HEADER IMMUNE SYSTEM 30-APR-24 8ZCK TITLE SERIAL FEMTOSECOND CRYSTALLOGRAPHY STRUCTURE OF FC FRAGMENT OF HUMAN TITLE 2 IGG1 FROM BIOSIMILAR VEGF-TRAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FC FRAGMENT; COMPND 5 SYNONYM: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN NIE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS FUSION PROTEIN, IMMUNOGLOBULIN, N-GLYCANS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.DESTAN,H.DEMIRCI REVDAT 2 16-OCT-24 8ZCK 1 REMARK REVDAT 1 08-MAY-24 8ZCK 0 JRNL AUTH E.DESTAN,H.DEMIRCI JRNL TITL SERIAL FEMTOSECOND CRYSTALLOGRAPHY STRUCTURE OF FC FRAGMENT JRNL TITL 2 OF HUMAN IGG1 FROM VEGF-TRAP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 35449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.420 REMARK 3 FREE R VALUE TEST SET COUNT : 859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2000 - 3.6300 0.98 6665 166 0.1630 0.2000 REMARK 3 2 3.6300 - 2.8800 0.99 6474 160 0.1693 0.2142 REMARK 3 3 2.8800 - 2.5200 0.97 6231 155 0.2060 0.2414 REMARK 3 4 2.5200 - 2.2900 0.91 5850 146 0.2414 0.3230 REMARK 3 5 2.2900 - 2.1300 0.81 5221 129 0.3062 0.3208 REMARK 3 6 2.1300 - 2.0000 0.65 4149 103 0.4009 0.3660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3640 REMARK 3 ANGLE : 0.681 4967 REMARK 3 CHIRALITY : 0.072 600 REMARK 3 PLANARITY : 0.005 612 REMARK 3 DIHEDRAL : 12.673 1419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.2430 12.6226 8.5218 REMARK 3 T TENSOR REMARK 3 T11: 2.3655 T22: 0.6234 REMARK 3 T33: 0.4695 T12: -0.3770 REMARK 3 T13: 0.2648 T23: 0.1266 REMARK 3 L TENSOR REMARK 3 L11: 1.5567 L22: 2.0454 REMARK 3 L33: 4.5369 L12: 0.3588 REMARK 3 L13: 0.2554 L23: -0.6267 REMARK 3 S TENSOR REMARK 3 S11: -0.6670 S12: 0.7313 S13: 0.4354 REMARK 3 S21: -3.6062 S22: 0.2564 S23: 0.0421 REMARK 3 S31: -0.5032 S32: 0.2085 S33: -0.1890 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1581 7.0349 40.2294 REMARK 3 T TENSOR REMARK 3 T11: 0.2162 T22: 0.3349 REMARK 3 T33: 0.3645 T12: 0.0331 REMARK 3 T13: 0.0261 T23: -0.0643 REMARK 3 L TENSOR REMARK 3 L11: 5.1540 L22: 3.3019 REMARK 3 L33: 3.4477 L12: 0.5730 REMARK 3 L13: 1.4657 L23: 0.7343 REMARK 3 S TENSOR REMARK 3 S11: -0.1809 S12: -0.6430 S13: 0.4368 REMARK 3 S21: 0.2640 S22: 0.1085 S23: -0.0113 REMARK 3 S31: -0.0388 S32: -0.0180 S33: 0.0839 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 222 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7824 -14.5261 20.3060 REMARK 3 T TENSOR REMARK 3 T11: 0.2693 T22: 0.3186 REMARK 3 T33: 0.4123 T12: -0.0404 REMARK 3 T13: 0.0380 T23: -0.0841 REMARK 3 L TENSOR REMARK 3 L11: 6.0086 L22: 3.6561 REMARK 3 L33: 8.9126 L12: 0.0391 REMARK 3 L13: 3.1598 L23: -1.3100 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: 0.1077 S13: -0.4166 REMARK 3 S21: -0.3072 S22: -0.0368 S23: 0.0374 REMARK 3 S31: 0.4658 S32: -0.5686 S33: -0.0046 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7323 -15.4853 1.6647 REMARK 3 T TENSOR REMARK 3 T11: 0.6334 T22: 0.9673 REMARK 3 T33: 0.5182 T12: -0.0684 REMARK 3 T13: -0.0163 T23: -0.2457 REMARK 3 L TENSOR REMARK 3 L11: 6.5442 L22: 6.7713 REMARK 3 L33: 2.0951 L12: 1.2591 REMARK 3 L13: 3.6424 L23: 1.0433 REMARK 3 S TENSOR REMARK 3 S11: -0.1391 S12: 1.5113 S13: -1.1539 REMARK 3 S21: -1.3805 S22: 0.3588 S23: 0.0595 REMARK 3 S31: -0.2679 S32: 0.6261 S33: -0.1811 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 265 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3832 -19.0504 6.8211 REMARK 3 T TENSOR REMARK 3 T11: 0.5317 T22: 0.8098 REMARK 3 T33: 0.4699 T12: -0.0194 REMARK 3 T13: 0.0292 T23: -0.2283 REMARK 3 L TENSOR REMARK 3 L11: 9.8735 L22: 4.4087 REMARK 3 L33: 5.1237 L12: 3.4827 REMARK 3 L13: 6.7182 L23: 2.6565 REMARK 3 S TENSOR REMARK 3 S11: 0.5485 S12: 0.7497 S13: -0.5447 REMARK 3 S21: -0.2818 S22: -0.1686 S23: 0.0463 REMARK 3 S31: 0.3646 S32: -0.0045 S33: -0.4715 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3114 -10.8970 12.9411 REMARK 3 T TENSOR REMARK 3 T11: 0.3497 T22: 0.4529 REMARK 3 T33: 0.3877 T12: -0.0732 REMARK 3 T13: 0.0687 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 5.8774 L22: 4.9156 REMARK 3 L33: 1.9752 L12: 0.7192 REMARK 3 L13: 1.3630 L23: 1.0669 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: 0.9496 S13: 0.0494 REMARK 3 S21: -0.6377 S22: 0.1613 S23: -0.2123 REMARK 3 S31: -0.4567 S32: 0.6740 S33: -0.1153 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 322 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4402 -2.7934 42.2103 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.3333 REMARK 3 T33: 0.3416 T12: 0.0632 REMARK 3 T13: -0.0172 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.4162 L22: 3.1342 REMARK 3 L33: 8.5052 L12: -0.5007 REMARK 3 L13: -4.4238 L23: 0.1668 REMARK 3 S TENSOR REMARK 3 S11: -0.1182 S12: -0.4209 S13: 0.2485 REMARK 3 S21: 0.3453 S22: 0.2431 S23: 0.2274 REMARK 3 S31: 0.0470 S32: -0.0158 S33: -0.1032 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 358 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8858 -8.0449 39.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.2125 T22: 0.3324 REMARK 3 T33: 0.3142 T12: 0.0251 REMARK 3 T13: -0.0019 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 7.7839 L22: 5.7583 REMARK 3 L33: 4.2736 L12: 1.0435 REMARK 3 L13: -1.9503 L23: -1.0957 REMARK 3 S TENSOR REMARK 3 S11: -0.1517 S12: -0.4511 S13: -0.4482 REMARK 3 S21: 0.2419 S22: 0.1614 S23: 0.3893 REMARK 3 S31: 0.3040 S32: -0.1690 S33: 0.0238 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 404 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3933 -14.0419 47.1463 REMARK 3 T TENSOR REMARK 3 T11: 0.5206 T22: 0.6712 REMARK 3 T33: 0.6913 T12: 0.0705 REMARK 3 T13: 0.0885 T23: 0.2461 REMARK 3 L TENSOR REMARK 3 L11: 5.9147 L22: 6.7530 REMARK 3 L33: 5.3580 L12: 5.9493 REMARK 3 L13: -5.4776 L23: -5.0543 REMARK 3 S TENSOR REMARK 3 S11: -0.4235 S12: -1.0315 S13: -1.0567 REMARK 3 S21: 0.3173 S22: 0.3915 S23: 0.4964 REMARK 3 S31: 0.8406 S32: 0.0695 S33: 0.1918 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 414 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2099 -10.2919 43.9926 REMARK 3 T TENSOR REMARK 3 T11: 0.3783 T22: 0.5160 REMARK 3 T33: 0.3621 T12: 0.1043 REMARK 3 T13: -0.0881 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 9.2168 L22: 4.5120 REMARK 3 L33: 7.6348 L12: 1.0727 REMARK 3 L13: -6.0319 L23: -0.8194 REMARK 3 S TENSOR REMARK 3 S11: -0.1367 S12: -0.9164 S13: -0.5137 REMARK 3 S21: 0.6572 S22: 0.2317 S23: -0.2714 REMARK 3 S31: 0.1545 S32: 0.0626 S33: -0.0739 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300047380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : BL2 REMARK 200 X-RAY GENERATOR MODEL : SACLA BEAMLINE BL2 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.77 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MPCCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 132583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 32.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 135.3 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 25% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.23500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.99500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.99500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 222 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 231 O4 GAL C 6 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 257 54.36 71.62 REMARK 500 ASN A 419 15.11 57.43 REMARK 500 ASN B 419 16.22 58.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 551 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 574 DISTANCE = 6.76 ANGSTROMS DBREF 8ZCK A 222 429 UNP P0DOX5 IGG1_HUMAN 239 446 DBREF 8ZCK B 222 429 UNP P0DOX5 IGG1_HUMAN 239 446 SEQRES 1 A 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 A 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 A 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 A 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 A 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 A 208 VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU SEQRES 7 A 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 A 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 A 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 A 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 A 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 A 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 A 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 A 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 A 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 A 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER SEQRES 1 B 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 B 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 B 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 B 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 B 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 B 208 VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU SEQRES 7 B 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 B 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 B 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 B 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 B 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 B 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 B 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 B 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 B 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 B 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET MAN C 7 11 HET NAG C 8 14 HET FUL C 9 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET FUC D 7 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUL C6 H12 O5 FORMUL 4 FUC C6 H12 O5 FORMUL 5 HOH *127(H2 O) HELIX 1 AA1 LYS A 231 MET A 237 1 7 HELIX 2 AA2 LEU A 294 GLY A 301 1 8 HELIX 3 AA3 SER A 339 LYS A 345 5 7 HELIX 4 AA4 LYS A 399 GLY A 405 1 7 HELIX 5 AA5 LEU A 417 ASN A 419 5 3 HELIX 6 AA6 LYS B 231 MET B 237 1 7 HELIX 7 AA7 LEU B 294 ASN B 300 1 7 HELIX 8 AA8 SER B 339 LYS B 345 5 7 HELIX 9 AA9 LYS B 399 GLN B 404 1 6 HELIX 10 AB1 LEU B 417 TYR B 421 5 5 SHEET 1 AA1 4 SER A 224 PHE A 228 0 SHEET 2 AA1 4 GLU A 243 VAL A 251 -1 O VAL A 247 N PHE A 226 SHEET 3 AA1 4 TYR A 285 THR A 292 -1 O SER A 289 N CYS A 246 SHEET 4 AA1 4 LYS A 273 GLU A 279 -1 N LYS A 273 O VAL A 290 SHEET 1 AA2 4 VAL A 267 VAL A 269 0 SHEET 2 AA2 4 LYS A 259 VAL A 264 -1 N VAL A 264 O VAL A 267 SHEET 3 AA2 4 TYR A 304 SER A 309 -1 O LYS A 307 N ASN A 261 SHEET 4 AA2 4 ILE A 317 ILE A 321 -1 O LYS A 319 N CYS A 306 SHEET 1 AA3 4 GLN A 332 LEU A 336 0 SHEET 2 AA3 4 GLN A 347 PHE A 357 -1 O LEU A 353 N TYR A 334 SHEET 3 AA3 4 PHE A 389 ASP A 398 -1 O LEU A 395 N LEU A 350 SHEET 4 AA3 4 TYR A 376 THR A 378 -1 N LYS A 377 O LYS A 394 SHEET 1 AA4 4 GLN A 332 LEU A 336 0 SHEET 2 AA4 4 GLN A 347 PHE A 357 -1 O LEU A 353 N TYR A 334 SHEET 3 AA4 4 PHE A 389 ASP A 398 -1 O LEU A 395 N LEU A 350 SHEET 4 AA4 4 VAL A 382 LEU A 383 -1 N VAL A 382 O PHE A 390 SHEET 1 AA5 4 GLN A 371 PRO A 372 0 SHEET 2 AA5 4 ALA A 363 SER A 368 -1 N SER A 368 O GLN A 371 SHEET 3 AA5 4 PHE A 408 MET A 413 -1 O SER A 411 N GLU A 365 SHEET 4 AA5 4 TYR A 421 LEU A 426 -1 O LYS A 424 N CYS A 410 SHEET 1 AA6 4 SER B 224 PHE B 228 0 SHEET 2 AA6 4 GLU B 243 SER B 252 -1 O VAL B 247 N PHE B 226 SHEET 3 AA6 4 THR B 284 THR B 292 -1 O LEU B 291 N VAL B 244 SHEET 4 AA6 4 LYS B 273 THR B 274 -1 N LYS B 273 O VAL B 290 SHEET 1 AA7 4 SER B 224 PHE B 228 0 SHEET 2 AA7 4 GLU B 243 SER B 252 -1 O VAL B 247 N PHE B 226 SHEET 3 AA7 4 THR B 284 THR B 292 -1 O LEU B 291 N VAL B 244 SHEET 4 AA7 4 GLU B 278 GLU B 279 -1 N GLU B 278 O ARG B 286 SHEET 1 AA8 4 VAL B 267 VAL B 269 0 SHEET 2 AA8 4 LYS B 259 VAL B 264 -1 N VAL B 264 O VAL B 267 SHEET 3 AA8 4 TYR B 304 SER B 309 -1 O LYS B 305 N TYR B 263 SHEET 4 AA8 4 ILE B 317 ILE B 321 -1 O ILE B 321 N TYR B 304 SHEET 1 AA9 4 GLN B 332 LEU B 336 0 SHEET 2 AA9 4 GLN B 347 PHE B 357 -1 O LEU B 353 N TYR B 334 SHEET 3 AA9 4 PHE B 389 ASP B 398 -1 O LEU B 395 N LEU B 350 SHEET 4 AA9 4 TYR B 376 THR B 378 -1 N LYS B 377 O LYS B 394 SHEET 1 AB1 4 GLN B 332 LEU B 336 0 SHEET 2 AB1 4 GLN B 347 PHE B 357 -1 O LEU B 353 N TYR B 334 SHEET 3 AB1 4 PHE B 389 ASP B 398 -1 O LEU B 395 N LEU B 350 SHEET 4 AB1 4 VAL B 382 LEU B 383 -1 N VAL B 382 O PHE B 390 SHEET 1 AB2 4 GLN B 371 PRO B 372 0 SHEET 2 AB2 4 ALA B 363 SER B 368 -1 N SER B 368 O GLN B 371 SHEET 3 AB2 4 PHE B 408 MET B 413 -1 O SER B 411 N GLU B 365 SHEET 4 AB2 4 THR B 422 LEU B 426 -1 O LEU B 426 N PHE B 408 SSBOND 1 CYS A 246 CYS A 306 1555 1555 2.03 SSBOND 2 CYS A 352 CYS A 410 1555 1555 2.04 SSBOND 3 CYS B 246 CYS B 306 1555 1555 2.03 SSBOND 4 CYS B 352 CYS B 410 1555 1555 2.04 LINK ND2 ASN A 282 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 282 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUL C 9 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.44 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.45 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.44 LINK O3 MAN C 7 C1 NAG C 8 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O6 NAG D 1 C1 FUC D 7 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 6 1555 1555 1.44 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.43 CISPEP 1 TYR A 358 PRO A 359 0 -6.75 CISPEP 2 TYR B 358 PRO B 359 0 -4.48 CRYST1 50.470 79.990 143.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006984 0.00000