HEADER ELECTRON TRANSPORT 26-MAR-24 8YTS TITLE THE STRUCTURE OF THE CYTOCHROME C546/556 FROM THIOALKALIVIBRIO TITLE 2 PARADOXUS WITH UNUSUAL UV-VIS SPECTRAL FEATURES AT ATOMIC RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOALKALIVIBRIO PARADOXUS ARH 1; SOURCE 3 ORGANISM_TAXID: 713585 KEYWDS CYTOCHROME C546/556, MONOHEME CYTOCHROME, Q-BANDS SPLITTING, ROOM KEYWDS 2 TEMPERATURE, TWO CONFORMATIONS OF THE PROPIANATE GROUP, ELECTRON KEYWDS 3 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR L.A.VARFOLOMEEVA,A.Y.SOLOVIEVA,N.I.DERGOUSOVA,K.M.BOYKO, AUTHOR 2 T.V.TIKHONOVA,V.O.POPOV REVDAT 2 23-OCT-24 8YTS 1 REMARK REVDAT 1 24-APR-24 8YTS 0 JRNL AUTH L.A.VARFOLOMEEVA,A.Y.SOLOVIEVA,N.I.DERGOUSOVA,K.M.BOYKO, JRNL AUTH 2 T.V.TIKHONOVA,V.O.POPOV JRNL TITL THE STRUCTURE OF THE CYTOCHROME C546/556 FROM JRNL TITL 2 THIOALKALIVIBRIO PARADOXUS WITH UNUSUAL UV-VIS SPECTRAL JRNL TITL 3 FEATURES AT ATOMIC RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 45054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.116 REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3233 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.1670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.986 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1422 ; 0.020 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1236 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1958 ; 2.629 ; 1.769 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2817 ; 0.902 ; 1.653 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 5.933 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;35.361 ;26.418 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 198 ;12.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ; 1.554 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 179 ; 0.179 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1700 ; 0.019 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 302 ; 0.020 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 682 ; 1.425 ; 1.562 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 681 ; 1.374 ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 852 ; 1.879 ;38.307 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 853 ; 1.938 ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 740 ; 2.285 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 736 ; 2.287 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1105 ; 2.667 ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1725 ; 2.804 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1684 ; 2.543 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1370 ; 3.772 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 2435 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 8YTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300046360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47379 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, PH 3.5, 30% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.20800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.55850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.80050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.55850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.20800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 18.80050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 MET A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ILE A 12 REMARK 465 MET A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 HIS A 21 REMARK 465 ALA A 22 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 MET B 5 REMARK 465 VAL B 6 REMARK 465 VAL B 7 REMARK 465 VAL B 8 REMARK 465 ALA B 9 REMARK 465 GLY B 10 REMARK 465 VAL B 11 REMARK 465 ILE B 12 REMARK 465 MET B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 GLY B 16 REMARK 465 MET B 17 REMARK 465 ALA B 18 REMARK 465 SER B 19 REMARK 465 ALA B 20 REMARK 465 HIS B 21 REMARK 465 ALA B 22 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 69 CZ NH1 NH2 REMARK 480 ARG A 86 CD NE CZ NH1 NH2 REMARK 480 GLU B 26 CD OE1 OE2 REMARK 480 LYS B 45 CE NZ REMARK 480 ARG B 86 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 69 NE ARG A 69 CZ 0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 CD - NE - CZ ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 47 -142.03 61.30 REMARK 500 VAL A 74 -92.25 -100.57 REMARK 500 CYS B 36 -38.20 -131.57 REMARK 500 GLN B 47 131.94 -177.40 REMARK 500 ALA B 48 -122.77 52.73 REMARK 500 VAL B 74 -97.87 -102.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 69 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 392 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 NE2 REMARK 620 2 HEC A 201 NA 90.7 REMARK 620 3 HEC A 201 NB 86.9 91.1 REMARK 620 4 HEC A 201 NC 87.9 178.4 89.6 REMARK 620 5 HEC A 201 ND 93.2 88.9 179.9 90.4 REMARK 620 6 MET A 81 SD 171.9 94.2 86.6 87.2 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 40 NE2 REMARK 620 2 HEC B 201 NA 91.0 REMARK 620 3 HEC B 201 NB 88.5 90.2 REMARK 620 4 HEC B 201 NC 87.8 178.8 89.9 REMARK 620 5 HEC B 201 ND 91.8 89.7 179.6 90.3 REMARK 620 6 MET B 81 SD 172.1 94.4 85.8 86.8 93.9 REMARK 620 N 1 2 3 4 5 DBREF 8YTS A 1 105 UNP W0DLP1 W0DLP1_9GAMM 1 105 DBREF 8YTS B 1 105 UNP W0DLP1 W0DLP1_9GAMM 1 105 SEQRES 1 A 105 MET LYS LYS LEU MET VAL VAL VAL ALA GLY VAL ILE MET SEQRES 2 A 105 ALA SER GLY MET ALA SER ALA HIS ALA ALA ASP ILE GLU SEQRES 3 A 105 ALA GLY LYS ALA LYS TYR GLU SER THR CYS LEU SER CYS SEQRES 4 A 105 HIS GLY ALA GLU GLY LYS GLY GLN ALA ILE PHE PRO ALA SEQRES 5 A 105 VAL THR GLY GLN ASP ALA ALA TYR VAL THR GLU LYS LEU SEQRES 6 A 105 GLU GLN TYR ARG ALA GLY GLU GLN VAL GLY GLN HIS THR SEQRES 7 A 105 ALA LEU MET ALA PRO HIS ALA ARG THR LEU SER ASP GLU SEQRES 8 A 105 ASP ILE ALA ASN LEU ALA ALA TYR ILE ASP ALA GLU PHE SEQRES 9 A 105 ASN SEQRES 1 B 105 MET LYS LYS LEU MET VAL VAL VAL ALA GLY VAL ILE MET SEQRES 2 B 105 ALA SER GLY MET ALA SER ALA HIS ALA ALA ASP ILE GLU SEQRES 3 B 105 ALA GLY LYS ALA LYS TYR GLU SER THR CYS LEU SER CYS SEQRES 4 B 105 HIS GLY ALA GLU GLY LYS GLY GLN ALA ILE PHE PRO ALA SEQRES 5 B 105 VAL THR GLY GLN ASP ALA ALA TYR VAL THR GLU LYS LEU SEQRES 6 B 105 GLU GLN TYR ARG ALA GLY GLU GLN VAL GLY GLN HIS THR SEQRES 7 B 105 ALA LEU MET ALA PRO HIS ALA ARG THR LEU SER ASP GLU SEQRES 8 B 105 ASP ILE ALA ASN LEU ALA ALA TYR ILE ASP ALA GLU PHE SEQRES 9 B 105 ASN HET HEC A 201 81 HET HEC B 201 81 HETNAM HEC HEME C FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 5 HOH *187(H2 O) HELIX 1 AA1 ASP A 24 CYS A 36 1 13 HELIX 2 AA2 CYS A 36 GLY A 41 1 6 HELIX 3 AA3 ASP A 57 ALA A 70 1 14 HELIX 4 AA4 HIS A 77 ALA A 82 1 6 HELIX 5 AA5 PRO A 83 ALA A 85 5 3 HELIX 6 AA6 SER A 89 ASN A 105 1 17 HELIX 7 AA7 ASP B 24 CYS B 36 1 13 HELIX 8 AA8 CYS B 36 GLY B 41 1 6 HELIX 9 AA9 ASP B 57 ALA B 70 1 14 HELIX 10 AB1 HIS B 77 ALA B 82 1 6 HELIX 11 AB2 PRO B 83 ALA B 85 5 3 HELIX 12 AB3 SER B 89 ASN B 105 1 17 LINK SG CYS A 36 CAB HEC A 201 1555 1555 1.80 LINK SG CYS A 39 CAC HEC A 201 1555 1555 1.82 LINK SG CYS B 36 CAB HEC B 201 1555 1555 1.78 LINK SG CYS B 39 CAC HEC B 201 1555 1555 1.83 LINK NE2 HIS A 40 FE HEC A 201 1555 1555 1.98 LINK SD MET A 81 FE HEC A 201 1555 1555 2.31 LINK NE2 HIS B 40 FE HEC B 201 1555 1555 1.99 LINK SD MET B 81 FE HEC B 201 1555 1555 2.31 CRYST1 36.416 37.601 97.117 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027460 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010297 0.00000