HEADER FLUORESCENT PROTEIN 26-APR-24 8ZBO TITLE CRYSTAL STRUCTURE OF THE BIPHOTOCHROMIC FLUORESCENT PROTEIN MOXSAASOTI TITLE 2 (F97M VARIANT) IN ITS GREEN ON-STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: F97M VARIANT OF THE BIPHOTOCHROMIC FLUORESCENT PROTEIN COMPND 3 MOXSAASOTI; COMPND 4 CHAIN: C, A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STYLOCOENIELLA ARMATA; SOURCE 3 ORGANISM_TAXID: 1917266; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MOXSAASOTI, POINT MUTANT, FLUORESCENT PROTEIN, CHROMOPHORE, MSAASOTI, KEYWDS 2 SAASOTI, BIPHOTOCHROMIC EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,I.O.MATYUTA,N.K.MARYNICH,M.E.MINYAEV,A.A.KHADIYATOVA, AUTHOR 2 V.O.POPOV,A.P.SAVITSKY REVDAT 3 31-JUL-24 8ZBO 1 JRNL REVDAT 2 24-JUL-24 8ZBO 1 JRNL REVDAT 1 12-JUN-24 8ZBO 0 JRNL AUTH N.K.MARYNICH,K.M.BOYKO,I.O.MATYUTA,M.E.MINYAEV, JRNL AUTH 2 A.A.KHADIYATOVA,V.O.POPOV,A.P.SAVITSKY JRNL TITL SINGLE-POINT SUBSTITUTION F97M LEADS TO IN CELLULO JRNL TITL 2 CRYSTALLIZATION OF THE BIPHOTOCHROMIC PROTEIN MOXSAASOTI. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 732 50419 2024 JRNL REFN ESSN 1090-2104 JRNL PMID 39032411 JRNL DOI 10.1016/J.BBRC.2024.150419 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 27773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1475 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1977 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.616 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3503 ; 0.014 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3177 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4714 ; 2.260 ; 1.833 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7366 ; 0.884 ; 1.763 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 9.466 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ;10.103 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 582 ;12.482 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 495 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4022 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 796 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1663 ; 2.076 ; 1.525 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1663 ; 2.076 ; 1.526 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2063 ; 2.948 ; 2.721 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2064 ; 2.948 ; 2.721 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1840 ; 3.076 ; 1.898 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1841 ; 3.076 ; 1.899 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2651 ; 4.501 ; 3.314 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3743 ; 6.570 ;17.790 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3744 ; 6.569 ;17.790 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 221 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1882 12.5092 -14.6154 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.0092 REMARK 3 T33: 0.0170 T12: 0.0050 REMARK 3 T13: 0.0041 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.3793 L22: 2.0810 REMARK 3 L33: 1.9194 L12: 0.4119 REMARK 3 L13: 0.2538 L23: 0.2610 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.0052 S13: -0.1175 REMARK 3 S21: 0.0338 S22: -0.0051 S23: -0.1096 REMARK 3 S31: 0.1274 S32: 0.1167 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0808 42.7526 -8.3062 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.0246 REMARK 3 T33: 0.0519 T12: 0.0109 REMARK 3 T13: -0.0063 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.5594 L22: 2.0753 REMARK 3 L33: 1.9610 L12: 0.6341 REMARK 3 L13: -0.0474 L23: -0.5267 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0720 S13: 0.2531 REMARK 3 S21: 0.2137 S22: -0.0550 S23: 0.1376 REMARK 3 S31: -0.2871 S32: -0.1022 S33: 0.0424 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 8ZBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300047362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29554 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 21.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM NITRATE HEXAHYDRATE, REMARK 280 20% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.82600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.40650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.62700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.40650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.82600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.62700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 LEU C 3 REMARK 465 SER C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 ILE C 222 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 TYR A 7 REMARK 465 PRO A 77 REMARK 465 GLY A 78 REMARK 465 ILE A 79 REMARK 465 VAL A 186 REMARK 465 VAL A 187 REMARK 465 GLU A 188 REMARK 465 MET A 189 REMARK 465 ASN A 220 REMARK 465 GLU A 221 REMARK 465 ILE A 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 50 CE NZ REMARK 470 LYS C 182 CE NZ REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C 65 CG - SD - CE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG C 70 NE - CZ - NH1 ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG C 70 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP C 132 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG C 174 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 218 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG C 218 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 MET A 65 CG - SD - CE ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET A 123 CG - SD - CE ANGL. DEV. = 11.1 DEGREES REMARK 500 ASP A 204 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 72 68.64 -105.79 REMARK 500 ILE A 72 74.07 -108.42 REMARK 500 PRO A 88 -62.07 17.74 REMARK 500 ASP A 115 -86.99 40.35 REMARK 500 ILE A 141 -68.77 -103.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 80 ASP A 81 -149.30 REMARK 500 PHE A 87 PRO A 88 -73.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 70 0.10 SIDE CHAIN REMARK 500 ARG A 218 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8ZBO C 0 222 PDB 8ZBO 8ZBO 0 222 DBREF 8ZBO A 0 222 PDB 8ZBO 8ZBO 0 222 SEQRES 1 C 221 MET MET ALA LEU SER LYS GLN TYR ILE PRO ASP ASP MET SEQRES 2 C 221 GLU LEU ILE PHE HIS MET ASP GLY ASN VAL ASN GLY HIS SEQRES 3 C 221 TYR PHE THR ILE VAL ALA THR GLY LYS ALA LYS PRO TYR SEQRES 4 C 221 GLU GLY LYS GLN ASN LEU LYS ALA THR VAL THR LYS GLY SEQRES 5 C 221 ALA PRO LEU PRO PHE SER THR ASP ILE LEU SER THR VAL SEQRES 6 C 221 MET 5SQ ASN ARG GLY ILE VAL HIS TYR PRO PRO GLY ILE SEQRES 7 C 221 PRO ASP TYR PHE LYS GLN SER PHE PRO GLU GLY TYR SER SEQRES 8 C 221 TRP GLU ARG THR MET ALA PHE GLU ASP GLY GLY PHE GLY SEQRES 9 C 221 THR VAL SER ALA ASP ILE LYS LEU LYS ASP ASN THR PHE SEQRES 10 C 221 ILE HIS THR SER MET PHE HIS GLY THR ASN PHE PRO ALA SEQRES 11 C 221 ASP GLY PRO VAL MET GLN ARG LYS THR ILE GLN TRP GLU SEQRES 12 C 221 LYS SER ILE GLU LYS MET THR VAL SER ASP GLY ILE VAL SEQRES 13 C 221 LYS GLY ASP ILE THR MET PHE LEU LEU LEU GLU GLY GLY SEQRES 14 C 221 GLY LYS TYR ARG ALA GLN PHE HIS THR SER TYR LYS ALA SEQRES 15 C 221 LYS LYS VAL VAL GLU MET PRO GLN SER HIS TYR VAL GLU SEQRES 16 C 221 HIS SER ILE GLU ARG THR ASN ASP ASP GLY THR GLN PHE SEQRES 17 C 221 GLU LEU ASN GLU HIS ALA VAL ALA ARG LEU ASN GLU ILE SEQRES 1 A 221 MET MET ALA LEU SER LYS GLN TYR ILE PRO ASP ASP MET SEQRES 2 A 221 GLU LEU ILE PHE HIS MET ASP GLY ASN VAL ASN GLY HIS SEQRES 3 A 221 TYR PHE THR ILE VAL ALA THR GLY LYS ALA LYS PRO TYR SEQRES 4 A 221 GLU GLY LYS GLN ASN LEU LYS ALA THR VAL THR LYS GLY SEQRES 5 A 221 ALA PRO LEU PRO PHE SER THR ASP ILE LEU SER THR VAL SEQRES 6 A 221 MET 5SQ ASN ARG GLY ILE VAL HIS TYR PRO PRO GLY ILE SEQRES 7 A 221 PRO ASP TYR PHE LYS GLN SER PHE PRO GLU GLY TYR SER SEQRES 8 A 221 TRP GLU ARG THR MET ALA PHE GLU ASP GLY GLY PHE GLY SEQRES 9 A 221 THR VAL SER ALA ASP ILE LYS LEU LYS ASP ASN THR PHE SEQRES 10 A 221 ILE HIS THR SER MET PHE HIS GLY THR ASN PHE PRO ALA SEQRES 11 A 221 ASP GLY PRO VAL MET GLN ARG LYS THR ILE GLN TRP GLU SEQRES 12 A 221 LYS SER ILE GLU LYS MET THR VAL SER ASP GLY ILE VAL SEQRES 13 A 221 LYS GLY ASP ILE THR MET PHE LEU LEU LEU GLU GLY GLY SEQRES 14 A 221 GLY LYS TYR ARG ALA GLN PHE HIS THR SER TYR LYS ALA SEQRES 15 A 221 LYS LYS VAL VAL GLU MET PRO GLN SER HIS TYR VAL GLU SEQRES 16 A 221 HIS SER ILE GLU ARG THR ASN ASP ASP GLY THR GLN PHE SEQRES 17 A 221 GLU LEU ASN GLU HIS ALA VAL ALA ARG LEU ASN GLU ILE HET 5SQ C 67 25 HET 5SQ A 67 25 HET NO3 C 301 4 HET NO3 C 302 4 HET NO3 C 303 4 HET NO3 C 304 4 HET EDO C 305 4 HET EDO C 306 4 HET NO3 A 301 4 HET NO3 A 302 4 HET PGE A 303 10 HETNAM 5SQ 2-[2-[(1S)-1-AZANYL-2-(1H-IMIDAZOL-4-YL)ETHYL]-4-[(4- HETNAM 2 5SQ HYDROXYPHENYL)METHYLIDENE]-5-OXIDANYLIDENE-IMIDAZOL-1- HETNAM 3 5SQ YL]ETHANOIC ACID HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN 5SQ GREEN CHROMOPHORE (HIS-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 5SQ 2(C17 H17 N5 O4) FORMUL 3 NO3 6(N O3 1-) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 11 PGE C6 H14 O4 FORMUL 12 HOH *245(H2 O) HELIX 1 AA1 PRO C 37 GLU C 39 5 3 HELIX 2 AA2 SER C 57 MET C 65 5 9 HELIX 3 AA3 ASP C 81 SER C 86 1 6 HELIX 4 AA4 PRO A 37 GLU A 39 5 3 HELIX 5 AA5 THR A 58 THR A 63 1 6 HELIX 6 AA6 ASP A 81 SER A 86 1 6 SHEET 1 AA113 THR C 140 TRP C 143 0 SHEET 2 AA113 ILE C 156 LEU C 167 -1 O LEU C 166 N GLN C 142 SHEET 3 AA113 LYS C 172 ALA C 183 -1 O TYR C 181 N VAL C 157 SHEET 4 AA113 TYR C 91 PHE C 99 -1 N GLU C 94 O SER C 180 SHEET 5 AA113 PHE C 104 LYS C 114 -1 O GLY C 105 N MET C 97 SHEET 6 AA113 THR C 117 THR C 127 -1 O ILE C 119 N LYS C 112 SHEET 7 AA113 MET C 12 VAL C 22 1 N ASN C 21 O GLY C 126 SHEET 8 AA113 HIS C 25 LYS C 36 -1 O ILE C 29 N MET C 18 SHEET 9 AA113 LYS C 41 LYS C 50 -1 O THR C 47 N VAL C 30 SHEET 10 AA113 GLN C 208 ARG C 218 -1 O PHE C 209 N ALA C 46 SHEET 11 AA113 HIS C 193 THR C 202 -1 N GLU C 196 O VAL C 216 SHEET 12 AA113 SER C 146 SER C 153 -1 N GLU C 148 O VAL C 195 SHEET 13 AA113 ILE C 156 LEU C 167 -1 O LYS C 158 N THR C 151 SHEET 1 AA213 THR A 140 TRP A 143 0 SHEET 2 AA213 ILE A 156 LEU A 167 -1 O LEU A 166 N ILE A 141 SHEET 3 AA213 LYS A 172 ALA A 183 -1 O TYR A 181 N VAL A 157 SHEET 4 AA213 TYR A 91 PHE A 99 -1 N GLU A 94 O SER A 180 SHEET 5 AA213 PHE A 104 LYS A 114 -1 O VAL A 107 N ARG A 95 SHEET 6 AA213 THR A 117 THR A 127 -1 O ILE A 119 N LYS A 112 SHEET 7 AA213 MET A 12 VAL A 22 1 N ASN A 21 O GLY A 126 SHEET 8 AA213 HIS A 25 LYS A 36 -1 O ALA A 35 N MET A 12 SHEET 9 AA213 LYS A 41 LYS A 50 -1 O THR A 47 N VAL A 30 SHEET 10 AA213 GLN A 208 ARG A 218 -1 O PHE A 209 N ALA A 46 SHEET 11 AA213 HIS A 193 THR A 202 -1 N TYR A 194 O ARG A 218 SHEET 12 AA213 SER A 146 SER A 153 -1 N MET A 150 O HIS A 193 SHEET 13 AA213 ILE A 156 LEU A 167 -1 O LYS A 158 N THR A 151 LINK C MET C 65 N1 5SQ C 67 1555 1555 1.36 LINK C3 5SQ C 67 N ASN C 69 1555 1555 1.39 LINK C MET A 65 N1 5SQ A 67 1555 1555 1.39 LINK C3 5SQ A 67 N ASN A 69 1555 1555 1.25 CISPEP 1 ALA C 52 PRO C 53 0 -8.79 CISPEP 2 PHE C 87 PRO C 88 0 5.95 CISPEP 3 ALA A 52 PRO A 53 0 -10.39 CRYST1 53.652 81.254 98.813 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010120 0.00000