HEADER TRANSFERASE 28-APR-24 8ZC8 TITLE THE STRUCTURE OF MITM AND MITOMYCIN A WITH SAH IN MITOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITM; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE SEQUENCE OF ORGANISM STREPTOMYCES CAESPITOSUS IS COMPND 6 NOT AVAILABLE, REPLACED BY Q9X5Q9 TEMPORARILY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CAESPITOSUS; SOURCE 3 ORGANISM_TAXID: 53502; SOURCE 4 GENE: MITM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SAM-DEPENDENT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.XIA,D.DONG REVDAT 1 27-NOV-24 8ZC8 0 JRNL AUTH M.XIA,D.DONG JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF MITM, WHICH CATALYZES THE JRNL TITL 2 POST-MITOSANE MODIFICATION IN MITOMYCIN BIOSYNTHESIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.1_5286: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.750 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3400 - 6.7400 1.00 1420 149 0.1626 0.1831 REMARK 3 2 6.7400 - 5.3500 1.00 1350 145 0.2032 0.1786 REMARK 3 3 5.3500 - 4.6800 1.00 1339 146 0.1753 0.1980 REMARK 3 4 4.6800 - 4.2500 1.00 1318 146 0.1692 0.2117 REMARK 3 5 4.2500 - 3.9500 1.00 1309 142 0.2101 0.2206 REMARK 3 6 3.9500 - 3.7100 1.00 1321 144 0.2366 0.2679 REMARK 3 7 3.7100 - 3.5300 1.00 1317 141 0.2537 0.3137 REMARK 3 8 3.5300 - 3.3700 1.00 1306 139 0.2951 0.3063 REMARK 3 9 3.3700 - 3.2400 1.00 1325 143 0.3199 0.3625 REMARK 3 10 3.2400 - 3.1300 1.00 1294 144 0.3285 0.3156 REMARK 3 11 3.1300 - 3.0300 1.00 1299 141 0.3404 0.3387 REMARK 3 12 3.0300 - 2.9500 1.00 1308 139 0.3359 0.3841 REMARK 3 13 2.9500 - 2.8700 1.00 1291 139 0.3652 0.4099 REMARK 3 14 2.8700 - 2.8000 1.00 1316 143 0.4132 0.4059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4294 REMARK 3 ANGLE : 1.472 5844 REMARK 3 CHIRALITY : 0.065 659 REMARK 3 PLANARITY : 0.026 775 REMARK 3 DIHEDRAL : 16.845 1538 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 52.3638 -6.2356 9.3857 REMARK 3 T TENSOR REMARK 3 T11: 0.7930 T22: 0.4723 REMARK 3 T33: 0.6156 T12: -0.0631 REMARK 3 T13: 0.0864 T23: -0.1322 REMARK 3 L TENSOR REMARK 3 L11: 1.5938 L22: 0.8137 REMARK 3 L33: 0.9410 L12: 0.7232 REMARK 3 L13: -0.6619 L23: -0.7608 REMARK 3 S TENSOR REMARK 3 S11: 0.2408 S12: -0.1899 S13: 0.2327 REMARK 3 S21: 0.3640 S22: -0.0434 S23: 0.1542 REMARK 3 S31: -0.2833 S32: 0.1582 S33: -0.1717 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 05-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1300047421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20544 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8ZC7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 10% W/V ETHYLENE REMARK 280 GLYCOL, 0.2 M SODIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.25700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.51400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.51400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.25700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 251 REMARK 465 PHE A 252 REMARK 465 GLY A 253 REMARK 465 GLU A 254 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 HIS B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 ASN A 242 CG OD1 ND2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 GLN B 49 CG CD OE1 NE2 REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 GLN B 192 CG CD OE1 NE2 REMARK 470 ARG B 193 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 235 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 241 CG1 CG2 CD1 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 GLN B 246 CG CD OE1 NE2 REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 248 CG CD1 CD2 REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 THR B 250 OG1 CG2 REMARK 470 PHE B 252 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 470 MET B 256 CG SD CE REMARK 470 GLN B 259 CG CD OE1 NE2 REMARK 470 PHE B 260 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 176 OH TYR A 208 1.99 REMARK 500 CA SER B 7 O HOH B 401 2.08 REMARK 500 N LEU A 6 OE2 GLU A 8 2.14 REMARK 500 O ILE B 225 OG1 THR B 229 2.17 REMARK 500 OG SER A 16 OD2 ASP A 129 2.17 REMARK 500 OH TYR B 23 NE2 HIS B 151 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 121 OD2 ASP B 121 5554 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 182 C LEU B 183 N 0.181 REMARK 500 LEU B 183 C ALA B 184 N 0.193 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 182 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 29 0.59 -69.72 REMARK 500 LEU A 38 68.96 -100.40 REMARK 500 VAL A 257 24.93 -140.91 REMARK 500 PHE A 260 71.29 54.96 REMARK 500 SER B 7 34.99 74.22 REMARK 500 THR B 27 45.49 -94.48 REMARK 500 SER B 33 -60.23 -103.10 REMARK 500 GLU B 136 152.60 -49.07 REMARK 500 PRO B 182 133.60 -36.91 REMARK 500 GLU B 221 115.00 -161.29 REMARK 500 THR B 229 -52.40 -122.53 REMARK 500 SER B 244 39.06 -140.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 74 0.22 SIDE CHAIN REMARK 500 ARG A 240 0.17 SIDE CHAIN REMARK 500 ARG A 247 0.28 SIDE CHAIN REMARK 500 ARG B 213 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8ZC8 A 1 283 UNP Q9X5Q9 Q9X5Q9_STRLA 1 283 DBREF 8ZC8 B 1 283 UNP Q9X5Q9 Q9X5Q9_STRLA 1 283 SEQRES 1 A 283 MET PRO HIS SER GLU LEU SER GLU LEU PRO MET PRO SER SEQRES 2 A 283 PRO ALA SER GLU GLU VAL GLY ALA LEU TYR ASP ARG PHE SEQRES 3 A 283 THR ALA LEU GLY ALA ALA SER LEU GLY GLU ASN LEU HIS SEQRES 4 A 283 PHE GLY TYR TRP ASP SER PRO ASP SER GLN VAL PRO LEU SEQRES 5 A 283 ALA GLU ALA THR ASP ARG LEU THR ASP MET MET ALA GLU SEQRES 6 A 283 ARG LEU ARG ILE GLY ALA GLY SER ARG VAL LEU ASP LEU SEQRES 7 A 283 GLY CYS GLY VAL GLY THR PRO GLY VAL ARG ILE ALA ARG SEQRES 8 A 283 LEU SER GLY ALA HIS VAL THR GLY ILE SER VAL SER HIS SEQRES 9 A 283 GLU GLN VAL VAL ARG ALA ASN ALA LEU ALA GLU GLU ALA SEQRES 10 A 283 GLY LEU ALA ASP ARG ALA ARG PHE GLN ARG ALA ASP ALA SEQRES 11 A 283 MET ASP LEU PRO PHE GLU ASP GLU SER PHE ASP ALA VAL SEQRES 12 A 283 ILE ALA LEU GLU SER ILE ILE HIS MET PRO ASP ARG ALA SEQRES 13 A 283 GLN VAL LEU ALA GLN VAL GLY ARG VAL LEU ARG PRO GLY SEQRES 14 A 283 GLY ARG LEU VAL LEU THR ASP PHE PHE GLU ARG ALA PRO SEQRES 15 A 283 LEU ALA PRO GLU GLY ARG ALA ALA VAL GLN ARG TYR LEU SEQRES 16 A 283 HIS ASP PHE MET MET THR MET VAL SER ALA GLU ALA TYR SEQRES 17 A 283 PRO PRO LEU LEU ARG GLY ALA GLY LEU TRP LEU GLU GLU SEQRES 18 A 283 PHE LEU ASP ILE SER ASP GLN THR LEU GLU LYS THR PHE SEQRES 19 A 283 ARG LEU LEU SER GLU ARG ILE ASN SER SER LYS GLN ARG SEQRES 20 A 283 LEU GLU THR GLN PHE GLY GLU GLU MET VAL ASN GLN PHE SEQRES 21 A 283 ASP PRO GLY ASP LEU VAL GLY VAL LYS GLU PHE GLY TYR SEQRES 22 A 283 LEU LEU LEU VAL ALA GLN ARG PRO GLY LYS SEQRES 1 B 283 MET PRO HIS SER GLU LEU SER GLU LEU PRO MET PRO SER SEQRES 2 B 283 PRO ALA SER GLU GLU VAL GLY ALA LEU TYR ASP ARG PHE SEQRES 3 B 283 THR ALA LEU GLY ALA ALA SER LEU GLY GLU ASN LEU HIS SEQRES 4 B 283 PHE GLY TYR TRP ASP SER PRO ASP SER GLN VAL PRO LEU SEQRES 5 B 283 ALA GLU ALA THR ASP ARG LEU THR ASP MET MET ALA GLU SEQRES 6 B 283 ARG LEU ARG ILE GLY ALA GLY SER ARG VAL LEU ASP LEU SEQRES 7 B 283 GLY CYS GLY VAL GLY THR PRO GLY VAL ARG ILE ALA ARG SEQRES 8 B 283 LEU SER GLY ALA HIS VAL THR GLY ILE SER VAL SER HIS SEQRES 9 B 283 GLU GLN VAL VAL ARG ALA ASN ALA LEU ALA GLU GLU ALA SEQRES 10 B 283 GLY LEU ALA ASP ARG ALA ARG PHE GLN ARG ALA ASP ALA SEQRES 11 B 283 MET ASP LEU PRO PHE GLU ASP GLU SER PHE ASP ALA VAL SEQRES 12 B 283 ILE ALA LEU GLU SER ILE ILE HIS MET PRO ASP ARG ALA SEQRES 13 B 283 GLN VAL LEU ALA GLN VAL GLY ARG VAL LEU ARG PRO GLY SEQRES 14 B 283 GLY ARG LEU VAL LEU THR ASP PHE PHE GLU ARG ALA PRO SEQRES 15 B 283 LEU ALA PRO GLU GLY ARG ALA ALA VAL GLN ARG TYR LEU SEQRES 16 B 283 HIS ASP PHE MET MET THR MET VAL SER ALA GLU ALA TYR SEQRES 17 B 283 PRO PRO LEU LEU ARG GLY ALA GLY LEU TRP LEU GLU GLU SEQRES 18 B 283 PHE LEU ASP ILE SER ASP GLN THR LEU GLU LYS THR PHE SEQRES 19 B 283 ARG LEU LEU SER GLU ARG ILE ASN SER SER LYS GLN ARG SEQRES 20 B 283 LEU GLU THR GLN PHE GLY GLU GLU MET VAL ASN GLN PHE SEQRES 21 B 283 ASP PRO GLY ASP LEU VAL GLY VAL LYS GLU PHE GLY TYR SEQRES 22 B 283 LEU LEU LEU VAL ALA GLN ARG PRO GLY LYS HET SAH A 301 26 HET SAH B 301 26 HET MQA B 302 25 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM MQA [(1AS,8S,8AR,8BS)-6,8A-DIMETHOXY-5-METHYL-4,7-DIOXO-1, HETNAM 2 MQA 1A,2,4,7,8,8A,8B-OCTAHYDROAZIRENO[2',3':3,4]PYRROLO[1, HETNAM 3 MQA 2-A]INDOL-8-YL]METHYL CARBAMATE HETSYN MQA MITOMYCIN A FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 MQA C16 H19 N3 O6 FORMUL 6 HOH *4(H2 O) HELIX 1 AA1 ALA A 15 LEU A 29 1 15 HELIX 2 AA2 PRO A 51 ARG A 68 1 18 HELIX 3 AA3 GLY A 83 GLY A 94 1 12 HELIX 4 AA4 SER A 103 ALA A 117 1 15 HELIX 5 AA5 SER A 148 MET A 152 5 5 HELIX 6 AA6 ASP A 154 VAL A 165 1 12 HELIX 7 AA7 ALA A 184 PHE A 198 1 15 HELIX 8 AA8 ALA A 207 GLY A 214 1 8 HELIX 9 AA9 ILE A 225 LEU A 248 1 24 HELIX 10 AB1 ASP A 261 VAL A 266 5 6 HELIX 11 AB2 ALA B 15 THR B 27 1 13 HELIX 12 AB3 PRO B 51 ARG B 68 1 18 HELIX 13 AB4 GLY B 83 GLY B 94 1 12 HELIX 14 AB5 SER B 103 ALA B 117 1 15 HELIX 15 AB6 SER B 148 MET B 152 5 5 HELIX 16 AB7 ASP B 154 VAL B 165 1 12 HELIX 17 AB8 ALA B 184 GLU B 186 5 3 HELIX 18 AB9 GLY B 187 PHE B 198 1 12 HELIX 19 AC1 ALA B 207 GLY B 216 1 10 HELIX 20 AC2 ILE B 225 SER B 243 1 19 HELIX 21 AC3 SER B 244 GLN B 246 5 3 HELIX 22 AC4 ARG B 247 PHE B 252 1 6 HELIX 23 AC5 PHE B 252 ASP B 261 1 10 HELIX 24 AC6 PRO B 262 VAL B 266 5 5 SHEET 1 AA114 ALA A 123 ARG A 127 0 SHEET 2 AA114 HIS A 96 SER A 101 1 N VAL A 97 O ARG A 124 SHEET 3 AA114 ARG A 74 LEU A 78 1 N VAL A 75 O THR A 98 SHEET 4 AA114 PHE A 140 ALA A 145 1 O ALA A 142 N LEU A 76 SHEET 5 AA114 LEU A 166 GLU A 179 1 O VAL A 173 N ALA A 145 SHEET 6 AA114 PHE A 271 GLN A 279 -1 O LEU A 274 N ASP A 176 SHEET 7 AA114 TRP A 218 ASP A 224 -1 N TRP A 218 O GLN A 279 SHEET 8 AA114 TRP B 218 ASP B 224 -1 O PHE B 222 N PHE A 222 SHEET 9 AA114 PHE B 271 GLN B 279 -1 O LEU B 275 N LEU B 223 SHEET 10 AA114 LEU B 166 GLU B 179 -1 N PHE B 178 O GLY B 272 SHEET 11 AA114 PHE B 140 ALA B 145 1 N ALA B 145 O VAL B 173 SHEET 12 AA114 ARG B 74 LEU B 78 1 N LEU B 76 O ALA B 142 SHEET 13 AA114 HIS B 96 SER B 101 1 O HIS B 96 N VAL B 75 SHEET 14 AA114 ALA B 123 ARG B 127 1 O GLN B 126 N GLY B 99 CRYST1 113.953 113.953 108.771 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008776 0.005067 0.000000 0.00000 SCALE2 0.000000 0.010133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009194 0.00000