HEADER OXIDOREDUCTASE 22-MAR-24 8YS5 TITLE CRYO-EM STRUCTURE OF THE HELICOBACTER PYLORI OORDABC COMPLEX IN THE TITLE 2 APO-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE:ACCEPTOR OXIDOREDUCTASE; COMPND 3 CHAIN: D, F; COMPND 4 SYNONYM: 2-OXOGLUTARATE OXIDOREDUCTASE OORD SUBUNIT, 4FE-4S DICLUSTER COMPND 5 DOMAIN-CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 2-OXOGLUTARATE SYNTHASE SUBUNIT ALPHA; COMPND 9 CHAIN: A, G; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 2-OXOGLUTARATE FERREDOXIN OXIDOREDUCTASE SUBUNIT BETA; COMPND 13 CHAIN: C, H; COMPND 14 SYNONYM: 2-OXOGLUTARATE OXIDOREDUCTASE SUBUNIT KORB,2-OXOGLUTARATE- COMPND 15 ACCEPTOR OXIDOREDUCTASE SUBUNIT OORB; COMPND 16 EC: 1.2.7.3; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: 2-OXOGLUTARATE:ACCEPTOR OXIDOREDUCTASE; COMPND 20 CHAIN: B, I; COMPND 21 SYNONYM: 2-OXOGLUTARATE OXIDOREDUCTASE OORC SUBUNIT; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: AM496_04450, BB411_07145, C2R64_04560, D8X81_03145, SOURCE 5 DD775_02535, EC515_04135, EC541_05865, EC589_03065, HPY1198_04840, SOURCE 6 HPY1846_01345; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 11 ORGANISM_TAXID: 210; SOURCE 12 GENE: C2R48_00275; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 17 ORGANISM_TAXID: 210; SOURCE 18 GENE: OORB, KORB, AM497_01150, AM498_01330, B0X30_00560, SOURCE 19 B0X44_00010, B0X50_03675, B0X54_05595, B0X62_02935, BB411_07135, SOURCE 20 BB413_05640, BB424_05915, BB459_03745, BB461_04720, BB464_04365, SOURCE 21 BB477_04855, BB479_06520, BGL55_07715, BGL66_00450, BGL68_05120, SOURCE 22 BGL69_01465, BGL72_06170, BXP09_03780, C2840_03070, C2R45_06185, SOURCE 23 C2R60_07105, C2R62_02105, C2R64_04570, C2R66_01600, C2R71_01550, SOURCE 24 C2R81_00990, C2R85_07970, C2R86_01670, C2R96_02100, C2S01_06600, SOURCE 25 C2S04_03540, C2S07_06030, C2S08_01675, C2S19_05560, C2S26_01775, SOURCE 26 C2S41_04370, C2S43_01830, C2S44_08445, CV723_03795, CV726_04550, SOURCE 27 CV728_03440, CV729_03960, CV730_03830, D2C73_05440, D2C76_08055, SOURCE 28 D2C79_04285, D2C84_02640, D2C85_05055, D2C87_02355, D8X56_03120, SOURCE 29 D8X81_03155, DD750_02510, DD754_03015, DD756_02785, DD764_03055, SOURCE 30 DD775_02545, DD794_03540, DDP37_03580, DDP42_03140, DDP57_02985, SOURCE 31 EC508_04845, EC515_04145, EC518_06710, EC525_03565, EC532_06000, SOURCE 32 EC533_02415, EC535_02670, EC538_03525, EC547_02955, EC551_04645, SOURCE 33 EC553_02910, EC556_02780, EC568_02905, EC569_04000, EC570_04715, SOURCE 34 EC572_05350, EC574_04050, EC582_05020, EC589_03055, EC595_02590, SOURCE 35 EC597_01970, EC598_00990, EC600_00880, EC601_02710, ECB88_05740, SOURCE 36 ECB91_01840, ECC09_04670, ECC11_04890, ECC12_01920, ECC19_03410, SOURCE 37 ECC24_01145, ECC25_02460, ECC26_02695, ECC33_03050, ECC34_02995, SOURCE 38 ECC35_03455, ECC43_04085, ECC49_04355, ECE46_02140, EDB75_01155, SOURCE 39 EDC85_02050, EGW01_04140, EPC67_05165, EPC72_01580, EPC80_01190, SOURCE 40 F7187_05770, F7198_05900, F7221_03625, F7229_07365, HPPMSS1_C00647, SOURCE 41 HPY1198_04850, NCTC12823_00718; SOURCE 42 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 43 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 44 MOL_ID: 4; SOURCE 45 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 46 ORGANISM_TAXID: 210; SOURCE 47 GENE: OORC, C2R64_04575, C2S01_06595, EC570_04720, ECC29_01410, SOURCE 48 ECC33_03045; SOURCE 49 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 50 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXOGLUTARATE OXIDOREDUCTASE, ELECTRON TRANSPORT, TRICARBOXYLIC ACID KEYWDS 2 CYCLE, OXIDOREDUCTASE EXPDTA ELECTRON MICROSCOPY AUTHOR W.LAN,Y.GAO,H.BI REVDAT 2 21-JAN-26 8YS5 1 JRNL REVDAT 1 02-JUL-25 8YS5 0 JRNL AUTH X.HANG,W.LAN,H.YANQIANG,H.HUANG,M.ZHANG,L.ZENG,T.SHI,Y.BAI, JRNL AUTH 2 Z.YANG,S.HU,J.WANG,L.DONG,Q.TONG,J.JIA,S.BI,Q.XIA,Y.GAO,H.BI JRNL TITL 2-OXOGLUTARATE:ACCEPTOR OXIDOREDUCTASE-CATALYZED REDOX JRNL TITL 2 CYCLING EFFECTIVELY TARGETS COCCOID FORMS OF HELICOBACTER JRNL TITL 3 PYLORI. JRNL REF NAT COMMUN V. 16 6965 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40730563 JRNL DOI 10.1038/S41467-025-62477-4 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.950 REMARK 3 NUMBER OF PARTICLES : 186894 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8YS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 28-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300046214. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HELICOBACTER PYLORI OORDABC REMARK 245 COMPLEX IN THE APO-FORM REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, C, B, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 LYS D 3 REMARK 465 MET D 4 REMARK 465 SER D 5 REMARK 465 GLY D 112 REMARK 465 LYS D 113 REMARK 465 LEU A 375 REMARK 465 ARG B 185 REMARK 465 ALA B 186 REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 LYS F 3 REMARK 465 MET F 4 REMARK 465 SER F 5 REMARK 465 GLY F 112 REMARK 465 LYS F 113 REMARK 465 LEU G 375 REMARK 465 ARG I 185 REMARK 465 ALA I 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG C 302 O3A TPP C 303 1.11 REMARK 500 N GLY H 96 O1A TPP H 303 2.00 REMARK 500 N CYS C 53 O2B TPP C 303 2.04 REMARK 500 N GLY C 127 O1B TPP C 303 2.11 REMARK 500 O LEU A 272 OH TYR A 327 2.13 REMARK 500 N GLY C 96 O2A TPP C 303 2.13 REMARK 500 O LEU G 272 OH TYR G 327 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 6 -169.76 -166.44 REMARK 500 SER A 32 34.45 -98.75 REMARK 500 PRO A 109 -149.58 -70.69 REMARK 500 THR A 111 -51.55 -26.78 REMARK 500 HIS A 127 72.91 -153.04 REMARK 500 ALA A 139 89.28 -154.50 REMARK 500 ASP A 200 -168.87 -78.75 REMARK 500 LYS A 201 -101.36 58.59 REMARK 500 TYR A 204 -12.48 64.00 REMARK 500 ASN A 336 -166.18 -162.25 REMARK 500 MET A 348 -9.51 70.45 REMARK 500 GLN A 357 117.48 -160.86 REMARK 500 SER A 364 80.02 55.60 REMARK 500 PRO A 365 -7.34 -51.30 REMARK 500 THR C 16 -174.66 -68.34 REMARK 500 TRP C 18 -76.87 -82.27 REMARK 500 CYS C 19 -75.46 -131.21 REMARK 500 TRP C 20 -25.56 -146.09 REMARK 500 PRO C 85 41.43 -81.73 REMARK 500 ASP C 97 -156.18 -78.89 REMARK 500 THR C 129 30.60 -92.70 REMARK 500 ASN C 130 62.86 60.73 REMARK 500 SER C 131 65.52 62.06 REMARK 500 PRO C 135 2.09 -69.81 REMARK 500 ILE B 60 -61.61 -100.93 REMARK 500 LEU B 182 52.00 -92.30 REMARK 500 SER F 55 31.44 -94.92 REMARK 500 PHE F 69 61.23 60.81 REMARK 500 SER G 6 -168.39 -161.93 REMARK 500 PRO G 109 -150.71 -70.67 REMARK 500 SER G 110 164.97 -49.38 REMARK 500 THR G 111 -51.72 -28.01 REMARK 500 ASP G 121 36.15 -99.59 REMARK 500 VAL G 122 -60.16 -96.79 REMARK 500 HIS G 127 75.54 -155.42 REMARK 500 ALA G 139 87.75 -157.68 REMARK 500 TYR G 204 -6.67 66.16 REMARK 500 LYS G 205 65.27 -159.16 REMARK 500 SER G 300 148.77 -173.45 REMARK 500 MET G 348 -3.72 62.76 REMARK 500 THR G 362 -167.78 -79.56 REMARK 500 SER G 364 79.85 55.41 REMARK 500 PRO G 365 -7.94 -51.25 REMARK 500 LEU H 17 19.28 -141.99 REMARK 500 TRP H 18 -74.79 -79.07 REMARK 500 CYS H 19 -74.51 -128.03 REMARK 500 TRP H 20 -26.78 -146.49 REMARK 500 PRO H 85 47.29 -77.84 REMARK 500 ASP H 97 -157.92 -78.95 REMARK 500 PHE H 124 -7.65 74.60 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 110 THR A 111 -133.12 REMARK 500 SER G 110 THR G 111 -135.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 19 SG REMARK 620 2 SF4 D 201 S2 126.8 REMARK 620 3 SF4 D 201 S3 98.3 104.0 REMARK 620 4 SF4 D 201 S4 116.3 104.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 201 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 22 SG REMARK 620 2 SF4 D 201 S1 103.2 REMARK 620 3 SF4 D 201 S2 120.2 104.2 REMARK 620 4 SF4 D 201 S3 119.0 104.1 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 25 SG REMARK 620 2 SF4 D 201 S1 112.2 REMARK 620 3 SF4 D 201 S3 113.6 104.0 REMARK 620 4 SF4 D 201 S4 117.4 104.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 202 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 29 SG REMARK 620 2 SF4 D 202 S1 118.8 REMARK 620 3 SF4 D 202 S2 108.9 104.2 REMARK 620 4 SF4 D 202 S4 115.2 104.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 202 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 56 SG REMARK 620 2 SF4 D 202 S1 127.6 REMARK 620 3 SF4 D 202 S3 101.9 104.1 REMARK 620 4 SF4 D 202 S4 112.4 104.1 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 202 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 59 O REMARK 620 2 SF4 D 202 S2 88.1 REMARK 620 3 SF4 D 202 S3 72.9 104.0 REMARK 620 4 SF4 D 202 S4 167.7 104.2 104.1 REMARK 620 5 CYS D 59 SG 72.5 109.3 130.3 102.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 202 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 62 SG REMARK 620 2 SF4 D 202 S1 123.5 REMARK 620 3 SF4 D 202 S2 109.1 104.2 REMARK 620 4 SF4 D 202 S3 110.2 104.0 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 201 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 66 SG REMARK 620 2 SF4 D 201 S1 108.8 REMARK 620 3 SF4 D 201 S2 107.3 104.3 REMARK 620 4 SF4 D 201 S4 126.4 104.0 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 C 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 19 SG REMARK 620 2 SF4 C 301 S2 117.3 REMARK 620 3 SF4 C 301 S3 110.3 104.2 REMARK 620 4 SF4 C 301 S4 115.5 104.0 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 C 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 22 SG REMARK 620 2 SF4 C 301 S1 112.2 REMARK 620 3 SF4 C 301 S3 116.2 104.2 REMARK 620 4 SF4 C 301 S4 114.7 104.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 C 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 53 SG REMARK 620 2 SF4 C 301 S1 110.3 REMARK 620 3 SF4 C 301 S2 124.3 104.2 REMARK 620 4 SF4 C 301 S4 108.1 104.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 95 OD1 REMARK 620 2 ASN C 123 OD1 60.6 REMARK 620 3 TPP C 303 O2A 66.0 120.1 REMARK 620 4 TPP C 303 O3B 145.7 92.9 146.3 REMARK 620 5 TPP C 303 O1B 152.4 110.5 104.1 53.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 C 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 202 SG REMARK 620 2 SF4 C 301 S1 109.4 REMARK 620 3 SF4 C 301 S2 117.9 104.2 REMARK 620 4 SF4 C 301 S3 115.6 104.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 F 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 19 SG REMARK 620 2 SF4 F 201 S2 123.9 REMARK 620 3 SF4 F 201 S3 106.6 104.1 REMARK 620 4 SF4 F 201 S4 112.2 104.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 F 201 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 22 SG REMARK 620 2 SF4 F 201 S1 107.8 REMARK 620 3 SF4 F 201 S2 116.0 104.2 REMARK 620 4 SF4 F 201 S3 119.1 104.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 F 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 25 SG REMARK 620 2 SF4 F 201 S1 117.6 REMARK 620 3 SF4 F 201 S3 110.7 104.1 REMARK 620 4 SF4 F 201 S4 114.7 104.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 F 202 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 29 SG REMARK 620 2 SF4 F 202 S1 117.1 REMARK 620 3 SF4 F 202 S2 102.1 104.2 REMARK 620 4 SF4 F 202 S4 123.0 104.1 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 F 202 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 56 SG REMARK 620 2 SF4 F 202 S1 123.3 REMARK 620 3 SF4 F 202 S3 102.5 104.0 REMARK 620 4 SF4 F 202 S4 116.5 104.1 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 F 202 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 59 SG REMARK 620 2 SF4 F 202 S2 101.3 REMARK 620 3 SF4 F 202 S3 133.3 104.0 REMARK 620 4 SF4 F 202 S4 106.8 104.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 F 202 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 62 SG REMARK 620 2 SF4 F 202 S1 112.8 REMARK 620 3 SF4 F 202 S2 69.7 104.3 REMARK 620 4 SF4 F 202 S3 143.2 104.0 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 F 201 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 66 SG REMARK 620 2 SF4 F 201 S1 107.9 REMARK 620 3 SF4 F 201 S2 114.6 104.2 REMARK 620 4 SF4 F 201 S4 120.3 104.1 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 H 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 19 SG REMARK 620 2 SF4 H 301 S2 120.6 REMARK 620 3 SF4 H 301 S3 110.2 104.2 REMARK 620 4 SF4 H 301 S4 112.2 104.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 H 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 22 SG REMARK 620 2 SF4 H 301 S1 109.7 REMARK 620 3 SF4 H 301 S3 118.0 104.2 REMARK 620 4 SF4 H 301 S4 115.3 104.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 H 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 53 SG REMARK 620 2 SF4 H 301 S1 107.6 REMARK 620 3 SF4 H 301 S2 127.8 104.1 REMARK 620 4 SF4 H 301 S4 106.8 104.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG H 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 95 OD1 REMARK 620 2 ASN H 123 OD1 85.0 REMARK 620 3 ASN H 123 ND2 129.3 52.7 REMARK 620 4 ILE H 125 O 102.1 75.8 93.8 REMARK 620 5 TPP H 303 O2B 167.5 107.5 61.3 82.5 REMARK 620 6 TPP H 303 O3A 108.5 166.5 115.3 101.0 59.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 H 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 202 SG REMARK 620 2 SF4 H 301 S1 109.0 REMARK 620 3 SF4 H 301 S2 122.5 104.2 REMARK 620 4 SF4 H 301 S3 111.2 104.2 104.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-39556 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE HELICOBACTER PYLORI OORDABC COMPLEX IN THE REMARK 900 APO-FORM DBREF1 8YS5 D 1 113 UNP A0A0B2EGL0_HELPX DBREF2 8YS5 D A0A0B2EGL0 1 113 DBREF1 8YS5 A 1 375 UNP A0A2T6W5S4_HELPX DBREF2 8YS5 A A0A2T6W5S4 1 375 DBREF1 8YS5 C 1 273 UNP A0A024BZG2_HELPX DBREF2 8YS5 C A0A024BZG2 1 273 DBREF1 8YS5 B 1 186 UNP A0A0B2EEZ8_HELPX DBREF2 8YS5 B A0A0B2EEZ8 1 186 DBREF1 8YS5 F 1 113 UNP A0A0B2EGL0_HELPX DBREF2 8YS5 F A0A0B2EGL0 1 113 DBREF1 8YS5 G 1 375 UNP A0A2T6W5S4_HELPX DBREF2 8YS5 G A0A2T6W5S4 1 375 DBREF1 8YS5 H 1 273 UNP A0A024BZG2_HELPX DBREF2 8YS5 H A0A024BZG2 1 273 DBREF1 8YS5 I 1 186 UNP A0A0B2EEZ8_HELPX DBREF2 8YS5 I A0A0B2EEZ8 1 186 SEQADV 8YS5 ARG C 250 UNP A0A024BZG LYS 250 CONFLICT SEQADV 8YS5 ARG H 250 UNP A0A024BZG LYS 250 CONFLICT SEQRES 1 D 113 MET ALA LYS MET SER THR PRO ASP GLY VAL ALA VAL TRP SEQRES 2 D 113 VAL ASN GLU ASP ARG CYS LYS GLY CYS ASP ILE CYS VAL SEQRES 3 D 113 SER VAL CYS PRO ALA GLY VAL LEU GLY MET GLY ILE GLU SEQRES 4 D 113 LYS GLU ARG VAL LEU GLY LYS VAL ALA LYS VAL ALA TYR SEQRES 5 D 113 PRO GLU SER CYS ILE GLY CYS VAL GLN CYS GLU LEU HIS SEQRES 6 D 113 CYS PRO ASP PHE ALA ILE TYR VAL ALA ASP ARG LYS ASP SEQRES 7 D 113 PHE LYS PHE ALA LYS VAL SER LYS GLU ALA GLN GLU ARG SEQRES 8 D 113 SER GLU LYS VAL LYS ALA ASN LYS TYR MET LEU LEU GLU SEQRES 9 D 113 GLU THR ILE LEU GLU GLY ARG GLY LYS SEQRES 1 A 375 MET ARG GLU ILE ILE SER ASP GLY ASN GLU LEU VAL ALA SEQRES 2 A 375 LYS ALA ALA ILE GLU VAL GLY CYS ARG PHE PHE GLY GLY SEQRES 3 A 375 TYR PRO ILE THR PRO SER SER ASP ILE MET HIS ALA MET SEQRES 4 A 375 SER VAL ALA LEU PRO LYS CYS GLY GLY HIS PHE ILE GLN SEQRES 5 A 375 MET GLU ASP GLU ILE SER GLY ILE SER VAL SER LEU GLY SEQRES 6 A 375 ALA SER MET SER GLY THR LYS SER MET THR ALA SER SER SEQRES 7 A 375 GLY PRO GLY ILE SER LEU LYS VAL GLU GLN ILE GLY TYR SEQRES 8 A 375 SER PHE MET ALA GLU ILE PRO LEU VAL ILE ALA ASP VAL SEQRES 9 A 375 MET ARG SER GLY PRO SER THR GLY MET PRO THR ARG VAL SEQRES 10 A 375 ALA GLN GLY ASP VAL ASN PHE LEU LYS HIS PRO ILE HIS SEQRES 11 A 375 GLY ASP PHE LYS ALA VAL ALA LEU ALA PRO ALA SER LEU SEQRES 12 A 375 GLU GLU ALA TYR THR GLU THR VAL ARG ALA PHE ASN LEU SEQRES 13 A 375 ALA GLU MET LEU MET THR PRO VAL PHE LEU LEU MET ASP SEQRES 14 A 375 GLU THR VAL GLY HIS MET TYR GLY LYS VAL GLN ILE PRO SEQRES 15 A 375 ASP LEU GLU GLU VAL GLN LYS MET THR ILE ASN ARG LYS SEQRES 16 A 375 GLU PHE VAL GLY ASP LYS LYS ASP TYR LYS PRO TYR GLY SEQRES 17 A 375 VAL ALA GLN ASP GLU PRO ALA VAL LEU ASN PRO PHE PHE SEQRES 18 A 375 LYS GLY TYR ARG TYR HIS VAL SER GLY LEU HIS HIS GLY SEQRES 19 A 375 PRO ILE GLY PHE PRO THR GLU ASP ALA LYS ILE GLY GLY SEQRES 20 A 375 ASP LEU ILE ASP ARG LEU PHE HIS LYS ILE GLU SER LYS SEQRES 21 A 375 GLN ASP ILE ILE ASN GLU ASN GLU GLU MET ASP LEU GLU SEQRES 22 A 375 GLY ALA GLU ILE VAL ILE ILE ALA TYR GLY SER VAL SER SEQRES 23 A 375 LEU ALA VAL LYS GLU ALA LEU LYS ASP TYR HIS LYS GLU SEQRES 24 A 375 SER LYS GLN LYS VAL GLY PHE PHE ARG PRO LYS THR LEU SEQRES 25 A 375 TRP PRO SER PRO ALA LYS ARG LEU LYS GLU ILE GLY ASP SEQRES 26 A 375 LYS TYR GLU LYS ILE LEU VAL ILE GLU LEU ASN LYS GLY SEQRES 27 A 375 GLN TYR LEU GLU GLU ILE GLU ARG ALA MET GLN ARG LYS SEQRES 28 A 375 VAL HIS PHE PHE GLY GLN ALA ASN GLY ARG THR ILE SER SEQRES 29 A 375 PRO LYS GLN ILE ILE ALA LYS LEU LYS GLU LEU SEQRES 1 C 273 MET ALA PHE ASN TYR ASP GLU TYR LEU ARG VAL ASP LYS SEQRES 2 C 273 ILE PRO THR LEU TRP CYS TRP GLY CYS GLY ASP GLY VAL SEQRES 3 C 273 ILE LEU LYS SER ILE ILE ARG THR ILE ASP ALA LEU GLY SEQRES 4 C 273 TRP LYS MET ASP ASP VAL CYS LEU VAL SER GLY ILE GLY SEQRES 5 C 273 CYS SER GLY ARG MET SER SER TYR VAL ASN CYS ASN THR SEQRES 6 C 273 VAL HIS THR THR HIS GLY ARG ALA VAL ALA TYR ALA THR SEQRES 7 C 273 GLY ILE LYS MET ALA ASN PRO SER LYS HIS VAL ILE VAL SEQRES 8 C 273 VAL SER GLY ASP GLY ASP GLY PHE ALA ILE GLY GLY ASN SEQRES 9 C 273 HIS THR MET HIS ALA CYS ARG ARG ASN ILE ASP LEU ASN SEQRES 10 C 273 PHE ILE LEU VAL ASN ASN PHE ILE TYR GLY LEU THR ASN SEQRES 11 C 273 SER GLN THR SER PRO THR THR PRO ASN GLY MET TRP THR SEQRES 12 C 273 VAL THR ALA GLN TRP GLY ASN ILE ASP ASN GLN PHE ASP SEQRES 13 C 273 PRO CYS ALA LEU THR THR ALA ALA GLY ALA SER PHE VAL SEQRES 14 C 273 ALA ARG GLU SER VAL LEU ASP PRO GLN LYS LEU GLU LYS SEQRES 15 C 273 VAL LEU LYS GLU GLY PHE SER HIS LYS GLY PHE SER PHE SEQRES 16 C 273 PHE ASP VAL HIS SER ASN CYS HIS ILE ASN LEU GLY ARG SEQRES 17 C 273 LYS ASN LYS MET GLY GLU ALA SER GLN MET LEU LYS TRP SEQRES 18 C 273 MET GLU SER ARG LEU VAL SER LYS ARG GLN PHE GLU ALA SEQRES 19 C 273 MET SER PRO GLU GLU ARG VAL ASP LYS PHE PRO THR GLY SEQRES 20 C 273 VAL LEU ARG HIS ASP THR ASP ARG LYS GLU TYR CYS GLU SEQRES 21 C 273 ALA TYR GLN GLU ILE ILE GLU LYS ALA GLN GLY LYS GLN SEQRES 1 B 186 MET GLU ALA GLN LEU ARG PHE THR GLY VAL GLY GLY GLN SEQRES 2 B 186 GLY VAL LEU LEU ALA GLY GLU ILE LEU ALA GLU ALA LYS SEQRES 3 B 186 ILE VAL SER GLY GLY TYR GLY THR LYS THR SER THR TYR SEQRES 4 B 186 THR SER GLN VAL ARG GLY GLY PRO THR LYS VAL ASP ILE SEQRES 5 B 186 LEU LEU ASP LYS ASP GLU ILE ILE PHE PRO TYR ALA LYS SEQRES 6 B 186 GLU GLY GLU ILE ASP PHE MET LEU SER VAL ALA GLN ILE SEQRES 7 B 186 SER TYR ASN GLN PHE LYS SER ASP ILE LYS GLN GLY GLY SEQRES 8 B 186 ILE VAL VAL ILE ASP PRO ASN LEU VAL THR PRO THR LYS SEQRES 9 B 186 GLU ASP GLU GLU LYS TYR GLN ILE TYR LYS ILE PRO ILE SEQRES 10 B 186 ILE SER ILE ALA LYS ASP GLU VAL GLY ASN ILE ILE THR SEQRES 11 B 186 GLN SER VAL VAL ALA LEU ALA ILE THR VAL GLU LEU THR SEQRES 12 B 186 LYS CYS VAL GLU GLU ASN ILE VAL LEU ASP THR MET LEU SEQRES 13 B 186 LYS LYS VAL PRO ALA LYS VAL ALA ASP THR ASN LYS LYS SEQRES 14 B 186 ALA PHE GLU ILE GLY LYS LYS HIS ALA LEU GLU ALA LEU SEQRES 15 B 186 LYS VAL ARG ALA SEQRES 1 F 113 MET ALA LYS MET SER THR PRO ASP GLY VAL ALA VAL TRP SEQRES 2 F 113 VAL ASN GLU ASP ARG CYS LYS GLY CYS ASP ILE CYS VAL SEQRES 3 F 113 SER VAL CYS PRO ALA GLY VAL LEU GLY MET GLY ILE GLU SEQRES 4 F 113 LYS GLU ARG VAL LEU GLY LYS VAL ALA LYS VAL ALA TYR SEQRES 5 F 113 PRO GLU SER CYS ILE GLY CYS VAL GLN CYS GLU LEU HIS SEQRES 6 F 113 CYS PRO ASP PHE ALA ILE TYR VAL ALA ASP ARG LYS ASP SEQRES 7 F 113 PHE LYS PHE ALA LYS VAL SER LYS GLU ALA GLN GLU ARG SEQRES 8 F 113 SER GLU LYS VAL LYS ALA ASN LYS TYR MET LEU LEU GLU SEQRES 9 F 113 GLU THR ILE LEU GLU GLY ARG GLY LYS SEQRES 1 G 375 MET ARG GLU ILE ILE SER ASP GLY ASN GLU LEU VAL ALA SEQRES 2 G 375 LYS ALA ALA ILE GLU VAL GLY CYS ARG PHE PHE GLY GLY SEQRES 3 G 375 TYR PRO ILE THR PRO SER SER ASP ILE MET HIS ALA MET SEQRES 4 G 375 SER VAL ALA LEU PRO LYS CYS GLY GLY HIS PHE ILE GLN SEQRES 5 G 375 MET GLU ASP GLU ILE SER GLY ILE SER VAL SER LEU GLY SEQRES 6 G 375 ALA SER MET SER GLY THR LYS SER MET THR ALA SER SER SEQRES 7 G 375 GLY PRO GLY ILE SER LEU LYS VAL GLU GLN ILE GLY TYR SEQRES 8 G 375 SER PHE MET ALA GLU ILE PRO LEU VAL ILE ALA ASP VAL SEQRES 9 G 375 MET ARG SER GLY PRO SER THR GLY MET PRO THR ARG VAL SEQRES 10 G 375 ALA GLN GLY ASP VAL ASN PHE LEU LYS HIS PRO ILE HIS SEQRES 11 G 375 GLY ASP PHE LYS ALA VAL ALA LEU ALA PRO ALA SER LEU SEQRES 12 G 375 GLU GLU ALA TYR THR GLU THR VAL ARG ALA PHE ASN LEU SEQRES 13 G 375 ALA GLU MET LEU MET THR PRO VAL PHE LEU LEU MET ASP SEQRES 14 G 375 GLU THR VAL GLY HIS MET TYR GLY LYS VAL GLN ILE PRO SEQRES 15 G 375 ASP LEU GLU GLU VAL GLN LYS MET THR ILE ASN ARG LYS SEQRES 16 G 375 GLU PHE VAL GLY ASP LYS LYS ASP TYR LYS PRO TYR GLY SEQRES 17 G 375 VAL ALA GLN ASP GLU PRO ALA VAL LEU ASN PRO PHE PHE SEQRES 18 G 375 LYS GLY TYR ARG TYR HIS VAL SER GLY LEU HIS HIS GLY SEQRES 19 G 375 PRO ILE GLY PHE PRO THR GLU ASP ALA LYS ILE GLY GLY SEQRES 20 G 375 ASP LEU ILE ASP ARG LEU PHE HIS LYS ILE GLU SER LYS SEQRES 21 G 375 GLN ASP ILE ILE ASN GLU ASN GLU GLU MET ASP LEU GLU SEQRES 22 G 375 GLY ALA GLU ILE VAL ILE ILE ALA TYR GLY SER VAL SER SEQRES 23 G 375 LEU ALA VAL LYS GLU ALA LEU LYS ASP TYR HIS LYS GLU SEQRES 24 G 375 SER LYS GLN LYS VAL GLY PHE PHE ARG PRO LYS THR LEU SEQRES 25 G 375 TRP PRO SER PRO ALA LYS ARG LEU LYS GLU ILE GLY ASP SEQRES 26 G 375 LYS TYR GLU LYS ILE LEU VAL ILE GLU LEU ASN LYS GLY SEQRES 27 G 375 GLN TYR LEU GLU GLU ILE GLU ARG ALA MET GLN ARG LYS SEQRES 28 G 375 VAL HIS PHE PHE GLY GLN ALA ASN GLY ARG THR ILE SER SEQRES 29 G 375 PRO LYS GLN ILE ILE ALA LYS LEU LYS GLU LEU SEQRES 1 H 273 MET ALA PHE ASN TYR ASP GLU TYR LEU ARG VAL ASP LYS SEQRES 2 H 273 ILE PRO THR LEU TRP CYS TRP GLY CYS GLY ASP GLY VAL SEQRES 3 H 273 ILE LEU LYS SER ILE ILE ARG THR ILE ASP ALA LEU GLY SEQRES 4 H 273 TRP LYS MET ASP ASP VAL CYS LEU VAL SER GLY ILE GLY SEQRES 5 H 273 CYS SER GLY ARG MET SER SER TYR VAL ASN CYS ASN THR SEQRES 6 H 273 VAL HIS THR THR HIS GLY ARG ALA VAL ALA TYR ALA THR SEQRES 7 H 273 GLY ILE LYS MET ALA ASN PRO SER LYS HIS VAL ILE VAL SEQRES 8 H 273 VAL SER GLY ASP GLY ASP GLY PHE ALA ILE GLY GLY ASN SEQRES 9 H 273 HIS THR MET HIS ALA CYS ARG ARG ASN ILE ASP LEU ASN SEQRES 10 H 273 PHE ILE LEU VAL ASN ASN PHE ILE TYR GLY LEU THR ASN SEQRES 11 H 273 SER GLN THR SER PRO THR THR PRO ASN GLY MET TRP THR SEQRES 12 H 273 VAL THR ALA GLN TRP GLY ASN ILE ASP ASN GLN PHE ASP SEQRES 13 H 273 PRO CYS ALA LEU THR THR ALA ALA GLY ALA SER PHE VAL SEQRES 14 H 273 ALA ARG GLU SER VAL LEU ASP PRO GLN LYS LEU GLU LYS SEQRES 15 H 273 VAL LEU LYS GLU GLY PHE SER HIS LYS GLY PHE SER PHE SEQRES 16 H 273 PHE ASP VAL HIS SER ASN CYS HIS ILE ASN LEU GLY ARG SEQRES 17 H 273 LYS ASN LYS MET GLY GLU ALA SER GLN MET LEU LYS TRP SEQRES 18 H 273 MET GLU SER ARG LEU VAL SER LYS ARG GLN PHE GLU ALA SEQRES 19 H 273 MET SER PRO GLU GLU ARG VAL ASP LYS PHE PRO THR GLY SEQRES 20 H 273 VAL LEU ARG HIS ASP THR ASP ARG LYS GLU TYR CYS GLU SEQRES 21 H 273 ALA TYR GLN GLU ILE ILE GLU LYS ALA GLN GLY LYS GLN SEQRES 1 I 186 MET GLU ALA GLN LEU ARG PHE THR GLY VAL GLY GLY GLN SEQRES 2 I 186 GLY VAL LEU LEU ALA GLY GLU ILE LEU ALA GLU ALA LYS SEQRES 3 I 186 ILE VAL SER GLY GLY TYR GLY THR LYS THR SER THR TYR SEQRES 4 I 186 THR SER GLN VAL ARG GLY GLY PRO THR LYS VAL ASP ILE SEQRES 5 I 186 LEU LEU ASP LYS ASP GLU ILE ILE PHE PRO TYR ALA LYS SEQRES 6 I 186 GLU GLY GLU ILE ASP PHE MET LEU SER VAL ALA GLN ILE SEQRES 7 I 186 SER TYR ASN GLN PHE LYS SER ASP ILE LYS GLN GLY GLY SEQRES 8 I 186 ILE VAL VAL ILE ASP PRO ASN LEU VAL THR PRO THR LYS SEQRES 9 I 186 GLU ASP GLU GLU LYS TYR GLN ILE TYR LYS ILE PRO ILE SEQRES 10 I 186 ILE SER ILE ALA LYS ASP GLU VAL GLY ASN ILE ILE THR SEQRES 11 I 186 GLN SER VAL VAL ALA LEU ALA ILE THR VAL GLU LEU THR SEQRES 12 I 186 LYS CYS VAL GLU GLU ASN ILE VAL LEU ASP THR MET LEU SEQRES 13 I 186 LYS LYS VAL PRO ALA LYS VAL ALA ASP THR ASN LYS LYS SEQRES 14 I 186 ALA PHE GLU ILE GLY LYS LYS HIS ALA LEU GLU ALA LEU SEQRES 15 I 186 LYS VAL ARG ALA HET SF4 D 201 8 HET SF4 D 202 8 HET SF4 C 301 8 HET MG C 302 1 HET TPP C 303 26 HET SF4 F 201 8 HET SF4 F 202 8 HET SF4 H 301 8 HET MG H 302 1 HET TPP H 303 26 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM MG MAGNESIUM ION HETNAM TPP THIAMINE DIPHOSPHATE FORMUL 9 SF4 6(FE4 S4) FORMUL 12 MG 2(MG 2+) FORMUL 13 TPP 2(C12 H19 N4 O7 P2 S 1+) HELIX 1 AA1 ASP D 23 VAL D 28 1 6 HELIX 2 AA2 TYR D 52 CYS D 56 5 5 HELIX 3 AA3 VAL D 60 CYS D 66 1 7 HELIX 4 AA4 SER D 85 ALA D 97 1 13 HELIX 5 AA5 LEU D 103 GLU D 109 5 7 HELIX 6 AA6 GLY A 8 GLY A 20 1 13 HELIX 7 AA7 SER A 33 LEU A 43 1 11 HELIX 8 AA8 PRO A 44 GLY A 47 5 4 HELIX 9 AA9 ASP A 55 SER A 69 1 15 HELIX 10 AB1 GLY A 79 ALA A 95 1 17 HELIX 11 AB2 VAL A 122 HIS A 127 1 6 HELIX 12 AB3 GLU A 144 MET A 161 1 18 HELIX 13 AB4 ASP A 169 MET A 175 1 7 HELIX 14 AB5 ASP A 183 THR A 191 1 9 HELIX 15 AB6 ASP A 242 SER A 259 1 18 HELIX 16 AB7 LYS A 260 ASN A 265 1 6 HELIX 17 AB8 SER A 284 TYR A 296 1 13 HELIX 18 AB9 PRO A 316 TYR A 327 1 12 HELIX 19 AC1 TYR A 340 ALA A 347 1 8 HELIX 20 AC2 MET A 348 ARG A 350 5 3 HELIX 21 AC3 PRO A 365 GLU A 374 1 10 HELIX 22 AC4 ASP C 24 LEU C 38 1 15 HELIX 23 AC5 LYS C 41 ASP C 43 5 3 HELIX 24 AC6 SER C 54 TYR C 60 5 7 HELIX 25 AC7 ARG C 72 ASN C 84 1 13 HELIX 26 AC8 GLY C 102 ASN C 113 1 12 HELIX 27 AC9 ASP C 156 GLY C 165 1 10 HELIX 28 AD1 ASP C 176 SER C 189 1 14 HELIX 29 AD2 LEU C 206 LYS C 211 5 6 HELIX 30 AD3 GLU C 214 ARG C 225 1 12 HELIX 31 AD4 SER C 228 ALA C 234 1 7 HELIX 32 AD5 SER C 236 ARG C 240 5 5 HELIX 33 AD6 GLU C 257 GLN C 270 1 14 HELIX 34 AD7 GLY B 14 LEU B 16 5 3 HELIX 35 AD8 LEU B 17 GLY B 30 1 14 HELIX 36 AD9 ALA B 76 PHE B 83 1 8 HELIX 37 AE1 THR B 103 TYR B 110 1 8 HELIX 38 AE2 PRO B 116 GLU B 124 1 9 HELIX 39 AE3 THR B 130 LYS B 144 1 15 HELIX 40 AE4 GLU B 147 LYS B 157 1 11 HELIX 41 AE5 LYS B 158 VAL B 159 5 2 HELIX 42 AE6 PRO B 160 LYS B 162 5 3 HELIX 43 AE7 VAL B 163 ALA B 181 1 19 HELIX 44 AE8 ILE F 24 VAL F 28 5 5 HELIX 45 AE9 TYR F 52 CYS F 56 5 5 HELIX 46 AF1 VAL F 60 HIS F 65 1 6 HELIX 47 AF2 SER F 85 ALA F 97 1 13 HELIX 48 AF3 LEU F 103 GLU F 109 5 7 HELIX 49 AF4 GLY G 8 GLY G 20 1 13 HELIX 50 AF5 SER G 32 CYS G 46 1 15 HELIX 51 AF6 ASP G 55 SER G 69 1 15 HELIX 52 AF7 GLY G 79 LEU G 84 1 6 HELIX 53 AF8 LYS G 85 ALA G 95 1 11 HELIX 54 AF9 VAL G 122 HIS G 127 1 6 HELIX 55 AG1 GLU G 144 MET G 161 1 18 HELIX 56 AG2 ASP G 169 MET G 175 1 7 HELIX 57 AG3 ASP G 183 MET G 190 1 8 HELIX 58 AG4 ASP G 242 SER G 259 1 18 HELIX 59 AG5 LYS G 260 ASN G 265 1 6 HELIX 60 AG6 SER G 284 HIS G 297 1 14 HELIX 61 AG7 PRO G 316 TYR G 327 1 12 HELIX 62 AG8 TYR G 340 ALA G 347 1 8 HELIX 63 AG9 MET G 348 ARG G 350 5 3 HELIX 64 AH1 PRO G 365 GLU G 374 1 10 HELIX 65 AH2 ASP H 24 LEU H 38 1 15 HELIX 66 AH3 LYS H 41 ASP H 43 5 3 HELIX 67 AH4 SER H 54 TYR H 60 5 7 HELIX 68 AH5 ARG H 72 ASN H 84 1 13 HELIX 69 AH6 GLY H 102 ASN H 113 1 12 HELIX 70 AH7 ASP H 156 GLY H 165 1 10 HELIX 71 AH8 ASP H 176 SER H 189 1 14 HELIX 72 AH9 GLU H 214 LEU H 226 1 13 HELIX 73 AI1 SER H 228 ALA H 234 1 7 HELIX 74 AI2 GLU H 257 GLN H 270 1 14 HELIX 75 AI3 GLY I 14 LEU I 17 5 4 HELIX 76 AI4 ALA I 18 GLY I 30 1 13 HELIX 77 AI5 ALA I 76 ASN I 81 1 6 HELIX 78 AI6 THR I 103 TYR I 110 1 8 HELIX 79 AI7 PRO I 116 GLU I 124 1 9 HELIX 80 AI8 THR I 130 LYS I 144 1 15 HELIX 81 AI9 GLU I 147 LYS I 157 1 11 HELIX 82 AJ1 PRO I 160 LEU I 182 1 23 SHEET 1 AA1 2 VAL D 12 VAL D 14 0 SHEET 2 AA1 2 ILE D 71 VAL D 73 -1 O TYR D 72 N TRP D 13 SHEET 1 AA2 2 LEU D 34 ILE D 38 0 SHEET 2 AA2 2 LYS D 46 VAL D 50 -1 O VAL D 47 N GLY D 37 SHEET 1 AA3 2 GLU A 3 ASP A 7 0 SHEET 2 AA3 2 TYR A 176 GLN A 180 -1 O VAL A 179 N ILE A 4 SHEET 1 AA4 2 PHE A 23 GLY A 26 0 SHEET 2 AA4 2 HIS A 49 GLN A 52 1 O HIS A 49 N PHE A 24 SHEET 1 AA5 5 THR A 75 SER A 77 0 SHEET 2 AA5 5 LEU A 99 ASP A 103 1 O ALA A 102 N THR A 75 SHEET 3 AA5 5 PRO A 163 LEU A 166 1 O LEU A 166 N ASP A 103 SHEET 4 AA5 5 ALA A 137 LEU A 138 1 N LEU A 138 O PHE A 165 SHEET 5 AA5 5 THR A 311 TRP A 313 -1 O TRP A 313 N ALA A 137 SHEET 1 AA6 8 HIS A 227 VAL A 228 0 SHEET 2 AA6 8 ASN H 64 HIS H 67 1 O HIS H 67 N VAL A 228 SHEET 3 AA6 8 VAL H 45 SER H 49 1 N SER H 49 O VAL H 66 SHEET 4 AA6 8 HIS H 88 GLY H 94 1 O ILE H 90 N CYS H 46 SHEET 5 AA6 8 ASN H 117 ASN H 122 1 O ILE H 119 N SER H 93 SHEET 6 AA6 8 SER H 194 HIS H 199 1 O VAL H 198 N ASN H 122 SHEET 7 AA6 8 PHE H 168 SER H 173 1 N GLU H 172 O ASP H 197 SHEET 8 AA6 8 GLY H 247 ARG H 250 -1 O GLY H 247 N ARG H 171 SHEET 1 AA7 5 ASN A 267 MET A 270 0 SHEET 2 AA7 5 VAL A 304 PRO A 309 -1 O ARG A 308 N GLU A 268 SHEET 3 AA7 5 ILE A 277 VAL A 278 1 N ILE A 277 O GLY A 305 SHEET 4 AA7 5 LYS A 329 ILE A 333 1 O LEU A 331 N VAL A 278 SHEET 5 AA7 5 HIS A 353 PHE A 355 1 O HIS A 353 N ILE A 330 SHEET 1 AA8 8 GLY C 247 HIS C 251 0 SHEET 2 AA8 8 PHE C 168 SER C 173 -1 N VAL C 169 O ARG C 250 SHEET 3 AA8 8 SER C 194 HIS C 199 1 O PHE C 195 N PHE C 168 SHEET 4 AA8 8 PHE C 118 ASN C 122 1 N ASN C 122 O VAL C 198 SHEET 5 AA8 8 HIS C 88 GLY C 94 1 N SER C 93 O ILE C 119 SHEET 6 AA8 8 VAL C 45 SER C 49 1 N CYS C 46 O ILE C 90 SHEET 7 AA8 8 ASN C 64 HIS C 67 1 O VAL C 66 N SER C 49 SHEET 8 AA8 8 HIS G 227 VAL G 228 1 O VAL G 228 N HIS C 67 SHEET 1 AA9 2 ILE C 125 TYR C 126 0 SHEET 2 AA9 2 GLN C 132 THR C 133 -1 O GLN C 132 N TYR C 126 SHEET 1 AB1 2 LEU C 226 VAL C 227 0 SHEET 2 AB1 2 PHE C 244 PRO C 245 1 O PHE C 244 N VAL C 227 SHEET 1 AB2 6 TYR B 32 THR B 38 0 SHEET 2 AB2 6 PRO B 47 ASP B 55 -1 O ASP B 51 N THR B 36 SHEET 3 AB2 6 ALA B 3 VAL B 10 -1 N GLY B 9 O THR B 48 SHEET 4 AB2 6 ILE B 69 SER B 74 1 O LEU B 73 N THR B 8 SHEET 5 AB2 6 ILE B 87 ILE B 95 1 O VAL B 94 N SER B 74 SHEET 6 AB2 6 TYR B 113 LYS B 114 1 O TYR B 113 N ILE B 95 SHEET 1 AB3 2 VAL F 12 VAL F 14 0 SHEET 2 AB3 2 ILE F 71 VAL F 73 -1 O TYR F 72 N TRP F 13 SHEET 1 AB4 2 LEU F 34 ILE F 38 0 SHEET 2 AB4 2 LYS F 46 VAL F 50 -1 O VAL F 47 N GLY F 37 SHEET 1 AB5 2 ARG G 2 ASP G 7 0 SHEET 2 AB5 2 TYR G 176 ILE G 181 -1 O ILE G 181 N ARG G 2 SHEET 1 AB6 7 HIS G 49 ILE G 51 0 SHEET 2 AB6 7 PHE G 23 GLY G 25 1 N PHE G 24 O ILE G 51 SHEET 3 AB6 7 SER G 73 SER G 77 1 O MET G 74 N PHE G 23 SHEET 4 AB6 7 LEU G 99 ASP G 103 1 O VAL G 100 N THR G 75 SHEET 5 AB6 7 PRO G 163 LEU G 166 1 O LEU G 166 N ASP G 103 SHEET 6 AB6 7 ALA G 137 LEU G 138 1 N LEU G 138 O PHE G 165 SHEET 7 AB6 7 THR G 311 TRP G 313 -1 O TRP G 313 N ALA G 137 SHEET 1 AB7 5 ASN G 267 MET G 270 0 SHEET 2 AB7 5 VAL G 304 PRO G 309 -1 O ARG G 308 N GLU G 268 SHEET 3 AB7 5 ILE G 277 VAL G 278 1 N ILE G 277 O GLY G 305 SHEET 4 AB7 5 LYS G 329 ILE G 333 1 O LYS G 329 N VAL G 278 SHEET 5 AB7 5 HIS G 353 PHE G 355 1 O HIS G 353 N VAL G 332 SHEET 1 AB8 6 TYR I 32 THR I 38 0 SHEET 2 AB8 6 PRO I 47 ASP I 55 -1 O ASP I 55 N TYR I 32 SHEET 3 AB8 6 ALA I 3 VAL I 10 -1 N GLY I 9 O THR I 48 SHEET 4 AB8 6 ILE I 69 SER I 74 1 O PHE I 71 N GLN I 4 SHEET 5 AB8 6 ILE I 87 ILE I 95 1 O VAL I 94 N SER I 74 SHEET 6 AB8 6 TYR I 113 LYS I 114 1 O TYR I 113 N VAL I 93 LINK SG CYS D 19 FE1 SF4 D 201 1555 1555 2.27 LINK SG CYS D 22 FE4 SF4 D 201 1555 1555 2.26 LINK SG CYS D 25 FE2 SF4 D 201 1555 1555 2.27 LINK SG CYS D 29 FE3 SF4 D 202 1555 1555 2.26 LINK SG CYS D 56 FE2 SF4 D 202 1555 1555 2.27 LINK O CYS D 59 FE1 SF4 D 202 1555 1555 2.76 LINK SG CYS D 59 FE1 SF4 D 202 1555 1555 2.27 LINK SG CYS D 62 FE4 SF4 D 202 1555 1555 2.27 LINK SG CYS D 66 FE3 SF4 D 201 1555 1555 2.27 LINK SG CYS C 19 FE1 SF4 C 301 1555 1555 2.27 LINK SG CYS C 22 FE2 SF4 C 301 1555 1555 2.27 LINK SG CYS C 53 FE3 SF4 C 301 1555 1555 2.26 LINK OD1 ASP C 95 MG MG C 302 1555 1555 2.72 LINK OD1 ASN C 123 MG MG C 302 1555 1555 2.85 LINK SG CYS C 202 FE4 SF4 C 301 1555 1555 2.26 LINK MG MG C 302 O2A TPP C 303 1555 1555 2.68 LINK MG MG C 302 O3B TPP C 303 1555 1555 2.64 LINK MG MG C 302 O1B TPP C 303 1555 1555 2.83 LINK SG CYS F 19 FE1 SF4 F 201 1555 1555 2.27 LINK SG CYS F 22 FE4 SF4 F 201 1555 1555 2.26 LINK SG CYS F 25 FE2 SF4 F 201 1555 1555 2.26 LINK SG CYS F 29 FE3 SF4 F 202 1555 1555 2.27 LINK SG CYS F 56 FE2 SF4 F 202 1555 1555 2.27 LINK SG CYS F 59 FE1 SF4 F 202 1555 1555 2.27 LINK SG CYS F 62 FE4 SF4 F 202 1555 1555 2.26 LINK SG CYS F 66 FE3 SF4 F 201 1555 1555 2.27 LINK SG CYS H 19 FE1 SF4 H 301 1555 1555 2.27 LINK SG CYS H 22 FE2 SF4 H 301 1555 1555 2.26 LINK SG CYS H 53 FE3 SF4 H 301 1555 1555 2.27 LINK OD1 ASP H 95 MG MG H 302 1555 1555 2.03 LINK OD1 ASN H 123 MG MG H 302 1555 1555 2.02 LINK ND2 ASN H 123 MG MG H 302 1555 1555 2.79 LINK O ILE H 125 MG MG H 302 1555 1555 2.65 LINK SG CYS H 202 FE4 SF4 H 301 1555 1555 2.27 LINK MG MG H 302 O2B TPP H 303 1555 1555 2.94 LINK MG MG H 302 O3A TPP H 303 1555 1555 1.88 CISPEP 1 THR A 30 PRO A 31 0 0.11 CISPEP 2 GLY A 108 PRO A 109 0 0.53 CISPEP 3 TRP A 313 PRO A 314 0 -2.01 CISPEP 4 ILE C 14 PRO C 15 0 7.86 CISPEP 5 THR G 30 PRO G 31 0 -1.53 CISPEP 6 GLY G 108 PRO G 109 0 1.13 CISPEP 7 TRP G 313 PRO G 314 0 -1.89 CISPEP 8 ILE H 14 PRO H 15 0 5.94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 10814525 CONECT 12714528 CONECT 14914526 CONECT 17514535 CONECT 36914534 CONECT 38514533 CONECT 38714533 CONECT 40914536 CONECT 44214527 CONECT 388914541 CONECT 391314542 CONECT 413714543 CONECT 444314549 CONECT 465714549 CONECT 526814544 CONECT 737014576 CONECT 738914579 CONECT 741114577 CONECT 743714586 CONECT 763114585 CONECT 764914584 CONECT 767114587 CONECT 770414578 CONECT1115114592 CONECT1117514593 CONECT1139914594 CONECT1170514600 CONECT1191914600 CONECT1192014600 CONECT1193514600 CONECT1253014595 CONECT14525 108145301453114532 CONECT14526 149145291453114532 CONECT14527 442145291453014532 CONECT14528 127145291453014531 CONECT14529145261452714528 CONECT14530145251452714528 CONECT14531145251452614528 CONECT14532145251452614527 CONECT14533 385 3871453814539 CONECT1453314540 CONECT14534 369145371453914540 CONECT14535 175145371453814540 CONECT14536 409145371453814539 CONECT14537145341453514536 CONECT14538145331453514536 CONECT14539145331453414536 CONECT14540145331453414535 CONECT14541 3889145461454714548 CONECT14542 3913145451454714548 CONECT14543 4137145451454614548 CONECT14544 5268145451454614547 CONECT14545145421454314544 CONECT14546145411454314544 CONECT14547145411454214544 CONECT14548145411454214543 CONECT14549 4443 46571457014573 CONECT1454914575 CONECT145501455114557 CONECT14551145501455214553 CONECT1455214551 CONECT145531455114554 CONECT14554145531455514556 CONECT1455514554 CONECT14556145541455714558 CONECT145571455014556 CONECT145581455614559 CONECT14559145581456014563 CONECT145601455914561 CONECT145611456014562 CONECT14562145611456314565 CONECT14563145591456214564 CONECT1456414563 CONECT145651456214566 CONECT145661456514567 CONECT145671456614568 CONECT1456814567145691457014571 CONECT1456914568 CONECT145701454914568 CONECT145711456814572 CONECT1457214571145731457414575 CONECT145731454914572 CONECT1457414572 CONECT145751454914572 CONECT14576 7370145811458214583 CONECT14577 7411145801458214583 CONECT14578 7704145801458114583 CONECT14579 7389145801458114582 CONECT14580145771457814579 CONECT14581145761457814579 CONECT14582145761457714579 CONECT14583145761457714578 CONECT14584 7649145891459014591 CONECT14585 7631145881459014591 CONECT14586 7437145881458914591 CONECT14587 7671145881458914590 CONECT14588145851458614587 CONECT14589145841458614587 CONECT14590145841458514587 CONECT14591145841458514586 CONECT1459211151145971459814599 CONECT1459311175145961459814599 CONECT1459411399145961459714599 CONECT1459512530145961459714598 CONECT14596145931459414595 CONECT14597145921459414595 CONECT14598145921459314595 CONECT14599145921459314594 CONECT1460011705119191192011935 CONECT146001462214625 CONECT146011460214608 CONECT14602146011460314604 CONECT1460314602 CONECT146041460214605 CONECT14605146041460614607 CONECT1460614605 CONECT14607146051460814609 CONECT146081460114607 CONECT146091460714610 CONECT14610146091461114614 CONECT146111461014612 CONECT146121461114613 CONECT14613146121461414616 CONECT14614146101461314615 CONECT1461514614 CONECT146161461314617 CONECT146171461614618 CONECT146181461714619 CONECT1461914618146201462114622 CONECT1462014619 CONECT1462114619 CONECT14622146001461914623 CONECT1462314622146241462514626 CONECT1462414623 CONECT146251460014623 CONECT1462614623 MASTER 466 0 10 82 68 0 0 614618 8 136 148 END