HEADER OXIDOREDUCTASE 18-APR-24 8Z5B TITLE THE X-RAY CRYSTAL STRUCTURE OF MULTICOPPER OXIDASE FROM BACILLUS TITLE 2 FREUDENREICHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTICOPPER OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.16.3.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS FREUDENREICHII; SOURCE 3 ORGANISM_TAXID: 1783501; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDIZED POLYPHENOL SUBSTRATES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.QIAN,Y.WANG REVDAT 2 03-SEP-25 8Z5B 1 JRNL REVDAT 1 19-FEB-25 8Z5B 0 JRNL AUTH H.QIAN,Y.WANG,X.ZHOU,T.GU,H.WANG,H.LYU,Z.LI,X.LI,H.ZHOU, JRNL AUTH 2 C.GUO,F.YUAN,Y.WANG JRNL TITL ESM-EZY: A DEEP LEARNING STRATEGY FOR THE MINING OF NOVEL JRNL TITL 2 MULTICOPPER OXIDASES WITH SUPERIOR PROPERTIES. JRNL REF NAT COMMUN V. 16 3274 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40188191 JRNL DOI 10.1038/S41467-025-58521-Y REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 124244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.610 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0200 - 3.3700 0.99 9604 157 0.1428 0.1621 REMARK 3 2 3.3700 - 2.6800 1.00 9248 152 0.1542 0.1453 REMARK 3 3 2.6800 - 2.3400 1.00 9141 149 0.1573 0.1830 REMARK 3 4 2.3400 - 2.1300 1.00 9081 149 0.1544 0.1679 REMARK 3 5 2.1300 - 1.9700 1.00 9050 147 0.1513 0.1664 REMARK 3 6 1.9700 - 1.8600 1.00 8982 147 0.1600 0.1888 REMARK 3 7 1.8600 - 1.7600 0.99 8944 147 0.1601 0.1869 REMARK 3 8 1.7600 - 1.6900 0.98 8813 144 0.1689 0.1661 REMARK 3 9 1.6900 - 1.6200 0.98 8758 143 0.1654 0.1707 REMARK 3 10 1.6200 - 1.5700 0.96 8653 142 0.1655 0.1950 REMARK 3 11 1.5700 - 1.5200 0.94 8415 138 0.1762 0.2010 REMARK 3 12 1.5200 - 1.4700 0.91 8145 133 0.1986 0.2168 REMARK 3 13 1.4700 - 1.4300 0.89 7884 129 0.2430 0.2716 REMARK 3 14 1.4300 - 1.4000 0.84 7526 123 0.3160 0.3682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4271 REMARK 3 ANGLE : 1.041 5822 REMARK 3 CHIRALITY : 0.093 625 REMARK 3 PLANARITY : 0.011 757 REMARK 3 DIHEDRAL : 6.554 563 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.0109 37.6102 75.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1488 REMARK 3 T33: 0.0590 T12: 0.0018 REMARK 3 T13: 0.0303 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 3.3785 L22: 1.7746 REMARK 3 L33: 0.9274 L12: 0.6423 REMARK 3 L13: 0.2196 L23: -0.5418 REMARK 3 S TENSOR REMARK 3 S11: -0.0712 S12: 0.4233 S13: -0.0204 REMARK 3 S21: -0.1047 S22: 0.0573 S23: -0.0485 REMARK 3 S31: -0.0027 S32: 0.0729 S33: 0.0146 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.0159 27.9281 82.6293 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.1256 REMARK 3 T33: 0.1090 T12: -0.0097 REMARK 3 T13: -0.0004 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.1612 L22: 1.1458 REMARK 3 L33: 0.6982 L12: 0.1644 REMARK 3 L13: -0.0688 L23: -0.2756 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: 0.1087 S13: -0.0987 REMARK 3 S21: -0.0313 S22: 0.0620 S23: 0.1378 REMARK 3 S31: 0.0106 S32: -0.0793 S33: -0.0228 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.0783 41.5822 86.2860 REMARK 3 T TENSOR REMARK 3 T11: 0.1171 T22: 0.1188 REMARK 3 T33: 0.0888 T12: -0.0095 REMARK 3 T13: -0.0138 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.0654 L22: 1.9049 REMARK 3 L33: 0.6772 L12: -0.5448 REMARK 3 L13: 0.1228 L23: -0.7067 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: 0.0472 S13: 0.0479 REMARK 3 S21: 0.1405 S22: 0.0371 S23: -0.0719 REMARK 3 S31: -0.1218 S32: 0.0112 S33: 0.0237 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.2518 50.3823 89.3502 REMARK 3 T TENSOR REMARK 3 T11: 0.1963 T22: 0.1113 REMARK 3 T33: 0.1176 T12: 0.0231 REMARK 3 T13: -0.0140 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.5817 L22: 1.4400 REMARK 3 L33: 1.0584 L12: -0.2739 REMARK 3 L13: -0.1900 L23: -0.4383 REMARK 3 S TENSOR REMARK 3 S11: -0.0667 S12: 0.0776 S13: 0.2145 REMARK 3 S21: 0.2343 S22: 0.0986 S23: 0.0681 REMARK 3 S31: -0.2024 S32: -0.1210 S33: -0.0554 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 463 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.4847 29.5450 106.4608 REMARK 3 T TENSOR REMARK 3 T11: 0.3016 T22: 0.2360 REMARK 3 T33: 0.1460 T12: 0.0737 REMARK 3 T13: 0.0428 T23: 0.0733 REMARK 3 L TENSOR REMARK 3 L11: 1.4053 L22: 1.3315 REMARK 3 L33: 0.6977 L12: -0.4448 REMARK 3 L13: -0.2942 L23: -0.1018 REMARK 3 S TENSOR REMARK 3 S11: -0.1297 S12: -0.1778 S13: -0.1383 REMARK 3 S21: 0.5310 S22: 0.1983 S23: 0.1427 REMARK 3 S31: -0.1248 S32: -0.0969 S33: -0.0365 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 464 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.9875 44.0756 108.9792 REMARK 3 T TENSOR REMARK 3 T11: 0.3825 T22: 0.2074 REMARK 3 T33: 0.1489 T12: 0.0856 REMARK 3 T13: 0.0175 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.0796 L22: 0.3247 REMARK 3 L33: 3.0697 L12: 0.0514 REMARK 3 L13: 0.0614 L23: -0.4170 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: -0.0541 S13: 0.0277 REMARK 3 S21: 0.4216 S22: 0.1111 S23: 0.0029 REMARK 3 S31: -0.3771 S32: 0.2115 S33: -0.0673 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 506 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.6820 32.4286 100.7821 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.1794 REMARK 3 T33: 0.1402 T12: 0.0599 REMARK 3 T13: 0.0546 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.2894 L22: 1.3974 REMARK 3 L33: 1.3785 L12: -0.3306 REMARK 3 L13: -0.0030 L23: -0.3222 REMARK 3 S TENSOR REMARK 3 S11: -0.0761 S12: -0.0644 S13: -0.1073 REMARK 3 S21: 0.2701 S22: 0.1606 S23: 0.2513 REMARK 3 S31: -0.1581 S32: -0.1829 S33: -0.0728 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Z5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 23-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300046751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 20% V/V ETHANOL, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.47300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.29500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.73650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.29500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.20950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.29500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.29500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.73650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.29500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.29500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 173.20950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 115.47300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 THR A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 GLN A 28 REMARK 465 GLN A 29 REMARK 465 MET A 30 REMARK 465 GLY A 31 REMARK 465 ARG A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 MET A 35 REMARK 465 LYS A 36 REMARK 465 ILE A 37 REMARK 465 LYS A 38 REMARK 465 ASN A 39 REMARK 465 LYS A 40 REMARK 465 ARG A 41 REMARK 465 ARG A 42 REMARK 465 MET A 43 REMARK 465 LYS A 551 REMARK 465 GLU A 552 REMARK 465 LYS A 553 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1059 O HOH A 1176 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 182 -40.24 -133.45 REMARK 500 HIS A 202 23.66 -142.09 REMARK 500 ASP A 234 -123.09 59.98 REMARK 500 PRO A 271 36.83 -80.61 REMARK 500 THR A 305 -39.92 -131.13 REMARK 500 ALA A 342 -9.76 79.78 REMARK 500 LEU A 465 -35.62 69.58 REMARK 500 ASP A 484 10.75 -140.62 REMARK 500 TYR A 528 -168.48 -125.55 REMARK 500 TYR A 540 88.83 -157.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1327 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 154 ND1 REMARK 620 2 HIS A 200 NE2 139.5 REMARK 620 3 HIS A 533 NE2 109.2 109.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 202 NE2 REMARK 620 2 HIS A 464 NE2 117.1 REMARK 620 3 HIS A 531 NE2 111.1 105.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 459 ND1 REMARK 620 2 CYS A 532 SG 125.9 REMARK 620 3 HIS A 537 ND1 102.6 129.7 REMARK 620 N 1 2 DBREF 8Z5B A 1 553 PDB 8Z5B 8Z5B 1 553 SEQRES 1 A 553 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 553 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 553 GLY GLN GLN MET GLY ARG GLY SER MET LYS ILE LYS ASN SEQRES 4 A 553 LYS ARG ARG MET LYS VAL ASP PRO SER ASN PRO GLU THR SEQRES 5 A 553 ILE PRO LYS TYR MET ASP GLU LEU PRO ILE PRO PRO VAL SEQRES 6 A 553 ALA ARG PRO LEU ALA GLU ILE LYS GLY SER PRO TYR TYR SEQRES 7 A 553 GLU ILE ALA MET ARG GLN VAL PRO HIS ARG PHE HIS ARG SEQRES 8 A 553 LEU PHE PRO PRO THR THR VAL TRP GLY TYR ASP GLY MET SEQRES 9 A 553 LEU PRO GLY PRO THR ILE LYS VAL GLN LYS ASP GLU LYS SEQRES 10 A 553 ILE TYR VAL ARG TRP LYS ASN LYS LEU PRO GLU LYS HIS SEQRES 11 A 553 LEU LEU PRO ILE ASP ARG THR LEU HIS GLU THR ALA GLY SEQRES 12 A 553 PRO PRO ASP VAL ARG THR VAL VAL HIS LEU HIS GLY ALA SEQRES 13 A 553 ASN VAL ALA TRP ASP SER ASP GLY HIS PRO GLU ALA TRP SEQRES 14 A 553 PHE SER ARG ASP PHE ALA LYS THR GLY ALA THR PHE ARG SEQRES 15 A 553 ARG LYS VAL TYR GLU TYR THR ASN LYS GLN MET GLY ALA SEQRES 16 A 553 THR LEU TRP TYR HIS ASP HIS ALA ILE GLY ILE THR ARG SEQRES 17 A 553 LEU ASN VAL TYR SER GLY LEU SER GLY PHE TYR LEU ILE SEQRES 18 A 553 GLU ASP PRO VAL GLU LYS HIS LEU LYS LEU PRO LYS ASP SEQRES 19 A 553 GLY TYR ASP ILE PRO LEU MET ILE GLN ASP ARG SER PHE SEQRES 20 A 553 ARG SER ASP GLY SER LEU SER TYR PRO GLU ASN THR ASN SEQRES 21 A 553 PRO PRO ALA PRO VAL ASN PRO SER VAL GLN PRO PHE PHE SEQRES 22 A 553 ILE GLY ASN THR ILE ALA VAL ASN GLY LYS ILE TRP PRO SEQRES 23 A 553 LYS LEU THR VAL GLU PRO ARG LYS TYR ARG PHE ARG ILE SEQRES 24 A 553 LEU ASN ALA SER ASN THR ASN ALA TYR THR LEU ARG LEU SEQRES 25 A 553 GLY ASP GLY ARG LYS PHE TYR GLN ILE SER THR ASP GLY SEQRES 26 A 553 GLY LEU LEU THR GLU PRO VAL GLU LEU THR THR LEU PRO SEQRES 27 A 553 LEU GLU PRO ALA GLU ARG SER ASP VAL ILE ILE ASP PHE SEQRES 28 A 553 SER GLN HIS LYS GLY LYS LYS LEU ILE LEU GLN ASN THR SEQRES 29 A 553 ASN ALA GLU GLY ASN MET GLY ILE ILE MET ARG PHE ASP SEQRES 30 A 553 VAL LEU GLN PRO LEU ARG GLY ARG ASP THR SER GLU ILE SEQRES 31 A 553 PRO ALA LYS LEU ILE SER GLU GLU GLN VAL LEU TYR GLU SEQRES 32 A 553 HIS HIS ALA ASP LYS THR ARG LEU LEU LYS LEU ASP ALA SEQRES 33 A 553 ILE GLN ASP GLU TYR ASN ARG PRO VAL LEU LEU LEU ASP SEQRES 34 A 553 ASP ARG MET TRP HIS ASP PRO VAL THR GLU LYS PRO VAL SEQRES 35 A 553 ILE GLY ASP THR GLU VAL TRP LYS LEU ILE ASN VAL THR SEQRES 36 A 553 ASN PHE ALA HIS PRO ILE HIS ILE HIS LEU ILE GLN PHE SEQRES 37 A 553 LYS ILE LEU HIS ARG THR PRO PHE ASP LEU GLU ARG PHE SEQRES 38 A 553 GLN GLN ASP GLY TYR ILE ASP TYR THR GLY PRO PRO ILE SEQRES 39 A 553 GLU PRO ALA VAL HIS GLU ARG GLY TRP LYS ASP THR VAL SEQRES 40 A 553 LYS ALA GLU PRO GLY MET VAL THR SER VAL ILE MET LYS SEQRES 41 A 553 PHE THR GLU ASN PRO GLY GLU TYR VAL TRP HIS CYS HIS SEQRES 42 A 553 ILE LEU GLU HIS GLU ASP TYR ASP MET MET ARG PRO MET SEQRES 43 A 553 ARG VAL VAL GLU LYS GLU LYS HET MN A 601 1 HET CU A 602 1 HET CU A 603 1 HETNAM MN MANGANESE (II) ION HETNAM CU COPPER (II) ION FORMUL 2 MN MN 2+ FORMUL 3 CU 2(CU 2+) FORMUL 5 HOH *627(H2 O) HELIX 1 AA1 ASN A 49 ILE A 53 5 5 HELIX 2 AA2 ALA A 159 ASP A 163 5 5 HELIX 3 AA3 SER A 171 ALA A 175 5 5 HELIX 4 AA4 ILE A 206 SER A 213 1 8 HELIX 5 AA5 ASP A 223 LEU A 229 5 7 HELIX 6 AA6 LYS A 233 GLY A 235 5 3 HELIX 7 AA7 SER A 352 LYS A 355 5 4 HELIX 8 AA8 GLU A 367 MET A 370 5 4 HELIX 9 AA9 TYR A 402 ALA A 406 5 5 HELIX 10 AB1 ASP A 477 GLY A 485 1 9 HELIX 11 AB2 ILE A 534 ASP A 539 1 6 SHEET 1 AA1 3 ALA A 70 ILE A 72 0 SHEET 2 AA1 3 SER A 75 HIS A 87 -1 O TYR A 77 N ALA A 70 SHEET 3 AA1 3 THR A 96 TYR A 101 -1 O VAL A 98 N VAL A 85 SHEET 1 AA2 4 ALA A 70 ILE A 72 0 SHEET 2 AA2 4 SER A 75 HIS A 87 -1 O TYR A 77 N ALA A 70 SHEET 3 AA2 4 ILE A 118 ASN A 124 1 O LYS A 123 N MET A 82 SHEET 4 AA2 4 VAL A 185 TYR A 188 -1 O TYR A 186 N VAL A 120 SHEET 1 AA3 4 GLY A 107 GLN A 113 0 SHEET 2 AA3 4 SER A 216 GLU A 222 1 O LEU A 220 N ILE A 110 SHEET 3 AA3 4 ALA A 195 ASP A 201 -1 N LEU A 197 O TYR A 219 SHEET 4 AA3 4 VAL A 151 HIS A 154 -1 N HIS A 152 O HIS A 200 SHEET 1 AA4 7 LYS A 283 ILE A 284 0 SHEET 2 AA4 7 THR A 277 VAL A 280 -1 N VAL A 280 O LYS A 283 SHEET 3 AA4 7 ASP A 237 ARG A 245 -1 N GLN A 243 O ALA A 279 SHEET 4 AA4 7 LYS A 294 ASN A 301 1 O ARG A 298 N LEU A 240 SHEET 5 AA4 7 ARG A 344 ASP A 350 -1 O VAL A 347 N PHE A 297 SHEET 6 AA4 7 PHE A 318 THR A 323 -1 N ILE A 321 O ASP A 346 SHEET 7 AA4 7 GLY A 326 LEU A 334 -1 O LEU A 334 N PHE A 318 SHEET 1 AA5 5 LYS A 287 VAL A 290 0 SHEET 2 AA5 5 ILE A 372 VAL A 378 1 O ASP A 377 N LEU A 288 SHEET 3 AA5 5 LYS A 358 ASN A 363 -1 N LEU A 361 O MET A 374 SHEET 4 AA5 5 TYR A 308 LEU A 312 -1 N ARG A 311 O GLN A 362 SHEET 5 AA5 5 LEU A 337 LEU A 339 -1 O LEU A 339 N TYR A 308 SHEET 1 AA6 5 PRO A 424 LEU A 428 0 SHEET 2 AA6 5 LYS A 408 GLN A 418 -1 N ASP A 415 O LEU A 427 SHEET 3 AA6 5 THR A 446 ASN A 453 1 O LYS A 450 N ARG A 410 SHEET 4 AA6 5 MET A 513 LYS A 520 -1 O THR A 515 N LEU A 451 SHEET 5 AA6 5 LYS A 469 PRO A 475 -1 N HIS A 472 O SER A 516 SHEET 1 AA7 4 THR A 506 ALA A 509 0 SHEET 2 AA7 4 HIS A 459 ILE A 463 -1 N HIS A 459 O ALA A 509 SHEET 3 AA7 4 GLY A 526 CYS A 532 -1 O HIS A 531 N HIS A 462 SHEET 4 AA7 4 MET A 543 VAL A 548 -1 O MET A 546 N TYR A 528 LINK ND1 HIS A 154 MN MN A 601 1555 1555 1.86 LINK NE2 HIS A 200 MN MN A 601 1555 1555 1.95 LINK NE2 HIS A 202 CU CU A 602 1555 1555 2.06 LINK ND1 HIS A 459 CU CU A 603 1555 1555 2.08 LINK NE2 HIS A 464 CU CU A 602 1555 1555 2.04 LINK NE2 HIS A 531 CU CU A 602 1555 1555 1.82 LINK SG CYS A 532 CU CU A 603 1555 1555 2.21 LINK NE2 HIS A 533 MN MN A 601 1555 1555 2.18 LINK ND1 HIS A 537 CU CU A 603 1555 1555 2.04 CISPEP 1 LEU A 105 PRO A 106 0 -10.21 CISPEP 2 PRO A 144 PRO A 145 0 1.62 CISPEP 3 ASN A 260 PRO A 261 0 -0.33 CISPEP 4 ASN A 266 PRO A 267 0 -14.59 CISPEP 5 TYR A 540 ASP A 541 0 -4.85 CRYST1 74.590 74.590 230.946 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004330 0.00000 CONECT 907 4138 CONECT 1291 4138 CONECT 1309 4139 CONECT 3370 4140 CONECT 3416 4139 CONECT 3972 4139 CONECT 3978 4140 CONECT 3988 4138 CONECT 4020 4140 CONECT 4138 907 1291 3988 CONECT 4139 1309 3416 3972 CONECT 4140 3370 3978 4020 MASTER 459 0 3 11 32 0 0 6 4756 1 12 43 END