HEADER IMMUNE SYSTEM 23-MAR-24 8YSQ TITLE CRYSTAL STRUCTURE OF SAVED DOMAIN OF CAP5 FROM DEINOCOCCUS TITLE 2 WULUMUQIENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAVED DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CD-NTASE-ASSOCIATED PROTEIN 5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS WULUMUQIENSIS; SOURCE 3 ORGANISM_TAXID: 980427; SOURCE 4 GENE: DVJ83_15715; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CD-NTASE-ASSOCIATED PROTEIN 5, SAVED, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.WANG,C.-S.YANG,M.-H.HOU,Y.CHEN REVDAT 1 29-JAN-25 8YSQ 0 JRNL AUTH C.S.YANG,M.Y.SHIE,S.W.HUANG,Y.C.WANG,M.H.HOU,C.J.CHEN,Y.CHEN JRNL TITL STRUCTURAL INSIGHTS INTO SIGNALING PROMISCUITY OF THE CBASS JRNL TITL 2 ANTI-PHAGE DEFENSE SYSTEM FROM A RADIATION-RESISTANT JRNL TITL 3 BACTERIUM. JRNL REF INT.J.BIOL.MACROMOL. V. 295 39534 2025 JRNL REFN ISSN 0141-8130 JRNL PMID 39761885 JRNL DOI 10.1016/J.IJBIOMAC.2025.139534 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 23371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9800 - 3.5200 0.92 2686 142 0.1607 0.1715 REMARK 3 2 3.5200 - 2.8000 0.93 2711 143 0.1761 0.2365 REMARK 3 3 2.8000 - 2.4400 0.96 2782 146 0.1884 0.2558 REMARK 3 4 2.4400 - 2.2200 0.97 2842 149 0.1826 0.2358 REMARK 3 5 2.2200 - 2.0600 0.98 2874 152 0.1789 0.2094 REMARK 3 6 2.0600 - 1.9400 0.98 2868 151 0.1898 0.2571 REMARK 3 7 1.9400 - 1.8400 0.98 2850 149 0.2132 0.2781 REMARK 3 8 1.8400 - 1.7600 0.89 2589 137 0.2157 0.3367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.216 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2107 REMARK 3 ANGLE : 0.785 2864 REMARK 3 CHIRALITY : 0.050 326 REMARK 3 PLANARITY : 0.007 371 REMARK 3 DIHEDRAL : 12.367 801 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2841 8.2904 -9.1185 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.1989 REMARK 3 T33: 0.0540 T12: -0.0179 REMARK 3 T13: 0.0885 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 0.4886 L22: 1.0647 REMARK 3 L33: 0.8643 L12: 0.5426 REMARK 3 L13: 0.1050 L23: 0.3454 REMARK 3 S TENSOR REMARK 3 S11: -0.4395 S12: 0.0827 S13: 0.1680 REMARK 3 S21: -0.8072 S22: -0.0260 S23: 0.1846 REMARK 3 S31: -0.2019 S32: 0.2496 S33: -0.4393 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0700 11.2958 -10.4096 REMARK 3 T TENSOR REMARK 3 T11: 0.1916 T22: 0.2599 REMARK 3 T33: 0.1028 T12: -0.0493 REMARK 3 T13: -0.0268 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.0932 L22: 0.8569 REMARK 3 L33: 0.2866 L12: 0.0712 REMARK 3 L13: 0.0530 L23: 0.1961 REMARK 3 S TENSOR REMARK 3 S11: -0.2628 S12: 0.1916 S13: 0.1861 REMARK 3 S21: -0.9559 S22: 0.1377 S23: -0.3451 REMARK 3 S31: -0.2742 S32: 0.1799 S33: 0.0574 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5408 10.0971 5.5516 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.1371 REMARK 3 T33: 0.1528 T12: -0.0072 REMARK 3 T13: -0.0126 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.0570 L22: 0.0888 REMARK 3 L33: 0.0160 L12: 0.0288 REMARK 3 L13: 0.0328 L23: 0.0355 REMARK 3 S TENSOR REMARK 3 S11: -0.0719 S12: -0.0474 S13: 0.0454 REMARK 3 S21: 0.0375 S22: 0.0220 S23: -0.0679 REMARK 3 S31: -0.1090 S32: 0.0680 S33: -0.0437 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8134 11.6160 -1.6648 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.0955 REMARK 3 T33: 0.1961 T12: -0.0029 REMARK 3 T13: -0.0495 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.1569 L22: 0.0940 REMARK 3 L33: 0.4838 L12: 0.1420 REMARK 3 L13: -0.0634 L23: -0.0317 REMARK 3 S TENSOR REMARK 3 S11: -0.0832 S12: -0.0265 S13: 0.1950 REMARK 3 S21: -0.1042 S22: -0.0894 S23: 0.1504 REMARK 3 S31: -0.0827 S32: 0.1075 S33: -0.2646 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8004 1.8787 -9.9578 REMARK 3 T TENSOR REMARK 3 T11: 0.1605 T22: 0.1262 REMARK 3 T33: 0.1213 T12: -0.0063 REMARK 3 T13: -0.0411 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.0307 L22: 0.6238 REMARK 3 L33: 0.0881 L12: 0.0392 REMARK 3 L13: 0.0167 L23: -0.1990 REMARK 3 S TENSOR REMARK 3 S11: -0.1158 S12: 0.0206 S13: 0.2149 REMARK 3 S21: -0.6519 S22: -0.0021 S23: 0.1905 REMARK 3 S31: 0.2535 S32: -0.0119 S33: -0.0597 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0331 -12.6728 -2.2412 REMARK 3 T TENSOR REMARK 3 T11: 0.2703 T22: 0.0671 REMARK 3 T33: 0.0265 T12: -0.0296 REMARK 3 T13: -0.0454 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.3932 L22: 0.1956 REMARK 3 L33: 0.2083 L12: 0.0738 REMARK 3 L13: -0.0051 L23: 0.0894 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.1715 S13: -0.3074 REMARK 3 S21: -0.1392 S22: 0.0312 S23: 0.5888 REMARK 3 S31: 0.1416 S32: 0.1497 S33: -0.0296 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 288 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1738 -11.9005 2.8108 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.0958 REMARK 3 T33: 0.0864 T12: 0.0187 REMARK 3 T13: -0.0048 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3053 L22: 0.9900 REMARK 3 L33: 0.2384 L12: 0.4133 REMARK 3 L13: -0.0012 L23: 0.0995 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0806 S13: -0.0684 REMARK 3 S21: -0.0556 S22: -0.0040 S23: 0.1834 REMARK 3 S31: 0.0894 S32: 0.0089 S33: -0.0060 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 351 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9813 -5.4518 7.9339 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.0946 REMARK 3 T33: 0.1165 T12: -0.0026 REMARK 3 T13: 0.0550 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.0769 L22: 0.2260 REMARK 3 L33: 0.1894 L12: 0.0116 REMARK 3 L13: 0.0358 L23: 0.0408 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: -0.0865 S13: -0.0758 REMARK 3 S21: -0.0190 S22: -0.0103 S23: 0.3871 REMARK 3 S31: 0.1270 S32: 0.1193 S33: -0.0217 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9364 -3.3859 10.8436 REMARK 3 T TENSOR REMARK 3 T11: 0.0826 T22: 0.1220 REMARK 3 T33: 0.1153 T12: 0.0158 REMARK 3 T13: 0.0644 T23: -0.0751 REMARK 3 L TENSOR REMARK 3 L11: 0.0431 L22: 0.3685 REMARK 3 L33: 0.3616 L12: 0.1058 REMARK 3 L13: 0.0199 L23: -0.2503 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: 0.0697 S13: -0.1814 REMARK 3 S21: 0.7898 S22: -0.4988 S23: 0.0522 REMARK 3 S31: -0.2803 S32: 0.4373 S33: -0.2019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300046310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 07A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.2060 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 13.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 28 % W/V PEG REMARK 280 2000 MME., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 THR A 12 REMARK 465 VAL A 13 REMARK 465 GLN A 14 REMARK 465 GLN A 15 REMARK 465 THR A 16 REMARK 465 LYS A 17 REMARK 465 ALA A 18 REMARK 465 LYS A 19 REMARK 465 TYR A 20 REMARK 465 THR A 21 REMARK 465 LYS A 22 REMARK 465 LEU A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 ILE A 28 REMARK 465 PRO A 29 REMARK 465 GLU A 30 REMARK 465 GLN A 31 REMARK 465 THR A 32 REMARK 465 LYS A 33 REMARK 465 ARG A 34 REMARK 465 GLU A 35 REMARK 465 LEU A 36 REMARK 465 TRP A 37 REMARK 465 ALA A 38 REMARK 465 ARG A 39 REMARK 465 ALA A 40 REMARK 465 ALA A 41 REMARK 465 GLY A 42 REMARK 465 ARG A 43 REMARK 465 CYS A 44 REMARK 465 GLN A 45 REMARK 465 PHE A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 CYS A 49 REMARK 465 ASN A 50 REMARK 465 LYS A 51 REMARK 465 LEU A 52 REMARK 465 LEU A 53 REMARK 465 TYR A 54 REMARK 465 ARG A 55 REMARK 465 ASP A 56 REMARK 465 GLU A 57 REMARK 465 VAL A 58 REMARK 465 ALA A 59 REMARK 465 LYS A 60 REMARK 465 GLU A 61 REMARK 465 ALA A 62 REMARK 465 HIS A 63 REMARK 465 ASN A 64 REMARK 465 GLY A 65 REMARK 465 ALA A 66 REMARK 465 THR A 67 REMARK 465 ILE A 68 REMARK 465 ALA A 69 REMARK 465 HIS A 70 REMARK 465 ILE A 71 REMARK 465 VAL A 72 REMARK 465 ALA A 73 REMARK 465 TYR A 74 REMARK 465 SER A 75 REMARK 465 PRO A 76 REMARK 465 ASP A 77 REMARK 465 GLY A 78 REMARK 465 PRO A 79 REMARK 465 ARG A 80 REMARK 465 GLY A 81 REMARK 465 ASP A 82 REMARK 465 THR A 83 REMARK 465 THR A 84 REMARK 465 ARG A 85 REMARK 465 SER A 86 REMARK 465 GLU A 87 REMARK 465 LYS A 88 REMARK 465 LEU A 89 REMARK 465 GLU A 90 REMARK 465 LYS A 91 REMARK 465 ASP A 92 REMARK 465 ILE A 93 REMARK 465 SER A 94 REMARK 465 ASN A 95 REMARK 465 LEU A 96 REMARK 465 MET A 97 REMARK 465 LEU A 98 REMARK 465 THR A 99 REMARK 465 CYS A 100 REMARK 465 LYS A 101 REMARK 465 THR A 102 REMARK 465 HIS A 103 REMARK 465 GLY A 104 REMARK 465 ASP A 105 REMARK 465 HIS A 106 REMARK 465 ILE A 107 REMARK 465 ASP A 108 REMARK 465 THR A 109 REMARK 465 LEU A 110 REMARK 465 GLU A 111 REMARK 465 LEU A 112 REMARK 465 VAL A 113 REMARK 465 GLU A 114 REMARK 465 ARG A 115 REMARK 465 TYR A 116 REMARK 465 PRO A 117 REMARK 465 GLU A 118 REMARK 465 ALA A 119 REMARK 465 LEU A 120 REMARK 465 LEU A 121 REMARK 465 LEU A 122 REMARK 465 GLU A 123 REMARK 465 PHE A 124 REMARK 465 LYS A 125 REMARK 465 ARG A 126 REMARK 465 ASP A 127 REMARK 465 HIS A 128 REMARK 465 GLU A 129 REMARK 465 GLU A 130 REMARK 465 ARG A 131 REMARK 465 VAL A 132 REMARK 465 ARG A 133 REMARK 465 ASN A 134 REMARK 465 ALA A 135 REMARK 465 THR A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 VAL A 139 REMARK 465 ASP A 140 REMARK 465 LYS A 402 REMARK 465 GLU A 403 REMARK 465 GLY A 404 REMARK 465 ASN A 405 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 704 O HOH A 743 2.12 REMARK 500 O HOH A 533 O HOH A 749 2.13 REMARK 500 O HOH A 685 O HOH A 741 2.13 REMARK 500 O HOH A 658 O HOH A 760 2.15 REMARK 500 OE2 GLU A 207 O HOH A 501 2.16 REMARK 500 O TYR A 388 O HOH A 502 2.18 REMARK 500 O HOH A 556 O HOH A 583 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 501 O HOH A 609 1565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 176 13.45 59.85 REMARK 500 PHE A 351 66.29 -105.37 REMARK 500 SER A 390 122.96 -30.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 378 -10.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 803 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 804 DISTANCE = 6.04 ANGSTROMS DBREF1 8YSQ A 1 405 UNP A0A345ILN8_9DEIO DBREF2 8YSQ A A0A345ILN8 1 405 SEQRES 1 A 405 MET SER ASP PRO GLU GLN ALA SER PRO ALA ALA THR VAL SEQRES 2 A 405 GLN GLN THR LYS ALA LYS TYR THR LYS LEU PRO ARG PRO SEQRES 3 A 405 PRO ILE PRO GLU GLN THR LYS ARG GLU LEU TRP ALA ARG SEQRES 4 A 405 ALA ALA GLY ARG CYS GLN PHE ARG GLY CYS ASN LYS LEU SEQRES 5 A 405 LEU TYR ARG ASP GLU VAL ALA LYS GLU ALA HIS ASN GLY SEQRES 6 A 405 ALA THR ILE ALA HIS ILE VAL ALA TYR SER PRO ASP GLY SEQRES 7 A 405 PRO ARG GLY ASP THR THR ARG SER GLU LYS LEU GLU LYS SEQRES 8 A 405 ASP ILE SER ASN LEU MET LEU THR CYS LYS THR HIS GLY SEQRES 9 A 405 ASP HIS ILE ASP THR LEU GLU LEU VAL GLU ARG TYR PRO SEQRES 10 A 405 GLU ALA LEU LEU LEU GLU PHE LYS ARG ASP HIS GLU GLU SEQRES 11 A 405 ARG VAL ARG ASN ALA THR ALA ALA VAL ASP SER ASP LYS SEQRES 12 A 405 THR THR ILE LEU ILE VAL GLN GLY ALA VAL SER GLY LYS SEQRES 13 A 405 ARG VAL GLU VAL GLU PRO GLU GLN ALA ARG LYS ALA ILE SEQRES 14 A 405 LYS PRO ARG TRP PRO ALA ASN ASP GLY GLU THR LEU ILE SEQRES 15 A 405 ASP LEU ASN ASP LEU ALA ILE GLY GLU GLY ARG ALA ALA SEQRES 16 A 405 TYR TRP GLU VAL ALA THR GLU LYS ILE LYS ALA GLU ALA SEQRES 17 A 405 LYS GLN LEU LEU ARG ARG PRO ALA GLY GLN GLN PRO PRO SEQRES 18 A 405 GLN HIS LEU SER ILE PHE ALA LEU ALA PRO ILE PRO LEU SEQRES 19 A 405 LEU VAL LEU LEU GLY ALA GLU VAL ASN ARG VAL ASP VAL SEQRES 20 A 405 ASP LEU PHE GLN LYS HIS ARG GLY LYS SER ALA ASP THR SEQRES 21 A 405 TRP CYS TRP ASP GLU GLY GLU PRO ASP ALA ASP ASP ASP SEQRES 22 A 405 LEU LYS VAL PHE VAL PRO ALA GLU LEU PRO GLY GLU ILE SEQRES 23 A 405 GLU ASP ALA ALA ILE ILE VAL SER MET THR SER ILE VAL SEQRES 24 A 405 ASP ARG LYS ALA VAL ALA SER ALA ILE GLY HIS PRO HIS SEQRES 25 A 405 HIS ALA PHE GLU ILE LYS ALA ARG LYS PRO GLY PRO THR SEQRES 26 A 405 PHE LEU LYS TYR ARG SER GLN LEU THR SER PHE SER ASN SEQRES 27 A 405 GLU LEU TYR THR ILE LEU THR THR ILE ARG ASP ASP PHE SEQRES 28 A 405 ARG ARG VAL LYS ARG LEU HIS LEU ILE LEU ALA CYS PRO SEQRES 29 A 405 ALA PRO ILE ALA VAL GLU VAL GLY ARG SER LEU ILE GLU SEQRES 30 A 405 LYS ALA ASP PRO GLU ALA HIS VAL TYR GLU TYR LEU SER SEQRES 31 A 405 PRO SER TYR ARG ARG VAL LEU THR ILE ASN PRO LYS GLU SEQRES 32 A 405 GLY ASN FORMUL 2 HOH *304(H2 O) HELIX 1 AA1 GLU A 161 LYS A 170 1 10 HELIX 2 AA2 GLY A 192 ARG A 213 1 22 HELIX 3 AA3 PRO A 231 VAL A 242 1 12 HELIX 4 AA4 ASP A 269 ASP A 272 5 4 HELIX 5 AA5 ASP A 300 GLY A 309 1 10 HELIX 6 AA6 TYR A 329 PHE A 351 1 23 HELIX 7 AA7 PRO A 364 LEU A 375 1 12 SHEET 1 AA1 4 TRP A 173 LEU A 184 0 SHEET 2 AA1 4 LYS A 143 GLY A 151 1 N GLN A 150 O LEU A 184 SHEET 3 AA1 4 HIS A 223 LEU A 229 1 O PHE A 227 N LEU A 147 SHEET 4 AA1 4 ASP A 246 LEU A 249 1 O ASP A 248 N LEU A 224 SHEET 1 AA2 6 LEU A 274 PHE A 277 0 SHEET 2 AA2 6 HIS A 313 ALA A 319 -1 O LYS A 318 N LYS A 275 SHEET 3 AA2 6 ASP A 288 SER A 294 1 N ALA A 290 O HIS A 313 SHEET 4 AA2 6 ARG A 356 ALA A 362 1 O ALA A 362 N VAL A 293 SHEET 5 AA2 6 GLU A 382 LEU A 389 1 O HIS A 384 N LEU A 357 SHEET 6 AA2 6 SER A 392 ILE A 399 -1 O LEU A 397 N VAL A 385 CISPEP 1 LYS A 170 PRO A 171 0 8.96 CISPEP 2 SER A 390 PRO A 391 0 6.36 CRYST1 37.468 43.126 45.047 77.75 67.35 74.93 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026689 -0.007188 -0.010314 0.00000 SCALE2 0.000000 0.024014 -0.003046 0.00000 SCALE3 0.000000 0.000000 0.024247 0.00000