HEADER PROTEIN BINDING 04-MAY-24 8ZE8 TITLE ARF-GTPASE ACTIVATING PROTEIN ASAP1 SH3 DOMAIN IN COMPLEX WITH 440 KD TITLE 2 ANKYRIN-B FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARF-GAP WITH SH3 DOMAIN, ANK REPEAT AND PH DOMAIN- COMPND 3 CONTAINING PROTEIN 1; COMPND 4 CHAIN: A, B, D, G; COMPND 5 SYNONYM: 130 KDA PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE-DEPENDENT ARF1 COMPND 6 GTPASE-ACTIVATING PROTEIN,ADP-RIBOSYLATION FACTOR-DIRECTED GTPASE- COMPND 7 ACTIVATING PROTEIN 1,ARF GTPASE-ACTIVATING PROTEIN 1,DEVELOPMENT AND COMPND 8 DIFFERENTIATION-ENHANCING FACTOR 1,DEF-1,DIFFERENTIATION-ENHANCING COMPND 9 FACTOR 1,PIP2-DEPENDENT ARF1 GAP; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: ANKYRIN-2; COMPND 13 CHAIN: E, C, F, H; COMPND 14 SYNONYM: ANK-2,ANKYRIN-B,BRAIN ANKYRIN,NON-ERYTHROID ANKYRIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ASAP1, DDEF1, KIAA1249, SHAG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.CHEN,Y.LI,Y.ZHAO,Y.HE,M.ZHANG REVDAT 2 24-SEP-25 8ZE8 1 JRNL REVDAT 1 12-MAR-25 8ZE8 0 JRNL AUTH Y.LI,Y.ZHAO,Y.HE,F.LIU,L.XIA,K.LIU,M.ZHANG,K.CHEN JRNL TITL NEW TARGETS AND DESIGNED INHIBITORS OF ASAP ARF-GAPS DERIVED JRNL TITL 2 FROM STRUCTURAL CHARACTERIZATION OF THE ASAP1/440-KD JRNL TITL 3 ANKYRIN-B INTERACTION. JRNL REF J.BIOL.CHEM. V. 300 07762 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39265663 JRNL DOI 10.1016/J.JBC.2024.107762 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 23128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4000 - 4.1400 0.99 2787 146 0.1890 0.2113 REMARK 3 2 4.1400 - 3.2900 0.99 2787 147 0.1625 0.1725 REMARK 3 3 3.2900 - 2.8700 0.98 2773 123 0.1830 0.2585 REMARK 3 4 2.8700 - 2.6100 0.98 2740 148 0.1865 0.2459 REMARK 3 5 2.6100 - 2.4200 0.97 2776 146 0.1946 0.2290 REMARK 3 6 2.4200 - 2.2800 0.97 2697 130 0.1837 0.2459 REMARK 3 7 2.2800 - 2.1600 0.96 2721 164 0.1968 0.2441 REMARK 3 8 2.1600 - 2.0700 0.96 2716 127 0.1988 0.2710 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2280 REMARK 3 ANGLE : 1.284 3079 REMARK 3 CHIRALITY : 0.066 337 REMARK 3 PLANARITY : 0.013 398 REMARK 3 DIHEDRAL : 6.450 291 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1300047579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 32.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.21300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3JV3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES MONOHYDRATE, PH=6.0, 20 % REMARK 280 W/V POLYETHYLENE GLYCOL 6,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1079 REMARK 465 PRO A 1080 REMARK 465 GLY A 1081 REMARK 465 SER A 1082 REMARK 465 GLY A 1083 REMARK 465 LYS A 1084 REMARK 465 ASN A 1085 REMARK 465 GLY E 1699 REMARK 465 LYS E 1707 REMARK 465 LEU E 1708 REMARK 465 LYS E 1709 REMARK 465 GLU E 1710 REMARK 465 GLY B 1079 REMARK 465 PRO B 1080 REMARK 465 GLY B 1081 REMARK 465 SER B 1082 REMARK 465 GLY B 1083 REMARK 465 LYS B 1084 REMARK 465 ASN B 1085 REMARK 465 GLY C 1699 REMARK 465 LYS C 1707 REMARK 465 LEU C 1708 REMARK 465 LYS C 1709 REMARK 465 GLU C 1710 REMARK 465 GLY D 1079 REMARK 465 PRO D 1080 REMARK 465 GLY D 1081 REMARK 465 SER D 1082 REMARK 465 GLY D 1083 REMARK 465 LYS D 1084 REMARK 465 ASN D 1085 REMARK 465 ASP D 1147 REMARK 465 GLY F 1699 REMARK 465 LYS F 1707 REMARK 465 LEU F 1708 REMARK 465 LYS F 1709 REMARK 465 GLU F 1710 REMARK 465 GLY G 1079 REMARK 465 PRO G 1080 REMARK 465 GLY G 1081 REMARK 465 SER G 1082 REMARK 465 GLY G 1083 REMARK 465 LYS G 1084 REMARK 465 ASN G 1085 REMARK 465 ASP G 1147 REMARK 465 GLY H 1699 REMARK 465 LYS H 1707 REMARK 465 LEU H 1708 REMARK 465 LYS H 1709 REMARK 465 GLU H 1710 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E1701 CG CD CE NZ REMARK 470 ILE C1700 CG1 CG2 CD1 REMARK 470 LYS C1701 CG CD CE NZ REMARK 470 LYS F1701 CG CD CE NZ REMARK 470 LYS G1086 CG CD CE NZ REMARK 470 GLN G1120 CG CD OE1 NE2 REMARK 470 ARG H1706 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG B 1089 OE2 GLU B 1128 1.34 REMARK 500 O HOH B 1319 O HOH B 1355 1.81 REMARK 500 O HOH A 1252 O HOH A 1268 1.88 REMARK 500 O HOH G 1265 O HOH G 1267 1.89 REMARK 500 O HOH G 1246 O HOH G 1263 1.91 REMARK 500 O HOH A 1245 O HOH A 1260 1.94 REMARK 500 O HOH D 1216 O HOH D 1262 1.95 REMARK 500 O HOH D 1257 O HOH D 1265 1.96 REMARK 500 O HOH B 1334 O HOH B 1350 1.96 REMARK 500 O HOH G 1205 O HOH G 1219 1.97 REMARK 500 O HOH A 1206 O HOH A 1238 1.98 REMARK 500 O HOH B 1354 O HOH B 1368 2.04 REMARK 500 O HOH G 1247 O HOH G 1248 2.13 REMARK 500 O HOH G 1230 O HOH G 1257 2.13 REMARK 500 NH1 ARG B 1089 OE2 GLU B 1128 2.15 REMARK 500 O2 GOL B 1201 O HOH B 1301 2.17 REMARK 500 O HOH G 1266 O HOH G 1267 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1243 O HOH D 1249 1655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B1120 CA - CB - CG ANGL. DEV. = -16.7 DEGREES REMARK 500 LEU B1145 CB - CG - CD1 ANGL. DEV. = -12.0 DEGREES REMARK 500 LYS D1086 CB - CG - CD ANGL. DEV. = -18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B1146 61.92 32.43 REMARK 500 ASP D1119 -166.97 -160.32 REMARK 500 LEU D1145 -53.94 -120.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1375 DISTANCE = 6.58 ANGSTROMS DBREF 8ZE8 A 1083 1147 UNP Q9QWY8 ASAP1_MOUSE 1083 1147 DBREF 8ZE8 E 1699 1710 UNP Q01484 ANK2_HUMAN 1699 1710 DBREF 8ZE8 B 1083 1147 UNP Q9QWY8 ASAP1_MOUSE 1083 1147 DBREF 8ZE8 C 1699 1710 UNP Q01484 ANK2_HUMAN 1699 1710 DBREF 8ZE8 D 1083 1147 UNP Q9QWY8 ASAP1_MOUSE 1083 1147 DBREF 8ZE8 F 1699 1710 UNP Q01484 ANK2_HUMAN 1699 1710 DBREF 8ZE8 G 1083 1147 UNP Q9QWY8 ASAP1_MOUSE 1083 1147 DBREF 8ZE8 H 1699 1710 UNP Q01484 ANK2_HUMAN 1699 1710 SEQADV 8ZE8 GLY A 1079 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 PRO A 1080 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 GLY A 1081 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 SER A 1082 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 GLY B 1079 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 PRO B 1080 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 GLY B 1081 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 SER B 1082 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 GLY D 1079 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 PRO D 1080 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 GLY D 1081 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 SER D 1082 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 GLY G 1079 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 PRO G 1080 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 GLY G 1081 UNP Q9QWY8 EXPRESSION TAG SEQADV 8ZE8 SER G 1082 UNP Q9QWY8 EXPRESSION TAG SEQRES 1 A 69 GLY PRO GLY SER GLY LYS ASN LYS VAL ARG ARG VAL LYS SEQRES 2 A 69 THR ILE TYR ASP CYS GLN ALA ASP ASN ASP ASP GLU LEU SEQRES 3 A 69 THR PHE ILE GLU GLY GLU VAL ILE ILE VAL THR GLY GLU SEQRES 4 A 69 GLU ASP GLN GLU TRP TRP ILE GLY HIS ILE GLU GLY GLN SEQRES 5 A 69 PRO GLU ARG LYS GLY VAL PHE PRO VAL SER PHE VAL HIS SEQRES 6 A 69 ILE LEU SER ASP SEQRES 1 E 12 GLY ILE LYS LYS PRO VAL ARG ARG LYS LEU LYS GLU SEQRES 1 B 69 GLY PRO GLY SER GLY LYS ASN LYS VAL ARG ARG VAL LYS SEQRES 2 B 69 THR ILE TYR ASP CYS GLN ALA ASP ASN ASP ASP GLU LEU SEQRES 3 B 69 THR PHE ILE GLU GLY GLU VAL ILE ILE VAL THR GLY GLU SEQRES 4 B 69 GLU ASP GLN GLU TRP TRP ILE GLY HIS ILE GLU GLY GLN SEQRES 5 B 69 PRO GLU ARG LYS GLY VAL PHE PRO VAL SER PHE VAL HIS SEQRES 6 B 69 ILE LEU SER ASP SEQRES 1 C 12 GLY ILE LYS LYS PRO VAL ARG ARG LYS LEU LYS GLU SEQRES 1 D 69 GLY PRO GLY SER GLY LYS ASN LYS VAL ARG ARG VAL LYS SEQRES 2 D 69 THR ILE TYR ASP CYS GLN ALA ASP ASN ASP ASP GLU LEU SEQRES 3 D 69 THR PHE ILE GLU GLY GLU VAL ILE ILE VAL THR GLY GLU SEQRES 4 D 69 GLU ASP GLN GLU TRP TRP ILE GLY HIS ILE GLU GLY GLN SEQRES 5 D 69 PRO GLU ARG LYS GLY VAL PHE PRO VAL SER PHE VAL HIS SEQRES 6 D 69 ILE LEU SER ASP SEQRES 1 F 12 GLY ILE LYS LYS PRO VAL ARG ARG LYS LEU LYS GLU SEQRES 1 G 69 GLY PRO GLY SER GLY LYS ASN LYS VAL ARG ARG VAL LYS SEQRES 2 G 69 THR ILE TYR ASP CYS GLN ALA ASP ASN ASP ASP GLU LEU SEQRES 3 G 69 THR PHE ILE GLU GLY GLU VAL ILE ILE VAL THR GLY GLU SEQRES 4 G 69 GLU ASP GLN GLU TRP TRP ILE GLY HIS ILE GLU GLY GLN SEQRES 5 G 69 PRO GLU ARG LYS GLY VAL PHE PRO VAL SER PHE VAL HIS SEQRES 6 G 69 ILE LEU SER ASP SEQRES 1 H 12 GLY ILE LYS LYS PRO VAL ARG ARG LYS LEU LYS GLU HET GOL B1201 11 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *310(H2 O) SHEET 1 AA1 5 GLN A1130 PRO A1138 0 SHEET 2 AA1 5 TRP A1122 ILE A1127 -1 N TRP A1123 O PHE A1137 SHEET 3 AA1 5 VAL A1111 ASP A1119 -1 N ILE A1113 O HIS A1126 SHEET 4 AA1 5 ARG A1089 THR A1092 -1 N VAL A1090 O ILE A1112 SHEET 5 AA1 5 VAL A1142 SER A1146 -1 O HIS A1143 N LYS A1091 SHEET 1 AA2 5 GLN B1130 PRO B1138 0 SHEET 2 AA2 5 TRP B1122 ILE B1127 -1 N TRP B1123 O PHE B1137 SHEET 3 AA2 5 VAL B1111 ASP B1119 -1 N ILE B1113 O HIS B1126 SHEET 4 AA2 5 ARG B1089 THR B1092 -1 N VAL B1090 O ILE B1112 SHEET 5 AA2 5 VAL B1142 ILE B1144 -1 O HIS B1143 N LYS B1091 SHEET 1 AA3 5 GLN D1130 PRO D1138 0 SHEET 2 AA3 5 TRP D1122 ILE D1127 -1 N TRP D1123 O PHE D1137 SHEET 3 AA3 5 VAL D1111 ASP D1119 -1 N ILE D1113 O HIS D1126 SHEET 4 AA3 5 ARG D1089 THR D1092 -1 N VAL D1090 O ILE D1112 SHEET 5 AA3 5 VAL D1142 ILE D1144 -1 O HIS D1143 N LYS D1091 SHEET 1 AA4 5 GLN G1130 PRO G1138 0 SHEET 2 AA4 5 TRP G1122 ILE G1127 -1 N GLY G1125 O GLY G1135 SHEET 3 AA4 5 VAL G1111 GLU G1117 -1 N ILE G1113 O HIS G1126 SHEET 4 AA4 5 ARG G1089 THR G1092 -1 N VAL G1090 O ILE G1112 SHEET 5 AA4 5 VAL G1142 SER G1146 -1 O HIS G1143 N LYS G1091 CRYST1 39.922 52.074 56.909 111.42 90.16 112.46 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025049 0.010355 0.004546 0.00000 SCALE2 0.000000 0.020780 0.008970 0.00000 SCALE3 0.000000 0.000000 0.019139 0.00000 CONECT 4398 4399 4400 4404 4405 CONECT 4399 4398 CONECT 4400 4398 4401 4402 4406 CONECT 4401 4400 CONECT 4402 4400 4403 4407 4408 CONECT 4403 4402 CONECT 4404 4398 CONECT 4405 4398 CONECT 4406 4400 CONECT 4407 4402 CONECT 4408 4402 MASTER 393 0 1 0 20 0 0 6 2547 8 11 28 END