HEADER ISOMERASE 12-MAR-24 8YO1 TITLE STRUCTURE OF PHAGE T6 TOPOISOMERASE II ATPASE DOMAIN BOUND WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE (ATP-HYDROLYZING); COMPND 3 CHAIN: C, D; COMPND 4 SYNONYM: PHAGE T6 TOPOISOMERASE II GP39 SUBUNIT; COMPND 5 EC: 5.6.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T6; SOURCE 3 ORGANISM_TAXID: 10666; SOURCE 4 GENE: ECT6_00003; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOPOISOMERASE II, ISOMERASE EXPDTA ELECTRON MICROSCOPY AUTHOR Y.T.CHEN,Y.H.XIN REVDAT 1 25-SEP-24 8YO1 0 JRNL AUTH Y.T.CHEN,Y.H.XIN,R.Q.XIAN JRNL TITL STRUCTURE OF PHAGE T6 TOPOISOMERASE II ATPASE DOMAIN BOUND JRNL TITL 2 WITH AMPPNP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.550 REMARK 3 NUMBER OF PARTICLES : 80615 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8YO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300044646. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PHAGE T6 TOPOISOMERASE II REMARK 245 ATPASE DOMAIN BOUND WITH AMPPNP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 374 REMARK 465 LEU C 375 REMARK 465 ALA C 376 REMARK 465 ALA C 377 REMARK 465 GLU C 378 REMARK 465 LYS C 379 REMARK 465 ALA C 380 REMARK 465 ALA C 381 REMARK 465 GLU C 382 REMARK 465 THR C 383 REMARK 465 LYS C 384 REMARK 465 ALA C 385 REMARK 465 ALA C 386 REMARK 465 LYS C 387 REMARK 465 LYS C 388 REMARK 465 ALA C 389 REMARK 465 SER C 390 REMARK 465 LYS C 391 REMARK 465 ALA C 392 REMARK 465 LYS C 393 REMARK 465 VAL C 394 REMARK 465 HIS C 395 REMARK 465 LYS C 396 REMARK 465 HIS C 397 REMARK 465 ILE C 398 REMARK 465 LYS C 399 REMARK 465 ALA C 400 REMARK 465 ASN C 401 REMARK 465 LEU C 402 REMARK 465 CYS C 403 REMARK 465 GLY C 404 REMARK 465 LYS C 405 REMARK 465 ASP C 406 REMARK 465 ALA C 407 REMARK 465 ASP C 408 REMARK 465 THR C 409 REMARK 465 THR C 410 REMARK 465 LEU C 411 REMARK 465 PHE C 412 REMARK 465 LEU C 413 REMARK 465 THR C 414 REMARK 465 GLU C 415 REMARK 465 GLY C 416 REMARK 465 ASP C 417 REMARK 465 SER C 418 REMARK 465 ALA C 419 REMARK 465 ILE C 420 REMARK 465 GLY C 421 REMARK 465 TYR C 422 REMARK 465 LEU C 423 REMARK 465 ILE C 424 REMARK 465 ASP C 425 REMARK 465 VAL C 426 REMARK 465 ARG C 427 REMARK 465 ASP C 428 REMARK 465 LYS C 429 REMARK 465 GLU C 430 REMARK 465 LEU C 431 REMARK 465 HIS C 432 REMARK 465 GLY C 433 REMARK 465 GLY C 434 REMARK 465 TYR C 435 REMARK 465 PRO C 436 REMARK 465 LEU C 437 REMARK 465 ARG C 438 REMARK 465 GLY C 439 REMARK 465 LYS C 440 REMARK 465 VAL C 441 REMARK 465 LEU C 442 REMARK 465 ASN C 443 REMARK 465 SER C 444 REMARK 465 TRP C 445 REMARK 465 GLY C 446 REMARK 465 MET C 447 REMARK 465 SER C 448 REMARK 465 TYR C 449 REMARK 465 ALA C 450 REMARK 465 ASP C 451 REMARK 465 MET C 452 REMARK 465 LEU C 453 REMARK 465 LYS C 454 REMARK 465 ASN C 455 REMARK 465 LYS C 456 REMARK 465 GLU C 457 REMARK 465 LEU C 458 REMARK 465 PHE C 459 REMARK 465 ASP C 460 REMARK 465 ILE C 461 REMARK 465 CYS C 462 REMARK 465 ALA C 463 REMARK 465 ILE C 464 REMARK 465 THR C 465 REMARK 465 GLY C 466 REMARK 465 LEU C 467 REMARK 465 VAL C 468 REMARK 465 LEU C 469 REMARK 465 GLY C 470 REMARK 465 GLU C 471 REMARK 465 LYS C 472 REMARK 465 ALA C 473 REMARK 465 GLU C 474 REMARK 465 ASN C 475 REMARK 465 LEU C 476 REMARK 465 ASN C 477 REMARK 465 TYR C 478 REMARK 465 HIS C 479 REMARK 465 ASN C 480 REMARK 465 ILE C 481 REMARK 465 ALA C 482 REMARK 465 ILE C 483 REMARK 465 MET C 484 REMARK 465 THR C 485 REMARK 465 ASP C 486 REMARK 465 ALA C 487 REMARK 465 ASP C 488 REMARK 465 HIS C 489 REMARK 465 ASP C 490 REMARK 465 GLY C 491 REMARK 465 LEU C 492 REMARK 465 GLY C 493 REMARK 465 SER C 494 REMARK 465 ILE C 495 REMARK 465 TYR C 496 REMARK 465 PRO C 497 REMARK 465 SER C 498 REMARK 465 LEU C 499 REMARK 465 LEU C 500 REMARK 465 GLY C 501 REMARK 465 PHE C 502 REMARK 465 PHE C 503 REMARK 465 SER C 504 REMARK 465 ASN C 505 REMARK 465 TRP C 506 REMARK 465 PRO C 507 REMARK 465 GLU C 508 REMARK 465 LEU C 509 REMARK 465 PHE C 510 REMARK 465 GLU C 511 REMARK 465 GLN C 512 REMARK 465 GLY C 513 REMARK 465 ARG C 514 REMARK 465 ILE C 515 REMARK 465 ARG C 516 REMARK 465 PHE C 517 REMARK 465 VAL C 518 REMARK 465 LYS C 519 REMARK 465 THR C 520 REMARK 465 PRO C 521 REMARK 465 VAL C 522 REMARK 465 ILE C 523 REMARK 465 ILE C 524 REMARK 465 ALA C 525 REMARK 465 HIS C 526 REMARK 465 VAL C 527 REMARK 465 GLY C 528 REMARK 465 LYS C 529 REMARK 465 LYS C 530 REMARK 465 GLN C 531 REMARK 465 GLU C 532 REMARK 465 TRP C 533 REMARK 465 PHE C 534 REMARK 465 TYR C 535 REMARK 465 THR C 536 REMARK 465 VAL C 537 REMARK 465 ALA C 538 REMARK 465 GLU C 539 REMARK 465 TYR C 540 REMARK 465 GLU C 541 REMARK 465 SER C 542 REMARK 465 ALA C 543 REMARK 465 LYS C 544 REMARK 465 ASP C 545 REMARK 465 ALA C 546 REMARK 465 LEU C 547 REMARK 465 PRO C 548 REMARK 465 LYS C 549 REMARK 465 HIS C 550 REMARK 465 SER C 551 REMARK 465 ILE C 552 REMARK 465 ARG C 553 REMARK 465 TYR C 554 REMARK 465 ILE C 555 REMARK 465 LYS C 556 REMARK 465 GLY C 557 REMARK 465 LEU C 558 REMARK 465 GLY C 559 REMARK 465 SER C 560 REMARK 465 LEU C 561 REMARK 465 GLU C 562 REMARK 465 LYS C 563 REMARK 465 SER C 564 REMARK 465 GLU C 565 REMARK 465 TYR C 566 REMARK 465 ARG C 567 REMARK 465 GLU C 568 REMARK 465 MET C 569 REMARK 465 ILE C 570 REMARK 465 GLN C 571 REMARK 465 ASN C 572 REMARK 465 PRO C 573 REMARK 465 VAL C 574 REMARK 465 TYR C 575 REMARK 465 ASP C 576 REMARK 465 VAL C 577 REMARK 465 VAL C 578 REMARK 465 LYS C 579 REMARK 465 LEU C 580 REMARK 465 PRO C 581 REMARK 465 GLU C 582 REMARK 465 ASN C 583 REMARK 465 TRP C 584 REMARK 465 LYS C 585 REMARK 465 GLU C 586 REMARK 465 LEU C 587 REMARK 465 PHE C 588 REMARK 465 GLU C 589 REMARK 465 MET C 590 REMARK 465 LEU C 591 REMARK 465 MET C 592 REMARK 465 GLY C 593 REMARK 465 ASP C 594 REMARK 465 ASN C 595 REMARK 465 ALA C 596 REMARK 465 ASP C 597 REMARK 465 LEU C 598 REMARK 465 ARG C 599 REMARK 465 LYS C 600 REMARK 465 GLU C 601 REMARK 465 TRP C 602 REMARK 465 MET C 603 REMARK 465 SER C 604 REMARK 465 GLN C 605 REMARK 465 HIS C 606 REMARK 465 HIS C 607 REMARK 465 HIS C 608 REMARK 465 HIS C 609 REMARK 465 HIS C 610 REMARK 465 HIS C 611 REMARK 465 LYS D 374 REMARK 465 LEU D 375 REMARK 465 ALA D 376 REMARK 465 ALA D 377 REMARK 465 GLU D 378 REMARK 465 LYS D 379 REMARK 465 ALA D 380 REMARK 465 ALA D 381 REMARK 465 GLU D 382 REMARK 465 THR D 383 REMARK 465 LYS D 384 REMARK 465 ALA D 385 REMARK 465 ALA D 386 REMARK 465 LYS D 387 REMARK 465 LYS D 388 REMARK 465 ALA D 389 REMARK 465 SER D 390 REMARK 465 LYS D 391 REMARK 465 ALA D 392 REMARK 465 LYS D 393 REMARK 465 VAL D 394 REMARK 465 HIS D 395 REMARK 465 LYS D 396 REMARK 465 HIS D 397 REMARK 465 ILE D 398 REMARK 465 LYS D 399 REMARK 465 ALA D 400 REMARK 465 ASN D 401 REMARK 465 LEU D 402 REMARK 465 CYS D 403 REMARK 465 GLY D 404 REMARK 465 LYS D 405 REMARK 465 ASP D 406 REMARK 465 ALA D 407 REMARK 465 ASP D 408 REMARK 465 THR D 409 REMARK 465 THR D 410 REMARK 465 LEU D 411 REMARK 465 PHE D 412 REMARK 465 LEU D 413 REMARK 465 THR D 414 REMARK 465 GLU D 415 REMARK 465 GLY D 416 REMARK 465 ASP D 417 REMARK 465 SER D 418 REMARK 465 ALA D 419 REMARK 465 ILE D 420 REMARK 465 GLY D 421 REMARK 465 TYR D 422 REMARK 465 LEU D 423 REMARK 465 ILE D 424 REMARK 465 ASP D 425 REMARK 465 VAL D 426 REMARK 465 ARG D 427 REMARK 465 ASP D 428 REMARK 465 LYS D 429 REMARK 465 GLU D 430 REMARK 465 LEU D 431 REMARK 465 HIS D 432 REMARK 465 GLY D 433 REMARK 465 GLY D 434 REMARK 465 TYR D 435 REMARK 465 PRO D 436 REMARK 465 LEU D 437 REMARK 465 ARG D 438 REMARK 465 GLY D 439 REMARK 465 LYS D 440 REMARK 465 VAL D 441 REMARK 465 LEU D 442 REMARK 465 ASN D 443 REMARK 465 SER D 444 REMARK 465 TRP D 445 REMARK 465 GLY D 446 REMARK 465 MET D 447 REMARK 465 SER D 448 REMARK 465 TYR D 449 REMARK 465 ALA D 450 REMARK 465 ASP D 451 REMARK 465 MET D 452 REMARK 465 LEU D 453 REMARK 465 LYS D 454 REMARK 465 ASN D 455 REMARK 465 LYS D 456 REMARK 465 GLU D 457 REMARK 465 LEU D 458 REMARK 465 PHE D 459 REMARK 465 ASP D 460 REMARK 465 ILE D 461 REMARK 465 CYS D 462 REMARK 465 ALA D 463 REMARK 465 ILE D 464 REMARK 465 THR D 465 REMARK 465 GLY D 466 REMARK 465 LEU D 467 REMARK 465 VAL D 468 REMARK 465 LEU D 469 REMARK 465 GLY D 470 REMARK 465 GLU D 471 REMARK 465 LYS D 472 REMARK 465 ALA D 473 REMARK 465 GLU D 474 REMARK 465 ASN D 475 REMARK 465 LEU D 476 REMARK 465 ASN D 477 REMARK 465 TYR D 478 REMARK 465 HIS D 479 REMARK 465 ASN D 480 REMARK 465 ILE D 481 REMARK 465 ALA D 482 REMARK 465 ILE D 483 REMARK 465 MET D 484 REMARK 465 THR D 485 REMARK 465 ASP D 486 REMARK 465 ALA D 487 REMARK 465 ASP D 488 REMARK 465 HIS D 489 REMARK 465 ASP D 490 REMARK 465 GLY D 491 REMARK 465 LEU D 492 REMARK 465 GLY D 493 REMARK 465 SER D 494 REMARK 465 ILE D 495 REMARK 465 TYR D 496 REMARK 465 PRO D 497 REMARK 465 SER D 498 REMARK 465 LEU D 499 REMARK 465 LEU D 500 REMARK 465 GLY D 501 REMARK 465 PHE D 502 REMARK 465 PHE D 503 REMARK 465 SER D 504 REMARK 465 ASN D 505 REMARK 465 TRP D 506 REMARK 465 PRO D 507 REMARK 465 GLU D 508 REMARK 465 LEU D 509 REMARK 465 PHE D 510 REMARK 465 GLU D 511 REMARK 465 GLN D 512 REMARK 465 GLY D 513 REMARK 465 ARG D 514 REMARK 465 ILE D 515 REMARK 465 ARG D 516 REMARK 465 PHE D 517 REMARK 465 VAL D 518 REMARK 465 LYS D 519 REMARK 465 THR D 520 REMARK 465 PRO D 521 REMARK 465 VAL D 522 REMARK 465 ILE D 523 REMARK 465 ILE D 524 REMARK 465 ALA D 525 REMARK 465 HIS D 526 REMARK 465 VAL D 527 REMARK 465 GLY D 528 REMARK 465 LYS D 529 REMARK 465 LYS D 530 REMARK 465 GLN D 531 REMARK 465 GLU D 532 REMARK 465 TRP D 533 REMARK 465 PHE D 534 REMARK 465 TYR D 535 REMARK 465 THR D 536 REMARK 465 VAL D 537 REMARK 465 ALA D 538 REMARK 465 GLU D 539 REMARK 465 TYR D 540 REMARK 465 GLU D 541 REMARK 465 SER D 542 REMARK 465 ALA D 543 REMARK 465 LYS D 544 REMARK 465 ASP D 545 REMARK 465 ALA D 546 REMARK 465 LEU D 547 REMARK 465 PRO D 548 REMARK 465 LYS D 549 REMARK 465 HIS D 550 REMARK 465 SER D 551 REMARK 465 ILE D 552 REMARK 465 ARG D 553 REMARK 465 TYR D 554 REMARK 465 ILE D 555 REMARK 465 LYS D 556 REMARK 465 GLY D 557 REMARK 465 LEU D 558 REMARK 465 GLY D 559 REMARK 465 SER D 560 REMARK 465 LEU D 561 REMARK 465 GLU D 562 REMARK 465 LYS D 563 REMARK 465 SER D 564 REMARK 465 GLU D 565 REMARK 465 TYR D 566 REMARK 465 ARG D 567 REMARK 465 GLU D 568 REMARK 465 MET D 569 REMARK 465 ILE D 570 REMARK 465 GLN D 571 REMARK 465 ASN D 572 REMARK 465 PRO D 573 REMARK 465 VAL D 574 REMARK 465 TYR D 575 REMARK 465 ASP D 576 REMARK 465 VAL D 577 REMARK 465 VAL D 578 REMARK 465 LYS D 579 REMARK 465 LEU D 580 REMARK 465 PRO D 581 REMARK 465 GLU D 582 REMARK 465 ASN D 583 REMARK 465 TRP D 584 REMARK 465 LYS D 585 REMARK 465 GLU D 586 REMARK 465 LEU D 587 REMARK 465 PHE D 588 REMARK 465 GLU D 589 REMARK 465 MET D 590 REMARK 465 LEU D 591 REMARK 465 MET D 592 REMARK 465 GLY D 593 REMARK 465 ASP D 594 REMARK 465 ASN D 595 REMARK 465 ALA D 596 REMARK 465 ASP D 597 REMARK 465 LEU D 598 REMARK 465 ARG D 599 REMARK 465 LYS D 600 REMARK 465 GLU D 601 REMARK 465 TRP D 602 REMARK 465 MET D 603 REMARK 465 SER D 604 REMARK 465 GLN D 605 REMARK 465 HIS D 606 REMARK 465 HIS D 607 REMARK 465 HIS D 608 REMARK 465 HIS D 609 REMARK 465 HIS D 610 REMARK 465 HIS D 611 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR D 140 OG SER D 144 2.12 REMARK 500 O VAL C 109 OG1 THR C 113 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY C 136 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 81 51.57 36.90 REMARK 500 ILE C 142 -19.26 -49.99 REMARK 500 MET C 166 -9.51 73.52 REMARK 500 ASN C 269 -101.27 55.54 REMARK 500 ARG D 18 50.04 -119.36 REMARK 500 ASN D 81 41.78 39.77 REMARK 500 ASN D 88 31.84 -99.61 REMARK 500 PHE D 143 31.42 -93.35 REMARK 500 MET D 166 -9.83 72.22 REMARK 500 ASN D 269 -96.00 54.47 REMARK 500 ASP D 320 49.79 36.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-39433 RELATED DB: EMDB REMARK 900 STRUCTURE OF PHAGE T6 TOPOISOMERASE II ATPASE DOMAIN BOUND WITH REMARK 900 AMPPNP DBREF1 8YO1 C 1 605 UNP A0A346FJ89_BPT6 DBREF2 8YO1 C A0A346FJ89 1 605 DBREF1 8YO1 D 1 605 UNP A0A346FJ89_BPT6 DBREF2 8YO1 D A0A346FJ89 1 605 SEQADV 8YO1 HIS C 606 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS C 607 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS C 608 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS C 609 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS C 610 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS C 611 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS D 606 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS D 607 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS D 608 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS D 609 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS D 610 UNP A0A346FJ8 EXPRESSION TAG SEQADV 8YO1 HIS D 611 UNP A0A346FJ8 EXPRESSION TAG SEQRES 1 C 611 MET ILE LYS ASN GLU ILE LYS ILE LEU SER ASP ILE GLU SEQRES 2 C 611 HIS ILE LYS LYS ARG SER GLY MET TYR ILE GLY SER SER SEQRES 3 C 611 ALA ASN GLU MET HIS GLU ARG PHE LEU PHE GLY LYS TRP SEQRES 4 C 611 GLU SER VAL GLN TYR VAL PRO GLY LEU VAL LYS LEU ILE SEQRES 5 C 611 ASP GLU ILE ILE ASP ASN SER VAL ASP GLU GLY ILE ARG SEQRES 6 C 611 THR LYS PHE LYS PHE ALA ASN LYS ILE ASN VAL THR ILE SEQRES 7 C 611 LYS ASN ASN GLN VAL THR VAL GLU ASP ASN GLY ARG GLY SEQRES 8 C 611 ILE PRO GLN ALA MET VAL LYS THR PRO THR GLY GLU GLU SEQRES 9 C 611 ILE PRO GLY PRO VAL ALA ALA TRP THR ILE PRO LYS ALA SEQRES 10 C 611 GLY GLY ASN PHE GLY ASP ASP LYS GLU ARG VAL THR GLY SEQRES 11 C 611 GLY MET ASN GLY VAL GLY SER SER LEU THR ASN ILE PHE SEQRES 12 C 611 SER VAL MET PHE VAL GLY GLU THR GLY ASP GLY GLN ASN SEQRES 13 C 611 ASN ILE VAL VAL ARG CYS SER ASN GLY MET GLU ASN LYS SEQRES 14 C 611 SER TRP GLU THR ILE PRO GLY LYS TRP LYS GLY THR ARG SEQRES 15 C 611 VAL THR PHE ILE PRO ASP PHE MET SER PHE GLU THR ASN SEQRES 16 C 611 GLU LEU SER GLN VAL TYR LEU ASP ILE THR LEU ASP ARG SEQRES 17 C 611 LEU GLN THR LEU ALA VAL VAL TYR PRO ASP ILE GLN PHE SEQRES 18 C 611 THR PHE ASN GLY LYS LYS VAL GLN GLY ASN PHE LYS LYS SEQRES 19 C 611 TYR ALA ARG GLN TYR ASP GLU HIS ALA ILE VAL GLN GLU SEQRES 20 C 611 GLN GLU ASN CYS SER ILE ALA VAL GLY ARG SER PRO ASP SEQRES 21 C 611 GLY PHE ARG GLN LEU THR TYR VAL ASN ASN ILE HIS THR SEQRES 22 C 611 LYS ASN GLY GLY HIS HIS ILE ASP CYS VAL MET ASP ASP SEQRES 23 C 611 ILE CYS GLU ASP LEU ILE PRO GLN ILE LYS ARG LYS PHE SEQRES 24 C 611 LYS ILE ASP VAL THR LYS ALA ARG VAL LYS GLU CYS LEU SEQRES 25 C 611 THR ILE VAL MET PHE VAL ARG ASP MET LYS ASN MET ARG SEQRES 26 C 611 PHE ASP SER GLN THR LYS GLU ARG LEU THR SER PRO PHE SEQRES 27 C 611 GLY GLU ILE ARG SER HIS ILE GLN LEU ASP ALA LYS LYS SEQRES 28 C 611 ILE SER ARG ALA ILE LEU ASN ASN GLU ALA ILE LEU MET SEQRES 29 C 611 PRO ILE ILE GLU ALA ALA LEU ALA ARG LYS LEU ALA ALA SEQRES 30 C 611 GLU LYS ALA ALA GLU THR LYS ALA ALA LYS LYS ALA SER SEQRES 31 C 611 LYS ALA LYS VAL HIS LYS HIS ILE LYS ALA ASN LEU CYS SEQRES 32 C 611 GLY LYS ASP ALA ASP THR THR LEU PHE LEU THR GLU GLY SEQRES 33 C 611 ASP SER ALA ILE GLY TYR LEU ILE ASP VAL ARG ASP LYS SEQRES 34 C 611 GLU LEU HIS GLY GLY TYR PRO LEU ARG GLY LYS VAL LEU SEQRES 35 C 611 ASN SER TRP GLY MET SER TYR ALA ASP MET LEU LYS ASN SEQRES 36 C 611 LYS GLU LEU PHE ASP ILE CYS ALA ILE THR GLY LEU VAL SEQRES 37 C 611 LEU GLY GLU LYS ALA GLU ASN LEU ASN TYR HIS ASN ILE SEQRES 38 C 611 ALA ILE MET THR ASP ALA ASP HIS ASP GLY LEU GLY SER SEQRES 39 C 611 ILE TYR PRO SER LEU LEU GLY PHE PHE SER ASN TRP PRO SEQRES 40 C 611 GLU LEU PHE GLU GLN GLY ARG ILE ARG PHE VAL LYS THR SEQRES 41 C 611 PRO VAL ILE ILE ALA HIS VAL GLY LYS LYS GLN GLU TRP SEQRES 42 C 611 PHE TYR THR VAL ALA GLU TYR GLU SER ALA LYS ASP ALA SEQRES 43 C 611 LEU PRO LYS HIS SER ILE ARG TYR ILE LYS GLY LEU GLY SEQRES 44 C 611 SER LEU GLU LYS SER GLU TYR ARG GLU MET ILE GLN ASN SEQRES 45 C 611 PRO VAL TYR ASP VAL VAL LYS LEU PRO GLU ASN TRP LYS SEQRES 46 C 611 GLU LEU PHE GLU MET LEU MET GLY ASP ASN ALA ASP LEU SEQRES 47 C 611 ARG LYS GLU TRP MET SER GLN HIS HIS HIS HIS HIS HIS SEQRES 1 D 611 MET ILE LYS ASN GLU ILE LYS ILE LEU SER ASP ILE GLU SEQRES 2 D 611 HIS ILE LYS LYS ARG SER GLY MET TYR ILE GLY SER SER SEQRES 3 D 611 ALA ASN GLU MET HIS GLU ARG PHE LEU PHE GLY LYS TRP SEQRES 4 D 611 GLU SER VAL GLN TYR VAL PRO GLY LEU VAL LYS LEU ILE SEQRES 5 D 611 ASP GLU ILE ILE ASP ASN SER VAL ASP GLU GLY ILE ARG SEQRES 6 D 611 THR LYS PHE LYS PHE ALA ASN LYS ILE ASN VAL THR ILE SEQRES 7 D 611 LYS ASN ASN GLN VAL THR VAL GLU ASP ASN GLY ARG GLY SEQRES 8 D 611 ILE PRO GLN ALA MET VAL LYS THR PRO THR GLY GLU GLU SEQRES 9 D 611 ILE PRO GLY PRO VAL ALA ALA TRP THR ILE PRO LYS ALA SEQRES 10 D 611 GLY GLY ASN PHE GLY ASP ASP LYS GLU ARG VAL THR GLY SEQRES 11 D 611 GLY MET ASN GLY VAL GLY SER SER LEU THR ASN ILE PHE SEQRES 12 D 611 SER VAL MET PHE VAL GLY GLU THR GLY ASP GLY GLN ASN SEQRES 13 D 611 ASN ILE VAL VAL ARG CYS SER ASN GLY MET GLU ASN LYS SEQRES 14 D 611 SER TRP GLU THR ILE PRO GLY LYS TRP LYS GLY THR ARG SEQRES 15 D 611 VAL THR PHE ILE PRO ASP PHE MET SER PHE GLU THR ASN SEQRES 16 D 611 GLU LEU SER GLN VAL TYR LEU ASP ILE THR LEU ASP ARG SEQRES 17 D 611 LEU GLN THR LEU ALA VAL VAL TYR PRO ASP ILE GLN PHE SEQRES 18 D 611 THR PHE ASN GLY LYS LYS VAL GLN GLY ASN PHE LYS LYS SEQRES 19 D 611 TYR ALA ARG GLN TYR ASP GLU HIS ALA ILE VAL GLN GLU SEQRES 20 D 611 GLN GLU ASN CYS SER ILE ALA VAL GLY ARG SER PRO ASP SEQRES 21 D 611 GLY PHE ARG GLN LEU THR TYR VAL ASN ASN ILE HIS THR SEQRES 22 D 611 LYS ASN GLY GLY HIS HIS ILE ASP CYS VAL MET ASP ASP SEQRES 23 D 611 ILE CYS GLU ASP LEU ILE PRO GLN ILE LYS ARG LYS PHE SEQRES 24 D 611 LYS ILE ASP VAL THR LYS ALA ARG VAL LYS GLU CYS LEU SEQRES 25 D 611 THR ILE VAL MET PHE VAL ARG ASP MET LYS ASN MET ARG SEQRES 26 D 611 PHE ASP SER GLN THR LYS GLU ARG LEU THR SER PRO PHE SEQRES 27 D 611 GLY GLU ILE ARG SER HIS ILE GLN LEU ASP ALA LYS LYS SEQRES 28 D 611 ILE SER ARG ALA ILE LEU ASN ASN GLU ALA ILE LEU MET SEQRES 29 D 611 PRO ILE ILE GLU ALA ALA LEU ALA ARG LYS LEU ALA ALA SEQRES 30 D 611 GLU LYS ALA ALA GLU THR LYS ALA ALA LYS LYS ALA SER SEQRES 31 D 611 LYS ALA LYS VAL HIS LYS HIS ILE LYS ALA ASN LEU CYS SEQRES 32 D 611 GLY LYS ASP ALA ASP THR THR LEU PHE LEU THR GLU GLY SEQRES 33 D 611 ASP SER ALA ILE GLY TYR LEU ILE ASP VAL ARG ASP LYS SEQRES 34 D 611 GLU LEU HIS GLY GLY TYR PRO LEU ARG GLY LYS VAL LEU SEQRES 35 D 611 ASN SER TRP GLY MET SER TYR ALA ASP MET LEU LYS ASN SEQRES 36 D 611 LYS GLU LEU PHE ASP ILE CYS ALA ILE THR GLY LEU VAL SEQRES 37 D 611 LEU GLY GLU LYS ALA GLU ASN LEU ASN TYR HIS ASN ILE SEQRES 38 D 611 ALA ILE MET THR ASP ALA ASP HIS ASP GLY LEU GLY SER SEQRES 39 D 611 ILE TYR PRO SER LEU LEU GLY PHE PHE SER ASN TRP PRO SEQRES 40 D 611 GLU LEU PHE GLU GLN GLY ARG ILE ARG PHE VAL LYS THR SEQRES 41 D 611 PRO VAL ILE ILE ALA HIS VAL GLY LYS LYS GLN GLU TRP SEQRES 42 D 611 PHE TYR THR VAL ALA GLU TYR GLU SER ALA LYS ASP ALA SEQRES 43 D 611 LEU PRO LYS HIS SER ILE ARG TYR ILE LYS GLY LEU GLY SEQRES 44 D 611 SER LEU GLU LYS SER GLU TYR ARG GLU MET ILE GLN ASN SEQRES 45 D 611 PRO VAL TYR ASP VAL VAL LYS LEU PRO GLU ASN TRP LYS SEQRES 46 D 611 GLU LEU PHE GLU MET LEU MET GLY ASP ASN ALA ASP LEU SEQRES 47 D 611 ARG LYS GLU TRP MET SER GLN HIS HIS HIS HIS HIS HIS HET ANP C 701 31 HET MG C 702 1 HET ANP D 701 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 MG MG 2+ HELIX 1 AA1 SER C 10 ARG C 18 1 9 HELIX 2 AA2 ARG C 18 GLY C 24 1 7 HELIX 3 AA3 VAL C 45 THR C 66 1 22 HELIX 4 AA4 PRO C 106 ILE C 114 1 9 HELIX 5 AA5 GLY C 136 PHE C 143 1 8 HELIX 6 AA6 SER C 198 TYR C 216 1 19 HELIX 7 AA7 ASN C 231 ASP C 240 1 10 HELIX 8 AA8 HIS C 278 LYS C 300 1 23 HELIX 9 AA9 THR C 304 GLU C 310 1 7 HELIX 10 AB1 PRO C 337 ILE C 345 1 9 HELIX 11 AB2 ASP C 348 ASN C 359 1 12 HELIX 12 AB3 ASN C 359 ARG C 373 1 15 HELIX 13 AB4 SER D 10 ARG D 18 1 9 HELIX 14 AB5 SER D 19 TYR D 22 5 4 HELIX 15 AB6 VAL D 45 THR D 66 1 22 HELIX 16 AB7 PRO D 106 ILE D 114 1 9 HELIX 17 AB8 VAL D 135 PHE D 143 1 9 HELIX 18 AB9 SER D 198 TYR D 216 1 19 HELIX 19 AC1 ASN D 231 ASP D 240 1 10 HELIX 20 AC2 HIS D 278 LYS D 300 1 23 HELIX 21 AC3 THR D 304 GLU D 310 1 7 HELIX 22 AC4 PRO D 337 ILE D 345 1 9 HELIX 23 AC5 ASP D 348 ASN D 358 1 11 HELIX 24 AC6 ILE D 362 ARG D 373 1 12 SHEET 1 AA1 2 LYS C 7 ILE C 8 0 SHEET 2 AA1 2 ALA D 117 GLY D 118 -1 O GLY D 118 N LYS C 7 SHEET 1 AA2 2 GLU C 29 HIS C 31 0 SHEET 2 AA2 2 VAL C 42 TYR C 44 -1 O VAL C 42 N HIS C 31 SHEET 1 AA3 2 PHE C 34 LEU C 35 0 SHEET 2 AA3 2 LYS C 38 TRP C 39 -1 O LYS C 38 N LEU C 35 SHEET 1 AA4 8 ASN C 168 PRO C 175 0 SHEET 2 AA4 8 ASN C 156 SER C 163 -1 N ARG C 161 O SER C 170 SHEET 3 AA4 8 SER C 144 ASP C 153 -1 N THR C 151 O ILE C 158 SHEET 4 AA4 8 LYS C 179 PRO C 187 -1 O THR C 184 N VAL C 148 SHEET 5 AA4 8 VAL C 83 ASP C 87 -1 N VAL C 85 O VAL C 183 SHEET 6 AA4 8 ASN C 75 ILE C 78 -1 N THR C 77 O THR C 84 SHEET 7 AA4 8 THR C 222 PHE C 223 1 O THR C 222 N VAL C 76 SHEET 8 AA4 8 LYS C 226 LYS C 227 -1 O LYS C 226 N PHE C 223 SHEET 1 AA5 2 VAL C 97 LYS C 98 0 SHEET 2 AA5 2 GLU C 104 ILE C 105 -1 O ILE C 105 N VAL C 97 SHEET 1 AA6 2 ALA C 117 GLY C 118 0 SHEET 2 AA6 2 LYS D 7 ILE D 8 -1 O LYS D 7 N GLY C 118 SHEET 1 AA7 5 ILE C 244 GLU C 247 0 SHEET 2 AA7 5 CYS C 251 VAL C 255 -1 O ILE C 253 N GLN C 246 SHEET 3 AA7 5 THR C 313 VAL C 318 -1 O VAL C 315 N ALA C 254 SHEET 4 AA7 5 ARG C 263 VAL C 268 1 N TYR C 267 O VAL C 318 SHEET 5 AA7 5 ILE C 271 HIS C 272 -1 O ILE C 271 N VAL C 268 SHEET 1 AA8 2 GLU D 29 LEU D 35 0 SHEET 2 AA8 2 LYS D 38 TYR D 44 -1 O LYS D 38 N LEU D 35 SHEET 1 AA9 8 ASN D 168 PRO D 175 0 SHEET 2 AA9 8 ASN D 156 SER D 163 -1 N ARG D 161 O SER D 170 SHEET 3 AA9 8 SER D 144 ASP D 153 -1 N THR D 151 O ILE D 158 SHEET 4 AA9 8 LYS D 179 PRO D 187 -1 O THR D 184 N VAL D 148 SHEET 5 AA9 8 VAL D 83 ASP D 87 -1 N VAL D 83 O PHE D 185 SHEET 6 AA9 8 ASN D 75 ILE D 78 -1 N ASN D 75 O GLU D 86 SHEET 7 AA9 8 THR D 222 PHE D 223 1 O THR D 222 N VAL D 76 SHEET 8 AA9 8 LYS D 226 LYS D 227 -1 O LYS D 226 N PHE D 223 SHEET 1 AB1 2 VAL D 97 LYS D 98 0 SHEET 2 AB1 2 GLU D 104 ILE D 105 -1 O ILE D 105 N VAL D 97 SHEET 1 AB2 5 ILE D 244 GLU D 247 0 SHEET 2 AB2 5 CYS D 251 VAL D 255 -1 O ILE D 253 N GLN D 246 SHEET 3 AB2 5 THR D 313 VAL D 318 -1 O VAL D 315 N ALA D 254 SHEET 4 AB2 5 ARG D 263 VAL D 268 1 N TYR D 267 O VAL D 318 SHEET 5 AB2 5 ILE D 271 HIS D 272 -1 O ILE D 271 N VAL D 268 LINK O1G ANP C 701 MG MG C 702 1555 1555 2.92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000