HEADER VIRAL PROTEIN/IMMUNE SYSTEM 28-APR-24 8ZC5 TITLE SARS-COV-2 OMICRON BA.4 SPIKE TRIMER (6P) IN COMPLEX WITH D1F6 FAB, TITLE 2 FOCUSED REFINEMENT OF RBD REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RBD; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LIGHT CHAIN OF D1F6 FAB; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HEAVY CHAIN OF D1F6 FAB; COMPND 12 CHAIN: E, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 STRAIN: OMICRON/BA.4; SOURCE 7 GENE: S, 2; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 20 MOL_ID: 3; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 25 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS SPIKE PROTEIN, ANTIBODY FAB FRAGMENT, COMPLEX, VIRAL PROTEIN/IMMUNE KEYWDS 2 SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR B.LIU,X.GAO,Z.LI,Q.CHEN,J.HE,X.XIONG REVDAT 2 12-JUN-24 8ZC5 1 JRNL REVDAT 1 15-MAY-24 8ZC5 0 JRNL AUTH B.LIU,X.NIU,Y.DENG,Z.ZHANG,Y.WANG,X.GAO,H.LIANG,Z.LI,Q.WANG, JRNL AUTH 2 Y.CHENG,Q.CHEN,S.HUANG,Y.PAN,M.SU,X.LIN,C.NIU,Y.CHEN,W.YANG, JRNL AUTH 3 Y.ZHANG,Q.YAN,J.HE,J.ZHAO,L.CHEN,X.XIONG JRNL TITL AN UNCONVENTIONAL VH1-2 ANTIBODY TOLERATES ESCAPE MUTATIONS JRNL TITL 2 AND SHOWS AN ANTIGENIC HOTSPOT ON SARS-COV-2 SPIKE. JRNL REF CELL REP V. 43 14265 2024 JRNL REFN ESSN 2211-1247 JRNL PMID 38805396 JRNL DOI 10.1016/J.CELREP.2024.114265 REMARK 2 REMARK 2 RESOLUTION. 3.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.910 REMARK 3 NUMBER OF PARTICLES : 347846 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8ZC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 01-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1300047399. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SARS-COV-2 OMICRON BA.4 SPIKE REMARK 245 TRIMER (6P) IN COMPLEX WITH REMARK 245 D1F6 FAB, FOCUSED REFINEMENT OF REMARK 245 RBD REGION REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE B 332 REMARK 465 THR B 333 REMARK 465 ASN B 334 REMARK 465 LEU B 335 REMARK 465 CYS B 336 REMARK 465 PRO B 337 REMARK 465 SER B 359 REMARK 465 ASN B 360 REMARK 465 CYS B 361 REMARK 465 VAL B 362 REMARK 465 ALA B 363 REMARK 465 ASP B 364 REMARK 465 TYR B 365 REMARK 465 CYS B 391 REMARK 465 PHE B 392 REMARK 465 THR B 393 REMARK 465 GLU B 516 REMARK 465 LEU B 517 REMARK 465 LEU B 518 REMARK 465 HIS B 519 REMARK 465 ALA B 520 REMARK 465 PRO B 521 REMARK 465 ALA B 522 REMARK 465 THR B 523 REMARK 465 VAL B 524 REMARK 465 CYS B 525 REMARK 465 GLY B 526 REMARK 465 PRO B 527 REMARK 465 GLN C 1 REMARK 465 GLN D 1 REMARK 465 GLU E 1 REMARK 465 SER E 126 REMARK 465 SER E 127 REMARK 465 GLU F 1 REMARK 465 SER F 126 REMARK 465 SER F 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 343 30.27 -95.36 REMARK 500 PRO A 384 45.61 -82.96 REMARK 500 ASN A 439 48.75 -90.47 REMARK 500 PHE B 371 -169.69 -118.29 REMARK 500 ASN B 417 -82.31 -105.81 REMARK 500 LEU C 48 -54.87 -120.30 REMARK 500 ASN C 52 -4.55 75.26 REMARK 500 ASN D 52 -9.80 71.92 REMARK 500 PRO E 53 43.31 -83.73 REMARK 500 THR E 77 40.55 39.49 REMARK 500 TYR E 102 116.02 -160.24 REMARK 500 SER E 107 57.88 -97.20 REMARK 500 PRO F 53 45.36 -79.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-39923 RELATED DB: EMDB REMARK 900 SARS-COV-2 OMICRON BA.4 SPIKE TRIMER (6P) IN COMPLEX WITH D1F6 FAB, REMARK 900 FOCUSED REFINEMENT OF RBD REGION DBREF 8ZC5 A 332 527 UNP P0DTC2 SPIKE_SARS2 332 527 DBREF 8ZC5 B 332 527 UNP P0DTC2 SPIKE_SARS2 332 527 DBREF 8ZC5 C 1 110 PDB 8ZC5 8ZC5 1 110 DBREF 8ZC5 D 1 110 PDB 8ZC5 8ZC5 1 110 DBREF 8ZC5 E 1 127 PDB 8ZC5 8ZC5 1 127 DBREF 8ZC5 F 1 127 PDB 8ZC5 8ZC5 1 127 SEQADV 8ZC5 ASP A 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 8ZC5 PHE A 371 UNP P0DTC2 SER 371 VARIANT SEQADV 8ZC5 PRO A 373 UNP P0DTC2 SER 373 VARIANT SEQADV 8ZC5 PHE A 375 UNP P0DTC2 SER 375 VARIANT SEQADV 8ZC5 ALA A 376 UNP P0DTC2 THR 376 VARIANT SEQADV 8ZC5 ASN A 405 UNP P0DTC2 ASP 405 VARIANT SEQADV 8ZC5 SER A 408 UNP P0DTC2 ARG 408 VARIANT SEQADV 8ZC5 ASN A 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 8ZC5 LYS A 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 8ZC5 ARG A 452 UNP P0DTC2 LEU 452 VARIANT SEQADV 8ZC5 ASN A 477 UNP P0DTC2 SER 477 VARIANT SEQADV 8ZC5 LYS A 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8ZC5 ALA A 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 8ZC5 VAL A 486 UNP P0DTC2 PHE 486 VARIANT SEQADV 8ZC5 ARG A 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 8ZC5 TYR A 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8ZC5 HIS A 505 UNP P0DTC2 TYR 505 VARIANT SEQADV 8ZC5 ASP B 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 8ZC5 PHE B 371 UNP P0DTC2 SER 371 VARIANT SEQADV 8ZC5 PRO B 373 UNP P0DTC2 SER 373 VARIANT SEQADV 8ZC5 PHE B 375 UNP P0DTC2 SER 375 VARIANT SEQADV 8ZC5 ALA B 376 UNP P0DTC2 THR 376 VARIANT SEQADV 8ZC5 ASN B 405 UNP P0DTC2 ASP 405 VARIANT SEQADV 8ZC5 SER B 408 UNP P0DTC2 ARG 408 VARIANT SEQADV 8ZC5 ASN B 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 8ZC5 LYS B 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 8ZC5 ARG B 452 UNP P0DTC2 LEU 452 VARIANT SEQADV 8ZC5 ASN B 477 UNP P0DTC2 SER 477 VARIANT SEQADV 8ZC5 LYS B 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8ZC5 ALA B 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 8ZC5 VAL B 486 UNP P0DTC2 PHE 486 VARIANT SEQADV 8ZC5 ARG B 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 8ZC5 TYR B 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8ZC5 HIS B 505 UNP P0DTC2 TYR 505 VARIANT SEQRES 1 A 196 ILE THR ASN LEU CYS PRO PHE ASP GLU VAL PHE ASN ALA SEQRES 2 A 196 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 3 A 196 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 4 A 196 PHE ALA PRO PHE PHE ALA PHE LYS CYS TYR GLY VAL SER SEQRES 5 A 196 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 6 A 196 ALA ASP SER PHE VAL ILE ARG GLY ASN GLU VAL SER GLN SEQRES 7 A 196 ILE ALA PRO GLY GLN THR GLY ASN ILE ALA ASP TYR ASN SEQRES 8 A 196 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 9 A 196 TRP ASN SER ASN LYS LEU ASP SER LYS VAL GLY GLY ASN SEQRES 10 A 196 TYR ASN TYR ARG TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 11 A 196 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 12 A 196 ALA GLY ASN LYS PRO CYS ASN GLY VAL ALA GLY VAL ASN SEQRES 13 A 196 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE ARG PRO THR SEQRES 14 A 196 TYR GLY VAL GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 15 A 196 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 16 A 196 PRO SEQRES 1 B 196 ILE THR ASN LEU CYS PRO PHE ASP GLU VAL PHE ASN ALA SEQRES 2 B 196 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 3 B 196 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 4 B 196 PHE ALA PRO PHE PHE ALA PHE LYS CYS TYR GLY VAL SER SEQRES 5 B 196 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 6 B 196 ALA ASP SER PHE VAL ILE ARG GLY ASN GLU VAL SER GLN SEQRES 7 B 196 ILE ALA PRO GLY GLN THR GLY ASN ILE ALA ASP TYR ASN SEQRES 8 B 196 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 9 B 196 TRP ASN SER ASN LYS LEU ASP SER LYS VAL GLY GLY ASN SEQRES 10 B 196 TYR ASN TYR ARG TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 11 B 196 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 12 B 196 ALA GLY ASN LYS PRO CYS ASN GLY VAL ALA GLY VAL ASN SEQRES 13 B 196 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE ARG PRO THR SEQRES 14 B 196 TYR GLY VAL GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 15 B 196 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 16 B 196 PRO SEQRES 1 C 110 GLN PRO VAL LEU THR GLN PRO PRO SER ALA SER GLY PRO SEQRES 2 C 110 PRO GLY GLN SER VAL SER ILE SER CYS SER GLY SER ARG SEQRES 3 C 110 SER ASN ILE GLY THR ASN PHE VAL TYR TRP TYR GLN GLN SEQRES 4 C 110 LEU PRO GLY ALA ALA PRO LYS LEU LEU ILE TYR LYS ASN SEQRES 5 C 110 ASP GLN ARG PRO SER GLY VAL PRO GLU ARG PHE PHE GLY SEQRES 6 C 110 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 C 110 LEU ARG SER GLU ASP GLU VAL ASP TYR TYR CYS ALA ALA SEQRES 8 C 110 TRP ASP ASP SER LEU SER GLY HIS VAL PHE GLY ALA GLY SEQRES 9 C 110 THR LYS VAL THR VAL LEU SEQRES 1 D 110 GLN PRO VAL LEU THR GLN PRO PRO SER ALA SER GLY PRO SEQRES 2 D 110 PRO GLY GLN SER VAL SER ILE SER CYS SER GLY SER ARG SEQRES 3 D 110 SER ASN ILE GLY THR ASN PHE VAL TYR TRP TYR GLN GLN SEQRES 4 D 110 LEU PRO GLY ALA ALA PRO LYS LEU LEU ILE TYR LYS ASN SEQRES 5 D 110 ASP GLN ARG PRO SER GLY VAL PRO GLU ARG PHE PHE GLY SEQRES 6 D 110 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 D 110 LEU ARG SER GLU ASP GLU VAL ASP TYR TYR CYS ALA ALA SEQRES 8 D 110 TRP ASP ASP SER LEU SER GLY HIS VAL PHE GLY ALA GLY SEQRES 9 D 110 THR LYS VAL THR VAL LEU SEQRES 1 E 127 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 E 127 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 E 127 TYR ILE PHE SER ASP TYR ASN ILE HIS TRP VAL ARG GLN SEQRES 4 E 127 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 E 127 PRO ASP SER ASP ASP THR ASN TYR ALA GLN SER PHE GLN SEQRES 6 E 127 GLY ARG VAL THR MET THR ARG ASP THR SER ILE THR THR SEQRES 7 E 127 VAL TYR MET GLU LEU SER SER LEU ARG SER ASP ASP THR SEQRES 8 E 127 ALA VAL TYR PHE CYS ALA ARG SER VAL GLY TYR CYS SER SEQRES 9 E 127 LEU ASN SER CYS GLN ARG TRP MET TRP PHE ASP THR TRP SEQRES 10 E 127 GLY GLN GLY ALA LEU VAL THR VAL SER SER SEQRES 1 F 127 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 F 127 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 F 127 TYR ILE PHE SER ASP TYR ASN ILE HIS TRP VAL ARG GLN SEQRES 4 F 127 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 F 127 PRO ASP SER ASP ASP THR ASN TYR ALA GLN SER PHE GLN SEQRES 6 F 127 GLY ARG VAL THR MET THR ARG ASP THR SER ILE THR THR SEQRES 7 F 127 VAL TYR MET GLU LEU SER SER LEU ARG SER ASP ASP THR SEQRES 8 F 127 ALA VAL TYR PHE CYS ALA ARG SER VAL GLY TYR CYS SER SEQRES 9 F 127 LEU ASN SER CYS GLN ARG TRP MET TRP PHE ASP THR TRP SEQRES 10 F 127 GLY GLN GLY ALA LEU VAL THR VAL SER SER HET NAG A 601 14 HET NAG B 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 7 NAG 2(C8 H15 N O6) HELIX 1 AA1 PRO A 337 ASN A 343 1 7 HELIX 2 AA2 ARG A 403 VAL A 407 5 5 HELIX 3 AA3 GLY A 416 ASN A 422 1 7 HELIX 4 AA4 GLY A 502 GLN A 506 5 5 HELIX 5 AA5 ASP B 339 ASN B 343 1 5 HELIX 6 AA6 ASN B 405 ILE B 410 5 6 HELIX 7 AA7 GLY B 502 HIS B 505 5 4 HELIX 8 AA8 ARG D 80 GLU D 84 5 5 HELIX 9 AA9 ILE E 28 TYR E 32 5 5 HELIX 10 AB1 ALA E 61 GLN E 65 5 5 HELIX 11 AB2 ARG E 87 THR E 91 5 5 HELIX 12 AB3 CYS E 108 MET E 112 5 5 HELIX 13 AB4 ARG F 87 THR F 91 5 5 HELIX 14 AB5 CYS F 108 MET F 112 5 5 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 VAL A 395 ILE A 402 -1 O VAL A 395 N ILE A 358 SHEET 3 AA1 5 TYR A 508 SER A 514 -1 O VAL A 510 N PHE A 400 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 ALA A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 1 AA2 2 ARG A 452 ARG A 454 0 SHEET 2 AA2 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA3 2 TYR A 473 GLN A 474 0 SHEET 2 AA3 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA4 5 ASN B 354 ILE B 358 0 SHEET 2 AA4 5 VAL B 395 ARG B 403 -1 O ALA B 397 N LYS B 356 SHEET 3 AA4 5 PRO B 507 SER B 514 -1 O VAL B 512 N ASP B 398 SHEET 4 AA4 5 CYS B 432 TRP B 436 -1 N ILE B 434 O VAL B 511 SHEET 5 AA4 5 PHE B 374 PHE B 377 -1 N PHE B 375 O ALA B 435 SHEET 1 AA5 2 ARG B 452 ARG B 454 0 SHEET 2 AA5 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA6 2 TYR B 473 GLN B 474 0 SHEET 2 AA6 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SHEET 1 AA7 5 SER C 9 GLY C 12 0 SHEET 2 AA7 5 THR C 105 VAL C 109 1 O THR C 108 N GLY C 12 SHEET 3 AA7 5 ASP C 86 ASP C 93 -1 N TYR C 87 O THR C 105 SHEET 4 AA7 5 VAL C 34 GLN C 39 -1 N TYR C 35 O ALA C 90 SHEET 5 AA7 5 LYS C 46 ILE C 49 -1 O ILE C 49 N TRP C 36 SHEET 1 AA8 4 SER C 9 GLY C 12 0 SHEET 2 AA8 4 THR C 105 VAL C 109 1 O THR C 108 N GLY C 12 SHEET 3 AA8 4 ASP C 86 ASP C 93 -1 N TYR C 87 O THR C 105 SHEET 4 AA8 4 GLY C 98 VAL C 100 -1 O VAL C 100 N ALA C 91 SHEET 1 AA9 3 SER C 17 SER C 23 0 SHEET 2 AA9 3 SER C 71 SER C 77 -1 O ALA C 72 N CYS C 22 SHEET 3 AA9 3 PHE C 63 LYS C 67 -1 N PHE C 64 O ALA C 75 SHEET 1 AB1 2 SER D 9 ALA D 10 0 SHEET 2 AB1 2 LYS D 106 VAL D 107 1 O LYS D 106 N ALA D 10 SHEET 1 AB2 3 SER D 17 CYS D 22 0 SHEET 2 AB2 3 ALA D 72 SER D 77 -1 O LEU D 74 N ILE D 20 SHEET 3 AB2 3 PHE D 64 LYS D 67 -1 N PHE D 64 O ALA D 75 SHEET 1 AB3 4 PRO D 45 ILE D 49 0 SHEET 2 AB3 4 VAL D 34 GLN D 39 -1 N TRP D 36 O LEU D 48 SHEET 3 AB3 4 ASP D 86 ASP D 93 -1 O TYR D 88 N TYR D 37 SHEET 4 AB3 4 GLY D 98 PHE D 101 -1 O VAL D 100 N ALA D 91 SHEET 1 AB4 4 GLN E 3 GLN E 6 0 SHEET 2 AB4 4 VAL E 20 SER E 25 -1 O LYS E 23 N VAL E 5 SHEET 3 AB4 4 THR E 78 LEU E 83 -1 O VAL E 79 N CYS E 22 SHEET 4 AB4 4 VAL E 68 ASP E 73 -1 N THR E 69 O GLU E 82 SHEET 1 AB5 4 LEU E 45 TRP E 47 0 SHEET 2 AB5 4 ILE E 34 GLN E 39 -1 N ARG E 38 O GLU E 46 SHEET 3 AB5 4 ALA E 92 SER E 99 -1 O PHE E 95 N VAL E 37 SHEET 4 AB5 4 PHE E 114 TRP E 117 -1 O THR E 116 N ARG E 98 SHEET 1 AB6 4 LEU E 45 TRP E 47 0 SHEET 2 AB6 4 ILE E 34 GLN E 39 -1 N ARG E 38 O GLU E 46 SHEET 3 AB6 4 ALA E 92 SER E 99 -1 O PHE E 95 N VAL E 37 SHEET 4 AB6 4 ALA E 121 VAL E 123 -1 O VAL E 123 N ALA E 92 SHEET 1 AB7 4 LEU F 4 GLN F 6 0 SHEET 2 AB7 4 VAL F 18 ALA F 24 -1 O LYS F 23 N VAL F 5 SHEET 3 AB7 4 THR F 78 LEU F 83 -1 O MET F 81 N VAL F 20 SHEET 4 AB7 4 VAL F 68 THR F 71 -1 N THR F 69 O GLU F 82 SHEET 1 AB8 5 THR F 58 ASN F 59 0 SHEET 2 AB8 5 LEU F 45 ILE F 51 -1 N TRP F 50 O ASN F 59 SHEET 3 AB8 5 ASN F 33 GLN F 39 -1 N ARG F 38 O GLU F 46 SHEET 4 AB8 5 ALA F 92 SER F 99 -1 O PHE F 95 N VAL F 37 SHEET 5 AB8 5 PHE F 114 THR F 116 -1 O ASP F 115 N ARG F 98 SHEET 1 AB9 5 THR F 58 ASN F 59 0 SHEET 2 AB9 5 LEU F 45 ILE F 51 -1 N TRP F 50 O ASN F 59 SHEET 3 AB9 5 ASN F 33 GLN F 39 -1 N ARG F 38 O GLU F 46 SHEET 4 AB9 5 ALA F 92 SER F 99 -1 O PHE F 95 N VAL F 37 SHEET 5 AB9 5 ALA F 121 VAL F 123 -1 O VAL F 123 N ALA F 92 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.05 SSBOND 5 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 6 CYS B 480 CYS B 488 1555 1555 2.03 SSBOND 7 CYS C 22 CYS C 89 1555 1555 2.03 SSBOND 8 CYS D 22 CYS D 89 1555 1555 2.03 SSBOND 9 CYS E 22 CYS E 96 1555 1555 2.03 SSBOND 10 CYS E 103 CYS E 108 1555 1555 2.03 SSBOND 11 CYS F 22 CYS F 96 1555 1555 2.03 SSBOND 12 CYS F 103 CYS F 108 1555 1555 2.03 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.43 LINK ND2 ASN B 343 C1 NAG B 601 1555 1555 1.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000