HEADER IMMUNE SYSTEM 30-APR-24 8ZCL TITLE AMBIENT TEMPERATURE CRYSTAL STRUCTURE OF FC FRAGMENT OF HUMAN IGG1 TITLE 2 FROM BIOSIMILAR VEGF-TRAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FC FRAGMENT; COMPND 5 SYNONYM: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN NIE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS FUSION PROTEIN, IMMUNOGLOBIN, N-GLYCANS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.DESTAN,H.DEMIRCI REVDAT 1 08-MAY-24 8ZCL 0 JRNL AUTH E.DESTAN,H.DEMIRCI JRNL TITL AMBIENT TEMPERATURE CRYSTAL STRUCTURE OF FC FRAGMENT OF JRNL TITL 2 HUMAN IGG1 FROM BIOSIMILAR VEGF-TRAP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 17036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9900 - 5.4100 0.99 2026 153 0.1538 0.2047 REMARK 3 2 5.4000 - 4.2900 1.00 1920 144 0.1328 0.2049 REMARK 3 3 4.2900 - 3.7500 0.98 1910 142 0.1580 0.2010 REMARK 3 4 3.7500 - 3.4100 0.97 1837 138 0.1685 0.2275 REMARK 3 5 3.4100 - 3.1600 0.95 1785 135 0.1891 0.2448 REMARK 3 6 3.1600 - 2.9800 0.92 1727 129 0.2327 0.3148 REMARK 3 7 2.9800 - 2.8300 0.86 1625 123 0.2495 0.2807 REMARK 3 8 2.8300 - 2.7000 0.83 1568 117 0.2761 0.3264 REMARK 3 9 2.7000 - 2.6000 0.77 1447 110 0.3495 0.4007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3621 REMARK 3 ANGLE : 0.543 4940 REMARK 3 CHIRALITY : 0.043 597 REMARK 3 PLANARITY : 0.004 608 REMARK 3 DIHEDRAL : 11.951 1410 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.3016 12.6558 8.7042 REMARK 3 T TENSOR REMARK 3 T11: 1.8109 T22: 0.6514 REMARK 3 T33: 0.6258 T12: -0.2714 REMARK 3 T13: 0.2397 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 2.8877 L22: 1.7050 REMARK 3 L33: 6.1732 L12: -0.0080 REMARK 3 L13: -0.5026 L23: -0.0142 REMARK 3 S TENSOR REMARK 3 S11: -0.5602 S12: 0.9925 S13: 0.5624 REMARK 3 S21: -2.7491 S22: 0.3084 S23: -0.2955 REMARK 3 S31: -0.2981 S32: 0.0536 S33: -0.0064 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1831 6.9438 40.2241 REMARK 3 T TENSOR REMARK 3 T11: 0.2046 T22: 0.3799 REMARK 3 T33: 0.3432 T12: 0.0052 REMARK 3 T13: 0.0436 T23: -0.0748 REMARK 3 L TENSOR REMARK 3 L11: 5.7419 L22: 3.4178 REMARK 3 L33: 3.2263 L12: 0.3302 REMARK 3 L13: 1.9222 L23: 0.1908 REMARK 3 S TENSOR REMARK 3 S11: -0.1909 S12: -0.6038 S13: 0.4874 REMARK 3 S21: 0.3981 S22: 0.0233 S23: 0.0463 REMARK 3 S31: -0.0639 S32: -0.0061 S33: 0.1514 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 222 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7814 -14.5733 20.2548 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.3669 REMARK 3 T33: 0.3239 T12: -0.0561 REMARK 3 T13: 0.0472 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 5.1820 L22: 4.8323 REMARK 3 L33: 7.6759 L12: 0.7893 REMARK 3 L13: 1.1975 L23: -2.1250 REMARK 3 S TENSOR REMARK 3 S11: -0.1017 S12: 0.2230 S13: -0.4204 REMARK 3 S21: -0.5506 S22: -0.0774 S23: -0.0542 REMARK 3 S31: 0.8266 S32: -0.8174 S33: 0.1006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6383 -15.4675 1.6284 REMARK 3 T TENSOR REMARK 3 T11: 0.5665 T22: 0.9137 REMARK 3 T33: 0.5084 T12: -0.0132 REMARK 3 T13: 0.0225 T23: -0.2532 REMARK 3 L TENSOR REMARK 3 L11: 5.1176 L22: 7.7240 REMARK 3 L33: 1.2820 L12: 0.2190 REMARK 3 L13: -1.8736 L23: -2.1902 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 1.4429 S13: -0.9380 REMARK 3 S21: -1.7172 S22: 0.1935 S23: 0.2424 REMARK 3 S31: -0.3268 S32: 0.1798 S33: -0.2740 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 265 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3414 -19.0677 6.8065 REMARK 3 T TENSOR REMARK 3 T11: 0.5016 T22: 0.6898 REMARK 3 T33: 0.5888 T12: -0.0537 REMARK 3 T13: -0.0285 T23: -0.2551 REMARK 3 L TENSOR REMARK 3 L11: 7.9330 L22: 2.6887 REMARK 3 L33: 9.0410 L12: 0.4701 REMARK 3 L13: 6.7053 L23: 0.3811 REMARK 3 S TENSOR REMARK 3 S11: 1.0035 S12: 0.2019 S13: -0.8343 REMARK 3 S21: -0.3348 S22: -0.1759 S23: 0.0867 REMARK 3 S31: 0.5293 S32: -0.2057 S33: -0.8907 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2938 -10.9238 12.9235 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.4593 REMARK 3 T33: 0.3602 T12: -0.0364 REMARK 3 T13: 0.0510 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 4.6964 L22: 6.3660 REMARK 3 L33: 9.0476 L12: 0.3830 REMARK 3 L13: -0.0228 L23: 0.5656 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: 0.8429 S13: 0.0991 REMARK 3 S21: -0.5330 S22: -0.0098 S23: -0.0485 REMARK 3 S31: -0.4351 S32: 0.4337 S33: -0.0544 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 322 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6417 -2.9743 42.0972 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.3760 REMARK 3 T33: 0.3172 T12: 0.0507 REMARK 3 T13: -0.0415 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 7.6561 L22: 4.2392 REMARK 3 L33: 5.2793 L12: 0.5242 REMARK 3 L13: -3.2598 L23: -0.3850 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -1.0055 S13: 0.1266 REMARK 3 S21: 0.2793 S22: -0.0905 S23: 0.1560 REMARK 3 S31: -0.0835 S32: 0.0070 S33: -0.0420 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 358 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9193 -8.1219 39.2405 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.4222 REMARK 3 T33: 0.3428 T12: 0.0327 REMARK 3 T13: -0.0162 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 5.7943 L22: 6.2351 REMARK 3 L33: 3.7841 L12: 0.8217 REMARK 3 L13: -1.1899 L23: -0.2403 REMARK 3 S TENSOR REMARK 3 S11: -0.1361 S12: -0.4943 S13: -0.5792 REMARK 3 S21: 0.2201 S22: 0.1024 S23: -0.0318 REMARK 3 S31: 0.2738 S32: -0.1917 S33: 0.0869 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 404 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3845 -14.1368 47.0618 REMARK 3 T TENSOR REMARK 3 T11: 0.4569 T22: 0.4958 REMARK 3 T33: 0.6164 T12: -0.0126 REMARK 3 T13: 0.0444 T23: 0.1423 REMARK 3 L TENSOR REMARK 3 L11: 6.3027 L22: 3.7341 REMARK 3 L33: 6.4483 L12: 4.8553 REMARK 3 L13: -6.3518 L23: -4.9230 REMARK 3 S TENSOR REMARK 3 S11: -0.4251 S12: -1.0363 S13: -1.1610 REMARK 3 S21: -0.2104 S22: 0.1391 S23: 0.4100 REMARK 3 S31: 0.5447 S32: 0.5199 S33: 0.2199 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 414 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2113 -10.3927 43.9040 REMARK 3 T TENSOR REMARK 3 T11: 0.3551 T22: 0.5549 REMARK 3 T33: 0.4243 T12: 0.1623 REMARK 3 T13: -0.0812 T23: 0.1084 REMARK 3 L TENSOR REMARK 3 L11: 5.9371 L22: 2.5705 REMARK 3 L33: 1.7643 L12: -1.3888 REMARK 3 L13: -3.1713 L23: 1.1245 REMARK 3 S TENSOR REMARK 3 S11: -0.1936 S12: -0.8821 S13: -0.9811 REMARK 3 S21: 0.5967 S22: -0.0711 S23: -0.3986 REMARK 3 S31: -0.0015 S32: 0.3364 S33: 0.1625 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300047382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU PHOTONJET-R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-3000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38860 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 143.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 38.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 25% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.23500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.99500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.99500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 222 REMARK 465 SER A 429 REMARK 465 SER B 429 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL B 244 CA CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 231 O4 GAL C 6 1.30 REMARK 500 O HOH A 525 O HOH A 530 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 368 119.83 -160.21 REMARK 500 ASN A 419 15.75 58.63 REMARK 500 ASN B 419 14.09 58.82 REMARK 500 HIS B 420 18.97 59.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 543 DISTANCE = 7.00 ANGSTROMS DBREF 8ZCL A 222 429 UNP P0DOX5 IGG1_HUMAN 239 446 DBREF 8ZCL B 222 429 UNP P0DOX5 IGG1_HUMAN 239 446 SEQRES 1 A 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 A 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 A 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 A 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 A 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 A 208 VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU SEQRES 7 A 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 A 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 A 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 A 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 A 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 A 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 A 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 A 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 A 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 A 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER SEQRES 1 B 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 B 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 B 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 B 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 B 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 B 208 VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU SEQRES 7 B 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 B 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 B 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 B 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 B 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 B 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 B 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 B 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 B 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 B 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET MAN C 7 11 HET NAG C 8 14 HET FUL C 9 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET FUC D 7 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUL C6 H12 O5 FORMUL 4 FUC C6 H12 O5 FORMUL 5 HOH *90(H2 O) HELIX 1 AA1 LYS A 231 MET A 237 1 7 HELIX 2 AA2 LEU A 294 ASN A 300 1 7 HELIX 3 AA3 SER A 339 LYS A 345 5 7 HELIX 4 AA4 LYS A 399 GLN A 404 1 6 HELIX 5 AA5 LEU A 417 TYR A 421 5 5 HELIX 6 AA6 LYS B 231 MET B 237 1 7 HELIX 7 AA7 LEU B 294 ASN B 300 1 7 HELIX 8 AA8 ARG B 340 LYS B 345 5 6 HELIX 9 AA9 LYS B 399 GLN B 404 1 6 HELIX 10 AB1 LEU B 417 TYR B 421 5 5 SHEET 1 AA1 4 SER A 224 PHE A 228 0 SHEET 2 AA1 4 GLU A 243 VAL A 251 -1 O THR A 245 N PHE A 228 SHEET 3 AA1 4 TYR A 285 THR A 292 -1 O VAL A 287 N VAL A 248 SHEET 4 AA1 4 LYS A 273 GLU A 279 -1 N LYS A 273 O VAL A 290 SHEET 1 AA2 4 VAL A 267 VAL A 269 0 SHEET 2 AA2 4 VAL A 258 VAL A 264 -1 N VAL A 264 O VAL A 267 SHEET 3 AA2 4 TYR A 304 ASN A 310 -1 O LYS A 307 N ASN A 261 SHEET 4 AA2 4 ILE A 317 ILE A 321 -1 O ILE A 321 N TYR A 304 SHEET 1 AA3 4 GLN A 332 LEU A 336 0 SHEET 2 AA3 4 GLN A 347 PHE A 357 -1 O LEU A 353 N TYR A 334 SHEET 3 AA3 4 PHE A 389 ASP A 398 -1 O LEU A 395 N LEU A 350 SHEET 4 AA3 4 TYR A 376 THR A 378 -1 N LYS A 377 O LYS A 394 SHEET 1 AA4 4 GLN A 332 LEU A 336 0 SHEET 2 AA4 4 GLN A 347 PHE A 357 -1 O LEU A 353 N TYR A 334 SHEET 3 AA4 4 PHE A 389 ASP A 398 -1 O LEU A 395 N LEU A 350 SHEET 4 AA4 4 VAL A 382 LEU A 383 -1 N VAL A 382 O PHE A 390 SHEET 1 AA5 4 GLN A 371 PRO A 372 0 SHEET 2 AA5 4 ALA A 363 SER A 368 -1 N SER A 368 O GLN A 371 SHEET 3 AA5 4 PHE A 408 MET A 413 -1 O SER A 411 N GLU A 365 SHEET 4 AA5 4 THR A 422 LEU A 426 -1 O LEU A 426 N PHE A 408 SHEET 1 AA6 4 SER B 224 PHE B 228 0 SHEET 2 AA6 4 GLU B 243 VAL B 251 -1 O VAL B 247 N PHE B 226 SHEET 3 AA6 4 TYR B 285 THR B 292 -1 O SER B 289 N CYS B 246 SHEET 4 AA6 4 LYS B 273 GLU B 279 -1 N LYS B 275 O VAL B 288 SHEET 1 AA7 4 VAL B 267 VAL B 269 0 SHEET 2 AA7 4 LYS B 259 VAL B 264 -1 N VAL B 264 O VAL B 267 SHEET 3 AA7 4 TYR B 304 SER B 309 -1 O LYS B 307 N ASN B 261 SHEET 4 AA7 4 ILE B 317 ILE B 321 -1 O ILE B 321 N TYR B 304 SHEET 1 AA8 4 GLN B 332 LEU B 336 0 SHEET 2 AA8 4 GLN B 347 PHE B 357 -1 O LEU B 353 N TYR B 334 SHEET 3 AA8 4 PHE B 389 ASP B 398 -1 O LEU B 395 N LEU B 350 SHEET 4 AA8 4 TYR B 376 THR B 378 -1 N LYS B 377 O LYS B 394 SHEET 1 AA9 4 GLN B 332 LEU B 336 0 SHEET 2 AA9 4 GLN B 347 PHE B 357 -1 O LEU B 353 N TYR B 334 SHEET 3 AA9 4 PHE B 389 ASP B 398 -1 O LEU B 395 N LEU B 350 SHEET 4 AA9 4 VAL B 382 LEU B 383 -1 N VAL B 382 O PHE B 390 SHEET 1 AB1 4 GLN B 371 PRO B 372 0 SHEET 2 AB1 4 ALA B 363 SER B 368 -1 N SER B 368 O GLN B 371 SHEET 3 AB1 4 PHE B 408 MET B 413 -1 O MET B 413 N ALA B 363 SHEET 4 AB1 4 THR B 422 LEU B 426 -1 O LYS B 424 N CYS B 410 SSBOND 1 CYS A 246 CYS A 306 1555 1555 2.04 SSBOND 2 CYS A 352 CYS A 410 1555 1555 2.03 SSBOND 3 CYS B 246 CYS B 306 1555 1555 2.03 SSBOND 4 CYS B 352 CYS B 410 1555 1555 2.04 LINK ND2 ASN A 282 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 282 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUL C 9 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.44 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.45 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.44 LINK O3 MAN C 7 C1 NAG C 8 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 7 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 6 1555 1555 1.44 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 CISPEP 1 TYR A 358 PRO A 359 0 -5.08 CISPEP 2 TYR B 358 PRO B 359 0 -3.96 CRYST1 50.470 79.990 143.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006984 0.00000