data_8YKK # _entry.id 8YKK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8YKK pdb_00008ykk 10.2210/pdb8ykk/pdb WWPDB D_1300043862 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8YKK _pdbx_database_status.recvd_initial_deposition_date 2024-03-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email rmsl_2040@163.com _pdbx_contact_author.name_first Jian _pdbx_contact_author.name_last Li _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9511-4219 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhou, X.L.' 1 ? 'Lin, C.' 2 ? 'Zhang, J.' 3 ? 'Li, J.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Int.J.Biol.Macromol. _citation.journal_id_ASTM IJBMDR _citation.journal_id_CSD 0708 _citation.journal_id_ISSN 0141-8130 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 276 _citation.language ? _citation.page_first 133706 _citation.page_last 133706 _citation.title 'Crystal structures of coronaviral main proteases in complex with the non-covalent inhibitor X77.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.ijbiomac.2024.133706 _citation.pdbx_database_id_PubMed 38981557 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, H.' 1 ? primary 'Li, W.' 2 ? primary 'Zhou, X.' 3 ? primary 'Zhang, J.' 4 ? primary 'Li, J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '3C-like proteinase nsp5' 33066.754 1 3.4.22.69 ? ? ? 2 non-polymer syn 'N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide' 459.583 1 ? ? ? ? 3 water nat water 18.015 20 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Main protease,Mpro,Non-structural protein 5,nsp5,SARS coronavirus main proteinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHS MQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCY MHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHS MQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCY MHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide' X77 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PHE n 1 3 ARG n 1 4 LYS n 1 5 MET n 1 6 ALA n 1 7 PHE n 1 8 PRO n 1 9 SER n 1 10 GLY n 1 11 LYS n 1 12 VAL n 1 13 GLU n 1 14 GLY n 1 15 CYS n 1 16 MET n 1 17 VAL n 1 18 GLN n 1 19 VAL n 1 20 THR n 1 21 CYS n 1 22 GLY n 1 23 THR n 1 24 THR n 1 25 THR n 1 26 LEU n 1 27 ASN n 1 28 GLY n 1 29 LEU n 1 30 TRP n 1 31 LEU n 1 32 ASP n 1 33 ASP n 1 34 THR n 1 35 VAL n 1 36 TYR n 1 37 CYS n 1 38 PRO n 1 39 ARG n 1 40 HIS n 1 41 VAL n 1 42 ILE n 1 43 CYS n 1 44 THR n 1 45 ALA n 1 46 GLU n 1 47 ASP n 1 48 MET n 1 49 LEU n 1 50 ASN n 1 51 PRO n 1 52 ASN n 1 53 TYR n 1 54 GLU n 1 55 ASP n 1 56 LEU n 1 57 LEU n 1 58 ILE n 1 59 ARG n 1 60 LYS n 1 61 SER n 1 62 ASN n 1 63 HIS n 1 64 SER n 1 65 PHE n 1 66 LEU n 1 67 VAL n 1 68 GLN n 1 69 ALA n 1 70 GLY n 1 71 ASN n 1 72 VAL n 1 73 GLN n 1 74 LEU n 1 75 ARG n 1 76 VAL n 1 77 ILE n 1 78 GLY n 1 79 HIS n 1 80 SER n 1 81 MET n 1 82 GLN n 1 83 ASN n 1 84 CYS n 1 85 LEU n 1 86 LEU n 1 87 ARG n 1 88 LEU n 1 89 LYS n 1 90 VAL n 1 91 ASP n 1 92 THR n 1 93 SER n 1 94 ASN n 1 95 PRO n 1 96 LYS n 1 97 THR n 1 98 PRO n 1 99 LYS n 1 100 TYR n 1 101 LYS n 1 102 PHE n 1 103 VAL n 1 104 ARG n 1 105 ILE n 1 106 GLN n 1 107 PRO n 1 108 GLY n 1 109 GLN n 1 110 THR n 1 111 PHE n 1 112 SER n 1 113 VAL n 1 114 LEU n 1 115 ALA n 1 116 CYS n 1 117 TYR n 1 118 ASN n 1 119 GLY n 1 120 SER n 1 121 PRO n 1 122 SER n 1 123 GLY n 1 124 VAL n 1 125 TYR n 1 126 GLN n 1 127 CYS n 1 128 ALA n 1 129 MET n 1 130 ARG n 1 131 PRO n 1 132 ASN n 1 133 HIS n 1 134 THR n 1 135 ILE n 1 136 LYS n 1 137 GLY n 1 138 SER n 1 139 PHE n 1 140 LEU n 1 141 ASN n 1 142 GLY n 1 143 SER n 1 144 CYS n 1 145 GLY n 1 146 SER n 1 147 VAL n 1 148 GLY n 1 149 PHE n 1 150 ASN n 1 151 ILE n 1 152 ASP n 1 153 TYR n 1 154 ASP n 1 155 CYS n 1 156 VAL n 1 157 SER n 1 158 PHE n 1 159 CYS n 1 160 TYR n 1 161 MET n 1 162 HIS n 1 163 HIS n 1 164 MET n 1 165 GLU n 1 166 LEU n 1 167 PRO n 1 168 THR n 1 169 GLY n 1 170 VAL n 1 171 HIS n 1 172 ALA n 1 173 GLY n 1 174 THR n 1 175 ASP n 1 176 LEU n 1 177 GLU n 1 178 GLY n 1 179 LYS n 1 180 PHE n 1 181 TYR n 1 182 GLY n 1 183 PRO n 1 184 PHE n 1 185 VAL n 1 186 ASP n 1 187 ARG n 1 188 GLN n 1 189 THR n 1 190 ALA n 1 191 GLN n 1 192 ALA n 1 193 ALA n 1 194 GLY n 1 195 THR n 1 196 ASP n 1 197 THR n 1 198 THR n 1 199 ILE n 1 200 THR n 1 201 LEU n 1 202 ASN n 1 203 VAL n 1 204 LEU n 1 205 ALA n 1 206 TRP n 1 207 LEU n 1 208 TYR n 1 209 ALA n 1 210 ALA n 1 211 VAL n 1 212 ILE n 1 213 ASN n 1 214 GLY n 1 215 ASP n 1 216 ARG n 1 217 TRP n 1 218 PHE n 1 219 LEU n 1 220 ASN n 1 221 ARG n 1 222 PHE n 1 223 THR n 1 224 THR n 1 225 THR n 1 226 LEU n 1 227 ASN n 1 228 ASP n 1 229 PHE n 1 230 ASN n 1 231 LEU n 1 232 VAL n 1 233 ALA n 1 234 MET n 1 235 LYS n 1 236 TYR n 1 237 ASN n 1 238 TYR n 1 239 GLU n 1 240 PRO n 1 241 LEU n 1 242 THR n 1 243 GLN n 1 244 ASP n 1 245 HIS n 1 246 VAL n 1 247 ASP n 1 248 ILE n 1 249 LEU n 1 250 GLY n 1 251 PRO n 1 252 LEU n 1 253 SER n 1 254 ALA n 1 255 GLN n 1 256 THR n 1 257 GLY n 1 258 ILE n 1 259 ALA n 1 260 VAL n 1 261 LEU n 1 262 ASP n 1 263 MET n 1 264 CYS n 1 265 ALA n 1 266 ALA n 1 267 LEU n 1 268 LYS n 1 269 GLU n 1 270 LEU n 1 271 LEU n 1 272 GLN n 1 273 ASN n 1 274 GLY n 1 275 MET n 1 276 ASN n 1 277 GLY n 1 278 ARG n 1 279 THR n 1 280 ILE n 1 281 LEU n 1 282 GLY n 1 283 SER n 1 284 THR n 1 285 ILE n 1 286 LEU n 1 287 GLU n 1 288 ASP n 1 289 GLU n 1 290 PHE n 1 291 THR n 1 292 PRO n 1 293 PHE n 1 294 ASP n 1 295 VAL n 1 296 VAL n 1 297 ARG n 1 298 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 298 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome-related coronavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 694009 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 X77 non-polymer . 'N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide' ? 'C27 H33 N5 O2' 459.583 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2 2 GLY GLY A . n A 1 2 PHE 2 3 3 PHE PHE A . n A 1 3 ARG 3 4 4 ARG ARG A . n A 1 4 LYS 4 5 5 LYS LYS A . n A 1 5 MET 5 6 6 MET MET A . n A 1 6 ALA 6 7 7 ALA ALA A . n A 1 7 PHE 7 8 8 PHE PHE A . n A 1 8 PRO 8 9 9 PRO PRO A . n A 1 9 SER 9 10 10 SER SER A . n A 1 10 GLY 10 11 11 GLY GLY A . n A 1 11 LYS 11 12 12 LYS LYS A . n A 1 12 VAL 12 13 13 VAL VAL A . n A 1 13 GLU 13 14 14 GLU GLU A . n A 1 14 GLY 14 15 15 GLY GLY A . n A 1 15 CYS 15 16 16 CYS CYS A . n A 1 16 MET 16 17 17 MET MET A . n A 1 17 VAL 17 18 18 VAL VAL A . n A 1 18 GLN 18 19 19 GLN GLN A . n A 1 19 VAL 19 20 20 VAL VAL A . n A 1 20 THR 20 21 21 THR THR A . n A 1 21 CYS 21 22 22 CYS CYS A . n A 1 22 GLY 22 23 23 GLY GLY A . n A 1 23 THR 23 24 24 THR THR A . n A 1 24 THR 24 25 25 THR THR A . n A 1 25 THR 25 26 26 THR THR A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 ASN 27 28 28 ASN ASN A . n A 1 28 GLY 28 29 29 GLY GLY A . n A 1 29 LEU 29 30 30 LEU LEU A . n A 1 30 TRP 30 31 31 TRP TRP A . n A 1 31 LEU 31 32 32 LEU LEU A . n A 1 32 ASP 32 33 33 ASP ASP A . n A 1 33 ASP 33 34 34 ASP ASP A . n A 1 34 THR 34 35 35 THR THR A . n A 1 35 VAL 35 36 36 VAL VAL A . n A 1 36 TYR 36 37 37 TYR TYR A . n A 1 37 CYS 37 38 38 CYS CYS A . n A 1 38 PRO 38 39 39 PRO PRO A . n A 1 39 ARG 39 40 40 ARG ARG A . n A 1 40 HIS 40 41 41 HIS HIS A . n A 1 41 VAL 41 42 42 VAL VAL A . n A 1 42 ILE 42 43 43 ILE ILE A . n A 1 43 CYS 43 44 44 CYS CYS A . n A 1 44 THR 44 45 45 THR THR A . n A 1 45 ALA 45 46 46 ALA ALA A . n A 1 46 GLU 46 47 47 GLU GLU A . n A 1 47 ASP 47 48 48 ASP ASP A . n A 1 48 MET 48 49 49 MET MET A . n A 1 49 LEU 49 50 50 LEU LEU A . n A 1 50 ASN 50 51 51 ASN ASN A . n A 1 51 PRO 51 52 52 PRO PRO A . n A 1 52 ASN 52 53 53 ASN ASN A . n A 1 53 TYR 53 54 54 TYR TYR A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 ASP 55 56 56 ASP ASP A . n A 1 56 LEU 56 57 57 LEU LEU A . n A 1 57 LEU 57 58 58 LEU LEU A . n A 1 58 ILE 58 59 59 ILE ILE A . n A 1 59 ARG 59 60 60 ARG ARG A . n A 1 60 LYS 60 61 61 LYS LYS A . n A 1 61 SER 61 62 62 SER SER A . n A 1 62 ASN 62 63 63 ASN ASN A . n A 1 63 HIS 63 64 64 HIS HIS A . n A 1 64 SER 64 65 65 SER SER A . n A 1 65 PHE 65 66 66 PHE PHE A . n A 1 66 LEU 66 67 67 LEU LEU A . n A 1 67 VAL 67 68 68 VAL VAL A . n A 1 68 GLN 68 69 69 GLN GLN A . n A 1 69 ALA 69 70 70 ALA ALA A . n A 1 70 GLY 70 71 71 GLY GLY A . n A 1 71 ASN 71 72 72 ASN ASN A . n A 1 72 VAL 72 73 73 VAL VAL A . n A 1 73 GLN 73 74 74 GLN GLN A . n A 1 74 LEU 74 75 75 LEU LEU A . n A 1 75 ARG 75 76 76 ARG ARG A . n A 1 76 VAL 76 77 77 VAL VAL A . n A 1 77 ILE 77 78 78 ILE ILE A . n A 1 78 GLY 78 79 79 GLY GLY A . n A 1 79 HIS 79 80 80 HIS HIS A . n A 1 80 SER 80 81 81 SER SER A . n A 1 81 MET 81 82 82 MET MET A . n A 1 82 GLN 82 83 83 GLN GLN A . n A 1 83 ASN 83 84 84 ASN ASN A . n A 1 84 CYS 84 85 85 CYS CYS A . n A 1 85 LEU 85 86 86 LEU LEU A . n A 1 86 LEU 86 87 87 LEU LEU A . n A 1 87 ARG 87 88 88 ARG ARG A . n A 1 88 LEU 88 89 89 LEU LEU A . n A 1 89 LYS 89 90 90 LYS LYS A . n A 1 90 VAL 90 91 91 VAL VAL A . n A 1 91 ASP 91 92 92 ASP ASP A . n A 1 92 THR 92 93 93 THR THR A . n A 1 93 SER 93 94 94 SER SER A . n A 1 94 ASN 94 95 95 ASN ASN A . n A 1 95 PRO 95 96 96 PRO PRO A . n A 1 96 LYS 96 97 97 LYS LYS A . n A 1 97 THR 97 98 98 THR THR A . n A 1 98 PRO 98 99 99 PRO PRO A . n A 1 99 LYS 99 100 100 LYS LYS A . n A 1 100 TYR 100 101 101 TYR TYR A . n A 1 101 LYS 101 102 102 LYS LYS A . n A 1 102 PHE 102 103 103 PHE PHE A . n A 1 103 VAL 103 104 104 VAL VAL A . n A 1 104 ARG 104 105 105 ARG ARG A . n A 1 105 ILE 105 106 106 ILE ILE A . n A 1 106 GLN 106 107 107 GLN GLN A . n A 1 107 PRO 107 108 108 PRO PRO A . n A 1 108 GLY 108 109 109 GLY GLY A . n A 1 109 GLN 109 110 110 GLN GLN A . n A 1 110 THR 110 111 111 THR THR A . n A 1 111 PHE 111 112 112 PHE PHE A . n A 1 112 SER 112 113 113 SER SER A . n A 1 113 VAL 113 114 114 VAL VAL A . n A 1 114 LEU 114 115 115 LEU LEU A . n A 1 115 ALA 115 116 116 ALA ALA A . n A 1 116 CYS 116 117 117 CYS CYS A . n A 1 117 TYR 117 118 118 TYR TYR A . n A 1 118 ASN 118 119 119 ASN ASN A . n A 1 119 GLY 119 120 120 GLY GLY A . n A 1 120 SER 120 121 121 SER SER A . n A 1 121 PRO 121 122 122 PRO PRO A . n A 1 122 SER 122 123 123 SER SER A . n A 1 123 GLY 123 124 124 GLY GLY A . n A 1 124 VAL 124 125 125 VAL VAL A . n A 1 125 TYR 125 126 126 TYR TYR A . n A 1 126 GLN 126 127 127 GLN GLN A . n A 1 127 CYS 127 128 128 CYS CYS A . n A 1 128 ALA 128 129 129 ALA ALA A . n A 1 129 MET 129 130 130 MET MET A . n A 1 130 ARG 130 131 131 ARG ARG A . n A 1 131 PRO 131 132 132 PRO PRO A . n A 1 132 ASN 132 133 133 ASN ASN A . n A 1 133 HIS 133 134 134 HIS HIS A . n A 1 134 THR 134 135 135 THR THR A . n A 1 135 ILE 135 136 136 ILE ILE A . n A 1 136 LYS 136 137 137 LYS LYS A . n A 1 137 GLY 137 138 138 GLY GLY A . n A 1 138 SER 138 139 139 SER SER A . n A 1 139 PHE 139 140 140 PHE PHE A . n A 1 140 LEU 140 141 141 LEU LEU A . n A 1 141 ASN 141 142 142 ASN ASN A . n A 1 142 GLY 142 143 143 GLY GLY A . n A 1 143 SER 143 144 144 SER SER A . n A 1 144 CYS 144 145 145 CYS CYS A . n A 1 145 GLY 145 146 146 GLY GLY A . n A 1 146 SER 146 147 147 SER SER A . n A 1 147 VAL 147 148 148 VAL VAL A . n A 1 148 GLY 148 149 149 GLY GLY A . n A 1 149 PHE 149 150 150 PHE PHE A . n A 1 150 ASN 150 151 151 ASN ASN A . n A 1 151 ILE 151 152 152 ILE ILE A . n A 1 152 ASP 152 153 153 ASP ASP A . n A 1 153 TYR 153 154 154 TYR TYR A . n A 1 154 ASP 154 155 155 ASP ASP A . n A 1 155 CYS 155 156 156 CYS CYS A . n A 1 156 VAL 156 157 157 VAL VAL A . n A 1 157 SER 157 158 158 SER SER A . n A 1 158 PHE 158 159 159 PHE PHE A . n A 1 159 CYS 159 160 160 CYS CYS A . n A 1 160 TYR 160 161 161 TYR TYR A . n A 1 161 MET 161 162 162 MET MET A . n A 1 162 HIS 162 163 163 HIS HIS A . n A 1 163 HIS 163 164 164 HIS HIS A . n A 1 164 MET 164 165 165 MET MET A . n A 1 165 GLU 165 166 166 GLU GLU A . n A 1 166 LEU 166 167 167 LEU LEU A . n A 1 167 PRO 167 168 168 PRO PRO A . n A 1 168 THR 168 169 169 THR THR A . n A 1 169 GLY 169 170 170 GLY GLY A . n A 1 170 VAL 170 171 171 VAL VAL A . n A 1 171 HIS 171 172 172 HIS HIS A . n A 1 172 ALA 172 173 173 ALA ALA A . n A 1 173 GLY 173 174 174 GLY GLY A . n A 1 174 THR 174 175 175 THR THR A . n A 1 175 ASP 175 176 176 ASP ASP A . n A 1 176 LEU 176 177 177 LEU LEU A . n A 1 177 GLU 177 178 178 GLU GLU A . n A 1 178 GLY 178 179 179 GLY GLY A . n A 1 179 LYS 179 180 180 LYS LYS A . n A 1 180 PHE 180 181 181 PHE PHE A . n A 1 181 TYR 181 182 182 TYR TYR A . n A 1 182 GLY 182 183 183 GLY GLY A . n A 1 183 PRO 183 184 184 PRO PRO A . n A 1 184 PHE 184 185 185 PHE PHE A . n A 1 185 VAL 185 186 186 VAL VAL A . n A 1 186 ASP 186 187 187 ASP ASP A . n A 1 187 ARG 187 188 188 ARG ARG A . n A 1 188 GLN 188 189 189 GLN GLN A . n A 1 189 THR 189 190 190 THR THR A . n A 1 190 ALA 190 191 191 ALA ALA A . n A 1 191 GLN 191 192 192 GLN GLN A . n A 1 192 ALA 192 193 193 ALA ALA A . n A 1 193 ALA 193 194 194 ALA ALA A . n A 1 194 GLY 194 195 195 GLY GLY A . n A 1 195 THR 195 196 196 THR THR A . n A 1 196 ASP 196 197 197 ASP ASP A . n A 1 197 THR 197 198 198 THR THR A . n A 1 198 THR 198 199 199 THR THR A . n A 1 199 ILE 199 200 200 ILE ILE A . n A 1 200 THR 200 201 201 THR THR A . n A 1 201 LEU 201 202 202 LEU LEU A . n A 1 202 ASN 202 203 203 ASN ASN A . n A 1 203 VAL 203 204 204 VAL VAL A . n A 1 204 LEU 204 205 205 LEU LEU A . n A 1 205 ALA 205 206 206 ALA ALA A . n A 1 206 TRP 206 207 207 TRP TRP A . n A 1 207 LEU 207 208 208 LEU LEU A . n A 1 208 TYR 208 209 209 TYR TYR A . n A 1 209 ALA 209 210 210 ALA ALA A . n A 1 210 ALA 210 211 211 ALA ALA A . n A 1 211 VAL 211 212 212 VAL VAL A . n A 1 212 ILE 212 213 213 ILE ILE A . n A 1 213 ASN 213 214 214 ASN ASN A . n A 1 214 GLY 214 215 215 GLY GLY A . n A 1 215 ASP 215 216 216 ASP ASP A . n A 1 216 ARG 216 217 217 ARG ARG A . n A 1 217 TRP 217 218 218 TRP TRP A . n A 1 218 PHE 218 219 219 PHE PHE A . n A 1 219 LEU 219 220 220 LEU LEU A . n A 1 220 ASN 220 221 221 ASN ASN A . n A 1 221 ARG 221 222 222 ARG ARG A . n A 1 222 PHE 222 223 223 PHE PHE A . n A 1 223 THR 223 224 224 THR THR A . n A 1 224 THR 224 225 225 THR THR A . n A 1 225 THR 225 226 226 THR THR A . n A 1 226 LEU 226 227 227 LEU LEU A . n A 1 227 ASN 227 228 228 ASN ASN A . n A 1 228 ASP 228 229 229 ASP ASP A . n A 1 229 PHE 229 230 230 PHE PHE A . n A 1 230 ASN 230 231 231 ASN ASN A . n A 1 231 LEU 231 232 232 LEU LEU A . n A 1 232 VAL 232 233 233 VAL VAL A . n A 1 233 ALA 233 234 234 ALA ALA A . n A 1 234 MET 234 235 235 MET MET A . n A 1 235 LYS 235 236 236 LYS LYS A . n A 1 236 TYR 236 237 237 TYR TYR A . n A 1 237 ASN 237 238 238 ASN ASN A . n A 1 238 TYR 238 239 239 TYR TYR A . n A 1 239 GLU 239 240 240 GLU GLU A . n A 1 240 PRO 240 241 241 PRO PRO A . n A 1 241 LEU 241 242 242 LEU LEU A . n A 1 242 THR 242 243 243 THR THR A . n A 1 243 GLN 243 244 244 GLN GLN A . n A 1 244 ASP 244 245 245 ASP ASP A . n A 1 245 HIS 245 246 246 HIS HIS A . n A 1 246 VAL 246 247 247 VAL VAL A . n A 1 247 ASP 247 248 248 ASP ASP A . n A 1 248 ILE 248 249 249 ILE ILE A . n A 1 249 LEU 249 250 250 LEU LEU A . n A 1 250 GLY 250 251 251 GLY GLY A . n A 1 251 PRO 251 252 252 PRO PRO A . n A 1 252 LEU 252 253 253 LEU LEU A . n A 1 253 SER 253 254 254 SER SER A . n A 1 254 ALA 254 255 255 ALA ALA A . n A 1 255 GLN 255 256 256 GLN GLN A . n A 1 256 THR 256 257 257 THR THR A . n A 1 257 GLY 257 258 258 GLY GLY A . n A 1 258 ILE 258 259 259 ILE ILE A . n A 1 259 ALA 259 260 260 ALA ALA A . n A 1 260 VAL 260 261 261 VAL VAL A . n A 1 261 LEU 261 262 262 LEU LEU A . n A 1 262 ASP 262 263 263 ASP ASP A . n A 1 263 MET 263 264 264 MET MET A . n A 1 264 CYS 264 265 265 CYS CYS A . n A 1 265 ALA 265 266 266 ALA ALA A . n A 1 266 ALA 266 267 267 ALA ALA A . n A 1 267 LEU 267 268 268 LEU LEU A . n A 1 268 LYS 268 269 269 LYS LYS A . n A 1 269 GLU 269 270 270 GLU GLU A . n A 1 270 LEU 270 271 271 LEU LEU A . n A 1 271 LEU 271 272 272 LEU LEU A . n A 1 272 GLN 272 273 273 GLN GLN A . n A 1 273 ASN 273 274 274 ASN ASN A . n A 1 274 GLY 274 275 275 GLY GLY A . n A 1 275 MET 275 276 276 MET MET A . n A 1 276 ASN 276 277 277 ASN ASN A . n A 1 277 GLY 277 278 278 GLY GLY A . n A 1 278 ARG 278 279 279 ARG ARG A . n A 1 279 THR 279 280 280 THR THR A . n A 1 280 ILE 280 281 281 ILE ILE A . n A 1 281 LEU 281 282 282 LEU LEU A . n A 1 282 GLY 282 283 283 GLY GLY A . n A 1 283 SER 283 284 284 SER SER A . n A 1 284 THR 284 285 285 THR THR A . n A 1 285 ILE 285 286 286 ILE ILE A . n A 1 286 LEU 286 287 287 LEU LEU A . n A 1 287 GLU 287 288 288 GLU GLU A . n A 1 288 ASP 288 289 289 ASP ASP A . n A 1 289 GLU 289 290 290 GLU GLU A . n A 1 290 PHE 290 291 291 PHE PHE A . n A 1 291 THR 291 292 292 THR THR A . n A 1 292 PRO 292 293 293 PRO PRO A . n A 1 293 PHE 293 294 294 PHE PHE A . n A 1 294 ASP 294 295 295 ASP ASP A . n A 1 295 VAL 295 296 296 VAL VAL A . n A 1 296 VAL 296 297 297 VAL VAL A . n A 1 297 ARG 297 298 298 ARG ARG A . n A 1 298 GLN 298 299 299 GLN GLN A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id X77 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id X77 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X77 1 301 1 X77 LIG A . C 3 HOH 1 401 3 HOH HOH A . C 3 HOH 2 402 8 HOH HOH A . C 3 HOH 3 403 16 HOH HOH A . C 3 HOH 4 404 1 HOH HOH A . C 3 HOH 5 405 5 HOH HOH A . C 3 HOH 6 406 23 HOH HOH A . C 3 HOH 7 407 10 HOH HOH A . C 3 HOH 8 408 7 HOH HOH A . C 3 HOH 9 409 12 HOH HOH A . C 3 HOH 10 410 9 HOH HOH A . C 3 HOH 11 411 19 HOH HOH A . C 3 HOH 12 412 22 HOH HOH A . C 3 HOH 13 413 20 HOH HOH A . C 3 HOH 14 414 4 HOH HOH A . C 3 HOH 15 415 14 HOH HOH A . C 3 HOH 16 416 6 HOH HOH A . C 3 HOH 17 417 21 HOH HOH A . C 3 HOH 18 418 11 HOH HOH A . C 3 HOH 19 419 15 HOH HOH A . C 3 HOH 20 420 18 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 47 ? CG ? A GLU 46 CG 2 1 Y 1 A GLU 47 ? CD ? A GLU 46 CD 3 1 Y 1 A GLU 47 ? OE1 ? A GLU 46 OE1 4 1 Y 1 A GLU 47 ? OE2 ? A GLU 46 OE2 5 1 Y 1 A ASN 51 ? CG ? A ASN 50 CG 6 1 Y 1 A ASN 51 ? OD1 ? A ASN 50 OD1 7 1 Y 1 A ASN 51 ? ND2 ? A ASN 50 ND2 8 1 Y 1 A SER 62 ? OG ? A SER 61 OG 9 1 Y 1 A HIS 64 ? CG ? A HIS 63 CG 10 1 Y 1 A HIS 64 ? ND1 ? A HIS 63 ND1 11 1 Y 1 A HIS 64 ? CD2 ? A HIS 63 CD2 12 1 Y 1 A HIS 64 ? CE1 ? A HIS 63 CE1 13 1 Y 1 A HIS 64 ? NE2 ? A HIS 63 NE2 14 1 Y 1 A LEU 67 ? CG ? A LEU 66 CG 15 1 Y 1 A LEU 67 ? CD1 ? A LEU 66 CD1 16 1 Y 1 A LEU 67 ? CD2 ? A LEU 66 CD2 17 1 Y 1 A GLN 69 ? CG ? A GLN 68 CG 18 1 Y 1 A GLN 69 ? CD ? A GLN 68 CD 19 1 Y 1 A GLN 69 ? OE1 ? A GLN 68 OE1 20 1 Y 1 A GLN 69 ? NE2 ? A GLN 68 NE2 21 1 Y 1 A ASN 72 ? CG ? A ASN 71 CG 22 1 Y 1 A ASN 72 ? OD1 ? A ASN 71 OD1 23 1 Y 1 A ASN 72 ? ND2 ? A ASN 71 ND2 24 1 Y 1 A VAL 73 ? CG1 ? A VAL 72 CG1 25 1 Y 1 A VAL 73 ? CG2 ? A VAL 72 CG2 26 1 Y 1 A GLN 74 ? CG ? A GLN 73 CG 27 1 Y 1 A GLN 74 ? CD ? A GLN 73 CD 28 1 Y 1 A GLN 74 ? OE1 ? A GLN 73 OE1 29 1 Y 1 A GLN 74 ? NE2 ? A GLN 73 NE2 30 1 Y 1 A ARG 76 ? CG ? A ARG 75 CG 31 1 Y 1 A ARG 76 ? CD ? A ARG 75 CD 32 1 Y 1 A ARG 76 ? NE ? A ARG 75 NE 33 1 Y 1 A ARG 76 ? CZ ? A ARG 75 CZ 34 1 Y 1 A ARG 76 ? NH1 ? A ARG 75 NH1 35 1 Y 1 A ARG 76 ? NH2 ? A ARG 75 NH2 36 1 Y 1 A LYS 90 ? CG ? A LYS 89 CG 37 1 Y 1 A LYS 90 ? CD ? A LYS 89 CD 38 1 Y 1 A LYS 90 ? CE ? A LYS 89 CE 39 1 Y 1 A LYS 90 ? NZ ? A LYS 89 NZ 40 1 Y 1 A LYS 100 ? CG ? A LYS 99 CG 41 1 Y 1 A LYS 100 ? CD ? A LYS 99 CD 42 1 Y 1 A LYS 100 ? CE ? A LYS 99 CE 43 1 Y 1 A LYS 100 ? NZ ? A LYS 99 NZ 44 1 Y 1 A LYS 102 ? CG ? A LYS 101 CG 45 1 Y 1 A LYS 102 ? CD ? A LYS 101 CD 46 1 Y 1 A LYS 102 ? CE ? A LYS 101 CE 47 1 Y 1 A LYS 102 ? NZ ? A LYS 101 NZ 48 1 Y 1 A ASP 153 ? CG ? A ASP 152 CG 49 1 Y 1 A ASP 153 ? OD1 ? A ASP 152 OD1 50 1 Y 1 A ASP 153 ? OD2 ? A ASP 152 OD2 51 1 Y 1 A TYR 154 ? CG ? A TYR 153 CG 52 1 Y 1 A TYR 154 ? CD1 ? A TYR 153 CD1 53 1 Y 1 A TYR 154 ? CD2 ? A TYR 153 CD2 54 1 Y 1 A TYR 154 ? CE1 ? A TYR 153 CE1 55 1 Y 1 A TYR 154 ? CE2 ? A TYR 153 CE2 56 1 Y 1 A TYR 154 ? CZ ? A TYR 153 CZ 57 1 Y 1 A TYR 154 ? OH ? A TYR 153 OH 58 1 Y 1 A ASP 155 ? CG ? A ASP 154 CG 59 1 Y 1 A ASP 155 ? OD1 ? A ASP 154 OD1 60 1 Y 1 A ASP 155 ? OD2 ? A ASP 154 OD2 61 1 Y 1 A ASN 228 ? CG ? A ASN 227 CG 62 1 Y 1 A ASN 228 ? OD1 ? A ASN 227 OD1 63 1 Y 1 A ASN 228 ? ND2 ? A ASN 227 ND2 64 1 Y 1 A ASP 229 ? CG ? A ASP 228 CG 65 1 Y 1 A ASP 229 ? OD1 ? A ASP 228 OD1 66 1 Y 1 A ASP 229 ? OD2 ? A ASP 228 OD2 67 1 Y 1 A VAL 233 ? CG1 ? A VAL 232 CG1 68 1 Y 1 A VAL 233 ? CG2 ? A VAL 232 CG2 69 1 Y 1 A LYS 236 ? CG ? A LYS 235 CG 70 1 Y 1 A LYS 236 ? CD ? A LYS 235 CD 71 1 Y 1 A LYS 236 ? CE ? A LYS 235 CE 72 1 Y 1 A LYS 236 ? NZ ? A LYS 235 NZ 73 1 Y 1 A LYS 269 ? CG ? A LYS 268 CG 74 1 Y 1 A LYS 269 ? CD ? A LYS 268 CD 75 1 Y 1 A LYS 269 ? CE ? A LYS 268 CE 76 1 Y 1 A LYS 269 ? NZ ? A LYS 268 NZ 77 1 Y 1 A GLU 270 ? CG ? A GLU 269 CG 78 1 Y 1 A GLU 270 ? CD ? A GLU 269 CD 79 1 Y 1 A GLU 270 ? OE1 ? A GLU 269 OE1 80 1 Y 1 A GLU 270 ? OE2 ? A GLU 269 OE2 81 1 Y 1 A ASN 274 ? CG ? A ASN 273 CG 82 1 Y 1 A ASN 274 ? OD1 ? A ASN 273 OD1 83 1 Y 1 A ASN 274 ? ND2 ? A ASN 273 ND2 84 1 Y 1 A ASN 277 ? CG ? A ASN 276 CG 85 1 Y 1 A ASN 277 ? OD1 ? A ASN 276 OD1 86 1 Y 1 A ASN 277 ? ND2 ? A ASN 276 ND2 87 1 Y 1 A ARG 279 ? CG ? A ARG 278 CG 88 1 Y 1 A ARG 279 ? CD ? A ARG 278 CD 89 1 Y 1 A ARG 279 ? NE ? A ARG 278 NE 90 1 Y 1 A ARG 279 ? CZ ? A ARG 278 CZ 91 1 Y 1 A ARG 279 ? NH1 ? A ARG 278 NH1 92 1 Y 1 A ARG 279 ? NH2 ? A ARG 278 NH2 93 1 Y 1 A ARG 298 ? CG ? A ARG 297 CG 94 1 Y 1 A ARG 298 ? CD ? A ARG 297 CD 95 1 Y 1 A ARG 298 ? NE ? A ARG 297 NE 96 1 Y 1 A ARG 298 ? CZ ? A ARG 297 CZ 97 1 Y 1 A ARG 298 ? NH1 ? A ARG 297 NH1 98 1 Y 1 A ARG 298 ? NH2 ? A ARG 297 NH2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 105.549 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8YKK _cell.details ? _cell.formula_units_Z ? _cell.length_a 106.440 _cell.length_a_esd ? _cell.length_b 84.872 _cell.length_b_esd ? _cell.length_c 54.310 _cell.length_c_esd ? _cell.volume 472668.269 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8YKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8YKK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.57 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Hepes pH7.5, 10% PEG8000, 8% Ethylene glycol' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-04-30 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979183 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979183 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 47.4766657559 _reflns.entry_id 8YKK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 37.82 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20609 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.195 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.43 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3022 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.060 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 54.5502967749 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8YKK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.30 _refine.ls_d_res_low 37.82 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 20306 _refine.ls_number_reflns_R_free 952 _refine.ls_number_reflns_R_work 19354 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.2865440465 _refine.ls_percent_reflns_R_free 4.688269477 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.214479341917 _refine.ls_R_factor_R_free 0.248031256075 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.212769316281 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33692917552 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.1543952963 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.352015334284 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 37.82 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 2270 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2216 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.00731995736321 ? 2303 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.914380587806 ? 3144 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0496201287454 ? 362 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.00646234392636 ? 405 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 6.37093829421 ? 1330 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.3037 2.4251 . . 126 2766 98.4008166043 . . . . 0.308352483236 . . . . . . . . . . . 0.375051035198 'X-RAY DIFFRACTION' 2.4251 2.577 . . 150 2714 97.4149659864 . . . . 0.268354118755 . . . . . . . . . . . 0.310413859944 'X-RAY DIFFRACTION' 2.577 2.776 . . 121 2698 96.5410958904 . . . . 0.252703021667 . . . . . . . . . . . 0.304581389448 'X-RAY DIFFRACTION' 2.776 3.0552 . . 130 2737 97.4838490309 . . . . 0.253731475998 . . . . . . . . . . . 0.289760952453 'X-RAY DIFFRACTION' 3.0552 3.497 . . 128 2803 99.3559322034 . . . . 0.245060286273 . . . . . . . . . . . 0.293376965758 'X-RAY DIFFRACTION' 3.497 4.4048 . . 131 2813 99.4594594595 . . . . 0.20001222125 . . . . . . . . . . . 0.228922950851 'X-RAY DIFFRACTION' 4.4048 37.82 . . 166 2823 99.3023255814 . . . . 0.170071447731 . . . . . . . . . . . 0.211392678783 # _struct.entry_id 8YKK _struct.title 'Crystal structure of SARS main protease in complex with X77' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8YKK _struct_keywords.text 'VIRAL PROTEIN-INHIBITOR COMPLEX' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS _struct_ref.pdbx_db_accession P0C6X7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHS MQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCY MHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ ; _struct_ref.pdbx_align_begin 3242 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8YKK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 298 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0C6X7 _struct_ref_seq.db_align_beg 3242 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 3539 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 299 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1840 ? 1 MORE -8 ? 1 'SSA (A^2)' 25080 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 9 ? GLY A 14 ? SER A 10 GLY A 15 1 ? 6 HELX_P HELX_P2 AA2 HIS A 40 ? CYS A 43 ? HIS A 41 CYS A 44 5 ? 4 HELX_P HELX_P3 AA3 ASN A 52 ? ARG A 59 ? ASN A 53 ARG A 60 1 ? 8 HELX_P HELX_P4 AA4 SER A 61 ? PHE A 65 ? SER A 62 PHE A 66 5 ? 5 HELX_P HELX_P5 AA5 ILE A 199 ? ASN A 213 ? ILE A 200 ASN A 214 1 ? 15 HELX_P HELX_P6 AA6 THR A 225 ? TYR A 236 ? THR A 226 TYR A 237 1 ? 12 HELX_P HELX_P7 AA7 THR A 242 ? LEU A 249 ? THR A 243 LEU A 250 1 ? 8 HELX_P HELX_P8 AA8 LEU A 249 ? GLY A 257 ? LEU A 250 GLY A 258 1 ? 9 HELX_P HELX_P9 AA9 ALA A 259 ? GLY A 274 ? ALA A 260 GLY A 275 1 ? 16 HELX_P HELX_P10 AB1 THR A 291 ? GLN A 298 ? THR A 292 GLN A 299 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 5 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 72 ? LEU A 74 ? VAL A 73 LEU A 75 AA1 2 LEU A 66 ? ALA A 69 ? LEU A 67 ALA A 70 AA1 3 MET A 16 ? CYS A 21 ? MET A 17 CYS A 22 AA1 4 THR A 24 ? LEU A 31 ? THR A 25 LEU A 32 AA1 5 THR A 34 ? PRO A 38 ? THR A 35 PRO A 39 AA1 6 LEU A 85 ? VAL A 90 ? LEU A 86 VAL A 91 AA1 7 VAL A 76 ? GLN A 82 ? VAL A 77 GLN A 83 AA2 1 LYS A 99 ? PHE A 102 ? LYS A 100 PHE A 103 AA2 2 CYS A 155 ? GLU A 165 ? CYS A 156 GLU A 166 AA2 3 VAL A 147 ? ASP A 152 ? VAL A 148 ASP A 153 AA2 4 THR A 110 ? TYR A 117 ? THR A 111 TYR A 118 AA2 5 SER A 120 ? ALA A 128 ? SER A 121 ALA A 129 AA3 1 LYS A 99 ? PHE A 102 ? LYS A 100 PHE A 103 AA3 2 CYS A 155 ? GLU A 165 ? CYS A 156 GLU A 166 AA3 3 HIS A 171 ? THR A 174 ? HIS A 172 THR A 175 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 74 ? O LEU A 75 N VAL A 67 ? N VAL A 68 AA1 2 3 O LEU A 66 ? O LEU A 67 N THR A 20 ? N THR A 21 AA1 3 4 N VAL A 17 ? N VAL A 18 O GLY A 28 ? O GLY A 29 AA1 4 5 N LEU A 29 ? N LEU A 30 O TYR A 36 ? O TYR A 37 AA1 5 6 N CYS A 37 ? N CYS A 38 O LEU A 86 ? O LEU A 87 AA1 6 7 O ARG A 87 ? O ARG A 88 N SER A 80 ? N SER A 81 AA2 1 2 N LYS A 99 ? N LYS A 100 O VAL A 156 ? O VAL A 157 AA2 2 3 O SER A 157 ? O SER A 158 N ASN A 150 ? N ASN A 151 AA2 3 4 O PHE A 149 ? O PHE A 150 N SER A 112 ? N SER A 113 AA2 4 5 N ALA A 115 ? N ALA A 116 O SER A 122 ? O SER A 123 AA3 1 2 N LYS A 99 ? N LYS A 100 O VAL A 156 ? O VAL A 157 AA3 2 3 N MET A 164 ? N MET A 165 O ALA A 172 ? O ALA A 173 # _pdbx_entry_details.entry_id 8YKK _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OG1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 THR _pdbx_validate_symm_contact.auth_seq_id_1 285 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OG1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 THR _pdbx_validate_symm_contact.auth_seq_id_2 285 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 33 ? ? 51.73 -119.49 2 1 ASN A 51 ? ? -144.73 59.78 3 1 ASN A 84 ? ? 46.24 -115.05 4 1 TYR A 154 ? ? 59.15 -117.95 5 1 ASP A 176 ? ? -74.25 -168.20 6 1 PRO A 184 ? ? -93.29 39.03 7 1 ALA A 191 ? ? -104.84 76.50 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 X77 C02 C N N 391 X77 C04 C N R 392 X77 C05 C N N 393 X77 C07 C N N 394 X77 C08 C N N 395 X77 C09 C N N 396 X77 C10 C N N 397 X77 C11 C N N 398 X77 C12 C N N 399 X77 C14 C Y N 400 X77 C15 C Y N 401 X77 C16 C Y N 402 X77 C17 C Y N 403 X77 C19 C Y N 404 X77 C20 C Y N 405 X77 C21 C Y N 406 X77 C22 C Y N 407 X77 C23 C Y N 408 X77 C24 C N N 409 X77 C25 C N N 410 X77 C26 C N N 411 X77 C27 C N N 412 X77 C28 C Y N 413 X77 C29 C Y N 414 X77 C30 C Y N 415 X77 C31 C Y N 416 X77 C33 C Y N 417 X77 N03 N N N 418 X77 N06 N N N 419 X77 N18 N Y N 420 X77 N32 N Y N 421 X77 N34 N Y N 422 X77 O01 O N N 423 X77 O13 O N N 424 X77 H041 H N N 425 X77 H071 H N N 426 X77 H081 H N N 427 X77 H082 H N N 428 X77 H091 H N N 429 X77 H092 H N N 430 X77 H101 H N N 431 X77 H102 H N N 432 X77 H112 H N N 433 X77 H111 H N N 434 X77 H121 H N N 435 X77 H122 H N N 436 X77 H151 H N N 437 X77 H161 H N N 438 X77 H171 H N N 439 X77 H191 H N N 440 X77 H211 H N N 441 X77 H221 H N N 442 X77 H251 H N N 443 X77 H252 H N N 444 X77 H253 H N N 445 X77 H261 H N N 446 X77 H263 H N N 447 X77 H262 H N N 448 X77 H272 H N N 449 X77 H273 H N N 450 X77 H271 H N N 451 X77 H281 H N N 452 X77 H291 H N N 453 X77 H311 H N N 454 X77 H331 H N N 455 X77 H061 H N N 456 X77 H1 H N N 457 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 X77 C33 N32 sing Y N 376 X77 C33 N34 doub Y N 377 X77 N32 C31 sing Y N 378 X77 N34 C30 sing Y N 379 X77 C31 C30 doub Y N 380 X77 C30 C02 sing N N 381 X77 C27 C24 sing N N 382 X77 C02 O01 doub N N 383 X77 C02 N03 sing N N 384 X77 C26 C24 sing N N 385 X77 C28 C29 doub Y N 386 X77 C28 C23 sing Y N 387 X77 C24 C23 sing N N 388 X77 C24 C25 sing N N 389 X77 C29 C20 sing Y N 390 X77 C23 C22 doub Y N 391 X77 C20 N03 sing N N 392 X77 C20 C21 doub Y N 393 X77 C22 C21 sing Y N 394 X77 N03 C04 sing N N 395 X77 C19 N18 doub Y N 396 X77 C19 C14 sing Y N 397 X77 C04 C14 sing N N 398 X77 C04 C05 sing N N 399 X77 N18 C17 sing Y N 400 X77 C14 C15 doub Y N 401 X77 O13 C05 doub N N 402 X77 C17 C16 doub Y N 403 X77 C05 N06 sing N N 404 X77 C15 C16 sing Y N 405 X77 N06 C07 sing N N 406 X77 C12 C07 sing N N 407 X77 C12 C11 sing N N 408 X77 C07 C08 sing N N 409 X77 C11 C10 sing N N 410 X77 C08 C09 sing N N 411 X77 C10 C09 sing N N 412 X77 C04 H041 sing N N 413 X77 C07 H071 sing N N 414 X77 C08 H081 sing N N 415 X77 C08 H082 sing N N 416 X77 C09 H091 sing N N 417 X77 C09 H092 sing N N 418 X77 C10 H101 sing N N 419 X77 C10 H102 sing N N 420 X77 C11 H112 sing N N 421 X77 C11 H111 sing N N 422 X77 C12 H121 sing N N 423 X77 C12 H122 sing N N 424 X77 C15 H151 sing N N 425 X77 C16 H161 sing N N 426 X77 C17 H171 sing N N 427 X77 C19 H191 sing N N 428 X77 C21 H211 sing N N 429 X77 C22 H221 sing N N 430 X77 C25 H251 sing N N 431 X77 C25 H252 sing N N 432 X77 C25 H253 sing N N 433 X77 C26 H261 sing N N 434 X77 C26 H263 sing N N 435 X77 C26 H262 sing N N 436 X77 C27 H272 sing N N 437 X77 C27 H273 sing N N 438 X77 C27 H271 sing N N 439 X77 C28 H281 sing N N 440 X77 C29 H291 sing N N 441 X77 C31 H311 sing N N 442 X77 C33 H331 sing N N 443 X77 N06 H061 sing N N 444 X77 N32 H1 sing N N 445 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8J33 _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8YKK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.009395 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002614 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011782 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019112 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 1.23737 29.19336 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_