HEADER HYDROLASE 25-APR-24 8ZAX TITLE CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE FROM LACTOBACILLUS TITLE 2 FERMENTUM WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: SDR FAMILY OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMOSILACTOBACILLUS FERMENTUM; SOURCE 3 ORGANISM_TAXID: 1613; SOURCE 4 GENE: GC247_10055; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SHORT-CHAIN DEHYDROGENASE, LACTOBACILLUS FERMENTUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.WANG,L.CONG,H.L.WEI,W.D.LIU,S.YOU REVDAT 1 30-OCT-24 8ZAX 0 JRNL AUTH Q.WANG,L.CONG,J.GUO,J.WANG,X.HAN,W.ZHANG,W.LIU,H.WEI,S.YOU JRNL TITL STRUCTURE-GUIDED ENGINEERING OF A SHORT-CHAIN DEHYDROGENASE JRNL TITL 2 LFSDR1 FOR EFFICIENT BIOSYNTHESIS OF JRNL TITL 3 (R)-9-(2-HYDROXYPROPYL)ADENINE, THE KEY INTERMEDIATE OF JRNL TITL 4 TENOFOVIR JRNL REF ADV.SYNTH.CATAL. 2024 JRNL REFN ESSN 1615-4169 JRNL DOI 10.1002/ADSC.202400752 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 67536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4701 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 248 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.016 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3842 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3640 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5206 ; 1.007 ; 1.816 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8404 ; 0.343 ; 1.757 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 8.323 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ; 8.760 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 644 ;14.114 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4450 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1966 ; 1.805 ; 1.660 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1966 ; 1.805 ; 1.660 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2454 ; 2.481 ; 2.984 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2455 ; 2.480 ; 2.983 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1876 ; 3.037 ; 2.076 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1874 ; 3.003 ; 2.073 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2753 ; 4.458 ; 3.679 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 17470 ; 6.145 ;22.360 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 16981 ; 5.905 ;21.740 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8ZAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1300047329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 1.20400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 0.05M CALCIUM REMARK 280 CHLORIDE, 43% PEG 200, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.68550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.68550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.91350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.40900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.91350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.40900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.68550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.91350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.40900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.68550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.91350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.40900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.68550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 554 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 564 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 245 O HOH B 401 1.71 REMARK 500 O HOH A 532 O HOH A 555 1.80 REMARK 500 OE1 GLU A 129 O HOH A 401 1.83 REMARK 500 O HOH A 550 O HOH A 573 1.83 REMARK 500 O HOH A 566 O HOH A 585 1.84 REMARK 500 O HOH A 549 O HOH A 571 1.84 REMARK 500 O HOH A 533 O HOH A 582 1.84 REMARK 500 O HOH A 610 O HOH B 586 1.85 REMARK 500 O HOH A 581 O HOH A 607 1.91 REMARK 500 O HOH A 471 O HOH A 495 1.93 REMARK 500 CA GLY B 80 O HOH B 437 1.93 REMARK 500 O HOH B 573 O HOH B 586 1.93 REMARK 500 O HOH A 551 O HOH A 569 1.94 REMARK 500 O HOH A 592 O HOH B 609 1.94 REMARK 500 O HOH B 558 O HOH B 596 1.94 REMARK 500 O HOH A 500 O HOH A 610 1.95 REMARK 500 O HOH B 487 O HOH B 609 1.98 REMARK 500 O HOH A 544 O HOH A 574 1.98 REMARK 500 O HOH B 539 O HOH B 558 1.98 REMARK 500 O HOH A 570 O HOH A 589 2.00 REMARK 500 O HOH A 459 O HOH A 539 2.01 REMARK 500 O HOH A 562 O HOH A 589 2.01 REMARK 500 O HOH A 566 O HOH A 577 2.02 REMARK 500 OD1 ASP A 193 O HOH A 402 2.02 REMARK 500 O HOH B 545 O HOH B 571 2.02 REMARK 500 O HOH A 591 O HOH A 593 2.04 REMARK 500 O HOH A 470 O HOH A 507 2.05 REMARK 500 O HOH A 504 O HOH A 568 2.07 REMARK 500 SD MET B 117 O HOH B 566 2.08 REMARK 500 O HOH A 537 O HOH A 565 2.09 REMARK 500 O HOH A 567 O HOH A 578 2.10 REMARK 500 O HOH B 570 O HOH B 598 2.10 REMARK 500 O HOH A 568 O HOH A 592 2.11 REMARK 500 OG SER A 138 O HOH A 403 2.11 REMARK 500 O HOH B 574 O HOH B 612 2.12 REMARK 500 O HOH A 453 O HOH A 613 2.13 REMARK 500 O HOH A 412 O HOH A 572 2.14 REMARK 500 O HOH A 533 O HOH A 570 2.14 REMARK 500 OH TYR A 152 O2D NAP A 301 2.15 REMARK 500 O2X NAP A 301 O HOH A 404 2.16 REMARK 500 OH TYR B 152 O2D NAP B 301 2.17 REMARK 500 O HOH A 479 O HOH A 606 2.17 REMARK 500 O HOH B 552 O HOH B 607 2.18 REMARK 500 O HOH A 436 O HOH A 547 2.18 REMARK 500 O HOH A 579 O HOH A 600 2.18 REMARK 500 O HOH B 531 O HOH B 559 2.19 REMARK 500 O HOH A 412 O HOH A 564 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 466 O HOH B 553 8555 2.01 REMARK 500 O HOH A 587 O HOH B 591 5545 2.09 REMARK 500 O HOH A 544 O HOH B 540 5545 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 113 -60.61 -108.79 REMARK 500 GLU A 129 -69.58 83.26 REMARK 500 SER A 138 -129.12 -96.40 REMARK 500 LYS A 173 57.44 -101.94 REMARK 500 GLN B 81 -138.93 -156.62 REMARK 500 GLU B 129 -46.63 75.15 REMARK 500 SER B 138 -131.31 -94.67 REMARK 500 LYS B 173 45.84 -102.92 REMARK 500 ALA B 230 50.90 -105.57 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8ZAX A 1 247 UNP A0A843R2C6_LIMFE DBREF2 8ZAX A A0A843R2C6 1 247 DBREF1 8ZAX B 1 247 UNP A0A843R2C6_LIMFE DBREF2 8ZAX B A0A843R2C6 1 247 SEQADV 8ZAX ASP A 146 UNP A0A843R2C GLY 146 ENGINEERED MUTATION SEQADV 8ZAX ASP B 146 UNP A0A843R2C GLY 146 ENGINEERED MUTATION SEQRES 1 A 247 MET GLY GLN PHE ASP ASN LYS VAL ALA LEU VAL THR GLY SEQRES 2 A 247 GLY THR LYS GLY ILE GLY LEU ALA ILE ALA GLU LEU PHE SEQRES 3 A 247 LEU LYS GLU GLY ALA LYS GLY VAL ALA PHE THR GLY ARG SEQRES 4 A 247 HIS GLU ASP GLU GLY LYS ALA VAL GLN GLU ARG LEU GLY SEQRES 5 A 247 GLU ARG SER LEU PHE ILE THR GLN ASP VAL SER LYS GLU SEQRES 6 A 247 GLU ASP TRP GLN ASN ALA THR LYS ALA VAL VAL GLU LYS SEQRES 7 A 247 PHE GLY GLN LEU ASP ALA ILE VAL ASN ASN ALA GLY ILE SEQRES 8 A 247 GLY THR PRO LEU GLY ILE GLU GLU MET THR LEU ASP HIS SEQRES 9 A 247 TRP ASN ARG GLU ILE ALA ILE ASP LEU THR GLY THR MET SEQRES 10 A 247 LEU GLY CYS LYS TYR GLY VAL LYS ALA MET LYS GLU HIS SEQRES 11 A 247 GLY GLY ALA ILE VAL ASN ILE SER SER ILE GLU GLY MET SEQRES 12 A 247 ILE GLY ASP PRO THR VAL PRO ALA TYR ASN ALA ALA LYS SEQRES 13 A 247 GLY GLY VAL ARG LEU LEU THR LYS SER VAL ALA LEU GLU SEQRES 14 A 247 CYS ALA GLU LYS GLY TYR ALA ILE ARG VAL ASN SER ILE SEQRES 15 A 247 TYR PRO GLY VAL ILE ALA THR PRO LEU ILE ASP HIS LEU SEQRES 16 A 247 ASP ASP ALA THR LYS GLN PHE TYR ILE ASP LYS HIS PRO SEQRES 17 A 247 MET GLY ARG LEU GLY LYS PRO GLU GLU VAL ALA LYS MET SEQRES 18 A 247 ALA VAL PHE VAL ALA SER ASP GLY ALA SER PHE SER THR SEQRES 19 A 247 GLY SER GLU PHE VAL VAL ASP GLY GLY TYR THR ALA GLN SEQRES 1 B 247 MET GLY GLN PHE ASP ASN LYS VAL ALA LEU VAL THR GLY SEQRES 2 B 247 GLY THR LYS GLY ILE GLY LEU ALA ILE ALA GLU LEU PHE SEQRES 3 B 247 LEU LYS GLU GLY ALA LYS GLY VAL ALA PHE THR GLY ARG SEQRES 4 B 247 HIS GLU ASP GLU GLY LYS ALA VAL GLN GLU ARG LEU GLY SEQRES 5 B 247 GLU ARG SER LEU PHE ILE THR GLN ASP VAL SER LYS GLU SEQRES 6 B 247 GLU ASP TRP GLN ASN ALA THR LYS ALA VAL VAL GLU LYS SEQRES 7 B 247 PHE GLY GLN LEU ASP ALA ILE VAL ASN ASN ALA GLY ILE SEQRES 8 B 247 GLY THR PRO LEU GLY ILE GLU GLU MET THR LEU ASP HIS SEQRES 9 B 247 TRP ASN ARG GLU ILE ALA ILE ASP LEU THR GLY THR MET SEQRES 10 B 247 LEU GLY CYS LYS TYR GLY VAL LYS ALA MET LYS GLU HIS SEQRES 11 B 247 GLY GLY ALA ILE VAL ASN ILE SER SER ILE GLU GLY MET SEQRES 12 B 247 ILE GLY ASP PRO THR VAL PRO ALA TYR ASN ALA ALA LYS SEQRES 13 B 247 GLY GLY VAL ARG LEU LEU THR LYS SER VAL ALA LEU GLU SEQRES 14 B 247 CYS ALA GLU LYS GLY TYR ALA ILE ARG VAL ASN SER ILE SEQRES 15 B 247 TYR PRO GLY VAL ILE ALA THR PRO LEU ILE ASP HIS LEU SEQRES 16 B 247 ASP ASP ALA THR LYS GLN PHE TYR ILE ASP LYS HIS PRO SEQRES 17 B 247 MET GLY ARG LEU GLY LYS PRO GLU GLU VAL ALA LYS MET SEQRES 18 B 247 ALA VAL PHE VAL ALA SER ASP GLY ALA SER PHE SER THR SEQRES 19 B 247 GLY SER GLU PHE VAL VAL ASP GLY GLY TYR THR ALA GLN HET NAP A 301 48 HET NAP B 301 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *427(H2 O) HELIX 1 AA1 LYS A 16 GLU A 29 1 14 HELIX 2 AA2 HIS A 40 GLY A 52 1 13 HELIX 3 AA3 LYS A 64 PHE A 79 1 16 HELIX 4 AA4 THR A 101 LEU A 113 1 13 HELIX 5 AA5 LEU A 113 LYS A 128 1 16 HELIX 6 AA6 SER A 139 MET A 143 5 5 HELIX 7 AA7 VAL A 149 LYS A 173 1 25 HELIX 8 AA8 THR A 189 HIS A 194 1 6 HELIX 9 AA9 ASP A 196 ASP A 205 1 10 HELIX 10 AB1 LYS A 214 SER A 227 1 14 HELIX 11 AB2 ASP A 228 SER A 231 5 4 HELIX 12 AB3 GLY A 243 GLN A 247 5 5 HELIX 13 AB4 LYS B 16 LYS B 28 1 13 HELIX 14 AB5 HIS B 40 GLY B 52 1 13 HELIX 15 AB6 LYS B 64 PHE B 79 1 16 HELIX 16 AB7 THR B 101 LEU B 113 1 13 HELIX 17 AB8 LEU B 113 LYS B 128 1 16 HELIX 18 AB9 SER B 139 MET B 143 5 5 HELIX 19 AC1 VAL B 149 LYS B 173 1 25 HELIX 20 AC2 THR B 189 HIS B 194 1 6 HELIX 21 AC3 ASP B 196 ASP B 205 1 10 HELIX 22 AC4 LYS B 214 SER B 227 1 14 HELIX 23 AC5 ASP B 228 SER B 231 5 4 SHEET 1 AA1 7 SER A 55 THR A 59 0 SHEET 2 AA1 7 GLY A 33 GLY A 38 1 N PHE A 36 O LEU A 56 SHEET 3 AA1 7 VAL A 8 VAL A 11 1 N ALA A 9 O ALA A 35 SHEET 4 AA1 7 ALA A 84 ASN A 87 1 O VAL A 86 N LEU A 10 SHEET 5 AA1 7 GLY A 132 ILE A 137 1 O VAL A 135 N ILE A 85 SHEET 6 AA1 7 ILE A 177 PRO A 184 1 O ASN A 180 N ASN A 136 SHEET 7 AA1 7 GLU A 237 VAL A 240 1 O PHE A 238 N SER A 181 SHEET 1 AA2 7 SER B 55 THR B 59 0 SHEET 2 AA2 7 GLY B 33 GLY B 38 1 N PHE B 36 O LEU B 56 SHEET 3 AA2 7 VAL B 8 VAL B 11 1 N ALA B 9 O ALA B 35 SHEET 4 AA2 7 ALA B 84 ASN B 87 1 O VAL B 86 N LEU B 10 SHEET 5 AA2 7 GLY B 132 ILE B 137 1 O ILE B 137 N ASN B 87 SHEET 6 AA2 7 ILE B 177 PRO B 184 1 O ASN B 180 N ASN B 136 SHEET 7 AA2 7 GLU B 237 VAL B 240 1 O PHE B 238 N TYR B 183 CRYST1 73.827 88.818 157.371 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006354 0.00000 CONECT 3681 3682 3683 3684 3703 CONECT 3682 3681 CONECT 3683 3681 CONECT 3684 3681 3685 CONECT 3685 3684 3686 CONECT 3686 3685 3687 3688 CONECT 3687 3686 3692 CONECT 3688 3686 3689 3690 CONECT 3689 3688 CONECT 3690 3688 3691 3692 CONECT 3691 3690 3725 CONECT 3692 3687 3690 3693 CONECT 3693 3692 3694 3702 CONECT 3694 3693 3695 CONECT 3695 3694 3696 CONECT 3696 3695 3697 3702 CONECT 3697 3696 3698 3699 CONECT 3698 3697 CONECT 3699 3697 3700 CONECT 3700 3699 3701 CONECT 3701 3700 3702 CONECT 3702 3693 3696 3701 CONECT 3703 3681 3704 CONECT 3704 3703 3705 3706 3707 CONECT 3705 3704 CONECT 3706 3704 CONECT 3707 3704 3708 CONECT 3708 3707 3709 CONECT 3709 3708 3710 3711 CONECT 3710 3709 3715 CONECT 3711 3709 3712 3713 CONECT 3712 3711 CONECT 3713 3711 3714 3715 CONECT 3714 3713 CONECT 3715 3710 3713 3716 CONECT 3716 3715 3717 3724 CONECT 3717 3716 3718 CONECT 3718 3717 3719 3722 CONECT 3719 3718 3720 3721 CONECT 3720 3719 CONECT 3721 3719 CONECT 3722 3718 3723 CONECT 3723 3722 3724 CONECT 3724 3716 3723 CONECT 3725 3691 3726 3727 3728 CONECT 3726 3725 CONECT 3727 3725 CONECT 3728 3725 CONECT 3729 3730 3731 3732 3751 CONECT 3730 3729 CONECT 3731 3729 CONECT 3732 3729 3733 CONECT 3733 3732 3734 CONECT 3734 3733 3735 3736 CONECT 3735 3734 3740 CONECT 3736 3734 3737 3738 CONECT 3737 3736 CONECT 3738 3736 3739 3740 CONECT 3739 3738 3773 CONECT 3740 3735 3738 3741 CONECT 3741 3740 3742 3750 CONECT 3742 3741 3743 CONECT 3743 3742 3744 CONECT 3744 3743 3745 3750 CONECT 3745 3744 3746 3747 CONECT 3746 3745 CONECT 3747 3745 3748 CONECT 3748 3747 3749 CONECT 3749 3748 3750 CONECT 3750 3741 3744 3749 CONECT 3751 3729 3752 CONECT 3752 3751 3753 3754 3755 CONECT 3753 3752 CONECT 3754 3752 CONECT 3755 3752 3756 CONECT 3756 3755 3757 CONECT 3757 3756 3758 3759 CONECT 3758 3757 3763 CONECT 3759 3757 3760 3761 CONECT 3760 3759 CONECT 3761 3759 3762 3763 CONECT 3762 3761 CONECT 3763 3758 3761 3764 CONECT 3764 3763 3765 3772 CONECT 3765 3764 3766 CONECT 3766 3765 3767 3770 CONECT 3767 3766 3768 3769 CONECT 3768 3767 CONECT 3769 3767 CONECT 3770 3766 3771 CONECT 3771 3770 3772 CONECT 3772 3764 3771 CONECT 3773 3739 3774 3775 3776 CONECT 3774 3773 CONECT 3775 3773 CONECT 3776 3773 MASTER 380 0 2 23 14 0 0 6 4201 2 96 38 END