HEADER LIGASE 09-MAY-24 8ZGA TITLE F-DEGRON FUSED ZZ-DOMAIN OF THE ARABIDOPSIS THALIANA E3 UBIQUITIN- TITLE 2 PROTEIN LIGASE PRT1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-DEGRON,E3 UBIQUITIN-PROTEIN LIGASE PRT1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: ZZ-DOMAIN; COMPND 5 SYNONYM: PROTEOLYSIS 1 PROTEIN,RING-TYPE E3 UBIQUITIN TRANSFERASE COMPND 6 PRT1; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PRT1, AT3G24800, K7P8.9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, ZZ-DOMAIN, ARABIDOPSIS THALIANA, PRT1, E3-UBIQUITIN LIGASE, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR W.S.YANG,H.K.SONG REVDAT 2 03-SEP-25 8ZGA 1 JRNL REVDAT 1 14-MAY-25 8ZGA 0 JRNL AUTH W.S.YANG,S.H.KIM,M.KIM,H.SHIN,J.LEE,A.SANDMANN,O.K.PARK, JRNL AUTH 2 N.DISSMEYER,H.K.SONG JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION AND UBIQUITYLATION OF JRNL TITL 2 TYPE-2 N-DEGRON SUBSTRATE BY PRT1 PLANT N-RECOGNIN. JRNL REF NAT COMMUN V. 16 7817 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40841552 JRNL DOI 10.1038/S41467-025-63282-9 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC7_3834 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 22752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.750 REMARK 3 FREE R VALUE TEST SET COUNT : 3736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8300 - 6.2900 1.00 1456 139 0.2062 0.2535 REMARK 3 2 6.2800 - 4.9900 1.00 1448 135 0.1996 0.2112 REMARK 3 3 4.9900 - 4.3600 1.00 1446 143 0.1881 0.1935 REMARK 3 4 4.3600 - 3.9600 1.00 1446 147 0.2050 0.2206 REMARK 3 5 3.9600 - 3.6800 1.00 1448 142 0.2321 0.2921 REMARK 3 6 3.6800 - 3.4600 1.00 1442 136 0.2624 0.3727 REMARK 3 7 3.4600 - 3.2900 1.00 1466 145 0.2584 0.2690 REMARK 3 8 3.2900 - 3.1400 1.00 1471 134 0.2897 0.3392 REMARK 3 9 3.1400 - 3.0200 1.00 1435 147 0.2793 0.3623 REMARK 3 10 3.0200 - 2.9200 1.00 1444 136 0.2902 0.3186 REMARK 3 11 2.9200 - 2.8300 1.00 1428 150 0.2831 0.3362 REMARK 3 12 2.8300 - 2.7500 1.00 1467 146 0.2772 0.2993 REMARK 3 13 2.7500 - 2.6700 1.00 1431 134 0.2851 0.2815 REMARK 3 14 2.6700 - 2.6100 1.00 1450 142 0.2816 0.3285 REMARK 3 15 2.6100 - 2.5500 1.00 1438 138 0.3253 0.3391 REMARK 3 16 2.5500 - 2.5000 1.00 1465 137 0.3322 0.4356 REMARK 3 17 2.5000 - 2.4500 1.00 1460 135 0.3346 0.3792 REMARK 3 18 2.4500 - 2.4000 1.00 1467 139 0.3784 0.4321 REMARK 3 19 2.4000 - 2.3600 1.00 1413 145 0.3944 0.4689 REMARK 3 20 2.3600 - 2.3200 1.00 1462 122 0.4065 0.4081 REMARK 3 21 2.3200 - 2.2800 1.00 1475 146 0.4081 0.4157 REMARK 3 22 2.2800 - 2.2400 1.00 1421 133 0.4196 0.4478 REMARK 3 23 2.2400 - 2.2100 1.00 1449 149 0.4265 0.4941 REMARK 3 24 2.2100 - 2.1800 1.00 1482 141 0.4323 0.4948 REMARK 3 25 2.1800 - 2.1500 1.00 1486 116 0.4505 0.4680 REMARK 3 26 2.1500 - 2.1200 1.00 1397 157 0.4630 0.5033 REMARK 3 27 2.1200 - 2.1000 0.85 1248 102 0.4751 0.5244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.383 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.946 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3310 REMARK 3 ANGLE : 0.643 4443 REMARK 3 CHIRALITY : 0.044 426 REMARK 3 PLANARITY : 0.004 601 REMARK 3 DIHEDRAL : 24.194 1237 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZGA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1300045466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.17400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8ZG8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DIVALENTS BUFFER SYSTEM 2 PH 7.5 REMARK 280 PRECIPITANT MIX 4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.36450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.88450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.21950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.88450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.36450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.21950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 48.72900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -43.21950 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.88450 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 366 REMARK 465 ARG B 366 REMARK 465 SER C 346 REMARK 465 LYS C 347 REMARK 465 ARG C 366 REMARK 465 SER E 346 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 311 SG REMARK 620 2 CYS A 314 SG 105.4 REMARK 620 3 CYS A 338 SG 116.1 119.3 REMARK 620 4 CYS A 341 SG 112.2 113.4 90.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 317 O REMARK 620 2 TYR C 317 O 123.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 326 SG REMARK 620 2 CYS A 329 SG 106.3 REMARK 620 3 HIS A 356 ND1 122.2 115.3 REMARK 620 4 HIS A 360 ND1 102.1 92.3 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 311 SG REMARK 620 2 CYS B 314 SG 110.7 REMARK 620 3 CYS B 338 SG 112.1 115.4 REMARK 620 4 CYS B 341 SG 111.1 109.7 97.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 317 O REMARK 620 2 TYR E 317 O 41.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 326 SG REMARK 620 2 CYS B 329 SG 102.4 REMARK 620 3 HIS B 356 ND1 108.1 112.1 REMARK 620 4 HIS B 360 ND1 104.5 121.4 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 311 SG REMARK 620 2 CYS C 314 SG 103.8 REMARK 620 3 CYS C 338 SG 115.6 119.4 REMARK 620 4 CYS C 341 SG 108.5 107.1 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 326 SG REMARK 620 2 CYS C 329 SG 110.9 REMARK 620 3 HIS C 356 ND1 106.0 110.4 REMARK 620 4 HIS C 360 ND1 111.5 110.3 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 311 SG REMARK 620 2 CYS D 314 SG 108.0 REMARK 620 3 CYS D 338 SG 115.9 117.5 REMARK 620 4 CYS D 341 SG 109.1 110.8 94.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 326 SG REMARK 620 2 CYS D 329 SG 109.3 REMARK 620 3 HIS D 356 ND1 109.0 121.1 REMARK 620 4 HIS D 360 ND1 101.6 104.9 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 311 SG REMARK 620 2 CYS E 314 SG 104.5 REMARK 620 3 CYS E 338 SG 113.9 119.0 REMARK 620 4 CYS E 341 SG 105.1 115.8 98.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 326 SG REMARK 620 2 CYS E 329 SG 112.4 REMARK 620 3 HIS E 356 ND1 113.6 103.1 REMARK 620 4 HIS E 360 ND1 111.8 94.1 119.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 311 SG REMARK 620 2 CYS F 314 SG 102.6 REMARK 620 3 CYS F 338 SG 120.9 118.5 REMARK 620 4 CYS F 341 SG 116.0 99.2 97.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 326 SG REMARK 620 2 CYS F 329 SG 108.4 REMARK 620 3 HIS F 356 ND1 111.4 116.4 REMARK 620 4 HIS F 360 ND1 106.3 101.3 112.1 REMARK 620 N 1 2 3 DBREF 8ZGA A 298 301 PDB 8ZGA 8ZGA 298 301 DBREF 8ZGA A 302 366 UNP Q8LBL5 PRT1_ARATH 302 366 DBREF 8ZGA B 298 301 PDB 8ZGA 8ZGA 298 301 DBREF 8ZGA B 302 366 UNP Q8LBL5 PRT1_ARATH 302 366 DBREF 8ZGA C 298 301 PDB 8ZGA 8ZGA 298 301 DBREF 8ZGA C 302 366 UNP Q8LBL5 PRT1_ARATH 302 366 DBREF 8ZGA D 298 301 PDB 8ZGA 8ZGA 298 301 DBREF 8ZGA D 302 366 UNP Q8LBL5 PRT1_ARATH 302 366 DBREF 8ZGA E 298 301 PDB 8ZGA 8ZGA 298 301 DBREF 8ZGA E 302 366 UNP Q8LBL5 PRT1_ARATH 302 366 DBREF 8ZGA F 298 301 PDB 8ZGA 8ZGA 298 301 DBREF 8ZGA F 302 366 UNP Q8LBL5 PRT1_ARATH 302 366 SEQRES 1 A 69 PHE LYS PHE GLY GLY SER ASN VAL HIS PHE GLY ALA GLY SEQRES 2 A 69 CYS ASP SER CYS GLY VAL TYR PRO ILE ILE GLY ASP ARG SEQRES 3 A 69 TYR ARG CYS LYS ASP CYS LYS GLU GLU ILE GLY TYR ASP SEQRES 4 A 69 LEU CYS LYS ASP CYS TYR GLU THR PRO SER LYS VAL PRO SEQRES 5 A 69 GLY ARG PHE ASN GLN GLN HIS THR PRO ASP HIS ARG LEU SEQRES 6 A 69 GLU LEU ALA ARG SEQRES 1 B 69 PHE LYS PHE GLY GLY SER ASN VAL HIS PHE GLY ALA GLY SEQRES 2 B 69 CYS ASP SER CYS GLY VAL TYR PRO ILE ILE GLY ASP ARG SEQRES 3 B 69 TYR ARG CYS LYS ASP CYS LYS GLU GLU ILE GLY TYR ASP SEQRES 4 B 69 LEU CYS LYS ASP CYS TYR GLU THR PRO SER LYS VAL PRO SEQRES 5 B 69 GLY ARG PHE ASN GLN GLN HIS THR PRO ASP HIS ARG LEU SEQRES 6 B 69 GLU LEU ALA ARG SEQRES 1 C 69 PHE LYS PHE GLY GLY SER ASN VAL HIS PHE GLY ALA GLY SEQRES 2 C 69 CYS ASP SER CYS GLY VAL TYR PRO ILE ILE GLY ASP ARG SEQRES 3 C 69 TYR ARG CYS LYS ASP CYS LYS GLU GLU ILE GLY TYR ASP SEQRES 4 C 69 LEU CYS LYS ASP CYS TYR GLU THR PRO SER LYS VAL PRO SEQRES 5 C 69 GLY ARG PHE ASN GLN GLN HIS THR PRO ASP HIS ARG LEU SEQRES 6 C 69 GLU LEU ALA ARG SEQRES 1 D 69 PHE LYS PHE GLY GLY SER ASN VAL HIS PHE GLY ALA GLY SEQRES 2 D 69 CYS ASP SER CYS GLY VAL TYR PRO ILE ILE GLY ASP ARG SEQRES 3 D 69 TYR ARG CYS LYS ASP CYS LYS GLU GLU ILE GLY TYR ASP SEQRES 4 D 69 LEU CYS LYS ASP CYS TYR GLU THR PRO SER LYS VAL PRO SEQRES 5 D 69 GLY ARG PHE ASN GLN GLN HIS THR PRO ASP HIS ARG LEU SEQRES 6 D 69 GLU LEU ALA ARG SEQRES 1 E 69 PHE LYS PHE GLY GLY SER ASN VAL HIS PHE GLY ALA GLY SEQRES 2 E 69 CYS ASP SER CYS GLY VAL TYR PRO ILE ILE GLY ASP ARG SEQRES 3 E 69 TYR ARG CYS LYS ASP CYS LYS GLU GLU ILE GLY TYR ASP SEQRES 4 E 69 LEU CYS LYS ASP CYS TYR GLU THR PRO SER LYS VAL PRO SEQRES 5 E 69 GLY ARG PHE ASN GLN GLN HIS THR PRO ASP HIS ARG LEU SEQRES 6 E 69 GLU LEU ALA ARG SEQRES 1 F 69 PHE LYS PHE GLY GLY SER ASN VAL HIS PHE GLY ALA GLY SEQRES 2 F 69 CYS ASP SER CYS GLY VAL TYR PRO ILE ILE GLY ASP ARG SEQRES 3 F 69 TYR ARG CYS LYS ASP CYS LYS GLU GLU ILE GLY TYR ASP SEQRES 4 F 69 LEU CYS LYS ASP CYS TYR GLU THR PRO SER LYS VAL PRO SEQRES 5 F 69 GLY ARG PHE ASN GLN GLN HIS THR PRO ASP HIS ARG LEU SEQRES 6 F 69 GLU LEU ALA ARG HET ZN A 401 1 HET ZN A 402 1 HET MG A 403 1 HET ZN B 401 1 HET ZN B 402 1 HET MG B 403 1 HET ZN C 401 1 HET ZN C 402 1 HET ZN D 401 1 HET ZN D 402 1 HET ZN E 401 1 HET ZN E 402 1 HET ZN F 401 1 HET ZN F 402 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 7 ZN 12(ZN 2+) FORMUL 9 MG 2(MG 2+) FORMUL 21 HOH *13(H2 O) HELIX 1 AA1 GLY A 301 SER A 303 5 3 HELIX 2 AA2 LYS A 339 THR A 344 1 6 HELIX 3 AA3 GLY B 301 SER B 303 5 3 HELIX 4 AA4 LYS B 339 THR B 344 1 6 HELIX 5 AA5 GLY C 301 SER C 303 5 3 HELIX 6 AA6 LYS C 339 THR C 344 1 6 HELIX 7 AA7 GLY D 301 SER D 303 5 3 HELIX 8 AA8 LYS D 339 THR D 344 1 6 HELIX 9 AA9 GLY E 301 SER E 303 5 3 HELIX 10 AB1 LYS E 339 THR E 344 1 6 HELIX 11 AB2 GLY F 301 SER F 303 5 3 HELIX 12 AB3 LYS F 339 THR F 344 1 6 SHEET 1 AA1 2 VAL A 305 HIS A 306 0 SHEET 2 AA1 2 ILE A 319 ILE A 320 -1 O ILE A 319 N HIS A 306 SHEET 1 AA2 3 ASP A 336 CYS A 338 0 SHEET 2 AA2 3 ARG A 323 CYS A 326 -1 N TYR A 324 O LEU A 337 SHEET 3 AA2 3 LEU A 362 LEU A 364 -1 O GLU A 363 N ARG A 325 SHEET 1 AA3 2 VAL B 305 HIS B 306 0 SHEET 2 AA3 2 ILE B 319 ILE B 320 -1 O ILE B 319 N HIS B 306 SHEET 1 AA4 3 ASP B 336 CYS B 338 0 SHEET 2 AA4 3 ARG B 323 CYS B 326 -1 N TYR B 324 O LEU B 337 SHEET 3 AA4 3 LEU B 362 LEU B 364 -1 O GLU B 363 N ARG B 325 SHEET 1 AA5 2 VAL C 305 HIS C 306 0 SHEET 2 AA5 2 ILE C 319 ILE C 320 -1 O ILE C 319 N HIS C 306 SHEET 1 AA6 3 ASP C 336 CYS C 338 0 SHEET 2 AA6 3 ARG C 323 CYS C 326 -1 N TYR C 324 O LEU C 337 SHEET 3 AA6 3 LEU C 362 LEU C 364 -1 O GLU C 363 N ARG C 325 SHEET 1 AA7 2 VAL D 305 HIS D 306 0 SHEET 2 AA7 2 ILE D 319 ILE D 320 -1 O ILE D 319 N HIS D 306 SHEET 1 AA8 3 ASP D 336 CYS D 338 0 SHEET 2 AA8 3 ARG D 323 CYS D 326 -1 N TYR D 324 O LEU D 337 SHEET 3 AA8 3 LEU D 362 ALA D 365 -1 O ALA D 365 N ARG D 323 SHEET 1 AA9 2 VAL E 305 HIS E 306 0 SHEET 2 AA9 2 ILE E 319 ILE E 320 -1 O ILE E 319 N HIS E 306 SHEET 1 AB1 3 ASP E 336 CYS E 338 0 SHEET 2 AB1 3 ARG E 323 CYS E 326 -1 N TYR E 324 O LEU E 337 SHEET 3 AB1 3 LEU E 362 LEU E 364 -1 O GLU E 363 N ARG E 325 SHEET 1 AB2 2 VAL F 305 HIS F 306 0 SHEET 2 AB2 2 ILE F 319 ILE F 320 -1 O ILE F 319 N HIS F 306 SHEET 1 AB3 3 ASP F 336 CYS F 338 0 SHEET 2 AB3 3 ARG F 323 CYS F 326 -1 N TYR F 324 O LEU F 337 SHEET 3 AB3 3 LEU F 362 LEU F 364 -1 O GLU F 363 N ARG F 325 LINK SG CYS A 311 ZN ZN A 401 1555 1555 2.22 LINK SG CYS A 314 ZN ZN A 401 1555 1555 2.31 LINK O TYR A 317 MG MG A 403 1555 1555 2.14 LINK SG CYS A 326 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 329 ZN ZN A 402 1555 1555 2.26 LINK SG CYS A 338 ZN ZN A 401 1555 1555 2.26 LINK SG CYS A 341 ZN ZN A 401 1555 1555 2.42 LINK ND1 HIS A 356 ZN ZN A 402 1555 1555 2.03 LINK ND1 HIS A 360 ZN ZN A 402 1555 1555 2.02 LINK MG MG A 403 O TYR C 317 1555 1555 2.02 LINK SG CYS B 311 ZN ZN B 401 1555 1555 2.26 LINK SG CYS B 314 ZN ZN B 401 1555 1555 2.28 LINK O TYR B 317 MG MG B 403 1555 1555 2.03 LINK SG CYS B 326 ZN ZN B 402 1555 1555 2.27 LINK SG CYS B 329 ZN ZN B 402 1555 1555 2.22 LINK SG CYS B 338 ZN ZN B 401 1555 1555 2.28 LINK SG CYS B 341 ZN ZN B 401 1555 1555 2.33 LINK ND1 HIS B 356 ZN ZN B 402 1555 1555 2.01 LINK ND1 HIS B 360 ZN ZN B 402 1555 1555 2.02 LINK MG MG B 403 O TYR E 317 3655 1555 2.33 LINK SG CYS C 311 ZN ZN C 401 1555 1555 2.36 LINK SG CYS C 314 ZN ZN C 401 1555 1555 2.32 LINK SG CYS C 326 ZN ZN C 402 1555 1555 2.26 LINK SG CYS C 329 ZN ZN C 402 1555 1555 2.29 LINK SG CYS C 338 ZN ZN C 401 1555 1555 2.19 LINK SG CYS C 341 ZN ZN C 401 1555 1555 2.34 LINK ND1 HIS C 356 ZN ZN C 402 1555 1555 2.02 LINK ND1 HIS C 360 ZN ZN C 402 1555 1555 2.03 LINK SG CYS D 311 ZN ZN D 401 1555 1555 2.31 LINK SG CYS D 314 ZN ZN D 401 1555 1555 2.26 LINK SG CYS D 326 ZN ZN D 402 1555 1555 2.30 LINK SG CYS D 329 ZN ZN D 402 1555 1555 2.32 LINK SG CYS D 338 ZN ZN D 401 1555 1555 2.32 LINK SG CYS D 341 ZN ZN D 401 1555 1555 2.37 LINK ND1 HIS D 356 ZN ZN D 402 1555 1555 2.01 LINK ND1 HIS D 360 ZN ZN D 402 1555 1555 2.02 LINK SG CYS E 311 ZN ZN E 401 1555 1555 2.32 LINK SG CYS E 314 ZN ZN E 401 1555 1555 2.31 LINK SG CYS E 326 ZN ZN E 402 1555 1555 2.14 LINK SG CYS E 329 ZN ZN E 402 1555 1555 2.34 LINK SG CYS E 338 ZN ZN E 401 1555 1555 2.29 LINK SG CYS E 341 ZN ZN E 401 1555 1555 2.32 LINK ND1 HIS E 356 ZN ZN E 402 1555 1555 2.03 LINK ND1 HIS E 360 ZN ZN E 402 1555 1555 2.02 LINK SG CYS F 311 ZN ZN F 401 1555 1555 2.31 LINK SG CYS F 314 ZN ZN F 401 1555 1555 2.30 LINK SG CYS F 326 ZN ZN F 402 1555 1555 2.25 LINK SG CYS F 329 ZN ZN F 402 1555 1555 2.32 LINK SG CYS F 338 ZN ZN F 401 1555 1555 2.28 LINK SG CYS F 341 ZN ZN F 401 1555 1555 2.36 LINK ND1 HIS F 356 ZN ZN F 402 1555 1555 2.02 LINK ND1 HIS F 360 ZN ZN F 402 1555 1555 2.03 CISPEP 1 TYR A 317 PRO A 318 0 -2.58 CISPEP 2 TYR B 317 PRO B 318 0 -5.64 CISPEP 3 TYR C 317 PRO C 318 0 -4.04 CISPEP 4 TYR D 317 PRO D 318 0 -3.27 CISPEP 5 TYR E 317 PRO E 318 0 -0.06 CISPEP 6 TYR F 317 PRO F 318 0 -2.34 CRYST1 48.729 86.439 89.769 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020522 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011140 0.00000 TER 1031 ALA A 365 TER 2062 ALA B 365 TER 3060 ALA C 365 TER 4115 ARG D 366 TER 5159 ARG E 366 TER 6214 ARG F 366 HETATM 6215 ZN ZN A 401 12.128 14.903 24.195 1.00 67.49 ZN HETATM 6216 ZN ZN A 402 -2.420 13.466 26.650 1.00 77.65 ZN HETATM 6217 MG MG A 403 16.631 25.403 26.913 1.00 23.80 MG HETATM 6218 ZN ZN B 401 36.244 9.243 28.895 1.00 70.85 ZN HETATM 6219 ZN ZN B 402 22.252 12.791 25.550 1.00 81.81 ZN HETATM 6220 MG MG B 403 41.131 -0.259 24.287 1.00128.27 MG HETATM 6221 ZN ZN C 401 21.630 23.182 36.862 1.00 59.13 ZN HETATM 6222 ZN ZN C 402 27.573 34.291 44.892 1.00 64.89 ZN HETATM 6223 ZN ZN D 401 29.048 23.584 19.154 1.00 57.40 ZN HETATM 6224 ZN ZN D 402 28.389 26.691 4.574 1.00 81.44 ZN HETATM 6225 ZN ZN E 401 -3.083 42.591 14.109 1.00 69.70 ZN HETATM 6226 ZN ZN E 402 -3.171 33.105 2.870 1.00 82.80 ZN HETATM 6227 ZN ZN F 401 2.501 50.133 31.418 1.00 75.68 ZN HETATM 6228 ZN ZN F 402 -3.658 42.307 42.391 1.00 96.16 ZN HETATM 6229 O HOH A 501 16.362 23.843 22.372 1.00 39.69 O HETATM 6230 O HOH B 501 37.975 3.525 31.568 1.00 55.29 O HETATM 6231 O HOH B 502 34.365 -12.637 34.818 1.00 56.53 O HETATM 6232 O HOH C 501 10.738 34.311 33.481 1.00 53.90 O HETATM 6233 O HOH C 502 16.292 29.628 24.643 1.00 34.94 O HETATM 6234 O HOH D 501 31.018 36.713 21.348 1.00 60.56 O HETATM 6235 O HOH D 502 30.780 30.004 22.007 1.00 53.32 O HETATM 6236 O HOH D 503 17.247 31.816 22.866 1.00 27.87 O HETATM 6237 O HOH E 501 4.547 30.468 18.062 1.00 53.30 O HETATM 6238 O HOH E 502 -5.148 31.144 19.658 1.00 43.63 O HETATM 6239 O HOH E 503 10.671 37.167 20.492 1.00 65.60 O HETATM 6240 O HOH E 504 8.229 36.037 21.190 1.00 60.73 O HETATM 6241 O HOH F 501 23.417 40.944 30.321 1.00 43.86 O CONECT 184 6215 CONECT 217 6215 CONECT 248 6217 CONECT 411 6216 CONECT 455 6216 CONECT 595 6215 CONECT 639 6215 CONECT 876 6216 CONECT 933 6216 CONECT 1215 6218 CONECT 1248 6218 CONECT 1279 6220 CONECT 1442 6219 CONECT 1486 6219 CONECT 1626 6218 CONECT 1670 6218 CONECT 1907 6219 CONECT 1964 6219 CONECT 2246 6221 CONECT 2279 6221 CONECT 2310 6217 CONECT 2473 6222 CONECT 2517 6222 CONECT 2657 6221 CONECT 2701 6221 CONECT 2905 6222 CONECT 2962 6222 CONECT 3244 6223 CONECT 3277 6223 CONECT 3471 6224 CONECT 3515 6224 CONECT 3655 6223 CONECT 3699 6223 CONECT 3936 6224 CONECT 3993 6224 CONECT 4299 6225 CONECT 4332 6225 CONECT 4526 6226 CONECT 4570 6226 CONECT 4710 6225 CONECT 4754 6225 CONECT 4980 6226 CONECT 5037 6226 CONECT 5343 6227 CONECT 5376 6227 CONECT 5570 6228 CONECT 5614 6228 CONECT 5754 6227 CONECT 5798 6227 CONECT 6035 6228 CONECT 6092 6228 CONECT 6215 184 217 595 639 CONECT 6216 411 455 876 933 CONECT 6217 248 2310 CONECT 6218 1215 1248 1626 1670 CONECT 6219 1442 1486 1907 1964 CONECT 6220 1279 CONECT 6221 2246 2279 2657 2701 CONECT 6222 2473 2517 2905 2962 CONECT 6223 3244 3277 3655 3699 CONECT 6224 3471 3515 3936 3993 CONECT 6225 4299 4332 4710 4754 CONECT 6226 4526 4570 4980 5037 CONECT 6227 5343 5376 5754 5798 CONECT 6228 5570 5614 6035 6092 MASTER 386 0 14 12 30 0 0 6 3255 6 65 36 END