data_8ZAS # _entry.id 8ZAS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ZAS pdb_00008zas 10.2210/pdb8zas/pdb WWPDB D_1300047328 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-04-16 ? 2 'Structure model' 1 1 2025-06-11 ? 3 'Structure model' 1 2 2025-06-25 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ZAS _pdbx_database_status.recvd_initial_deposition_date 2024-04-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lin, X.' 1 0000-0002-8033-0186 'Huang, L.' 2 0000-0002-2121-365X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first e202504107 _citation.page_last e202504107 _citation.title 'From Theophylline to Adenine or preQ 1 : Repurposing a DNA Aptamer Revealed by Crystal Structure Analysis.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202504107 _citation.pdbx_database_id_PubMed 40101171 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lin, X.' 1 ? primary 'Huang, Y.' 2 ? primary 'Huang, J.' 3 ? primary 'Yuan, H.' 4 ? primary 'Luo, Y.' 5 ? primary 'Lu, Z.' 6 ? primary 'Ao, Y.' 7 ? primary 'Huang, J.' 8 ? primary 'Chen, S.B.' 9 ? primary 'Miao, Z.' 10 ? primary 'Huang, L.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*CP*GP*GP*TP*GP*GP*TP*CP*TP*AP*TP*T)-3') ; 4672.017 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*AP*TP*TP*GP*GP*CP*GP*TP*CP*CP*GP*CP*CP*GP*CP*CP*C)-3') ; 5429.492 1 ? ? ? ? 3 non-polymer syn ADENINE 135.127 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DC)(DG)(DG)(DT)(DG)(DG)(DT)(DC)(DT)(DA)(DT)(DT)' GGGCGGTGGTCTATT A ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DT)(DT)(DG)(DG)(DC)(DG)(DT)(DC)(DC)(DG)(DC)(DC)(DG)(DC)(DC)(DC)' CATTGGCGTCCGCCGCCC B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ADENINE ADE 4 'SODIUM ION' NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DT n 1 11 DC n 1 12 DT n 1 13 DA n 1 14 DT n 1 15 DT n 2 1 DC n 2 2 DA n 2 3 DT n 2 4 DT n 2 5 DG n 2 6 DG n 2 7 DC n 2 8 DG n 2 9 DT n 2 10 DC n 2 11 DC n 2 12 DG n 2 13 DC n 2 14 DC n 2 15 DG n 2 16 DC n 2 17 DC n 2 18 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 15 'synthetic construct' ? 32630 ? 2 1 sample 1 18 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 -1 -1 DG DG A . n A 1 2 DG 2 0 0 DG DG A . n A 1 3 DG 3 1 1 DG DG A . n A 1 4 DC 4 2 2 DC DC A . n A 1 5 DG 5 3 3 DG DG A . n A 1 6 DG 6 4 4 DG DG A . n A 1 7 DT 7 5 5 DT DT A . n A 1 8 DG 8 6 6 DG DG A . n A 1 9 DG 9 7 7 DG DG A . n A 1 10 DT 10 8 8 DT DT A . n A 1 11 DC 11 9 9 DC DC A . n A 1 12 DT 12 10 10 DT DT A . n A 1 13 DA 13 11 11 DA DA A . n A 1 14 DT 14 12 12 DT DT A . n A 1 15 DT 15 13 13 DT DT A . n B 2 1 DC 1 14 14 DC DC B . n B 2 2 DA 2 15 15 DA DA B . n B 2 3 DT 3 16 16 DT DT B . n B 2 4 DT 4 17 17 DT DT B . n B 2 5 DG 5 18 18 DG DG B . n B 2 6 DG 6 19 19 DG DG B . n B 2 7 DC 7 20 20 DC DC B . n B 2 8 DG 8 21 21 DG DG B . n B 2 9 DT 9 22 22 DT DT B . n B 2 10 DC 10 23 23 DC DC B . n B 2 11 DC 11 24 24 DC DC B . n B 2 12 DG 12 25 25 DG DG B . n B 2 13 DC 13 26 26 DC DC B . n B 2 14 DC 14 27 27 DC DC B . n B 2 15 DG 15 28 28 DG DG B . n B 2 16 DC 16 29 29 DC DC B . n B 2 17 DC 17 30 30 DC DC B . n B 2 18 DC 18 31 31 DC DC B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ADE _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ADE _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADE 1 101 101 ADE ADE A . D 4 NA 1 102 1 NA NA A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 96.380 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8ZAS _cell.details ? _cell.formula_units_Z ? _cell.length_a 61.366 _cell.length_a_esd ? _cell.length_b 26.929 _cell.length_b_esd ? _cell.length_c 63.532 _cell.length_c_esd ? _cell.volume 104338.003 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8ZAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ZAS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Sodium chloride, 0.02 M Magnesium chloride hexahydrate 0.04 M Sodium cacodylate trihydrate pH 6.0 35% v/v (+/-)-2-Methyl-2,4-pentanediol 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-01-06 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 88.28 _reflns.entry_id 8ZAS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.54 _reflns.d_resolution_low 31.57 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3530 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.34 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.061 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.54 _reflns_shell.d_res_low 2.631 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 319 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.045 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.773 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 87.28 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.065 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 97.29 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8ZAS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.54 _refine.ls_d_res_low 31.57 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3397 _refine.ls_number_reflns_R_free 181 _refine.ls_number_reflns_R_work 3219 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.34 _refine.ls_percent_reflns_R_free 5.32 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2200 _refine.ls_R_factor_R_free 0.2751 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2180 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 8K0W _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 35.3925 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2811 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.54 _refine_hist.d_res_low 31.57 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 680 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 669 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0049 ? 758 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.7078 ? 1165 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0334 ? 130 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0035 ? 34 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 34.6576 ? 322 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.54 _refine_ls_shell.d_res_low 2.67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 181 _refine_ls_shell.number_reflns_R_work 3219 _refine_ls_shell.percent_reflns_obs 95.05 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2172 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.2757 # _struct.entry_id 8ZAS _struct.title 'Crystal structure of Adenine DNA aptamer bound with adenine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ZAS _struct_keywords.text 'Aptamer, DNA, Adenine' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8ZAS 8ZAS ? 1 ? 1 2 PDB 8ZAS 8ZAS ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ZAS A 1 ? 15 ? 8ZAS -1 ? 13 ? -1 13 2 2 8ZAS B 1 ? 18 ? 8ZAS 14 ? 31 ? 14 31 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2530 ? 1 MORE -24 ? 1 'SSA (A^2)' 5600 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 O6 ? ? ? 1_555 D NA . NA ? ? A DG 4 A NA 102 1_555 ? ? ? ? ? ? ? 2.816 ? ? metalc2 metalc ? ? A DT 7 O4 ? ? ? 1_555 D NA . NA ? ? A DT 5 A NA 102 1_555 ? ? ? ? ? ? ? 2.922 ? ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 B DG 12 O6 ? ? A NA 102 B DG 25 1_555 ? ? ? ? ? ? ? 2.916 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 18 N3 ? ? A DG -1 B DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 18 O2 ? ? A DG -1 B DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 18 N4 ? ? A DG -1 B DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 17 N3 ? ? A DG 0 B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 17 O2 ? ? A DG 0 B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 17 N4 ? ? A DG 0 B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 16 N3 ? ? A DG 1 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 16 O2 ? ? A DG 1 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 16 N4 ? ? A DG 1 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 15 N1 ? ? A DC 2 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 15 O6 ? ? A DC 2 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 15 N2 ? ? A DC 2 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 3 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 3 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 3 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 13 N3 ? ? A DG 4 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 13 O2 ? ? A DG 4 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 13 N4 ? ? A DG 4 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DG 12 O6 ? ? A DT 5 B DG 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A DT 7 O2 ? ? ? 1_555 B DG 12 N1 ? ? A DT 5 B DG 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A DG 8 N7 ? ? ? 1_555 B DG 6 N1 ? ? A DG 6 B DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DG 6 N2 ? ? A DG 6 B DG 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog23 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 6 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 6 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 6 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 9 N7 ? ? ? 1_555 B DG 5 N1 ? ? A DG 7 B DG 18 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog27 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DG 5 N2 ? ? A DG 7 B DG 18 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog28 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 7 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 7 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 7 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 10 O2 ? ? ? 1_555 A DA 13 N6 ? ? A DT 8 A DA 11 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog32 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 11 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 11 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 12 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 12 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DC 1 N3 ? ? A DT 13 B DC 14 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog40 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DC 1 N4 ? ? A DT 13 B DC 14 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 6 ? A DG 4 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O4 ? A DT 7 ? A DT 5 ? 1_555 77.4 ? 2 O6 ? A DG 6 ? A DG 4 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O6 ? B DG 12 ? B DG 25 ? 1_555 74.0 ? 3 O4 ? A DT 7 ? A DT 5 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O6 ? B DG 12 ? B DG 25 ? 1_555 69.7 ? # _pdbx_entry_details.entry_id 8ZAS _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 111.23 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.93 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 13.1155985865 10.5224086566 16.2730033828 1.01786300304 ? 0.133156461231 ? 0.0514031571099 ? 1.27405832641 ? -0.117816747657 ? 0.940494635844 ? 4.13727406793 ? -0.475856679678 ? -1.94919683087 ? 0.651446019558 ? -1.17880825866 ? 1.96806228121 ? 0.198314853069 ? -0.734139498655 ? 0.980136819288 ? 0.366160903346 ? 0.340830454355 ? -0.27012700621 ? -0.639391581562 ? -0.246549230655 ? -0.453840810804 ? 2 'X-RAY DIFFRACTION' ? refined 8.11351149684 11.3618919438 21.5157103515 1.1137864891 ? 0.666408935474 ? 0.623172868795 ? 0.59570062094 ? 0.746550913406 ? 2.28859798099 ? 3.29670544158 ? 2.37555504907 ? 5.01291278467 ? 3.89709851605 ? 3.75704445994 ? 7.6281104402 ? -1.1799949744 ? 0.1935617077 ? 3.32841523792 ? -1.34069174104 ? -1.05467247424 ? 3.41779959264 ? -0.0936493201715 ? 0.403837872129 ? 1.9441182923 ? 3 'X-RAY DIFFRACTION' ? refined 1.57214040063 4.96002677711 24.5153276842 1.00020594404 ? -0.0138232838617 ? 0.0939871434019 ? 0.879833434285 ? 0.0344167647868 ? 0.715942481026 ? 5.64737220192 ? -2.09693597636 ? -1.61708477673 ? 5.69289637051 ? 2.4958963061 ? 1.57348388563 ? -1.62932007523 ? 0.739589550169 ? -0.34462585761 ? 0.181120570091 ? 1.0832069656 ? 0.0274219351773 ? 1.39389280924 ? 0.191515212589 ? 0.592096431637 ? 4 'X-RAY DIFFRACTION' ? refined 5.86385150584 15.7608360069 14.8429432516 1.15953632453 ? 0.0204484438726 ? 0.0420442357334 ? 1.26326396883 ? -0.086026561113 ? 1.11526529998 ? 0.36604770484 ? -0.899690721086 ? -0.323065291847 ? 2.27607972795 ? -0.293954473747 ? 1.44477467466 ? -0.113387640616 ? -0.466941213592 ? 0.30927453475 ? -0.268158650205 ? -0.16571573146 ? -0.0690125303389 ? -0.210325660668 ? -0.366027785245 ? 0.174013118121 ? 5 'X-RAY DIFFRACTION' ? refined 21.1989238644 7.00301722298 9.80019612652 1.0567897081 ? -0.00752701839236 ? 0.0622494943352 ? 1.19357766416 ? -0.0613266519686 ? 1.05385410204 ? 2.94470476755 ? 0.27312413511 ? -0.599852945223 ? 1.24468841203 ? 0.21655541489 ? 4.68164056851 ? -0.397199876894 ? -0.264983248049 ? 0.660468700428 ? 0.0546878669913 ? 0.0633737523291 ? -0.087689208974 ? 0.112745319965 ? 0.831879891683 ? 0.335087403763 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A -1 ? A ? A 13 ? ? ;chain 'A' and (resid -1 through 13 ) ; 2 'X-RAY DIFFRACTION' 2 B ? A 101 ? B ? A 101 ? ? ;chain 'A' and (resid 101 through 101 ) ; 3 'X-RAY DIFFRACTION' 3 C ? B 14 ? C ? B 18 ? ? ;chain 'B' and (resid 14 through 18 ) ; 4 'X-RAY DIFFRACTION' 4 C ? B 19 ? C ? B 23 ? ? ;chain 'B' and (resid 19 through 23 ) ; 5 'X-RAY DIFFRACTION' 5 C ? B 24 ? C ? B 31 ? ? ;chain 'B' and (resid 24 through 31 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADE N9 N Y N 1 ADE C8 C Y N 2 ADE N7 N Y N 3 ADE C5 C Y N 4 ADE C6 C Y N 5 ADE N6 N N N 6 ADE N1 N Y N 7 ADE C2 C Y N 8 ADE N3 N Y N 9 ADE C4 C Y N 10 ADE HN9 H N N 11 ADE H8 H N N 12 ADE HN61 H N N 13 ADE HN62 H N N 14 ADE H2 H N N 15 DA OP3 O N N 16 DA P P N N 17 DA OP1 O N N 18 DA OP2 O N N 19 DA "O5'" O N N 20 DA "C5'" C N N 21 DA "C4'" C N R 22 DA "O4'" O N N 23 DA "C3'" C N S 24 DA "O3'" O N N 25 DA "C2'" C N N 26 DA "C1'" C N R 27 DA N9 N Y N 28 DA C8 C Y N 29 DA N7 N Y N 30 DA C5 C Y N 31 DA C6 C Y N 32 DA N6 N N N 33 DA N1 N Y N 34 DA C2 C Y N 35 DA N3 N Y N 36 DA C4 C Y N 37 DA HOP3 H N N 38 DA HOP2 H N N 39 DA "H5'" H N N 40 DA "H5''" H N N 41 DA "H4'" H N N 42 DA "H3'" H N N 43 DA "HO3'" H N N 44 DA "H2'" H N N 45 DA "H2''" H N N 46 DA "H1'" H N N 47 DA H8 H N N 48 DA H61 H N N 49 DA H62 H N N 50 DA H2 H N N 51 DC OP3 O N N 52 DC P P N N 53 DC OP1 O N N 54 DC OP2 O N N 55 DC "O5'" O N N 56 DC "C5'" C N N 57 DC "C4'" C N R 58 DC "O4'" O N N 59 DC "C3'" C N S 60 DC "O3'" O N N 61 DC "C2'" C N N 62 DC "C1'" C N R 63 DC N1 N N N 64 DC C2 C N N 65 DC O2 O N N 66 DC N3 N N N 67 DC C4 C N N 68 DC N4 N N N 69 DC C5 C N N 70 DC C6 C N N 71 DC HOP3 H N N 72 DC HOP2 H N N 73 DC "H5'" H N N 74 DC "H5''" H N N 75 DC "H4'" H N N 76 DC "H3'" H N N 77 DC "HO3'" H N N 78 DC "H2'" H N N 79 DC "H2''" H N N 80 DC "H1'" H N N 81 DC H41 H N N 82 DC H42 H N N 83 DC H5 H N N 84 DC H6 H N N 85 DG OP3 O N N 86 DG P P N N 87 DG OP1 O N N 88 DG OP2 O N N 89 DG "O5'" O N N 90 DG "C5'" C N N 91 DG "C4'" C N R 92 DG "O4'" O N N 93 DG "C3'" C N S 94 DG "O3'" O N N 95 DG "C2'" C N N 96 DG "C1'" C N R 97 DG N9 N Y N 98 DG C8 C Y N 99 DG N7 N Y N 100 DG C5 C Y N 101 DG C6 C N N 102 DG O6 O N N 103 DG N1 N N N 104 DG C2 C N N 105 DG N2 N N N 106 DG N3 N N N 107 DG C4 C Y N 108 DG HOP3 H N N 109 DG HOP2 H N N 110 DG "H5'" H N N 111 DG "H5''" H N N 112 DG "H4'" H N N 113 DG "H3'" H N N 114 DG "HO3'" H N N 115 DG "H2'" H N N 116 DG "H2''" H N N 117 DG "H1'" H N N 118 DG H8 H N N 119 DG H1 H N N 120 DG H21 H N N 121 DG H22 H N N 122 DT OP3 O N N 123 DT P P N N 124 DT OP1 O N N 125 DT OP2 O N N 126 DT "O5'" O N N 127 DT "C5'" C N N 128 DT "C4'" C N R 129 DT "O4'" O N N 130 DT "C3'" C N S 131 DT "O3'" O N N 132 DT "C2'" C N N 133 DT "C1'" C N R 134 DT N1 N N N 135 DT C2 C N N 136 DT O2 O N N 137 DT N3 N N N 138 DT C4 C N N 139 DT O4 O N N 140 DT C5 C N N 141 DT C7 C N N 142 DT C6 C N N 143 DT HOP3 H N N 144 DT HOP2 H N N 145 DT "H5'" H N N 146 DT "H5''" H N N 147 DT "H4'" H N N 148 DT "H3'" H N N 149 DT "HO3'" H N N 150 DT "H2'" H N N 151 DT "H2''" H N N 152 DT "H1'" H N N 153 DT H3 H N N 154 DT H71 H N N 155 DT H72 H N N 156 DT H73 H N N 157 DT H6 H N N 158 NA NA NA N N 159 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADE N9 C8 sing Y N 1 ADE N9 C4 sing Y N 2 ADE N9 HN9 sing N N 3 ADE C8 N7 doub Y N 4 ADE C8 H8 sing N N 5 ADE N7 C5 sing Y N 6 ADE C5 C6 sing Y N 7 ADE C5 C4 doub Y N 8 ADE C6 N6 sing N N 9 ADE C6 N1 doub Y N 10 ADE N6 HN61 sing N N 11 ADE N6 HN62 sing N N 12 ADE N1 C2 sing Y N 13 ADE C2 N3 doub Y N 14 ADE C2 H2 sing N N 15 ADE N3 C4 sing Y N 16 DA OP3 P sing N N 17 DA OP3 HOP3 sing N N 18 DA P OP1 doub N N 19 DA P OP2 sing N N 20 DA P "O5'" sing N N 21 DA OP2 HOP2 sing N N 22 DA "O5'" "C5'" sing N N 23 DA "C5'" "C4'" sing N N 24 DA "C5'" "H5'" sing N N 25 DA "C5'" "H5''" sing N N 26 DA "C4'" "O4'" sing N N 27 DA "C4'" "C3'" sing N N 28 DA "C4'" "H4'" sing N N 29 DA "O4'" "C1'" sing N N 30 DA "C3'" "O3'" sing N N 31 DA "C3'" "C2'" sing N N 32 DA "C3'" "H3'" sing N N 33 DA "O3'" "HO3'" sing N N 34 DA "C2'" "C1'" sing N N 35 DA "C2'" "H2'" sing N N 36 DA "C2'" "H2''" sing N N 37 DA "C1'" N9 sing N N 38 DA "C1'" "H1'" sing N N 39 DA N9 C8 sing Y N 40 DA N9 C4 sing Y N 41 DA C8 N7 doub Y N 42 DA C8 H8 sing N N 43 DA N7 C5 sing Y N 44 DA C5 C6 sing Y N 45 DA C5 C4 doub Y N 46 DA C6 N6 sing N N 47 DA C6 N1 doub Y N 48 DA N6 H61 sing N N 49 DA N6 H62 sing N N 50 DA N1 C2 sing Y N 51 DA C2 N3 doub Y N 52 DA C2 H2 sing N N 53 DA N3 C4 sing Y N 54 DC OP3 P sing N N 55 DC OP3 HOP3 sing N N 56 DC P OP1 doub N N 57 DC P OP2 sing N N 58 DC P "O5'" sing N N 59 DC OP2 HOP2 sing N N 60 DC "O5'" "C5'" sing N N 61 DC "C5'" "C4'" sing N N 62 DC "C5'" "H5'" sing N N 63 DC "C5'" "H5''" sing N N 64 DC "C4'" "O4'" sing N N 65 DC "C4'" "C3'" sing N N 66 DC "C4'" "H4'" sing N N 67 DC "O4'" "C1'" sing N N 68 DC "C3'" "O3'" sing N N 69 DC "C3'" "C2'" sing N N 70 DC "C3'" "H3'" sing N N 71 DC "O3'" "HO3'" sing N N 72 DC "C2'" "C1'" sing N N 73 DC "C2'" "H2'" sing N N 74 DC "C2'" "H2''" sing N N 75 DC "C1'" N1 sing N N 76 DC "C1'" "H1'" sing N N 77 DC N1 C2 sing N N 78 DC N1 C6 sing N N 79 DC C2 O2 doub N N 80 DC C2 N3 sing N N 81 DC N3 C4 doub N N 82 DC C4 N4 sing N N 83 DC C4 C5 sing N N 84 DC N4 H41 sing N N 85 DC N4 H42 sing N N 86 DC C5 C6 doub N N 87 DC C5 H5 sing N N 88 DC C6 H6 sing N N 89 DG OP3 P sing N N 90 DG OP3 HOP3 sing N N 91 DG P OP1 doub N N 92 DG P OP2 sing N N 93 DG P "O5'" sing N N 94 DG OP2 HOP2 sing N N 95 DG "O5'" "C5'" sing N N 96 DG "C5'" "C4'" sing N N 97 DG "C5'" "H5'" sing N N 98 DG "C5'" "H5''" sing N N 99 DG "C4'" "O4'" sing N N 100 DG "C4'" "C3'" sing N N 101 DG "C4'" "H4'" sing N N 102 DG "O4'" "C1'" sing N N 103 DG "C3'" "O3'" sing N N 104 DG "C3'" "C2'" sing N N 105 DG "C3'" "H3'" sing N N 106 DG "O3'" "HO3'" sing N N 107 DG "C2'" "C1'" sing N N 108 DG "C2'" "H2'" sing N N 109 DG "C2'" "H2''" sing N N 110 DG "C1'" N9 sing N N 111 DG "C1'" "H1'" sing N N 112 DG N9 C8 sing Y N 113 DG N9 C4 sing Y N 114 DG C8 N7 doub Y N 115 DG C8 H8 sing N N 116 DG N7 C5 sing Y N 117 DG C5 C6 sing N N 118 DG C5 C4 doub Y N 119 DG C6 O6 doub N N 120 DG C6 N1 sing N N 121 DG N1 C2 sing N N 122 DG N1 H1 sing N N 123 DG C2 N2 sing N N 124 DG C2 N3 doub N N 125 DG N2 H21 sing N N 126 DG N2 H22 sing N N 127 DG N3 C4 sing N N 128 DT OP3 P sing N N 129 DT OP3 HOP3 sing N N 130 DT P OP1 doub N N 131 DT P OP2 sing N N 132 DT P "O5'" sing N N 133 DT OP2 HOP2 sing N N 134 DT "O5'" "C5'" sing N N 135 DT "C5'" "C4'" sing N N 136 DT "C5'" "H5'" sing N N 137 DT "C5'" "H5''" sing N N 138 DT "C4'" "O4'" sing N N 139 DT "C4'" "C3'" sing N N 140 DT "C4'" "H4'" sing N N 141 DT "O4'" "C1'" sing N N 142 DT "C3'" "O3'" sing N N 143 DT "C3'" "C2'" sing N N 144 DT "C3'" "H3'" sing N N 145 DT "O3'" "HO3'" sing N N 146 DT "C2'" "C1'" sing N N 147 DT "C2'" "H2'" sing N N 148 DT "C2'" "H2''" sing N N 149 DT "C1'" N1 sing N N 150 DT "C1'" "H1'" sing N N 151 DT N1 C2 sing N N 152 DT N1 C6 sing N N 153 DT C2 O2 doub N N 154 DT C2 N3 sing N N 155 DT N3 C4 sing N N 156 DT N3 H3 sing N N 157 DT C4 O4 doub N N 158 DT C4 C5 sing N N 159 DT C5 C7 sing N N 160 DT C5 C6 doub N N 161 DT C7 H71 sing N N 162 DT C7 H72 sing N N 163 DT C7 H73 sing N N 164 DT C6 H6 sing N N 165 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8ZAS 'double helix' 8ZAS 'b-form double helix' 8ZAS 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 18 1_555 -0.211 -0.113 -0.043 -0.303 -2.754 1.028 1 A_DG-1:DC31_B A -1 ? B 31 ? 19 1 1 A DG 2 1_555 B DC 17 1_555 -0.189 -0.140 -0.138 -2.469 -4.565 -0.387 2 A_DG0:DC30_B A 0 ? B 30 ? 19 1 1 A DG 3 1_555 B DC 16 1_555 -0.159 -0.090 0.224 3.017 -5.885 1.212 3 A_DG1:DC29_B A 1 ? B 29 ? 19 1 1 A DC 4 1_555 B DG 15 1_555 0.110 -0.195 0.633 -2.411 -13.672 -5.407 4 A_DC2:DG28_B A 2 ? B 28 ? 19 1 1 A DG 5 1_555 B DC 14 1_555 -0.220 -0.151 0.569 0.862 2.506 2.365 5 A_DG3:DC27_B A 3 ? B 27 ? 19 1 1 A DG 6 1_555 B DC 13 1_555 -0.193 -0.105 0.333 1.789 -0.422 -0.716 6 A_DG4:DC26_B A 4 ? B 26 ? 19 1 1 A DT 7 1_555 B DG 12 1_555 1.708 -0.475 -0.209 2.134 -0.889 -3.889 7 A_DT5:DG25_B A 5 ? B 25 ? 28 1 1 A DG 8 1_555 B DC 11 1_555 -0.095 -0.207 0.826 8.501 -12.224 -2.838 8 A_DG6:DC24_B A 6 ? B 24 ? 19 1 1 A DG 9 1_555 B DC 10 1_555 -0.142 -0.279 0.786 2.034 -12.815 -2.387 9 A_DG7:DC23_B A 7 ? B 23 ? 19 1 1 A DC 11 1_555 B DG 8 1_555 0.197 -0.122 0.448 -6.672 -2.720 1.511 10 A_DC9:DG21_B A 9 ? B 21 ? 19 1 1 A DA 13 1_555 B DT 3 1_555 -0.001 -0.282 -0.934 -9.254 -10.616 4.836 11 A_DA11:DT16_B A 11 ? B 16 ? 20 1 1 A DT 14 1_555 B DA 2 1_555 -0.035 -0.257 -0.839 -2.106 -12.394 10.648 12 A_DT12:DA15_B A 12 ? B 15 ? 20 1 1 A DT 15 1_555 B DC 1 1_555 -0.607 -1.609 -0.605 -3.097 -14.579 9.623 13 A_DT13:DC14_B A 13 ? B 14 ? 18 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 18 1_555 A DG 2 1_555 B DC 17 1_555 -0.684 -0.689 3.241 -0.806 2.687 34.765 -1.552 1.020 3.195 4.489 1.347 34.875 1 AA_DG-1DG0:DC30DC31_BB A -1 ? B 31 ? A 0 ? B 30 ? 1 A DG 2 1_555 B DC 17 1_555 A DG 3 1_555 B DC 16 1_555 1.075 0.522 3.169 0.513 0.939 33.566 0.753 -1.778 3.198 1.625 -0.888 33.583 2 AA_DG0DG1:DC29DC30_BB A 0 ? B 30 ? A 1 ? B 29 ? 1 A DG 3 1_555 B DC 16 1_555 A DC 4 1_555 B DG 15 1_555 -1.230 0.095 3.456 -5.737 0.492 39.777 0.077 1.085 3.592 0.719 8.378 40.175 3 AA_DG1DC2:DG28DC29_BB A 1 ? B 29 ? A 2 ? B 28 ? 1 A DC 4 1_555 B DG 15 1_555 A DG 5 1_555 B DC 14 1_555 0.919 1.065 3.309 2.268 -8.473 37.978 2.610 -1.108 3.058 -12.811 -3.430 38.942 4 AA_DC2DG3:DC27DG28_BB A 2 ? B 28 ? A 3 ? B 27 ? 1 A DG 5 1_555 B DC 14 1_555 A DG 6 1_555 B DC 13 1_555 -0.713 0.004 3.483 -2.205 4.048 34.757 -0.645 0.829 3.498 6.739 3.671 35.052 5 AA_DG3DG4:DC26DC27_BB A 3 ? B 27 ? A 4 ? B 26 ? 1 A DG 6 1_555 B DC 13 1_555 A DT 7 1_555 B DG 12 1_555 0.311 -0.633 3.257 6.192 3.035 37.729 -1.343 0.299 3.208 4.646 -9.479 38.332 6 AA_DG4DT5:DG25DC26_BB A 4 ? B 26 ? A 5 ? B 25 ? 1 A DT 7 1_555 B DG 12 1_555 A DG 8 1_555 B DC 11 1_555 -0.104 -0.049 2.907 -5.329 12.321 29.261 -2.058 -0.663 2.652 22.929 9.917 32.132 7 AA_DT5DG6:DC24DG25_BB A 5 ? B 25 ? A 6 ? B 24 ? 1 A DG 8 1_555 B DC 11 1_555 A DG 9 1_555 B DC 10 1_555 0.184 -1.353 3.262 -1.926 2.325 32.849 -2.771 -0.645 3.146 4.101 3.396 32.984 8 AA_DG6DG7:DC23DC24_BB A 6 ? B 24 ? A 7 ? B 23 ? 1 A DG 9 1_555 B DC 10 1_555 A DC 11 1_555 B DG 8 1_555 0.216 -1.270 6.722 4.606 -6.219 68.685 -0.648 0.159 6.802 -5.494 -4.069 69.067 9 AA_DG7DC9:DG21DC23_BB A 7 ? B 23 ? A 9 ? B 21 ? 1 A DC 11 1_555 B DG 8 1_555 A DA 13 1_555 B DT 3 1_555 5.855 -0.161 4.345 -1.725 24.937 109.604 -0.489 -3.569 4.210 15.141 1.047 111.508 10 AA_DC9DA11:DT16DG21_BB A 9 ? B 21 ? A 11 ? B 16 ? 1 A DA 13 1_555 B DT 3 1_555 A DT 14 1_555 B DA 2 1_555 -0.296 0.101 3.085 -0.020 0.201 33.732 0.143 0.507 3.085 0.346 0.035 33.733 11 AA_DA11DT12:DA15DT16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A DT 14 1_555 B DA 2 1_555 A DT 15 1_555 B DC 1 1_555 -0.295 1.043 3.311 -3.421 -2.935 38.092 1.956 0.019 3.238 -4.478 5.219 38.348 12 AA_DT12DT13:DC14DA15_BB A 12 ? B 15 ? A 13 ? B 14 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8K0W _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8ZAS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.016296 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001822 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037135 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015838 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #