HEADER HYDROLASE 17-APR-24 8Z4H TITLE PSEUDOMUREIN ENDOISOPEPTIDASE PEIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOISOPEPTIDASE PEIR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOBREVIBACTER RUMINANTIUM M1; SOURCE 3 ORGANISM_TAXID: 634498; SOURCE 4 GENE: PEIR, MRU_0320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHANOGENIC ARCHAEA, PSEUDOMUREIN, ENDOPEPTIDASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.Z.GUO,S.X.WANG,L.P.BAI REVDAT 2 10-DEC-25 8Z4H 1 COMPND REMARK HELIX SHEET REVDAT 2 2 1 SSBOND CRYST1 ATOM REVDAT 1 23-APR-25 8Z4H 0 JRNL AUTH L.Z.GUO,S.X.WANG,L.P.BAI JRNL TITL PSEUDOMUREIN ENDOISOPEPTIDASE PEIR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 71557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.7900 - 5.9300 0.98 2768 152 0.2041 0.1833 REMARK 3 2 5.9200 - 4.7000 1.00 2785 154 0.1706 0.2073 REMARK 3 3 4.7000 - 4.1100 1.00 2755 146 0.1504 0.1803 REMARK 3 4 4.1100 - 3.7300 0.88 2468 111 0.1630 0.1568 REMARK 3 5 3.7300 - 3.4600 0.87 2411 120 0.1872 0.2277 REMARK 3 6 3.4600 - 3.2600 0.86 2385 100 0.1953 0.2177 REMARK 3 7 3.2600 - 3.1000 1.00 2753 121 0.1920 0.2746 REMARK 3 8 3.1000 - 2.9600 1.00 2784 113 0.2054 0.2286 REMARK 3 9 2.9600 - 2.8500 1.00 2751 126 0.2223 0.3109 REMARK 3 10 2.8500 - 2.7500 1.00 2732 160 0.2305 0.2723 REMARK 3 11 2.7500 - 2.6800 0.97 2246 144 0.2246 0.2677 REMARK 3 12 2.6600 - 2.5900 0.98 2581 144 0.2166 0.2556 REMARK 3 13 2.5900 - 2.5200 1.00 2756 118 0.2195 0.2149 REMARK 3 14 2.5200 - 2.4600 1.00 2726 138 0.2125 0.2450 REMARK 3 15 2.4600 - 2.4000 0.99 2753 147 0.2320 0.2823 REMARK 3 16 2.4000 - 2.3500 1.00 2708 152 0.2346 0.2728 REMARK 3 17 2.3500 - 2.3000 1.00 2695 163 0.2359 0.2827 REMARK 3 18 2.3000 - 2.2600 1.00 2713 162 0.2289 0.2675 REMARK 3 19 2.2600 - 2.2200 0.74 2031 120 0.2571 0.2842 REMARK 3 20 2.2200 - 2.1800 1.00 2703 148 0.2526 0.2817 REMARK 3 21 2.1800 - 2.1500 1.00 2711 166 0.2524 0.3049 REMARK 3 22 2.1500 - 2.1100 1.00 2692 143 0.2705 0.2950 REMARK 3 23 2.1100 - 2.0800 1.00 2731 158 0.2766 0.2970 REMARK 3 24 2.0800 - 2.0500 0.69 1876 93 0.3321 0.4215 REMARK 3 25 2.0500 - 2.0300 1.00 2745 143 0.2921 0.3379 REMARK 3 26 2.0300 - 2.0000 1.00 2701 155 0.2996 0.3159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.228 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7559 REMARK 3 ANGLE : 0.840 10194 REMARK 3 CHIRALITY : 0.053 1044 REMARK 3 PLANARITY : 0.008 1299 REMARK 3 DIHEDRAL : 14.991 2859 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2063 -1.9782 35.4910 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.3619 REMARK 3 T33: 0.6861 T12: -0.0181 REMARK 3 T13: 0.1164 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 3.1210 L22: 2.2143 REMARK 3 L33: 1.7827 L12: 0.7811 REMARK 3 L13: -0.3500 L23: 0.6087 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: 0.0099 S13: -0.0688 REMARK 3 S21: -0.2131 S22: 0.1274 S23: -0.8445 REMARK 3 S31: -0.0276 S32: 0.3810 S33: 0.0568 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3313 0.0641 31.8404 REMARK 3 T TENSOR REMARK 3 T11: 0.3145 T22: 0.3086 REMARK 3 T33: 0.4472 T12: 0.0297 REMARK 3 T13: -0.0064 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 2.7384 L22: 3.5357 REMARK 3 L33: 2.2678 L12: 0.1167 REMARK 3 L13: 0.8521 L23: 0.3751 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: 0.0963 S13: 0.1145 REMARK 3 S21: -0.3277 S22: 0.0098 S23: 0.3676 REMARK 3 S31: -0.1362 S32: -0.1409 S33: 0.0346 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6576 1.2939 -8.4763 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.1883 REMARK 3 T33: 0.3070 T12: -0.0043 REMARK 3 T13: 0.0557 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.8812 L22: 3.9754 REMARK 3 L33: 2.8032 L12: 1.0879 REMARK 3 L13: -0.9414 L23: -0.8613 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.0255 S13: 0.0416 REMARK 3 S21: -0.1064 S22: 0.0335 S23: -0.5847 REMARK 3 S31: 0.0024 S32: 0.1999 S33: -0.0691 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7489 3.3801 -12.0802 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.2311 REMARK 3 T33: 0.3346 T12: 0.0156 REMARK 3 T13: -0.0461 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 2.3815 L22: 2.9704 REMARK 3 L33: 1.9393 L12: 0.1547 REMARK 3 L13: 0.1873 L23: -0.0789 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 0.2742 S13: 0.1619 REMARK 3 S21: -0.3635 S22: 0.0353 S23: 0.5184 REMARK 3 S31: -0.0380 S32: -0.1933 S33: -0.0240 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4499 -23.6561 43.0564 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.3136 REMARK 3 T33: 0.5536 T12: 0.0007 REMARK 3 T13: 0.1183 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 4.5251 L22: 3.4042 REMARK 3 L33: 1.7024 L12: -0.5833 REMARK 3 L13: 0.1626 L23: -0.1563 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: -0.2486 S13: -0.1920 REMARK 3 S21: 0.2950 S22: 0.1348 S23: 0.6390 REMARK 3 S31: 0.0424 S32: -0.2153 S33: -0.0723 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 116 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3506 -29.5586 32.3562 REMARK 3 T TENSOR REMARK 3 T11: 0.3274 T22: 0.2975 REMARK 3 T33: 0.5139 T12: 0.0441 REMARK 3 T13: 0.1100 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 2.3479 L22: 5.6081 REMARK 3 L33: 2.6631 L12: -1.1862 REMARK 3 L13: -0.5082 L23: 0.0789 REMARK 3 S TENSOR REMARK 3 S11: 0.0977 S12: 0.0466 S13: -0.0641 REMARK 3 S21: -0.6817 S22: -0.0924 S23: -0.4666 REMARK 3 S31: 0.0080 S32: 0.1031 S33: 0.0203 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5400 -20.4002 -0.6557 REMARK 3 T TENSOR REMARK 3 T11: 0.2248 T22: 0.2809 REMARK 3 T33: 0.7054 T12: -0.0113 REMARK 3 T13: 0.1235 T23: 0.0819 REMARK 3 L TENSOR REMARK 3 L11: 4.2078 L22: 1.3517 REMARK 3 L33: 1.5342 L12: 0.9051 REMARK 3 L13: 0.3544 L23: -0.8037 REMARK 3 S TENSOR REMARK 3 S11: -0.0352 S12: -0.1507 S13: -0.3144 REMARK 3 S21: 0.3403 S22: 0.0732 S23: 1.2611 REMARK 3 S31: 0.0757 S32: -0.2500 S33: -0.0040 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 76 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0230 -24.6020 -8.8282 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.1843 REMARK 3 T33: 0.2342 T12: 0.0158 REMARK 3 T13: 0.0179 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.6831 L22: 4.6436 REMARK 3 L33: 1.2569 L12: -0.2586 REMARK 3 L13: -0.2319 L23: -0.1365 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.2894 S13: -0.3330 REMARK 3 S21: -0.4756 S22: -0.0264 S23: 0.0007 REMARK 3 S31: 0.0942 S32: 0.0443 S33: 0.0302 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Z4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 18-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300047033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95039 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 73.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 2.770 REMARK 200 R MERGE (I) : 0.06760 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76980 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT:25% W/V POLYETHYLENE REMARK 280 GLYCOL 3,350; BUFFER:0.1 M HEPES PH 7.5; SALT :0.2 M AMMONIUM REMARK 280 SULFATE;, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.45800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 387 O HOH A 414 1.90 REMARK 500 O HOH C 409 O HOH C 430 1.91 REMARK 500 O HOH A 319 O HOH A 427 2.03 REMARK 500 O HOH C 425 O HOH C 428 2.10 REMARK 500 O HOH A 429 O HOH A 455 2.13 REMARK 500 OD1 ASN C 213 O HOH C 301 2.13 REMARK 500 O HOH D 441 O HOH D 450 2.15 REMARK 500 O HOH D 408 O HOH D 423 2.16 REMARK 500 O HOH C 379 O HOH C 417 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 456 O HOH C 437 2656 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 143.90 -39.35 REMARK 500 HIS A 104 58.25 -147.78 REMARK 500 LYS A 172 105.56 -169.54 REMARK 500 PHE A 179 160.98 179.19 REMARK 500 LYS A 200 -48.13 -135.61 REMARK 500 HIS B 104 59.92 -142.72 REMARK 500 LYS B 172 -60.99 -131.41 REMARK 500 LYS B 200 -48.37 -136.35 REMARK 500 HIS C 104 58.99 -147.77 REMARK 500 LYS C 172 -57.38 -123.20 REMARK 500 LYS C 200 -52.10 -136.38 REMARK 500 HIS D 104 56.56 -147.07 REMARK 500 LYS D 172 -60.46 -126.87 REMARK 500 LYS D 200 -45.65 -139.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 177 ASN A 178 -148.76 REMARK 500 GLY B 177 ASN B 178 -140.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 472 DISTANCE = 6.00 ANGSTROMS DBREF 8Z4H A 1 228 UNP D3DZZ6 D3DZZ6_METRM 1 228 DBREF 8Z4H B 1 228 UNP D3DZZ6 D3DZZ6_METRM 1 228 DBREF 8Z4H C 1 228 UNP D3DZZ6 D3DZZ6_METRM 1 228 DBREF 8Z4H D 1 228 UNP D3DZZ6 D3DZZ6_METRM 1 228 SEQRES 1 A 228 MET VAL ARG PHE SER ARG ASP MET LEU GLN ASP GLY ALA SEQRES 2 A 228 LYS ARG MET PHE LYS TRP LEU ARG LYS GLY GLU GLY LEU SEQRES 3 A 228 PRO ASN TYR LEU ILE MET TYR ASP MET ASP ARG ASN LYS SEQRES 4 A 228 GLU TYR LYS LEU VAL PRO LYS GLU TYR ALA GLY LEU TYR SEQRES 5 A 228 GLU SER ARG ASN ILE PHE TRP ILE LYS ASN GLY ARG GLU SEQRES 6 A 228 PRO ASN TYR VAL THR LEU THR SER VAL ALA ARG ASN PRO SEQRES 7 A 228 LEU VAL MET ASP TYR GLN ASN THR ASN TYR THR CYS CYS SEQRES 8 A 228 PRO THR SER LEU SER LEU ALA SER GLN MET LEU TYR HIS SEQRES 9 A 228 TYR LYS SER GLU SER GLU CYS ALA LYS ALA LEU GLY THR SEQRES 10 A 228 SER LYS GLY SER GLY THR SER PRO ALA GLN LEU ILE ALA SEQRES 11 A 228 ASN ALA PRO LYS LEU GLY PHE LYS ILE ILE PRO ILE LYS SEQRES 12 A 228 ARG ASP SER LYS GLU VAL LYS LYS TYR LEU LYS LYS GLY SEQRES 13 A 228 PHE PRO VAL ILE CYS HIS TRP GLN VAL ASN GLN SER ARG SEQRES 14 A 228 ASN CYS LYS GLY ASP TYR THR GLY ASN PHE GLY HIS TYR SEQRES 15 A 228 GLY LEU ILE TRP ASP MET THR SER THR HIS TYR VAL VAL SEQRES 16 A 228 ALA ASP PRO ALA LYS GLY VAL ASN ARG LYS TYR LYS PHE SEQRES 17 A 228 SER CYS LEU ASP ASN ALA ASN LYS GLY TYR ARG GLN ASN SEQRES 18 A 228 TYR TYR VAL VAL CYS PRO ALA SEQRES 1 B 228 MET VAL ARG PHE SER ARG ASP MET LEU GLN ASP GLY ALA SEQRES 2 B 228 LYS ARG MET PHE LYS TRP LEU ARG LYS GLY GLU GLY LEU SEQRES 3 B 228 PRO ASN TYR LEU ILE MET TYR ASP MET ASP ARG ASN LYS SEQRES 4 B 228 GLU TYR LYS LEU VAL PRO LYS GLU TYR ALA GLY LEU TYR SEQRES 5 B 228 GLU SER ARG ASN ILE PHE TRP ILE LYS ASN GLY ARG GLU SEQRES 6 B 228 PRO ASN TYR VAL THR LEU THR SER VAL ALA ARG ASN PRO SEQRES 7 B 228 LEU VAL MET ASP TYR GLN ASN THR ASN TYR THR CYS CYS SEQRES 8 B 228 PRO THR SER LEU SER LEU ALA SER GLN MET LEU TYR HIS SEQRES 9 B 228 TYR LYS SER GLU SER GLU CYS ALA LYS ALA LEU GLY THR SEQRES 10 B 228 SER LYS GLY SER GLY THR SER PRO ALA GLN LEU ILE ALA SEQRES 11 B 228 ASN ALA PRO LYS LEU GLY PHE LYS ILE ILE PRO ILE LYS SEQRES 12 B 228 ARG ASP SER LYS GLU VAL LYS LYS TYR LEU LYS LYS GLY SEQRES 13 B 228 PHE PRO VAL ILE CYS HIS TRP GLN VAL ASN GLN SER ARG SEQRES 14 B 228 ASN CYS LYS GLY ASP TYR THR GLY ASN PHE GLY HIS TYR SEQRES 15 B 228 GLY LEU ILE TRP ASP MET THR SER THR HIS TYR VAL VAL SEQRES 16 B 228 ALA ASP PRO ALA LYS GLY VAL ASN ARG LYS TYR LYS PHE SEQRES 17 B 228 SER CYS LEU ASP ASN ALA ASN LYS GLY TYR ARG GLN ASN SEQRES 18 B 228 TYR TYR VAL VAL CYS PRO ALA SEQRES 1 C 228 MET VAL ARG PHE SER ARG ASP MET LEU GLN ASP GLY ALA SEQRES 2 C 228 LYS ARG MET PHE LYS TRP LEU ARG LYS GLY GLU GLY LEU SEQRES 3 C 228 PRO ASN TYR LEU ILE MET TYR ASP MET ASP ARG ASN LYS SEQRES 4 C 228 GLU TYR LYS LEU VAL PRO LYS GLU TYR ALA GLY LEU TYR SEQRES 5 C 228 GLU SER ARG ASN ILE PHE TRP ILE LYS ASN GLY ARG GLU SEQRES 6 C 228 PRO ASN TYR VAL THR LEU THR SER VAL ALA ARG ASN PRO SEQRES 7 C 228 LEU VAL MET ASP TYR GLN ASN THR ASN TYR THR CYS CYS SEQRES 8 C 228 PRO THR SER LEU SER LEU ALA SER GLN MET LEU TYR HIS SEQRES 9 C 228 TYR LYS SER GLU SER GLU CYS ALA LYS ALA LEU GLY THR SEQRES 10 C 228 SER LYS GLY SER GLY THR SER PRO ALA GLN LEU ILE ALA SEQRES 11 C 228 ASN ALA PRO LYS LEU GLY PHE LYS ILE ILE PRO ILE LYS SEQRES 12 C 228 ARG ASP SER LYS GLU VAL LYS LYS TYR LEU LYS LYS GLY SEQRES 13 C 228 PHE PRO VAL ILE CYS HIS TRP GLN VAL ASN GLN SER ARG SEQRES 14 C 228 ASN CYS LYS GLY ASP TYR THR GLY ASN PHE GLY HIS TYR SEQRES 15 C 228 GLY LEU ILE TRP ASP MET THR SER THR HIS TYR VAL VAL SEQRES 16 C 228 ALA ASP PRO ALA LYS GLY VAL ASN ARG LYS TYR LYS PHE SEQRES 17 C 228 SER CYS LEU ASP ASN ALA ASN LYS GLY TYR ARG GLN ASN SEQRES 18 C 228 TYR TYR VAL VAL CYS PRO ALA SEQRES 1 D 228 MET VAL ARG PHE SER ARG ASP MET LEU GLN ASP GLY ALA SEQRES 2 D 228 LYS ARG MET PHE LYS TRP LEU ARG LYS GLY GLU GLY LEU SEQRES 3 D 228 PRO ASN TYR LEU ILE MET TYR ASP MET ASP ARG ASN LYS SEQRES 4 D 228 GLU TYR LYS LEU VAL PRO LYS GLU TYR ALA GLY LEU TYR SEQRES 5 D 228 GLU SER ARG ASN ILE PHE TRP ILE LYS ASN GLY ARG GLU SEQRES 6 D 228 PRO ASN TYR VAL THR LEU THR SER VAL ALA ARG ASN PRO SEQRES 7 D 228 LEU VAL MET ASP TYR GLN ASN THR ASN TYR THR CYS CYS SEQRES 8 D 228 PRO THR SER LEU SER LEU ALA SER GLN MET LEU TYR HIS SEQRES 9 D 228 TYR LYS SER GLU SER GLU CYS ALA LYS ALA LEU GLY THR SEQRES 10 D 228 SER LYS GLY SER GLY THR SER PRO ALA GLN LEU ILE ALA SEQRES 11 D 228 ASN ALA PRO LYS LEU GLY PHE LYS ILE ILE PRO ILE LYS SEQRES 12 D 228 ARG ASP SER LYS GLU VAL LYS LYS TYR LEU LYS LYS GLY SEQRES 13 D 228 PHE PRO VAL ILE CYS HIS TRP GLN VAL ASN GLN SER ARG SEQRES 14 D 228 ASN CYS LYS GLY ASP TYR THR GLY ASN PHE GLY HIS TYR SEQRES 15 D 228 GLY LEU ILE TRP ASP MET THR SER THR HIS TYR VAL VAL SEQRES 16 D 228 ALA ASP PRO ALA LYS GLY VAL ASN ARG LYS TYR LYS PHE SEQRES 17 D 228 SER CYS LEU ASP ASN ALA ASN LYS GLY TYR ARG GLN ASN SEQRES 18 D 228 TYR TYR VAL VAL CYS PRO ALA FORMUL 5 HOH *661(H2 O) HELIX 1 AA1 ARG A 6 LYS A 22 1 17 HELIX 2 AA2 VAL A 44 GLY A 63 1 20 HELIX 3 AA3 THR A 89 LEU A 102 1 14 HELIX 4 AA4 SER A 107 GLY A 116 1 10 HELIX 5 AA5 SER A 124 ALA A 132 1 9 HELIX 6 AA6 PRO A 133 LEU A 135 5 3 HELIX 7 AA7 ASP A 145 LYS A 155 1 11 HELIX 8 AA8 ASN A 166 ARG A 169 5 4 HELIX 9 AA9 PHE A 208 ASN A 213 1 6 HELIX 10 AB1 ARG B 6 ARG B 21 1 16 HELIX 11 AB2 VAL B 44 GLY B 63 1 20 HELIX 12 AB3 THR B 89 LEU B 102 1 14 HELIX 13 AB4 SER B 107 GLY B 116 1 10 HELIX 14 AB5 SER B 124 ALA B 132 1 9 HELIX 15 AB6 PRO B 133 LEU B 135 5 3 HELIX 16 AB7 ASP B 145 LYS B 155 1 11 HELIX 17 AB8 ASN B 166 ARG B 169 5 4 HELIX 18 AB9 PHE B 208 ASN B 213 1 6 HELIX 19 AC1 ARG C 6 ARG C 21 1 16 HELIX 20 AC2 VAL C 44 GLY C 63 1 20 HELIX 21 AC3 THR C 89 LEU C 102 1 14 HELIX 22 AC4 SER C 107 GLY C 116 1 10 HELIX 23 AC5 SER C 124 ALA C 132 1 9 HELIX 24 AC6 PRO C 133 LEU C 135 5 3 HELIX 25 AC7 ASP C 145 LYS C 155 1 11 HELIX 26 AC8 ASN C 166 ARG C 169 5 4 HELIX 27 AC9 PHE C 208 ALA C 214 1 7 HELIX 28 AD1 ARG D 6 ARG D 21 1 16 HELIX 29 AD2 VAL D 44 GLY D 63 1 20 HELIX 30 AD3 THR D 89 LEU D 102 1 14 HELIX 31 AD4 SER D 107 GLY D 116 1 10 HELIX 32 AD5 SER D 124 ALA D 132 1 9 HELIX 33 AD6 PRO D 133 LEU D 135 5 3 HELIX 34 AD7 ASP D 145 LYS D 155 1 11 HELIX 35 AD8 ASN D 166 ARG D 169 5 4 HELIX 36 AD9 PHE D 208 ASN D 213 1 6 SHEET 1 AA1 2 ARG A 3 SER A 5 0 SHEET 2 AA1 2 TYR A 68 THR A 70 -1 O VAL A 69 N PHE A 4 SHEET 1 AA2 2 LEU A 30 TYR A 33 0 SHEET 2 AA2 2 GLU A 40 LEU A 43 -1 O TYR A 41 N MET A 32 SHEET 1 AA3 6 PHE A 137 ILE A 142 0 SHEET 2 AA3 6 TYR A 222 PRO A 227 -1 O TYR A 222 N ILE A 142 SHEET 3 AA3 6 VAL A 159 GLN A 164 -1 N ILE A 160 O TYR A 223 SHEET 4 AA3 6 GLY A 180 MET A 188 -1 O ILE A 185 N VAL A 159 SHEET 5 AA3 6 HIS A 192 ASP A 197 -1 O ALA A 196 N LEU A 184 SHEET 6 AA3 6 GLY A 201 LYS A 207 -1 O TYR A 206 N TYR A 193 SHEET 1 AA4 2 ARG B 3 SER B 5 0 SHEET 2 AA4 2 TYR B 68 THR B 70 -1 O VAL B 69 N PHE B 4 SHEET 1 AA5 2 LEU B 30 TYR B 33 0 SHEET 2 AA5 2 GLU B 40 LEU B 43 -1 O LEU B 43 N LEU B 30 SHEET 1 AA6 6 PHE B 137 ILE B 142 0 SHEET 2 AA6 6 TYR B 222 PRO B 227 -1 O TYR B 222 N ILE B 142 SHEET 3 AA6 6 VAL B 159 GLN B 164 -1 N ILE B 160 O TYR B 223 SHEET 4 AA6 6 GLY B 180 MET B 188 -1 O ILE B 185 N VAL B 159 SHEET 5 AA6 6 HIS B 192 ASP B 197 -1 O VAL B 194 N ASP B 187 SHEET 6 AA6 6 GLY B 201 LYS B 207 -1 O ARG B 204 N VAL B 195 SHEET 1 AA7 2 ARG C 3 SER C 5 0 SHEET 2 AA7 2 TYR C 68 THR C 70 -1 O VAL C 69 N PHE C 4 SHEET 1 AA8 2 LEU C 30 TYR C 33 0 SHEET 2 AA8 2 GLU C 40 LEU C 43 -1 O TYR C 41 N MET C 32 SHEET 1 AA9 6 PHE C 137 ILE C 142 0 SHEET 2 AA9 6 TYR C 222 PRO C 227 -1 O CYS C 226 N LYS C 138 SHEET 3 AA9 6 VAL C 159 GLN C 164 -1 N ILE C 160 O TYR C 223 SHEET 4 AA9 6 GLY C 180 MET C 188 -1 O ILE C 185 N VAL C 159 SHEET 5 AA9 6 HIS C 192 ASP C 197 -1 O ALA C 196 N LEU C 184 SHEET 6 AA9 6 GLY C 201 LYS C 207 -1 O GLY C 201 N ASP C 197 SHEET 1 AB1 2 ARG D 3 SER D 5 0 SHEET 2 AB1 2 TYR D 68 THR D 70 -1 O VAL D 69 N PHE D 4 SHEET 1 AB2 2 LEU D 30 TYR D 33 0 SHEET 2 AB2 2 GLU D 40 LEU D 43 -1 O TYR D 41 N MET D 32 SHEET 1 AB3 6 PHE D 137 ILE D 142 0 SHEET 2 AB3 6 TYR D 222 PRO D 227 -1 O CYS D 226 N LYS D 138 SHEET 3 AB3 6 VAL D 159 GLN D 164 -1 N ILE D 160 O TYR D 223 SHEET 4 AB3 6 GLY D 180 MET D 188 -1 O ILE D 185 N VAL D 159 SHEET 5 AB3 6 HIS D 192 ASP D 197 -1 O ALA D 196 N LEU D 184 SHEET 6 AB3 6 GLY D 201 LYS D 207 -1 O TYR D 206 N TYR D 193 SSBOND 1 CYS A 171 CYS A 210 1555 1555 2.05 SSBOND 2 CYS B 171 CYS B 210 1555 1555 2.05 SSBOND 3 CYS C 171 CYS C 210 1555 1555 2.06 SSBOND 4 CYS D 171 CYS D 210 1555 1555 2.06 CRYST1 73.828 86.916 87.993 90.00 91.85 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013545 0.000000 0.000438 0.00000 SCALE2 0.000000 0.011505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011370 0.00000 CONECT 1384 1696 CONECT 1696 1384 CONECT 3228 3540 CONECT 3540 3228 CONECT 5071 5383 CONECT 5383 5071 CONECT 6915 7227 CONECT 7227 6915 MASTER 436 0 0 36 40 0 0 6 8032 4 8 72 END