 PDB 8YJ8 8YJ8 1 134 DBREF 8YJ8 D 1 134 PDB 8YJ8 8YJ8 1 134 SEQRES 1 A 280 SER ASP LYS LEU LYS VAL VAL ALA THR ASN SER ILE ILE SEQRES 2 A 280 ALA ASP MET THR LYS ALA ILE ALA GLY ASP LYS ILE ASP SEQRES 3 A 280 LEU HIS SER ILE VAL PRO ILE GLY GLN ASP PRO HIS GLU SEQRES 4 A 280 TYR GLU PRO LEU PRO GLU ASP VAL GLU LYS THR SER ASN SEQRES 5 A 280 ALA ASP VAL ILE PHE TYR ASN GLY ILE ASN LEU GLU ASP SEQRES 6 A 280 GLY GLY GLN ALA TRP PHE THR LYS LEU VAL LYS ASN ALA SEQRES 7 A 280 GLN LYS THR LYS ASN LYS ASP TYR PHE ALA VAL SER ASP SEQRES 8 A 280 GLY ILE ASP VAL ILE TYR LEU GLU GLY ALA SER GLU LYS SEQRES 9 A 280 GLY LYS GLU ASP PRO HIS ALA TRP LEU ASN LEU GLU ASN SEQRES 10 A 280 GLY ILE ILE TYR SER LYS ASN ILE ALA LYS GLN LEU ILE SEQRES 11 A 280 ALA LYS ASP PRO LYS ASN LYS GLU THR TYR GLU LYS ASN SEQRES 12 A 280 LEU LYS ALA TYR VAL ALA LYS LEU GLU LYS LEU ASP LYS SEQRES 13 A 280 GLU ALA LYS SER LYS PHE ASP ALA ILE ALA GLU ASN LYS SEQRES 14 A 280 LYS LEU ILE VAL THR SER GLU GLY CYS PHE LYS TYR PHE SEQRES 15 A 280 SER LYS ALA TYR GLY VAL PRO SER ALA TYR ILE TRP GLU SEQRES 16 A 280 ILE ASN THR GLU GLU GLU GLY THR PRO ASP GLN ILE SER SEQRES 17 A 280 SER LEU ILE GLU LYS LEU LYS VAL ILE LYS PRO SER ALA SEQRES 18 A 280 LEU PHE VAL GLU SER SER VAL ASP ARG ARG PRO MET GLU SEQRES 19 A 280 THR VAL SER LYS ASP SER GLY ILE PRO ILE TYR SER GLU SEQRES 20 A 280 ILE PHE THR ASP SER ILE ALA LYS LYS GLY LYS PRO GLY SEQRES 21 A 280 ASP SER TYR TYR ALA MET MET LYS TRP ASN LEU ASP LYS SEQRES 22 A 280 ILE SER GLU GLY LEU ALA LYS SEQRES 1 B 280 SER ASP LYS LEU LYS VAL VAL ALA THR ASN SER ILE ILE SEQRES 2 B 280 ALA ASP MET THR LYS ALA ILE ALA GLY ASP LYS ILE ASP SEQRES 3 B 280 LEU HIS SER ILE VAL PRO ILE GLY GLN ASP PRO HIS GLU SEQRES 4 B 280 TYR GLU PRO LEU PRO GLU ASP VAL GLU LYS THR SER ASN SEQRES 5 B 280 ALA ASP VAL ILE PHE TYR ASN GLY ILE ASN LEU GLU ASP SEQRES 6 B 280 GLY GLY GLN ALA TRP PHE THR LYS LEU VAL LYS ASN ALA SEQRES 7 B 280 GLN LYS THR LYS ASN LYS ASP TYR PHE ALA VAL SER ASP SEQRES 8 B 280 GLY ILE ASP VAL ILE TYR LEU GLU GLY ALA SER GLU LYS SEQRES 9 B 280 GLY LYS GLU ASP PRO HIS ALA TRP LEU ASN LEU GLU ASN SEQRES 10 B 280 GLY ILE ILE TYR SER LYS ASN ILE ALA LYS GLN LEU ILE SEQRES 11 B 280 ALA LYS ASP PRO LYS ASN LYS GLU THR TYR GLU LYS ASN SEQRES 12 B 280 LEU LYS ALA TYR VAL ALA LYS LEU GLU LYS LEU ASP LYS SEQRES 13 B 280 GLU ALA LYS SER LYS PHE ASP ALA ILE ALA GLU ASN LYS SEQRES 14 B 280 LYS LEU ILE VAL THR SER GLU GLY CYS PHE LYS TYR PHE SEQRES 15 B 280 SER LYS ALA TYR GLY VAL PRO SER ALA TYR ILE TRP GLU SEQRES 16 B 280 ILE ASN THR GLU GLU GLU GLY THR PRO ASP GLN ILE SER SEQRES 17 B 280 SER LEU ILE GLU LYS LEU LYS VAL ILE LYS PRO SER ALA SEQRES 18 B 280 LEU PHE VAL GLU SER SER VAL ASP ARG ARG PRO MET GLU SEQRES 19 B 280 THR VAL SER LYS ASP SER GLY ILE PRO ILE TYR SER GLU SEQRES 20 B 280 ILE PHE THR ASP SER ILE ALA LYS LYS GLY LYS PRO GLY SEQRES 21 B 280 ASP SER TYR TYR ALA MET MET LYS TRP ASN LEU ASP LYS SEQRES 22 B 280 ILE SER GLU GLY LEU ALA LYS SEQRES 1 C 134 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 134 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 134 PHE THR LEU ASP ASN TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 C 134 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE GLY SEQRES 5 C 134 LEU SER ALA VAL THR THR TYR ASP THR ASP SER VAL LYS SEQRES 6 C 134 GLY ARG PHE THR ILE SER ARG ASP SER ALA ARG ASN THR SEQRES 7 C 134 VAL TYR LEU GLN MET ASN SER LEU ARG PRO GLU ASP THR SEQRES 8 C 134 ALA VAL TYR PHE CYS ALA ALA PHE PRO TYR SER ASP TYR SEQRES 9 C 134 CYS PRO ASP SER ASP ASP PHE LEU GLN HIS ARG GLY HIS SEQRES 10 C 134 GLY THR GLN VAL THR VAL SER SER ALA ALA GLY HIS HIS SEQRES 11 C 134 HIS HIS HIS HIS SEQRES 1 D 134 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 134 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 134 PHE THR LEU ASP ASN TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 D 134 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE GLY SEQRES 5 D 134 LEU SER ALA VAL THR THR TYR ASP THR ASP SER VAL LYS SEQRES 6 D 134 GLY ARG PHE THR ILE SER ARG ASP SER ALA ARG ASN THR SEQRES 7 D 134 VAL TYR LEU GLN MET ASN SER LEU ARG PRO GLU ASP THR SEQRES 8 D 134 ALA VAL TYR PHE CYS ALA ALA PHE PRO TYR SER ASP TYR SEQRES 9 D 134 CYS PRO ASP SER ASP ASP PHE LEU GLN HIS ARG GLY HIS SEQRES 10 D 134 GLY THR GLN VAL THR VAL SER SER ALA ALA GLY HIS HIS SEQRES 11 D 134 HIS HIS HIS HIS HET ZN A 301 1 HET ZN B 301 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *695(H2 O) HELIX 1 AA1 ASN A 24 GLY A 36 1 13 HELIX 2 AA2 LEU A 57 ALA A 67 1 11 HELIX 3 AA3 ALA A 83 ALA A 92 1 10 HELIX 4 AA4 GLY A 114 LYS A 118 5 5 HELIX 5 AA5 HIS A 124 LEU A 127 5 4 HELIX 6 AA6 ASN A 128 ASP A 147 1 20 HELIX 7 AA7 ASN A 150 LYS A 175 1 26 HELIX 8 AA8 PHE A 193 GLY A 201 1 9 HELIX 9 AA9 THR A 217 ILE A 231 1 15 HELIX 10 AB1 ARG A 244 GLY A 255 1 12 HELIX 11 AB2 SER A 276 LYS A 294 1 19 HELIX 12 AB3 ASN B 24 GLY B 36 1 13 HELIX 13 AB4 LEU B 57 ALA B 67 1 11 HELIX 14 AB5 ALA B 83 ALA B 92 1 10 HELIX 15 AB6 GLY B 114 LYS B 118 5 5 HELIX 16 AB7 HIS B 124 LEU B 127 5 4 HELIX 17 AB8 ASN B 128 ASP B 147 1 20 HELIX 18 AB9 ASN B 150 LYS B 175 1 26 HELIX 19 AC1 ALA B 180 LYS B 184 5 5 HELIX 20 AC2 PHE B 193 GLY B 201 1 9 HELIX 21 AC3 THR B 217 ILE B 231 1 15 HELIX 22 AC4 ARG B 244 GLY B 255 1 12 HELIX 23 AC5 SER B 276 ALA B 293 1 18 HELIX 24 AC6 THR C 28 ASP C 30 5 3 HELIX 25 AC7 THR C 61 LYS C 65 5 5 HELIX 26 AC8 ARG C 87 THR C 91 5 5 HELIX 27 AC9 THR D 61 LYS D 65 5 5 HELIX 28 AD1 SER D 74 ARG D 76 5 3 HELIX 29 AD2 ARG D 87 THR D 91 5 5 SHEET 1 AA1 4 ILE A 39 SER A 43 0 SHEET 2 AA1 4 LEU A 18 ALA A 22 1 N VAL A 20 O ASP A 40 SHEET 3 AA1 4 VAL A 69 TYR A 72 1 O PHE A 71 N VAL A 21 SHEET 4 AA1 4 TYR A 100 ALA A 102 1 O PHE A 101 N ILE A 70 SHEET 1 AA2 2 ILE A 186 GLU A 190 0 SHEET 2 AA2 2 SER A 204 TRP A 208 1 O ALA A 205 N ILE A 186 SHEET 1 AA3 2 LEU A 236 GLU A 239 0 SHEET 2 AA3 2 ILE A 258 ILE A 262 1 O TYR A 259 N LEU A 236 SHEET 1 AA4 4 ASP B 40 SER B 43 0 SHEET 2 AA4 4 LYS B 19 ALA B 22 1 N VAL B 20 O ASP B 40 SHEET 3 AA4 4 VAL B 69 TYR B 72 1 O PHE B 71 N VAL B 21 SHEET 4 AA4 4 TYR B 100 ALA B 102 1 O PHE B 101 N ILE B 70 SHEET 1 AA5 2 ILE B 110 TYR B 111 0 SHEET 2 AA5 2 GLU B 121 ASP B 122 -1 O ASP B 122 N ILE B 110 SHEET 1 AA6 2 ILE B 186 GLU B 190 0 SHEET 2 AA6 2 SER B 204 TRP B 208 1 O ALA B 205 N ILE B 186 SHEET 1 AA7 2 LEU B 236 GLU B 239 0 SHEET 2 AA7 2 ILE B 258 ILE B 262 1 O TYR B 259 N LEU B 236 SHEET 1 AA8 4 LEU C 4 SER C 7 0 SHEET 2 AA8 4 LEU C 18 ALA C 24 -1 O ALA C 23 N VAL C 5 SHEET 3 AA8 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 AA8 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AA9 6 GLY C 10 VAL C 12 0 SHEET 2 AA9 6 THR C 119 VAL C 123 1 O THR C 122 N VAL C 12 SHEET 3 AA9 6 ALA C 92 PRO C 100 -1 N TYR C 94 O THR C 119 SHEET 4 AA9 6 TYR C 32 GLN C 39 -1 N PHE C 37 O PHE C 95 SHEET 5 AA9 6 GLU C 46 ILE C 51 -1 O SER C 49 N TRP C 36 SHEET 6 AA9 6 THR C 57 THR C 58 -1 O THR C 58 N CYS C 50 SHEET 1 AB1 4 GLY C 10 VAL C 12 0 SHEET 2 AB1 4 THR C 119 VAL C 123 1 O THR C 122 N VAL C 12 SHEET 3 AB1 4 ALA C 92 PRO C 100 -1 N TYR C 94 O THR C 119 SHEET 4 AB1 4 HIS C 114 ARG C 115 -1 O HIS C 114 N ALA C 98 SHEET 1 AB2 4 LEU D 4 SER D 7 0 SHEET 2 AB2 4 LEU D 18 ALA D 24 -1 O ALA D 23 N VAL D 5 SHEET 3 AB2 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AB2 4 PHE D 68 ASP D 73 -1 N ASP D 73 O THR D 78 SHEET 1 AB3 6 GLY D 10 VAL D 12 0 SHEET 2 AB3 6 THR D 119 VAL D 123 1 O THR D 122 N VAL D 12 SHEET 3 AB3 6 ALA D 92 PRO D 100 -1 N TYR D 94 O THR D 119 SHEET 4 AB3 6 TYR D 32 GLN D 39 -1 N PHE D 37 O PHE D 95 SHEET 5 AB3 6 GLU D 46 ILE D 51 -1 O SER D 49 N TRP D 36 SHEET 6 AB3 6 THR D 57 THR D 58 -1 O THR D 58 N CYS D 50 SSBOND 1 CYS C 22 CYS C 96 1555 1555 2.04 SSBOND 2 CYS C 50 CYS C 105 1555 1555 2.05 SSBOND 3 CYS D 22 CYS D 96 1555 1555 2.08 SSBOND 4 CYS D 50 CYS D 105 1555 1555 2.06 LINK NE2 HIS A 52 ZN ZN A 301 1555 1555 2.38 LINK NE2 HIS A 124 ZN ZN A 301 1555 1555 2.25 LINK OE1 GLU A 190 ZN ZN A 301 1555 1555 2.26 LINK OE2 GLU A 190 ZN ZN A 301 1555 1555 2.57 LINK OD2 ASP A 265 ZN ZN A 301 1555 1555 2.17 LINK NE2 HIS B 52 ZN ZN B 301 1555 1555 2.45 LINK NE2 HIS B 124 ZN ZN B 301 1555 1555 2.21 LINK OE1 GLU B 190 ZN ZN B 301 1555 1555 2.24 LINK OE2 GLU B 190 ZN ZN B 301 1555 1555 2.51 LINK OD2 ASP B 265 ZN ZN B 301 1555 1555 2.12 CRYST1 292.931 58.083 50.760 90.00 91.24 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003414 0.000000 0.000074 0.00000 SCALE2 0.000000 0.017217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019705 0.00000