data_8ZC1 # _entry.id 8ZC1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ZC1 pdb_00008zc1 10.2210/pdb8zc1/pdb WWPDB D_1300047392 ? ? EMDB EMD-39919 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-05-15 2 'Structure model' 1 1 2024-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ZC1 _pdbx_database_status.recvd_initial_deposition_date 2024-04-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region' _pdbx_database_related.db_id EMD-39919 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email xiong_xiaoli@gibh.ac.cn _pdbx_contact_author.name_first Xiaoli _pdbx_contact_author.name_last Xiong _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4632-9122 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, B.' 1 ? 'Gao, X.' 2 ? 'Li, Z.' 3 ? 'Chen, Q.' 4 ? 'He, J.' 5 ? 'Xiong, X.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 43 _citation.language ? _citation.page_first 114265 _citation.page_last 114265 _citation.title 'An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2024.114265 _citation.pdbx_database_id_PubMed 38805396 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, B.' 1 ? primary 'Niu, X.' 2 ? primary 'Deng, Y.' 3 ? primary 'Zhang, Z.' 4 ? primary 'Wang, Y.' 5 ? primary 'Gao, X.' 6 ? primary 'Liang, H.' 7 ? primary 'Li, Z.' 8 ? primary 'Wang, Q.' 9 ? primary 'Cheng, Y.' 10 ? primary 'Chen, Q.' 11 ? primary 'Huang, S.' 12 ? primary 'Pan, Y.' 13 ? primary 'Su, M.' 14 ? primary 'Lin, X.' 15 ? primary 'Niu, C.' 16 ? primary 'Chen, Y.' 17 ? primary 'Yang, W.' 18 ? primary 'Zhang, Y.' 19 ? primary 'Yan, Q.' 20 ? primary 'He, J.' 21 ? primary 'Zhao, J.' 22 ? primary 'Chen, L.' 23 ? primary 'Xiong, X.' 24 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 22153.029 1 ? ? RBD ? 2 polymer man 'Light chain of D1F6 Fab' 23623.270 1 ? ? ? ? 3 polymer man 'Heavy chain of D1F6 Fab' 24752.727 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIA PGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFP LRSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP ; ;ITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIA PGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFP LRSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP ; B ? 2 'polypeptide(L)' no no ;QPVLTQPPSASGPPGQSVSISCSGSRSNIGTNFVYWYQQLPGAAPKLLIYKNDQRPSGVPERFFGSKSGTSASLAISGLR SEDEVDYYCAAWDDSLSGHVFGAGTKVTVLGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK ADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS ; ;QPVLTQPPSASGPPGQSVSISCSGSRSNIGTNFVYWYQQLPGAAPKLLIYKNDQRPSGVPERFFGSKSGTSASLAISGLR SEDEVDYYCAAWDDSLSGHVFGAGTKVTVLGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK ADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS ; C ? 3 'polypeptide(L)' no no ;EVQLVQSGAEVKKPGASVKVSCKASGYIFSDYNIHWVRQAPGQGLEWMGWISPDSDDTNYAQSFQGRVTMTRDTSITTVY MELSSLRSDDTAVYFCARSVGYCSLNSCQRWMWFDTWGQGALVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC ; ;EVQLVQSGAEVKKPGASVKVSCKASGYIFSDYNIHWVRQAPGQGLEWMGWISPDSDDTNYAQSFQGRVTMTRDTSITTVY MELSSLRSDDTAVYFCARSVGYCSLNSCQRWMWFDTWGQGALVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 THR n 1 3 ASN n 1 4 LEU n 1 5 CYS n 1 6 PRO n 1 7 PHE n 1 8 ASP n 1 9 GLU n 1 10 VAL n 1 11 PHE n 1 12 ASN n 1 13 ALA n 1 14 THR n 1 15 ARG n 1 16 PHE n 1 17 ALA n 1 18 SER n 1 19 VAL n 1 20 TYR n 1 21 ALA n 1 22 TRP n 1 23 ASN n 1 24 ARG n 1 25 LYS n 1 26 ARG n 1 27 ILE n 1 28 SER n 1 29 ASN n 1 30 CYS n 1 31 VAL n 1 32 ALA n 1 33 ASP n 1 34 TYR n 1 35 SER n 1 36 VAL n 1 37 LEU n 1 38 TYR n 1 39 ASN n 1 40 PHE n 1 41 ALA n 1 42 PRO n 1 43 PHE n 1 44 PHE n 1 45 ALA n 1 46 PHE n 1 47 LYS n 1 48 CYS n 1 49 TYR n 1 50 GLY n 1 51 VAL n 1 52 SER n 1 53 PRO n 1 54 THR n 1 55 LYS n 1 56 LEU n 1 57 ASN n 1 58 ASP n 1 59 LEU n 1 60 CYS n 1 61 PHE n 1 62 THR n 1 63 ASN n 1 64 VAL n 1 65 TYR n 1 66 ALA n 1 67 ASP n 1 68 SER n 1 69 PHE n 1 70 VAL n 1 71 ILE n 1 72 ARG n 1 73 GLY n 1 74 ASN n 1 75 GLU n 1 76 VAL n 1 77 SER n 1 78 GLN n 1 79 ILE n 1 80 ALA n 1 81 PRO n 1 82 GLY n 1 83 GLN n 1 84 THR n 1 85 GLY n 1 86 ASN n 1 87 ILE n 1 88 ALA n 1 89 ASP n 1 90 TYR n 1 91 ASN n 1 92 TYR n 1 93 LYS n 1 94 LEU n 1 95 PRO n 1 96 ASP n 1 97 ASP n 1 98 PHE n 1 99 THR n 1 100 GLY n 1 101 CYS n 1 102 VAL n 1 103 ILE n 1 104 ALA n 1 105 TRP n 1 106 ASN n 1 107 SER n 1 108 ASN n 1 109 LYS n 1 110 LEU n 1 111 ASP n 1 112 SER n 1 113 LYS n 1 114 VAL n 1 115 GLY n 1 116 GLY n 1 117 ASN n 1 118 TYR n 1 119 ASN n 1 120 TYR n 1 121 LEU n 1 122 TYR n 1 123 ARG n 1 124 LEU n 1 125 PHE n 1 126 ARG n 1 127 LYS n 1 128 SER n 1 129 ASN n 1 130 LEU n 1 131 LYS n 1 132 PRO n 1 133 PHE n 1 134 GLU n 1 135 ARG n 1 136 ASP n 1 137 ILE n 1 138 SER n 1 139 THR n 1 140 GLU n 1 141 ILE n 1 142 TYR n 1 143 GLN n 1 144 ALA n 1 145 GLY n 1 146 ASN n 1 147 LYS n 1 148 PRO n 1 149 CYS n 1 150 ASN n 1 151 GLY n 1 152 VAL n 1 153 ALA n 1 154 GLY n 1 155 PHE n 1 156 ASN n 1 157 CYS n 1 158 TYR n 1 159 PHE n 1 160 PRO n 1 161 LEU n 1 162 ARG n 1 163 SER n 1 164 TYR n 1 165 GLY n 1 166 PHE n 1 167 ARG n 1 168 PRO n 1 169 THR n 1 170 TYR n 1 171 GLY n 1 172 VAL n 1 173 GLY n 1 174 HIS n 1 175 GLN n 1 176 PRO n 1 177 TYR n 1 178 ARG n 1 179 VAL n 1 180 VAL n 1 181 VAL n 1 182 LEU n 1 183 SER n 1 184 PHE n 1 185 GLU n 1 186 LEU n 1 187 LEU n 1 188 HIS n 1 189 ALA n 1 190 PRO n 1 191 ALA n 1 192 THR n 1 193 VAL n 1 194 CYS n 1 195 GLY n 1 196 PRO n 2 1 GLN n 2 2 PRO n 2 3 VAL n 2 4 LEU n 2 5 THR n 2 6 GLN n 2 7 PRO n 2 8 PRO n 2 9 SER n 2 10 ALA n 2 11 SER n 2 12 GLY n 2 13 PRO n 2 14 PRO n 2 15 GLY n 2 16 GLN n 2 17 SER n 2 18 VAL n 2 19 SER n 2 20 ILE n 2 21 SER n 2 22 CYS n 2 23 SER n 2 24 GLY n 2 25 SER n 2 26 ARG n 2 27 SER n 2 28 ASN n 2 29 ILE n 2 30 GLY n 2 31 THR n 2 32 ASN n 2 33 PHE n 2 34 VAL n 2 35 TYR n 2 36 TRP n 2 37 TYR n 2 38 GLN n 2 39 GLN n 2 40 LEU n 2 41 PRO n 2 42 GLY n 2 43 ALA n 2 44 ALA n 2 45 PRO n 2 46 LYS n 2 47 LEU n 2 48 LEU n 2 49 ILE n 2 50 TYR n 2 51 LYS n 2 52 ASN n 2 53 ASP n 2 54 GLN n 2 55 ARG n 2 56 PRO n 2 57 SER n 2 58 GLY n 2 59 VAL n 2 60 PRO n 2 61 GLU n 2 62 ARG n 2 63 PHE n 2 64 PHE n 2 65 GLY n 2 66 SER n 2 67 LYS n 2 68 SER n 2 69 GLY n 2 70 THR n 2 71 SER n 2 72 ALA n 2 73 SER n 2 74 LEU n 2 75 ALA n 2 76 ILE n 2 77 SER n 2 78 GLY n 2 79 LEU n 2 80 ARG n 2 81 SER n 2 82 GLU n 2 83 ASP n 2 84 GLU n 2 85 VAL n 2 86 ASP n 2 87 TYR n 2 88 TYR n 2 89 CYS n 2 90 ALA n 2 91 ALA n 2 92 TRP n 2 93 ASP n 2 94 ASP n 2 95 SER n 2 96 LEU n 2 97 SER n 2 98 GLY n 2 99 HIS n 2 100 VAL n 2 101 PHE n 2 102 GLY n 2 103 ALA n 2 104 GLY n 2 105 THR n 2 106 LYS n 2 107 VAL n 2 108 THR n 2 109 VAL n 2 110 LEU n 2 111 GLY n 2 112 THR n 2 113 LYS n 2 114 LEU n 2 115 THR n 2 116 VAL n 2 117 LEU n 2 118 GLY n 2 119 GLN n 2 120 PRO n 2 121 LYS n 2 122 ALA n 2 123 ALA n 2 124 PRO n 2 125 SER n 2 126 VAL n 2 127 THR n 2 128 LEU n 2 129 PHE n 2 130 PRO n 2 131 PRO n 2 132 SER n 2 133 SER n 2 134 GLU n 2 135 GLU n 2 136 LEU n 2 137 GLN n 2 138 ALA n 2 139 ASN n 2 140 LYS n 2 141 ALA n 2 142 THR n 2 143 LEU n 2 144 VAL n 2 145 CYS n 2 146 LEU n 2 147 ILE n 2 148 SER n 2 149 ASP n 2 150 PHE n 2 151 TYR n 2 152 PRO n 2 153 GLY n 2 154 ALA n 2 155 VAL n 2 156 THR n 2 157 VAL n 2 158 ALA n 2 159 TRP n 2 160 LYS n 2 161 ALA n 2 162 ASP n 2 163 SER n 2 164 SER n 2 165 PRO n 2 166 VAL n 2 167 LYS n 2 168 ALA n 2 169 GLY n 2 170 VAL n 2 171 GLU n 2 172 THR n 2 173 THR n 2 174 THR n 2 175 PRO n 2 176 SER n 2 177 LYS n 2 178 GLN n 2 179 SER n 2 180 ASN n 2 181 ASN n 2 182 LYS n 2 183 TYR n 2 184 ALA n 2 185 ALA n 2 186 SER n 2 187 SER n 2 188 TYR n 2 189 LEU n 2 190 SER n 2 191 LEU n 2 192 THR n 2 193 PRO n 2 194 GLU n 2 195 GLN n 2 196 TRP n 2 197 LYS n 2 198 SER n 2 199 HIS n 2 200 ARG n 2 201 SER n 2 202 TYR n 2 203 SER n 2 204 CYS n 2 205 GLN n 2 206 VAL n 2 207 THR n 2 208 HIS n 2 209 GLU n 2 210 GLY n 2 211 SER n 2 212 THR n 2 213 VAL n 2 214 GLU n 2 215 LYS n 2 216 THR n 2 217 VAL n 2 218 ALA n 2 219 PRO n 2 220 THR n 2 221 GLU n 2 222 CYS n 2 223 SER n 3 1 GLU n 3 2 VAL n 3 3 GLN n 3 4 LEU n 3 5 VAL n 3 6 GLN n 3 7 SER n 3 8 GLY n 3 9 ALA n 3 10 GLU n 3 11 VAL n 3 12 LYS n 3 13 LYS n 3 14 PRO n 3 15 GLY n 3 16 ALA n 3 17 SER n 3 18 VAL n 3 19 LYS n 3 20 VAL n 3 21 SER n 3 22 CYS n 3 23 LYS n 3 24 ALA n 3 25 SER n 3 26 GLY n 3 27 TYR n 3 28 ILE n 3 29 PHE n 3 30 SER n 3 31 ASP n 3 32 TYR n 3 33 ASN n 3 34 ILE n 3 35 HIS n 3 36 TRP n 3 37 VAL n 3 38 ARG n 3 39 GLN n 3 40 ALA n 3 41 PRO n 3 42 GLY n 3 43 GLN n 3 44 GLY n 3 45 LEU n 3 46 GLU n 3 47 TRP n 3 48 MET n 3 49 GLY n 3 50 TRP n 3 51 ILE n 3 52 SER n 3 53 PRO n 3 54 ASP n 3 55 SER n 3 56 ASP n 3 57 ASP n 3 58 THR n 3 59 ASN n 3 60 TYR n 3 61 ALA n 3 62 GLN n 3 63 SER n 3 64 PHE n 3 65 GLN n 3 66 GLY n 3 67 ARG n 3 68 VAL n 3 69 THR n 3 70 MET n 3 71 THR n 3 72 ARG n 3 73 ASP n 3 74 THR n 3 75 SER n 3 76 ILE n 3 77 THR n 3 78 THR n 3 79 VAL n 3 80 TYR n 3 81 MET n 3 82 GLU n 3 83 LEU n 3 84 SER n 3 85 SER n 3 86 LEU n 3 87 ARG n 3 88 SER n 3 89 ASP n 3 90 ASP n 3 91 THR n 3 92 ALA n 3 93 VAL n 3 94 TYR n 3 95 PHE n 3 96 CYS n 3 97 ALA n 3 98 ARG n 3 99 SER n 3 100 VAL n 3 101 GLY n 3 102 TYR n 3 103 CYS n 3 104 SER n 3 105 LEU n 3 106 ASN n 3 107 SER n 3 108 CYS n 3 109 GLN n 3 110 ARG n 3 111 TRP n 3 112 MET n 3 113 TRP n 3 114 PHE n 3 115 ASP n 3 116 THR n 3 117 TRP n 3 118 GLY n 3 119 GLN n 3 120 GLY n 3 121 ALA n 3 122 LEU n 3 123 VAL n 3 124 THR n 3 125 VAL n 3 126 SER n 3 127 SER n 3 128 ALA n 3 129 SER n 3 130 THR n 3 131 LYS n 3 132 GLY n 3 133 PRO n 3 134 SER n 3 135 VAL n 3 136 PHE n 3 137 PRO n 3 138 LEU n 3 139 ALA n 3 140 PRO n 3 141 SER n 3 142 SER n 3 143 LYS n 3 144 SER n 3 145 THR n 3 146 SER n 3 147 GLY n 3 148 GLY n 3 149 THR n 3 150 ALA n 3 151 ALA n 3 152 LEU n 3 153 GLY n 3 154 CYS n 3 155 LEU n 3 156 VAL n 3 157 LYS n 3 158 ASP n 3 159 TYR n 3 160 PHE n 3 161 PRO n 3 162 GLU n 3 163 PRO n 3 164 VAL n 3 165 THR n 3 166 VAL n 3 167 SER n 3 168 TRP n 3 169 ASN n 3 170 SER n 3 171 GLY n 3 172 ALA n 3 173 LEU n 3 174 THR n 3 175 SER n 3 176 GLY n 3 177 VAL n 3 178 HIS n 3 179 THR n 3 180 PHE n 3 181 PRO n 3 182 ALA n 3 183 VAL n 3 184 LEU n 3 185 GLN n 3 186 SER n 3 187 SER n 3 188 GLY n 3 189 LEU n 3 190 TYR n 3 191 SER n 3 192 LEU n 3 193 SER n 3 194 SER n 3 195 VAL n 3 196 VAL n 3 197 THR n 3 198 VAL n 3 199 PRO n 3 200 SER n 3 201 SER n 3 202 SER n 3 203 LEU n 3 204 GLY n 3 205 THR n 3 206 GLN n 3 207 THR n 3 208 TYR n 3 209 ILE n 3 210 CYS n 3 211 ASN n 3 212 VAL n 3 213 ASN n 3 214 HIS n 3 215 LYS n 3 216 PRO n 3 217 SER n 3 218 ASN n 3 219 THR n 3 220 LYS n 3 221 VAL n 3 222 ASP n 3 223 LYS n 3 224 LYS n 3 225 VAL n 3 226 GLU n 3 227 PRO n 3 228 LYS n 3 229 SER n 3 230 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 196 '2019-nCoV, SARS-CoV-2' ? 'S, 2' ? Omicron/BA.2 ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 223 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 230 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 332 ? ? ? B . n A 1 2 THR 2 333 ? ? ? B . n A 1 3 ASN 3 334 ? ? ? B . n A 1 4 LEU 4 335 ? ? ? B . n A 1 5 CYS 5 336 ? ? ? B . n A 1 6 PRO 6 337 ? ? ? B . n A 1 7 PHE 7 338 ? ? ? B . n A 1 8 ASP 8 339 ? ? ? B . n A 1 9 GLU 9 340 ? ? ? B . n A 1 10 VAL 10 341 341 VAL VAL B . n A 1 11 PHE 11 342 342 PHE PHE B . n A 1 12 ASN 12 343 343 ASN ASN B . n A 1 13 ALA 13 344 344 ALA ALA B . n A 1 14 THR 14 345 345 THR THR B . n A 1 15 ARG 15 346 346 ARG ARG B . n A 1 16 PHE 16 347 347 PHE PHE B . n A 1 17 ALA 17 348 348 ALA ALA B . n A 1 18 SER 18 349 349 SER SER B . n A 1 19 VAL 19 350 350 VAL VAL B . n A 1 20 TYR 20 351 351 TYR TYR B . n A 1 21 ALA 21 352 352 ALA ALA B . n A 1 22 TRP 22 353 353 TRP TRP B . n A 1 23 ASN 23 354 354 ASN ASN B . n A 1 24 ARG 24 355 355 ARG ARG B . n A 1 25 LYS 25 356 356 LYS LYS B . n A 1 26 ARG 26 357 357 ARG ARG B . n A 1 27 ILE 27 358 ? ? ? B . n A 1 28 SER 28 359 ? ? ? B . n A 1 29 ASN 29 360 ? ? ? B . n A 1 30 CYS 30 361 ? ? ? B . n A 1 31 VAL 31 362 ? ? ? B . n A 1 32 ALA 32 363 ? ? ? B . n A 1 33 ASP 33 364 ? ? ? B . n A 1 34 TYR 34 365 ? ? ? B . n A 1 35 SER 35 366 366 SER SER B . n A 1 36 VAL 36 367 367 VAL VAL B . n A 1 37 LEU 37 368 368 LEU LEU B . n A 1 38 TYR 38 369 369 TYR TYR B . n A 1 39 ASN 39 370 370 ASN ASN B . n A 1 40 PHE 40 371 371 PHE PHE B . n A 1 41 ALA 41 372 372 ALA ALA B . n A 1 42 PRO 42 373 373 PRO PRO B . n A 1 43 PHE 43 374 374 PHE PHE B . n A 1 44 PHE 44 375 375 PHE PHE B . n A 1 45 ALA 45 376 376 ALA ALA B . n A 1 46 PHE 46 377 377 PHE PHE B . n A 1 47 LYS 47 378 378 LYS LYS B . n A 1 48 CYS 48 379 379 CYS CYS B . n A 1 49 TYR 49 380 380 TYR TYR B . n A 1 50 GLY 50 381 381 GLY GLY B . n A 1 51 VAL 51 382 382 VAL VAL B . n A 1 52 SER 52 383 383 SER SER B . n A 1 53 PRO 53 384 384 PRO PRO B . n A 1 54 THR 54 385 385 THR THR B . n A 1 55 LYS 55 386 386 LYS LYS B . n A 1 56 LEU 56 387 387 LEU LEU B . n A 1 57 ASN 57 388 388 ASN ASN B . n A 1 58 ASP 58 389 389 ASP ASP B . n A 1 59 LEU 59 390 390 LEU LEU B . n A 1 60 CYS 60 391 ? ? ? B . n A 1 61 PHE 61 392 ? ? ? B . n A 1 62 THR 62 393 ? ? ? B . n A 1 63 ASN 63 394 ? ? ? B . n A 1 64 VAL 64 395 395 VAL VAL B . n A 1 65 TYR 65 396 396 TYR TYR B . n A 1 66 ALA 66 397 397 ALA ALA B . n A 1 67 ASP 67 398 398 ASP ASP B . n A 1 68 SER 68 399 399 SER SER B . n A 1 69 PHE 69 400 400 PHE PHE B . n A 1 70 VAL 70 401 401 VAL VAL B . n A 1 71 ILE 71 402 402 ILE ILE B . n A 1 72 ARG 72 403 403 ARG ARG B . n A 1 73 GLY 73 404 404 GLY GLY B . n A 1 74 ASN 74 405 405 ASN ASN B . n A 1 75 GLU 75 406 406 GLU GLU B . n A 1 76 VAL 76 407 407 VAL VAL B . n A 1 77 SER 77 408 408 SER SER B . n A 1 78 GLN 78 409 409 GLN GLN B . n A 1 79 ILE 79 410 410 ILE ILE B . n A 1 80 ALA 80 411 411 ALA ALA B . n A 1 81 PRO 81 412 412 PRO PRO B . n A 1 82 GLY 82 413 413 GLY GLY B . n A 1 83 GLN 83 414 414 GLN GLN B . n A 1 84 THR 84 415 415 THR THR B . n A 1 85 GLY 85 416 416 GLY GLY B . n A 1 86 ASN 86 417 417 ASN ASN B . n A 1 87 ILE 87 418 418 ILE ILE B . n A 1 88 ALA 88 419 419 ALA ALA B . n A 1 89 ASP 89 420 420 ASP ASP B . n A 1 90 TYR 90 421 421 TYR TYR B . n A 1 91 ASN 91 422 422 ASN ASN B . n A 1 92 TYR 92 423 423 TYR TYR B . n A 1 93 LYS 93 424 424 LYS LYS B . n A 1 94 LEU 94 425 425 LEU LEU B . n A 1 95 PRO 95 426 426 PRO PRO B . n A 1 96 ASP 96 427 427 ASP ASP B . n A 1 97 ASP 97 428 428 ASP ASP B . n A 1 98 PHE 98 429 429 PHE PHE B . n A 1 99 THR 99 430 430 THR THR B . n A 1 100 GLY 100 431 431 GLY GLY B . n A 1 101 CYS 101 432 432 CYS CYS B . n A 1 102 VAL 102 433 433 VAL VAL B . n A 1 103 ILE 103 434 434 ILE ILE B . n A 1 104 ALA 104 435 435 ALA ALA B . n A 1 105 TRP 105 436 436 TRP TRP B . n A 1 106 ASN 106 437 437 ASN ASN B . n A 1 107 SER 107 438 438 SER SER B . n A 1 108 ASN 108 439 439 ASN ASN B . n A 1 109 LYS 109 440 440 LYS LYS B . n A 1 110 LEU 110 441 441 LEU LEU B . n A 1 111 ASP 111 442 442 ASP ASP B . n A 1 112 SER 112 443 443 SER SER B . n A 1 113 LYS 113 444 444 LYS LYS B . n A 1 114 VAL 114 445 445 VAL VAL B . n A 1 115 GLY 115 446 446 GLY GLY B . n A 1 116 GLY 116 447 447 GLY GLY B . n A 1 117 ASN 117 448 448 ASN ASN B . n A 1 118 TYR 118 449 449 TYR TYR B . n A 1 119 ASN 119 450 450 ASN ASN B . n A 1 120 TYR 120 451 451 TYR TYR B . n A 1 121 LEU 121 452 452 LEU LEU B . n A 1 122 TYR 122 453 453 TYR TYR B . n A 1 123 ARG 123 454 454 ARG ARG B . n A 1 124 LEU 124 455 455 LEU LEU B . n A 1 125 PHE 125 456 456 PHE PHE B . n A 1 126 ARG 126 457 457 ARG ARG B . n A 1 127 LYS 127 458 458 LYS LYS B . n A 1 128 SER 128 459 459 SER SER B . n A 1 129 ASN 129 460 460 ASN ASN B . n A 1 130 LEU 130 461 461 LEU LEU B . n A 1 131 LYS 131 462 462 LYS LYS B . n A 1 132 PRO 132 463 463 PRO PRO B . n A 1 133 PHE 133 464 464 PHE PHE B . n A 1 134 GLU 134 465 465 GLU GLU B . n A 1 135 ARG 135 466 466 ARG ARG B . n A 1 136 ASP 136 467 467 ASP ASP B . n A 1 137 ILE 137 468 468 ILE ILE B . n A 1 138 SER 138 469 469 SER SER B . n A 1 139 THR 139 470 470 THR THR B . n A 1 140 GLU 140 471 471 GLU GLU B . n A 1 141 ILE 141 472 472 ILE ILE B . n A 1 142 TYR 142 473 473 TYR TYR B . n A 1 143 GLN 143 474 474 GLN GLN B . n A 1 144 ALA 144 475 475 ALA ALA B . n A 1 145 GLY 145 476 476 GLY GLY B . n A 1 146 ASN 146 477 477 ASN ASN B . n A 1 147 LYS 147 478 478 LYS LYS B . n A 1 148 PRO 148 479 479 PRO PRO B . n A 1 149 CYS 149 480 480 CYS CYS B . n A 1 150 ASN 150 481 481 ASN ASN B . n A 1 151 GLY 151 482 482 GLY GLY B . n A 1 152 VAL 152 483 483 VAL VAL B . n A 1 153 ALA 153 484 484 ALA ALA B . n A 1 154 GLY 154 485 485 GLY GLY B . n A 1 155 PHE 155 486 486 PHE PHE B . n A 1 156 ASN 156 487 487 ASN ASN B . n A 1 157 CYS 157 488 488 CYS CYS B . n A 1 158 TYR 158 489 489 TYR TYR B . n A 1 159 PHE 159 490 490 PHE PHE B . n A 1 160 PRO 160 491 491 PRO PRO B . n A 1 161 LEU 161 492 492 LEU LEU B . n A 1 162 ARG 162 493 493 ARG ARG B . n A 1 163 SER 163 494 494 SER SER B . n A 1 164 TYR 164 495 495 TYR TYR B . n A 1 165 GLY 165 496 496 GLY GLY B . n A 1 166 PHE 166 497 497 PHE PHE B . n A 1 167 ARG 167 498 498 ARG ARG B . n A 1 168 PRO 168 499 499 PRO PRO B . n A 1 169 THR 169 500 500 THR THR B . n A 1 170 TYR 170 501 501 TYR TYR B . n A 1 171 GLY 171 502 502 GLY GLY B . n A 1 172 VAL 172 503 503 VAL VAL B . n A 1 173 GLY 173 504 504 GLY GLY B . n A 1 174 HIS 174 505 505 HIS HIS B . n A 1 175 GLN 175 506 506 GLN GLN B . n A 1 176 PRO 176 507 507 PRO PRO B . n A 1 177 TYR 177 508 508 TYR TYR B . n A 1 178 ARG 178 509 509 ARG ARG B . n A 1 179 VAL 179 510 510 VAL VAL B . n A 1 180 VAL 180 511 511 VAL VAL B . n A 1 181 VAL 181 512 512 VAL VAL B . n A 1 182 LEU 182 513 513 LEU LEU B . n A 1 183 SER 183 514 514 SER SER B . n A 1 184 PHE 184 515 515 PHE PHE B . n A 1 185 GLU 185 516 ? ? ? B . n A 1 186 LEU 186 517 ? ? ? B . n A 1 187 LEU 187 518 ? ? ? B . n A 1 188 HIS 188 519 ? ? ? B . n A 1 189 ALA 189 520 ? ? ? B . n A 1 190 PRO 190 521 ? ? ? B . n A 1 191 ALA 191 522 ? ? ? B . n A 1 192 THR 192 523 ? ? ? B . n A 1 193 VAL 193 524 ? ? ? B . n A 1 194 CYS 194 525 ? ? ? B . n A 1 195 GLY 195 526 ? ? ? B . n A 1 196 PRO 196 527 ? ? ? B . n B 2 1 GLN 1 1 ? ? ? C . n B 2 2 PRO 2 2 2 PRO PRO C . n B 2 3 VAL 3 3 3 VAL VAL C . n B 2 4 LEU 4 4 4 LEU LEU C . n B 2 5 THR 5 5 5 THR THR C . n B 2 6 GLN 6 6 6 GLN GLN C . n B 2 7 PRO 7 7 7 PRO PRO C . n B 2 8 PRO 8 8 8 PRO PRO C . n B 2 9 SER 9 9 9 SER SER C . n B 2 10 ALA 10 10 10 ALA ALA C . n B 2 11 SER 11 11 11 SER SER C . n B 2 12 GLY 12 12 12 GLY GLY C . n B 2 13 PRO 13 13 13 PRO PRO C . n B 2 14 PRO 14 14 14 PRO PRO C . n B 2 15 GLY 15 15 15 GLY GLY C . n B 2 16 GLN 16 16 16 GLN GLN C . n B 2 17 SER 17 17 17 SER SER C . n B 2 18 VAL 18 18 18 VAL VAL C . n B 2 19 SER 19 19 19 SER SER C . n B 2 20 ILE 20 20 20 ILE ILE C . n B 2 21 SER 21 21 21 SER SER C . n B 2 22 CYS 22 22 22 CYS CYS C . n B 2 23 SER 23 23 23 SER SER C . n B 2 24 GLY 24 24 24 GLY GLY C . n B 2 25 SER 25 25 25 SER SER C . n B 2 26 ARG 26 26 26 ARG ARG C . n B 2 27 SER 27 27 27 SER SER C . n B 2 28 ASN 28 28 28 ASN ASN C . n B 2 29 ILE 29 29 29 ILE ILE C . n B 2 30 GLY 30 30 30 GLY GLY C . n B 2 31 THR 31 31 31 THR THR C . n B 2 32 ASN 32 32 32 ASN ASN C . n B 2 33 PHE 33 33 33 PHE PHE C . n B 2 34 VAL 34 34 34 VAL VAL C . n B 2 35 TYR 35 35 35 TYR TYR C . n B 2 36 TRP 36 36 36 TRP TRP C . n B 2 37 TYR 37 37 37 TYR TYR C . n B 2 38 GLN 38 38 38 GLN GLN C . n B 2 39 GLN 39 39 39 GLN GLN C . n B 2 40 LEU 40 40 40 LEU LEU C . n B 2 41 PRO 41 41 41 PRO PRO C . n B 2 42 GLY 42 42 42 GLY GLY C . n B 2 43 ALA 43 43 43 ALA ALA C . n B 2 44 ALA 44 44 44 ALA ALA C . n B 2 45 PRO 45 45 45 PRO PRO C . n B 2 46 LYS 46 46 46 LYS LYS C . n B 2 47 LEU 47 47 47 LEU LEU C . n B 2 48 LEU 48 48 48 LEU LEU C . n B 2 49 ILE 49 49 49 ILE ILE C . n B 2 50 TYR 50 50 50 TYR TYR C . n B 2 51 LYS 51 51 51 LYS LYS C . n B 2 52 ASN 52 52 52 ASN ASN C . n B 2 53 ASP 53 53 53 ASP ASP C . n B 2 54 GLN 54 54 54 GLN GLN C . n B 2 55 ARG 55 55 55 ARG ARG C . n B 2 56 PRO 56 56 56 PRO PRO C . n B 2 57 SER 57 57 57 SER SER C . n B 2 58 GLY 58 58 58 GLY GLY C . n B 2 59 VAL 59 59 59 VAL VAL C . n B 2 60 PRO 60 60 60 PRO PRO C . n B 2 61 GLU 61 61 61 GLU GLU C . n B 2 62 ARG 62 62 62 ARG ARG C . n B 2 63 PHE 63 63 63 PHE PHE C . n B 2 64 PHE 64 64 64 PHE PHE C . n B 2 65 GLY 65 65 65 GLY GLY C . n B 2 66 SER 66 66 66 SER SER C . n B 2 67 LYS 67 67 67 LYS LYS C . n B 2 68 SER 68 68 68 SER SER C . n B 2 69 GLY 69 69 69 GLY GLY C . n B 2 70 THR 70 70 70 THR THR C . n B 2 71 SER 71 71 71 SER SER C . n B 2 72 ALA 72 72 72 ALA ALA C . n B 2 73 SER 73 73 73 SER SER C . n B 2 74 LEU 74 74 74 LEU LEU C . n B 2 75 ALA 75 75 75 ALA ALA C . n B 2 76 ILE 76 76 76 ILE ILE C . n B 2 77 SER 77 77 77 SER SER C . n B 2 78 GLY 78 78 78 GLY GLY C . n B 2 79 LEU 79 79 79 LEU LEU C . n B 2 80 ARG 80 80 80 ARG ARG C . n B 2 81 SER 81 81 81 SER SER C . n B 2 82 GLU 82 82 82 GLU GLU C . n B 2 83 ASP 83 83 83 ASP ASP C . n B 2 84 GLU 84 84 84 GLU GLU C . n B 2 85 VAL 85 85 85 VAL VAL C . n B 2 86 ASP 86 86 86 ASP ASP C . n B 2 87 TYR 87 87 87 TYR TYR C . n B 2 88 TYR 88 88 88 TYR TYR C . n B 2 89 CYS 89 89 89 CYS CYS C . n B 2 90 ALA 90 90 90 ALA ALA C . n B 2 91 ALA 91 91 91 ALA ALA C . n B 2 92 TRP 92 92 92 TRP TRP C . n B 2 93 ASP 93 93 93 ASP ASP C . n B 2 94 ASP 94 94 94 ASP ASP C . n B 2 95 SER 95 95 95 SER SER C . n B 2 96 LEU 96 96 96 LEU LEU C . n B 2 97 SER 97 97 97 SER SER C . n B 2 98 GLY 98 98 98 GLY GLY C . n B 2 99 HIS 99 99 99 HIS HIS C . n B 2 100 VAL 100 100 100 VAL VAL C . n B 2 101 PHE 101 101 101 PHE PHE C . n B 2 102 GLY 102 102 102 GLY GLY C . n B 2 103 ALA 103 103 103 ALA ALA C . n B 2 104 GLY 104 104 104 GLY GLY C . n B 2 105 THR 105 105 105 THR THR C . n B 2 106 LYS 106 106 106 LYS LYS C . n B 2 107 VAL 107 107 107 VAL VAL C . n B 2 108 THR 108 108 108 THR THR C . n B 2 109 VAL 109 109 109 VAL VAL C . n B 2 110 LEU 110 110 110 LEU LEU C . n B 2 111 GLY 111 111 ? ? ? C . n B 2 112 THR 112 112 ? ? ? C . n B 2 113 LYS 113 113 ? ? ? C . n B 2 114 LEU 114 114 ? ? ? C . n B 2 115 THR 115 115 ? ? ? C . n B 2 116 VAL 116 116 ? ? ? C . n B 2 117 LEU 117 117 ? ? ? C . n B 2 118 GLY 118 118 118 GLY GLY C . n B 2 119 GLN 119 119 119 GLN GLN C . n B 2 120 PRO 120 120 120 PRO PRO C . n B 2 121 LYS 121 121 121 LYS LYS C . n B 2 122 ALA 122 122 122 ALA ALA C . n B 2 123 ALA 123 123 123 ALA ALA C . n B 2 124 PRO 124 124 124 PRO PRO C . n B 2 125 SER 125 125 125 SER SER C . n B 2 126 VAL 126 126 126 VAL VAL C . n B 2 127 THR 127 127 127 THR THR C . n B 2 128 LEU 128 128 128 LEU LEU C . n B 2 129 PHE 129 129 129 PHE PHE C . n B 2 130 PRO 130 130 130 PRO PRO C . n B 2 131 PRO 131 131 131 PRO PRO C . n B 2 132 SER 132 132 132 SER SER C . n B 2 133 SER 133 133 133 SER SER C . n B 2 134 GLU 134 134 134 GLU GLU C . n B 2 135 GLU 135 135 135 GLU GLU C . n B 2 136 LEU 136 136 136 LEU LEU C . n B 2 137 GLN 137 137 137 GLN GLN C . n B 2 138 ALA 138 138 138 ALA ALA C . n B 2 139 ASN 139 139 139 ASN ASN C . n B 2 140 LYS 140 140 140 LYS LYS C . n B 2 141 ALA 141 141 141 ALA ALA C . n B 2 142 THR 142 142 142 THR THR C . n B 2 143 LEU 143 143 143 LEU LEU C . n B 2 144 VAL 144 144 144 VAL VAL C . n B 2 145 CYS 145 145 145 CYS CYS C . n B 2 146 LEU 146 146 146 LEU LEU C . n B 2 147 ILE 147 147 147 ILE ILE C . n B 2 148 SER 148 148 148 SER SER C . n B 2 149 ASP 149 149 149 ASP ASP C . n B 2 150 PHE 150 150 150 PHE PHE C . n B 2 151 TYR 151 151 151 TYR TYR C . n B 2 152 PRO 152 152 152 PRO PRO C . n B 2 153 GLY 153 153 153 GLY GLY C . n B 2 154 ALA 154 154 154 ALA ALA C . n B 2 155 VAL 155 155 155 VAL VAL C . n B 2 156 THR 156 156 156 THR THR C . n B 2 157 VAL 157 157 157 VAL VAL C . n B 2 158 ALA 158 158 158 ALA ALA C . n B 2 159 TRP 159 159 159 TRP TRP C . n B 2 160 LYS 160 160 160 LYS LYS C . n B 2 161 ALA 161 161 161 ALA ALA C . n B 2 162 ASP 162 162 162 ASP ASP C . n B 2 163 SER 163 163 163 SER SER C . n B 2 164 SER 164 164 164 SER SER C . n B 2 165 PRO 165 165 165 PRO PRO C . n B 2 166 VAL 166 166 166 VAL VAL C . n B 2 167 LYS 167 167 167 LYS LYS C . n B 2 168 ALA 168 168 168 ALA ALA C . n B 2 169 GLY 169 169 169 GLY GLY C . n B 2 170 VAL 170 170 170 VAL VAL C . n B 2 171 GLU 171 171 171 GLU GLU C . n B 2 172 THR 172 172 172 THR THR C . n B 2 173 THR 173 173 173 THR THR C . n B 2 174 THR 174 174 174 THR THR C . n B 2 175 PRO 175 175 175 PRO PRO C . n B 2 176 SER 176 176 176 SER SER C . n B 2 177 LYS 177 177 177 LYS LYS C . n B 2 178 GLN 178 178 178 GLN GLN C . n B 2 179 SER 179 179 179 SER SER C . n B 2 180 ASN 180 180 180 ASN ASN C . n B 2 181 ASN 181 181 181 ASN ASN C . n B 2 182 LYS 182 182 182 LYS LYS C . n B 2 183 TYR 183 183 183 TYR TYR C . n B 2 184 ALA 184 184 184 ALA ALA C . n B 2 185 ALA 185 185 185 ALA ALA C . n B 2 186 SER 186 186 186 SER SER C . n B 2 187 SER 187 187 187 SER SER C . n B 2 188 TYR 188 188 188 TYR TYR C . n B 2 189 LEU 189 189 189 LEU LEU C . n B 2 190 SER 190 190 190 SER SER C . n B 2 191 LEU 191 191 191 LEU LEU C . n B 2 192 THR 192 192 192 THR THR C . n B 2 193 PRO 193 193 193 PRO PRO C . n B 2 194 GLU 194 194 194 GLU GLU C . n B 2 195 GLN 195 195 195 GLN GLN C . n B 2 196 TRP 196 196 196 TRP TRP C . n B 2 197 LYS 197 197 197 LYS LYS C . n B 2 198 SER 198 198 198 SER SER C . n B 2 199 HIS 199 199 199 HIS HIS C . n B 2 200 ARG 200 200 200 ARG ARG C . n B 2 201 SER 201 201 201 SER SER C . n B 2 202 TYR 202 202 202 TYR TYR C . n B 2 203 SER 203 203 203 SER SER C . n B 2 204 CYS 204 204 204 CYS CYS C . n B 2 205 GLN 205 205 205 GLN GLN C . n B 2 206 VAL 206 206 206 VAL VAL C . n B 2 207 THR 207 207 207 THR THR C . n B 2 208 HIS 208 208 208 HIS HIS C . n B 2 209 GLU 209 209 209 GLU GLU C . n B 2 210 GLY 210 210 210 GLY GLY C . n B 2 211 SER 211 211 211 SER SER C . n B 2 212 THR 212 212 212 THR THR C . n B 2 213 VAL 213 213 213 VAL VAL C . n B 2 214 GLU 214 214 214 GLU GLU C . n B 2 215 LYS 215 215 215 LYS LYS C . n B 2 216 THR 216 216 216 THR THR C . n B 2 217 VAL 217 217 217 VAL VAL C . n B 2 218 ALA 218 218 218 ALA ALA C . n B 2 219 PRO 219 219 219 PRO PRO C . n B 2 220 THR 220 220 220 THR THR C . n B 2 221 GLU 221 221 221 GLU GLU C . n B 2 222 CYS 222 222 ? ? ? C . n B 2 223 SER 223 223 ? ? ? C . n C 3 1 GLU 1 1 ? ? ? E . n C 3 2 VAL 2 2 2 VAL VAL E . n C 3 3 GLN 3 3 3 GLN GLN E . n C 3 4 LEU 4 4 4 LEU LEU E . n C 3 5 VAL 5 5 5 VAL VAL E . n C 3 6 GLN 6 6 6 GLN GLN E . n C 3 7 SER 7 7 7 SER SER E . n C 3 8 GLY 8 8 8 GLY GLY E . n C 3 9 ALA 9 9 9 ALA ALA E . n C 3 10 GLU 10 10 10 GLU GLU E . n C 3 11 VAL 11 11 11 VAL VAL E . n C 3 12 LYS 12 12 12 LYS LYS E . n C 3 13 LYS 13 13 13 LYS LYS E . n C 3 14 PRO 14 14 14 PRO PRO E . n C 3 15 GLY 15 15 15 GLY GLY E . n C 3 16 ALA 16 16 16 ALA ALA E . n C 3 17 SER 17 17 17 SER SER E . n C 3 18 VAL 18 18 18 VAL VAL E . n C 3 19 LYS 19 19 19 LYS LYS E . n C 3 20 VAL 20 20 20 VAL VAL E . n C 3 21 SER 21 21 21 SER SER E . n C 3 22 CYS 22 22 22 CYS CYS E . n C 3 23 LYS 23 23 23 LYS LYS E . n C 3 24 ALA 24 24 24 ALA ALA E . n C 3 25 SER 25 25 25 SER SER E . n C 3 26 GLY 26 26 26 GLY GLY E . n C 3 27 TYR 27 27 27 TYR TYR E . n C 3 28 ILE 28 28 28 ILE ILE E . n C 3 29 PHE 29 29 29 PHE PHE E . n C 3 30 SER 30 30 30 SER SER E . n C 3 31 ASP 31 31 31 ASP ASP E . n C 3 32 TYR 32 32 32 TYR TYR E . n C 3 33 ASN 33 33 33 ASN ASN E . n C 3 34 ILE 34 34 34 ILE ILE E . n C 3 35 HIS 35 35 35 HIS HIS E . n C 3 36 TRP 36 36 36 TRP TRP E . n C 3 37 VAL 37 37 37 VAL VAL E . n C 3 38 ARG 38 38 38 ARG ARG E . n C 3 39 GLN 39 39 39 GLN GLN E . n C 3 40 ALA 40 40 40 ALA ALA E . n C 3 41 PRO 41 41 41 PRO PRO E . n C 3 42 GLY 42 42 42 GLY GLY E . n C 3 43 GLN 43 43 43 GLN GLN E . n C 3 44 GLY 44 44 44 GLY GLY E . n C 3 45 LEU 45 45 45 LEU LEU E . n C 3 46 GLU 46 46 46 GLU GLU E . n C 3 47 TRP 47 47 47 TRP TRP E . n C 3 48 MET 48 48 48 MET MET E . n C 3 49 GLY 49 49 49 GLY GLY E . n C 3 50 TRP 50 50 50 TRP TRP E . n C 3 51 ILE 51 51 51 ILE ILE E . n C 3 52 SER 52 52 52 SER SER E . n C 3 53 PRO 53 53 53 PRO PRO E . n C 3 54 ASP 54 54 54 ASP ASP E . n C 3 55 SER 55 55 55 SER SER E . n C 3 56 ASP 56 56 56 ASP ASP E . n C 3 57 ASP 57 57 57 ASP ASP E . n C 3 58 THR 58 58 58 THR THR E . n C 3 59 ASN 59 59 59 ASN ASN E . n C 3 60 TYR 60 60 60 TYR TYR E . n C 3 61 ALA 61 61 61 ALA ALA E . n C 3 62 GLN 62 62 62 GLN GLN E . n C 3 63 SER 63 63 63 SER SER E . n C 3 64 PHE 64 64 64 PHE PHE E . n C 3 65 GLN 65 65 65 GLN GLN E . n C 3 66 GLY 66 66 66 GLY GLY E . n C 3 67 ARG 67 67 67 ARG ARG E . n C 3 68 VAL 68 68 68 VAL VAL E . n C 3 69 THR 69 69 69 THR THR E . n C 3 70 MET 70 70 70 MET MET E . n C 3 71 THR 71 71 71 THR THR E . n C 3 72 ARG 72 72 72 ARG ARG E . n C 3 73 ASP 73 73 73 ASP ASP E . n C 3 74 THR 74 74 74 THR THR E . n C 3 75 SER 75 75 75 SER SER E . n C 3 76 ILE 76 76 76 ILE ILE E . n C 3 77 THR 77 77 77 THR THR E . n C 3 78 THR 78 78 78 THR THR E . n C 3 79 VAL 79 79 79 VAL VAL E . n C 3 80 TYR 80 80 80 TYR TYR E . n C 3 81 MET 81 81 81 MET MET E . n C 3 82 GLU 82 82 82 GLU GLU E . n C 3 83 LEU 83 83 83 LEU LEU E . n C 3 84 SER 84 84 84 SER SER E . n C 3 85 SER 85 85 85 SER SER E . n C 3 86 LEU 86 86 86 LEU LEU E . n C 3 87 ARG 87 87 87 ARG ARG E . n C 3 88 SER 88 88 88 SER SER E . n C 3 89 ASP 89 89 89 ASP ASP E . n C 3 90 ASP 90 90 90 ASP ASP E . n C 3 91 THR 91 91 91 THR THR E . n C 3 92 ALA 92 92 92 ALA ALA E . n C 3 93 VAL 93 93 93 VAL VAL E . n C 3 94 TYR 94 94 94 TYR TYR E . n C 3 95 PHE 95 95 95 PHE PHE E . n C 3 96 CYS 96 96 96 CYS CYS E . n C 3 97 ALA 97 97 97 ALA ALA E . n C 3 98 ARG 98 98 98 ARG ARG E . n C 3 99 SER 99 99 99 SER SER E . n C 3 100 VAL 100 100 100 VAL VAL E . n C 3 101 GLY 101 101 101 GLY GLY E . n C 3 102 TYR 102 102 102 TYR TYR E . n C 3 103 CYS 103 103 103 CYS CYS E . n C 3 104 SER 104 104 104 SER SER E . n C 3 105 LEU 105 105 105 LEU LEU E . n C 3 106 ASN 106 106 106 ASN ASN E . n C 3 107 SER 107 107 107 SER SER E . n C 3 108 CYS 108 108 108 CYS CYS E . n C 3 109 GLN 109 109 109 GLN GLN E . n C 3 110 ARG 110 110 110 ARG ARG E . n C 3 111 TRP 111 111 111 TRP TRP E . n C 3 112 MET 112 112 112 MET MET E . n C 3 113 TRP 113 113 113 TRP TRP E . n C 3 114 PHE 114 114 114 PHE PHE E . n C 3 115 ASP 115 115 115 ASP ASP E . n C 3 116 THR 116 116 116 THR THR E . n C 3 117 TRP 117 117 117 TRP TRP E . n C 3 118 GLY 118 118 118 GLY GLY E . n C 3 119 GLN 119 119 119 GLN GLN E . n C 3 120 GLY 120 120 120 GLY GLY E . n C 3 121 ALA 121 121 121 ALA ALA E . n C 3 122 LEU 122 122 122 LEU LEU E . n C 3 123 VAL 123 123 123 VAL VAL E . n C 3 124 THR 124 124 124 THR THR E . n C 3 125 VAL 125 125 125 VAL VAL E . n C 3 126 SER 126 126 126 SER SER E . n C 3 127 SER 127 127 127 SER SER E . n C 3 128 ALA 128 128 128 ALA ALA E . n C 3 129 SER 129 129 129 SER SER E . n C 3 130 THR 130 130 130 THR THR E . n C 3 131 LYS 131 131 131 LYS LYS E . n C 3 132 GLY 132 132 132 GLY GLY E . n C 3 133 PRO 133 133 133 PRO PRO E . n C 3 134 SER 134 134 134 SER SER E . n C 3 135 VAL 135 135 135 VAL VAL E . n C 3 136 PHE 136 136 136 PHE PHE E . n C 3 137 PRO 137 137 137 PRO PRO E . n C 3 138 LEU 138 138 138 LEU LEU E . n C 3 139 ALA 139 139 139 ALA ALA E . n C 3 140 PRO 140 140 140 PRO PRO E . n C 3 141 SER 141 141 141 SER SER E . n C 3 142 SER 142 142 ? ? ? E . n C 3 143 LYS 143 143 ? ? ? E . n C 3 144 SER 144 144 ? ? ? E . n C 3 145 THR 145 145 ? ? ? E . n C 3 146 SER 146 146 ? ? ? E . n C 3 147 GLY 147 147 ? ? ? E . n C 3 148 GLY 148 148 ? ? ? E . n C 3 149 THR 149 149 149 THR THR E . n C 3 150 ALA 150 150 150 ALA ALA E . n C 3 151 ALA 151 151 151 ALA ALA E . n C 3 152 LEU 152 152 152 LEU LEU E . n C 3 153 GLY 153 153 153 GLY GLY E . n C 3 154 CYS 154 154 154 CYS CYS E . n C 3 155 LEU 155 155 155 LEU LEU E . n C 3 156 VAL 156 156 156 VAL VAL E . n C 3 157 LYS 157 157 157 LYS LYS E . n C 3 158 ASP 158 158 158 ASP ASP E . n C 3 159 TYR 159 159 159 TYR TYR E . n C 3 160 PHE 160 160 160 PHE PHE E . n C 3 161 PRO 161 161 161 PRO PRO E . n C 3 162 GLU 162 162 162 GLU GLU E . n C 3 163 PRO 163 163 163 PRO PRO E . n C 3 164 VAL 164 164 164 VAL VAL E . n C 3 165 THR 165 165 165 THR THR E . n C 3 166 VAL 166 166 166 VAL VAL E . n C 3 167 SER 167 167 167 SER SER E . n C 3 168 TRP 168 168 168 TRP TRP E . n C 3 169 ASN 169 169 169 ASN ASN E . n C 3 170 SER 170 170 170 SER SER E . n C 3 171 GLY 171 171 171 GLY GLY E . n C 3 172 ALA 172 172 172 ALA ALA E . n C 3 173 LEU 173 173 173 LEU LEU E . n C 3 174 THR 174 174 174 THR THR E . n C 3 175 SER 175 175 175 SER SER E . n C 3 176 GLY 176 176 176 GLY GLY E . n C 3 177 VAL 177 177 177 VAL VAL E . n C 3 178 HIS 178 178 178 HIS HIS E . n C 3 179 THR 179 179 179 THR THR E . n C 3 180 PHE 180 180 180 PHE PHE E . n C 3 181 PRO 181 181 181 PRO PRO E . n C 3 182 ALA 182 182 182 ALA ALA E . n C 3 183 VAL 183 183 183 VAL VAL E . n C 3 184 LEU 184 184 184 LEU LEU E . n C 3 185 GLN 185 185 185 GLN GLN E . n C 3 186 SER 186 186 186 SER SER E . n C 3 187 SER 187 187 187 SER SER E . n C 3 188 GLY 188 188 188 GLY GLY E . n C 3 189 LEU 189 189 189 LEU LEU E . n C 3 190 TYR 190 190 190 TYR TYR E . n C 3 191 SER 191 191 191 SER SER E . n C 3 192 LEU 192 192 192 LEU LEU E . n C 3 193 SER 193 193 193 SER SER E . n C 3 194 SER 194 194 194 SER SER E . n C 3 195 VAL 195 195 195 VAL VAL E . n C 3 196 VAL 196 196 196 VAL VAL E . n C 3 197 THR 197 197 197 THR THR E . n C 3 198 VAL 198 198 198 VAL VAL E . n C 3 199 PRO 199 199 199 PRO PRO E . n C 3 200 SER 200 200 200 SER SER E . n C 3 201 SER 201 201 201 SER SER E . n C 3 202 SER 202 202 202 SER SER E . n C 3 203 LEU 203 203 203 LEU LEU E . n C 3 204 GLY 204 204 204 GLY GLY E . n C 3 205 THR 205 205 205 THR THR E . n C 3 206 GLN 206 206 206 GLN GLN E . n C 3 207 THR 207 207 207 THR THR E . n C 3 208 TYR 208 208 208 TYR TYR E . n C 3 209 ILE 209 209 209 ILE ILE E . n C 3 210 CYS 210 210 210 CYS CYS E . n C 3 211 ASN 211 211 211 ASN ASN E . n C 3 212 VAL 212 212 212 VAL VAL E . n C 3 213 ASN 213 213 213 ASN ASN E . n C 3 214 HIS 214 214 214 HIS HIS E . n C 3 215 LYS 215 215 215 LYS LYS E . n C 3 216 PRO 216 216 216 PRO PRO E . n C 3 217 SER 217 217 217 SER SER E . n C 3 218 ASN 218 218 218 ASN ASN E . n C 3 219 THR 219 219 219 THR THR E . n C 3 220 LYS 220 220 220 LYS LYS E . n C 3 221 VAL 221 221 221 VAL VAL E . n C 3 222 ASP 222 222 222 ASP ASP E . n C 3 223 LYS 223 223 223 LYS LYS E . n C 3 224 LYS 224 224 224 LYS LYS E . n C 3 225 VAL 225 225 225 VAL VAL E . n C 3 226 GLU 226 226 226 GLU GLU E . n C 3 227 PRO 227 227 227 PRO PRO E . n C 3 228 LYS 228 228 228 LYS LYS E . n C 3 229 SER 229 229 229 SER SER E . n C 3 230 CYS 230 230 ? ? ? E . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 E SER 186 ? OG ? C SER 186 OG 2 1 Y 1 E SER 202 ? OG ? C SER 202 OG 3 1 Y 1 E GLN 206 ? CG ? C GLN 206 CG 4 1 Y 1 E GLN 206 ? CD ? C GLN 206 CD 5 1 Y 1 E GLN 206 ? OE1 ? C GLN 206 OE1 6 1 Y 1 E GLN 206 ? NE2 ? C GLN 206 NE2 7 1 Y 1 E LYS 220 ? CG ? C LYS 220 CG 8 1 Y 1 E LYS 220 ? CD ? C LYS 220 CD 9 1 Y 1 E LYS 220 ? CE ? C LYS 220 CE 10 1 Y 1 E LYS 220 ? NZ ? C LYS 220 NZ 11 1 Y 1 E LYS 224 ? CG ? C LYS 224 CG 12 1 Y 1 E LYS 224 ? CD ? C LYS 224 CD 13 1 Y 1 E LYS 224 ? CE ? C LYS 224 CE 14 1 Y 1 E LYS 224 ? NZ ? C LYS 224 NZ 15 1 Y 1 E LYS 228 ? CG ? C LYS 228 CG 16 1 Y 1 E LYS 228 ? CD ? C LYS 228 CD 17 1 Y 1 E LYS 228 ? CE ? C LYS 228 CE 18 1 Y 1 E LYS 228 ? NZ ? C LYS 228 NZ # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8ZC1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8ZC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ZC1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8ZC1 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 4756 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.746 ? 6484 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.871 ? 657 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.052 ? 712 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 ? 834 ? f_plane_restr ? ? # _struct.entry_id 8ZC1 _struct.title 'SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ZC1 _struct_keywords.text 'Spike protein, Antibody Fab fragment, Complex, VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA PGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP LQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; 332 2 PDB 8ZC1 8ZC1 ? 2 ? 1 3 PDB 8ZC1 8ZC1 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ZC1 B 1 ? 196 ? P0DTC2 332 ? 527 ? 332 527 2 2 8ZC1 C 1 ? 223 ? 8ZC1 1 ? 223 ? 1 223 3 3 8ZC1 E 1 ? 230 ? 8ZC1 1 ? 230 ? 1 230 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8ZC1 ASP B 8 ? UNP P0DTC2 GLY 339 variant 339 1 1 8ZC1 PHE B 40 ? UNP P0DTC2 SER 371 variant 371 2 1 8ZC1 PRO B 42 ? UNP P0DTC2 SER 373 variant 373 3 1 8ZC1 PHE B 44 ? UNP P0DTC2 SER 375 variant 375 4 1 8ZC1 ALA B 45 ? UNP P0DTC2 THR 376 variant 376 5 1 8ZC1 ASN B 74 ? UNP P0DTC2 ASP 405 variant 405 6 1 8ZC1 SER B 77 ? UNP P0DTC2 ARG 408 variant 408 7 1 8ZC1 ASN B 86 ? UNP P0DTC2 LYS 417 variant 417 8 1 8ZC1 LYS B 109 ? UNP P0DTC2 ASN 440 variant 440 9 1 8ZC1 ASN B 146 ? UNP P0DTC2 SER 477 variant 477 10 1 8ZC1 LYS B 147 ? UNP P0DTC2 THR 478 variant 478 11 1 8ZC1 ALA B 153 ? UNP P0DTC2 GLU 484 variant 484 12 1 8ZC1 ARG B 162 ? UNP P0DTC2 GLN 493 variant 493 13 1 8ZC1 ARG B 167 ? UNP P0DTC2 GLN 498 variant 498 14 1 8ZC1 TYR B 170 ? UNP P0DTC2 ASN 501 variant 501 15 1 8ZC1 HIS B 174 ? UNP P0DTC2 TYR 505 variant 505 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 52 ? ASN A 57 ? SER B 383 ASN B 388 1 ? 6 HELX_P HELX_P2 AA2 ASN A 74 ? ILE A 79 ? ASN B 405 ILE B 410 5 ? 6 HELX_P HELX_P3 AA3 ASN A 86 ? ASN A 91 ? ASN B 417 ASN B 422 1 ? 6 HELX_P HELX_P4 AA4 SER B 133 ? GLN B 137 ? SER C 133 GLN C 137 5 ? 5 HELX_P HELX_P5 AA5 THR B 192 ? HIS B 199 ? THR C 192 HIS C 199 1 ? 8 HELX_P HELX_P6 AA6 ARG C 87 ? THR C 91 ? ARG E 87 THR E 91 5 ? 5 HELX_P HELX_P7 AA7 CYS C 108 ? MET C 112 ? CYS E 108 MET E 112 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 101 SG ? ? B CYS 379 B CYS 432 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf2 disulf ? ? A CYS 149 SG ? ? ? 1_555 A CYS 157 SG ? ? B CYS 480 B CYS 488 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 89 SG ? ? C CYS 22 C CYS 89 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf4 disulf ? ? B CYS 145 SG ? ? ? 1_555 B CYS 204 SG ? ? C CYS 145 C CYS 204 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? C CYS 22 SG ? ? ? 1_555 C CYS 96 SG ? ? E CYS 22 E CYS 96 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? C CYS 103 SG ? ? ? 1_555 C CYS 108 SG ? ? E CYS 103 E CYS 108 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf7 disulf ? ? C CYS 154 SG ? ? ? 1_555 C CYS 210 SG ? ? E CYS 154 E CYS 210 1_555 ? ? ? ? ? ? ? 2.034 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 151 B . ? TYR 151 C PRO 152 B ? PRO 152 C 1 -1.07 2 PHE 160 C . ? PHE 160 E PRO 161 C ? PRO 161 E 1 0.10 3 GLU 162 C . ? GLU 162 E PRO 163 C ? PRO 163 E 1 -5.07 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 5 ? AA4 ? 4 ? AA5 ? 3 ? AA6 ? 4 ? AA7 ? 3 ? AA8 ? 4 ? AA9 ? 4 ? AB1 ? 4 ? AB2 ? 5 ? AB3 ? 5 ? AB4 ? 4 ? AB5 ? 4 ? AB6 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB2 1 2 ? anti-parallel AB2 2 3 ? anti-parallel AB2 3 4 ? anti-parallel AB2 4 5 ? anti-parallel AB3 1 2 ? anti-parallel AB3 2 3 ? anti-parallel AB3 3 4 ? anti-parallel AB3 4 5 ? anti-parallel AB4 1 2 ? anti-parallel AB4 2 3 ? anti-parallel AB4 3 4 ? anti-parallel AB5 1 2 ? anti-parallel AB5 2 3 ? anti-parallel AB5 3 4 ? anti-parallel AB6 1 2 ? anti-parallel AB6 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 23 ? LYS A 25 ? ASN B 354 LYS B 356 AA1 2 ALA A 66 ? ARG A 72 ? ALA B 397 ARG B 403 AA1 3 PRO A 176 ? LEU A 182 ? PRO B 507 LEU B 513 AA1 4 CYS A 101 ? TRP A 105 ? CYS B 432 TRP B 436 AA1 5 ALA A 45 ? LYS A 47 ? ALA B 376 LYS B 378 AA2 1 LEU A 121 ? ARG A 123 ? LEU B 452 ARG B 454 AA2 2 LEU A 161 ? SER A 163 ? LEU B 492 SER B 494 AA3 1 SER B 9 ? GLY B 12 ? SER C 9 GLY C 12 AA3 2 THR B 105 ? VAL B 109 ? THR C 105 VAL C 109 AA3 3 ASP B 86 ? ASP B 93 ? ASP C 86 ASP C 93 AA3 4 VAL B 34 ? GLN B 39 ? VAL C 34 GLN C 39 AA3 5 LYS B 46 ? ILE B 49 ? LYS C 46 ILE C 49 AA4 1 SER B 9 ? GLY B 12 ? SER C 9 GLY C 12 AA4 2 THR B 105 ? VAL B 109 ? THR C 105 VAL C 109 AA4 3 ASP B 86 ? ASP B 93 ? ASP C 86 ASP C 93 AA4 4 GLY B 98 ? VAL B 100 ? GLY C 98 VAL C 100 AA5 1 VAL B 18 ? SER B 23 ? VAL C 18 SER C 23 AA5 2 SER B 71 ? ILE B 76 ? SER C 71 ILE C 76 AA5 3 PHE B 63 ? LYS B 67 ? PHE C 63 LYS C 67 AA6 1 SER B 125 ? PHE B 129 ? SER C 125 PHE C 129 AA6 2 VAL B 144 ? PHE B 150 ? VAL C 144 PHE C 150 AA6 3 TYR B 183 ? LEU B 191 ? TYR C 183 LEU C 191 AA6 4 VAL B 170 ? THR B 172 ? VAL C 170 THR C 172 AA7 1 ALA B 141 ? THR B 142 ? ALA C 141 THR C 142 AA7 2 TYR B 183 ? LEU B 191 ? TYR C 183 LEU C 191 AA7 3 SER B 176 ? LYS B 177 ? SER C 176 LYS C 177 AA8 1 SER B 164 ? VAL B 166 ? SER C 164 VAL C 166 AA8 2 THR B 156 ? ALA B 161 ? THR C 156 ALA C 161 AA8 3 TYR B 202 ? HIS B 208 ? TYR C 202 HIS C 208 AA8 4 SER B 211 ? THR B 212 ? SER C 211 THR C 212 AA9 1 SER B 164 ? VAL B 166 ? SER C 164 VAL C 166 AA9 2 THR B 156 ? ALA B 161 ? THR C 156 ALA C 161 AA9 3 TYR B 202 ? HIS B 208 ? TYR C 202 HIS C 208 AA9 4 LYS B 215 ? VAL B 217 ? LYS C 215 VAL C 217 AB1 1 GLN C 3 ? GLN C 6 ? GLN E 3 GLN E 6 AB1 2 VAL C 20 ? SER C 25 ? VAL E 20 SER E 25 AB1 3 THR C 78 ? GLU C 82 ? THR E 78 GLU E 82 AB1 4 THR C 69 ? ASP C 73 ? THR E 69 ASP E 73 AB2 1 THR C 58 ? TYR C 60 ? THR E 58 TYR E 60 AB2 2 GLU C 46 ? ILE C 51 ? GLU E 46 ILE E 51 AB2 3 ILE C 34 ? GLN C 39 ? ILE E 34 GLN E 39 AB2 4 VAL C 93 ? SER C 99 ? VAL E 93 SER E 99 AB2 5 PHE C 114 ? TRP C 117 ? PHE E 114 TRP E 117 AB3 1 THR C 58 ? TYR C 60 ? THR E 58 TYR E 60 AB3 2 GLU C 46 ? ILE C 51 ? GLU E 46 ILE E 51 AB3 3 ILE C 34 ? GLN C 39 ? ILE E 34 GLN E 39 AB3 4 VAL C 93 ? SER C 99 ? VAL E 93 SER E 99 AB3 5 ALA C 121 ? LEU C 122 ? ALA E 121 LEU E 122 AB4 1 SER C 134 ? PRO C 137 ? SER E 134 PRO E 137 AB4 2 ALA C 150 ? LYS C 157 ? ALA E 150 LYS E 157 AB4 3 TYR C 190 ? VAL C 198 ? TYR E 190 VAL E 198 AB4 4 HIS C 178 ? THR C 179 ? HIS E 178 THR E 179 AB5 1 SER C 134 ? PRO C 137 ? SER E 134 PRO E 137 AB5 2 ALA C 150 ? LYS C 157 ? ALA E 150 LYS E 157 AB5 3 TYR C 190 ? VAL C 198 ? TYR E 190 VAL E 198 AB5 4 VAL C 183 ? LEU C 184 ? VAL E 183 LEU E 184 AB6 1 VAL C 166 ? TRP C 168 ? VAL E 166 TRP E 168 AB6 2 ILE C 209 ? VAL C 212 ? ILE E 209 VAL E 212 AB6 3 ASP C 222 ? LYS C 224 ? ASP E 222 LYS E 224 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 25 ? N LYS B 356 O ALA A 66 ? O ALA B 397 AA1 2 3 N ILE A 71 ? N ILE B 402 O TYR A 177 ? O TYR B 508 AA1 3 4 O LEU A 182 ? O LEU B 513 N CYS A 101 ? N CYS B 432 AA1 4 5 O ALA A 104 ? O ALA B 435 N ALA A 45 ? N ALA B 376 AA2 1 2 N TYR A 122 ? N TYR B 453 O ARG A 162 ? O ARG B 493 AA3 1 2 N ALA B 10 ? N ALA C 10 O LYS B 106 ? O LYS C 106 AA3 2 3 O THR B 105 ? O THR C 105 N TYR B 87 ? N TYR C 87 AA3 3 4 O ALA B 90 ? O ALA C 90 N TYR B 35 ? N TYR C 35 AA3 4 5 N GLN B 38 ? N GLN C 38 O LYS B 46 ? O LYS C 46 AA4 1 2 N ALA B 10 ? N ALA C 10 O LYS B 106 ? O LYS C 106 AA4 2 3 O THR B 105 ? O THR C 105 N TYR B 87 ? N TYR C 87 AA4 3 4 N ALA B 91 ? N ALA C 91 O VAL B 100 ? O VAL C 100 AA5 1 2 N ILE B 20 ? N ILE C 20 O LEU B 74 ? O LEU C 74 AA5 2 3 O ALA B 75 ? O ALA C 75 N PHE B 64 ? N PHE C 64 AA6 1 2 N SER B 125 ? N SER C 125 O SER B 148 ? O SER C 148 AA6 2 3 N CYS B 145 ? N CYS C 145 O SER B 187 ? O SER C 187 AA6 3 4 O TYR B 188 ? O TYR C 188 N GLU B 171 ? N GLU C 171 AA7 1 2 N ALA B 141 ? N ALA C 141 O LEU B 191 ? O LEU C 191 AA7 2 3 O ALA B 184 ? O ALA C 184 N SER B 176 ? N SER C 176 AA8 1 2 O VAL B 166 ? O VAL C 166 N TRP B 159 ? N TRP C 159 AA8 2 3 N THR B 156 ? N THR C 156 O THR B 207 ? O THR C 207 AA8 3 4 N HIS B 208 ? N HIS C 208 O SER B 211 ? O SER C 211 AA9 1 2 O VAL B 166 ? O VAL C 166 N TRP B 159 ? N TRP C 159 AA9 2 3 N THR B 156 ? N THR C 156 O THR B 207 ? O THR C 207 AA9 3 4 N TYR B 202 ? N TYR C 202 O VAL B 217 ? O VAL C 217 AB1 1 2 N VAL C 5 ? N VAL E 5 O LYS C 23 ? O LYS E 23 AB1 2 3 N CYS C 22 ? N CYS E 22 O VAL C 79 ? O VAL E 79 AB1 3 4 O GLU C 82 ? O GLU E 82 N THR C 69 ? N THR E 69 AB2 1 2 O ASN C 59 ? O ASN E 59 N TRP C 50 ? N TRP E 50 AB2 2 3 O GLU C 46 ? O GLU E 46 N ARG C 38 ? N ARG E 38 AB2 3 4 N VAL C 37 ? N VAL E 37 O PHE C 95 ? O PHE E 95 AB2 4 5 N ARG C 98 ? N ARG E 98 O ASP C 115 ? O ASP E 115 AB3 1 2 O ASN C 59 ? O ASN E 59 N TRP C 50 ? N TRP E 50 AB3 2 3 O GLU C 46 ? O GLU E 46 N ARG C 38 ? N ARG E 38 AB3 3 4 N VAL C 37 ? N VAL E 37 O PHE C 95 ? O PHE E 95 AB3 4 5 N TYR C 94 ? N TYR E 94 O ALA C 121 ? O ALA E 121 AB4 1 2 N PHE C 136 ? N PHE E 136 O LEU C 155 ? O LEU E 155 AB4 2 3 N ALA C 150 ? N ALA E 150 O VAL C 198 ? O VAL E 198 AB4 3 4 O VAL C 195 ? O VAL E 195 N HIS C 178 ? N HIS E 178 AB5 1 2 N PHE C 136 ? N PHE E 136 O LEU C 155 ? O LEU E 155 AB5 2 3 N ALA C 150 ? N ALA E 150 O VAL C 198 ? O VAL E 198 AB5 3 4 O SER C 191 ? O SER E 191 N VAL C 183 ? N VAL E 183 AB6 1 2 N SER C 167 ? N SER E 167 O ASN C 211 ? O ASN E 211 AB6 2 3 N CYS C 210 ? N CYS E 210 O LYS C 223 ? O LYS E 223 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 370 ? ? -99.58 34.40 2 1 PHE B 371 ? ? -118.73 -169.63 3 1 ASN C 52 ? ? 71.94 -12.02 4 1 ASP C 53 ? ? -146.69 10.89 5 1 GLU C 84 ? ? -91.90 52.87 6 1 ASP C 162 ? ? 55.55 -98.76 7 1 PRO E 53 ? ? -84.62 41.69 8 1 THR E 77 ? ? 39.45 50.88 9 1 SER E 107 ? ? -93.18 53.03 10 1 SER E 126 ? ? 77.59 151.18 11 1 PRO E 199 ? ? -68.79 -179.92 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8ZC1 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8ZC1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.17 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 239007 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_imaging.entry_id 8ZC1 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8ZC1 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 295 _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8ZC1 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B ILE 332 ? A ILE 1 2 1 Y 1 B THR 333 ? A THR 2 3 1 Y 1 B ASN 334 ? A ASN 3 4 1 Y 1 B LEU 335 ? A LEU 4 5 1 Y 1 B CYS 336 ? A CYS 5 6 1 Y 1 B PRO 337 ? A PRO 6 7 1 Y 1 B PHE 338 ? A PHE 7 8 1 Y 1 B ASP 339 ? A ASP 8 9 1 Y 1 B GLU 340 ? A GLU 9 10 1 Y 1 B ILE 358 ? A ILE 27 11 1 Y 1 B SER 359 ? A SER 28 12 1 Y 1 B ASN 360 ? A ASN 29 13 1 Y 1 B CYS 361 ? A CYS 30 14 1 Y 1 B VAL 362 ? A VAL 31 15 1 Y 1 B ALA 363 ? A ALA 32 16 1 Y 1 B ASP 364 ? A ASP 33 17 1 Y 1 B TYR 365 ? A TYR 34 18 1 Y 1 B CYS 391 ? A CYS 60 19 1 Y 1 B PHE 392 ? A PHE 61 20 1 Y 1 B THR 393 ? A THR 62 21 1 Y 1 B ASN 394 ? A ASN 63 22 1 Y 1 B GLU 516 ? A GLU 185 23 1 Y 1 B LEU 517 ? A LEU 186 24 1 Y 1 B LEU 518 ? A LEU 187 25 1 Y 1 B HIS 519 ? A HIS 188 26 1 Y 1 B ALA 520 ? A ALA 189 27 1 Y 1 B PRO 521 ? A PRO 190 28 1 Y 1 B ALA 522 ? A ALA 191 29 1 Y 1 B THR 523 ? A THR 192 30 1 Y 1 B VAL 524 ? A VAL 193 31 1 Y 1 B CYS 525 ? A CYS 194 32 1 Y 1 B GLY 526 ? A GLY 195 33 1 Y 1 B PRO 527 ? A PRO 196 34 1 Y 1 C GLN 1 ? B GLN 1 35 1 Y 1 C GLY 111 ? B GLY 111 36 1 Y 1 C THR 112 ? B THR 112 37 1 Y 1 C LYS 113 ? B LYS 113 38 1 Y 1 C LEU 114 ? B LEU 114 39 1 Y 1 C THR 115 ? B THR 115 40 1 Y 1 C VAL 116 ? B VAL 116 41 1 Y 1 C LEU 117 ? B LEU 117 42 1 Y 1 C CYS 222 ? B CYS 222 43 1 Y 1 C SER 223 ? B SER 223 44 1 Y 1 E GLU 1 ? C GLU 1 45 1 Y 1 E SER 142 ? C SER 142 46 1 Y 1 E LYS 143 ? C LYS 143 47 1 Y 1 E SER 144 ? C SER 144 48 1 Y 1 E THR 145 ? C THR 145 49 1 Y 1 E SER 146 ? C SER 146 50 1 Y 1 E GLY 147 ? C GLY 147 51 1 Y 1 E GLY 148 ? C GLY 148 52 1 Y 1 E CYS 230 ? C CYS 230 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Other government' ? EKPG21-06 1 'Other government' ? SRPG22-002 2 'Other government' ? 2021A1515011289 3 # _atom_sites.entry_id 8ZC1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_