HEADER LYASE 13-MAY-24 8ZIF TITLE GAMMA-LYASE CNDF IN COMPLEX WITH PYRIDOXAL 5'-PHOSPHATE, L-HOMOSERINE TITLE 2 AND ETHYL ACETOACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLP DEPENDENT GAMMA-LYASE CNDF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SEQUENCE MATCHES GENBANK CODE KAK5801372.1, EXCEPT FOR COMPND 6 TWO MISMATCHES (F15L AND L561F). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM CITRINUM; SOURCE 3 ORGANISM_TAXID: 5077; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PLP DEPENDENT, GAMMA-LYASE, C-C BOND FORMATION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GAO,J.ZHOU REVDAT 2 26-NOV-25 8ZIF 1 JRNL REVDAT 1 19-NOV-25 8ZIF 0 JRNL AUTH Y.GAO,B.WANG,J.ZHOU,Y.GU JRNL TITL STRUCTURE AND MECHANISM OF THE PYRIDOXAL JRNL TITL 2 5'-PHOSPHATE-DEPENDENT AMINO ACID GAMMA-SUBSTITUTION ENZYME JRNL TITL 3 IN 6-ALKYL-PIPECOLATE BIOSYNTHESIS JRNL REF ACS CATALYSIS 18893 2025 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.5C04786 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8900 - 5.9000 1.00 2952 157 0.2053 0.2221 REMARK 3 2 5.9000 - 4.6800 1.00 2826 147 0.2246 0.2487 REMARK 3 3 4.6800 - 4.0900 1.00 2821 138 0.2198 0.2550 REMARK 3 4 4.0900 - 3.7200 1.00 2781 143 0.2499 0.2790 REMARK 3 5 3.7200 - 3.4500 1.00 2779 141 0.2554 0.2497 REMARK 3 6 3.4500 - 3.2500 0.99 2731 143 0.2802 0.3145 REMARK 3 7 3.2500 - 3.0800 0.99 2749 139 0.3315 0.4090 REMARK 3 8 3.0800 - 2.9500 0.99 2721 152 0.3196 0.3646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.408 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.844 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7377 REMARK 3 ANGLE : 1.200 10033 REMARK 3 CHIRALITY : 0.069 1132 REMARK 3 PLANARITY : 0.008 1290 REMARK 3 DIHEDRAL : 14.052 2637 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1300047742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPX REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PROPANE PH 6.5, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.85450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.53800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.53800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.85450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ASP A 3 REMARK 465 PRO A 4 REMARK 465 ASN A 5 REMARK 465 PHE A 6 REMARK 465 GLN A 7 REMARK 465 ASN A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 LYS A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 PRO A 19 REMARK 465 LEU A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 GLY A 27 REMARK 465 ASP A 28 REMARK 465 PRO A 29 REMARK 465 HIS A 30 REMARK 465 ALA A 31 REMARK 465 VAL A 32 REMARK 465 SER A 33 REMARK 465 PHE A 34 REMARK 465 SER A 35 REMARK 465 LEU A 36 REMARK 465 PRO A 37 REMARK 465 THR A 38 REMARK 465 TRP A 39 REMARK 465 ALA A 40 REMARK 465 SER A 41 REMARK 465 VAL A 42 REMARK 465 ALA A 43 REMARK 465 GLY A 44 REMARK 465 ASN A 45 REMARK 465 MET A 46 REMARK 465 ALA A 47 REMARK 465 GLY A 48 REMARK 465 GLU A 49 REMARK 465 ALA A 50 REMARK 465 TRP A 51 REMARK 465 VAL A 52 REMARK 465 ARG A 53 REMARK 465 GLY A 54 REMARK 465 LYS A 55 REMARK 465 LYS A 56 REMARK 465 LYS A 57 REMARK 465 THR A 58 REMARK 465 THR A 59 REMARK 465 TYR A 60 REMARK 465 PRO A 61 REMARK 465 ARG A 62 REMARK 465 MET A 63 REMARK 465 GLY A 64 REMARK 465 PHE A 65 REMARK 465 CYS A 66 REMARK 465 PRO A 67 REMARK 465 ILE A 68 REMARK 465 VAL A 69 REMARK 465 GLY A 70 REMARK 465 PRO A 83 REMARK 465 THR A 84 REMARK 465 PHE A 143 REMARK 465 GLU A 144 REMARK 465 GLU A 145 REMARK 465 ASP A 178 REMARK 465 GLU A 179 REMARK 465 ASP A 180 REMARK 465 GLU A 181 REMARK 465 GLY A 197 REMARK 465 LEU A 198 REMARK 465 TRP A 512 REMARK 465 GLU A 513 REMARK 465 GLU A 514 REMARK 465 GLN A 515 REMARK 465 ASP A 516 REMARK 465 TRP A 517 REMARK 465 ALA A 518 REMARK 465 ALA A 519 REMARK 465 GLU A 520 REMARK 465 TYR A 521 REMARK 465 GLY A 522 REMARK 465 ALA A 554 REMARK 465 THR A 555 REMARK 465 LEU A 556 REMARK 465 CYS A 557 REMARK 465 ARG A 558 REMARK 465 THR A 559 REMARK 465 THR A 560 REMARK 465 PHE A 561 REMARK 465 CYS A 562 REMARK 465 LYS A 563 REMARK 465 SER A 564 REMARK 465 GLU A 565 REMARK 465 ARG A 566 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ASP B 3 REMARK 465 PRO B 4 REMARK 465 ASN B 5 REMARK 465 PHE B 6 REMARK 465 GLN B 7 REMARK 465 ASN B 8 REMARK 465 ILE B 9 REMARK 465 ASP B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 LEU B 15 REMARK 465 GLY B 16 REMARK 465 ALA B 17 REMARK 465 GLN B 18 REMARK 465 PRO B 19 REMARK 465 LEU B 20 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 SER B 23 REMARK 465 HIS B 24 REMARK 465 PRO B 25 REMARK 465 PRO B 26 REMARK 465 GLY B 27 REMARK 465 ASP B 28 REMARK 465 PRO B 29 REMARK 465 HIS B 30 REMARK 465 ALA B 31 REMARK 465 VAL B 32 REMARK 465 SER B 33 REMARK 465 PHE B 34 REMARK 465 SER B 35 REMARK 465 LEU B 36 REMARK 465 PRO B 37 REMARK 465 THR B 38 REMARK 465 TRP B 39 REMARK 465 ALA B 40 REMARK 465 SER B 41 REMARK 465 VAL B 42 REMARK 465 ALA B 43 REMARK 465 GLY B 44 REMARK 465 ASN B 45 REMARK 465 MET B 46 REMARK 465 ALA B 47 REMARK 465 GLY B 48 REMARK 465 GLU B 49 REMARK 465 ALA B 50 REMARK 465 TRP B 51 REMARK 465 VAL B 52 REMARK 465 ARG B 53 REMARK 465 GLY B 54 REMARK 465 LYS B 55 REMARK 465 LYS B 56 REMARK 465 LYS B 57 REMARK 465 THR B 58 REMARK 465 THR B 59 REMARK 465 TYR B 60 REMARK 465 PRO B 61 REMARK 465 ARG B 62 REMARK 465 MET B 63 REMARK 465 GLY B 64 REMARK 465 PHE B 65 REMARK 465 CYS B 66 REMARK 465 PRO B 67 REMARK 465 ILE B 68 REMARK 465 VAL B 69 REMARK 465 GLY B 70 REMARK 465 ASP B 178 REMARK 465 GLU B 179 REMARK 465 ASP B 180 REMARK 465 GLU B 181 REMARK 465 PRO B 182 REMARK 465 ASP B 183 REMARK 465 ALA B 196 REMARK 465 GLY B 197 REMARK 465 PRO B 256 REMARK 465 GLY B 257 REMARK 465 TRP B 512 REMARK 465 GLU B 513 REMARK 465 GLU B 514 REMARK 465 GLN B 515 REMARK 465 ASP B 516 REMARK 465 TRP B 517 REMARK 465 ALA B 518 REMARK 465 ALA B 519 REMARK 465 ALA B 554 REMARK 465 THR B 555 REMARK 465 LEU B 556 REMARK 465 CYS B 557 REMARK 465 ARG B 558 REMARK 465 THR B 559 REMARK 465 THR B 560 REMARK 465 PHE B 561 REMARK 465 CYS B 562 REMARK 465 LYS B 563 REMARK 465 SER B 564 REMARK 465 GLU B 565 REMARK 465 ARG B 566 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 122 CG CD OE1 NE2 REMARK 470 GLN A 185 CG CD OE1 NE2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LYS B 306 CG CD CE NZ REMARK 470 ARG B 389 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 390 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 550 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 108 91.15 -171.71 REMARK 500 ALA A 110 -2.81 73.28 REMARK 500 ALA A 147 -98.57 -79.83 REMARK 500 THR A 149 -4.71 -56.11 REMARK 500 TYR A 184 20.28 -78.80 REMARK 500 TRP A 266 107.39 -46.12 REMARK 500 LLP A 366 -130.98 -76.95 REMARK 500 LLP A 366 -129.95 -78.37 REMARK 500 ASP B 108 85.61 -170.96 REMARK 500 ALA B 110 -16.26 84.54 REMARK 500 LEU B 267 -163.46 -76.79 REMARK 500 SER B 269 14.07 50.07 REMARK 500 ALA B 303 1.98 -66.12 REMARK 500 LLP B 366 -128.28 -73.56 REMARK 500 SER B 441 33.71 -94.26 REMARK 500 ASP B 443 -78.68 -68.72 REMARK 500 TYR B 447 144.97 -172.00 REMARK 500 ALA B 510 49.81 -142.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 8ZIF A -1 566 PDB 8ZIF 8ZIF -1 566 DBREF 8ZIF B -1 566 PDB 8ZIF 8ZIF -1 566 SEQRES 1 A 568 GLY SER MET ARG ASP PRO ASN PHE GLN ASN ILE ASP LYS SEQRES 2 A 568 VAL ALA LEU LEU GLY ALA GLN PRO LEU GLY SER SER HIS SEQRES 3 A 568 PRO PRO GLY ASP PRO HIS ALA VAL SER PHE SER LEU PRO SEQRES 4 A 568 THR TRP ALA SER VAL ALA GLY ASN MET ALA GLY GLU ALA SEQRES 5 A 568 TRP VAL ARG GLY LYS LYS LYS THR THR TYR PRO ARG MET SEQRES 6 A 568 GLY PHE CYS PRO ILE VAL GLY GLY LEU THR GLU ALA ALA SEQRES 7 A 568 LEU ILE ARG VAL LYS ARG PRO THR GLY VAL LYS ALA ARG SEQRES 8 A 568 ILE PHE ILE SER ARG GLU ALA ALA SER ARG LEU GLU HIS SEQRES 9 A 568 THR VAL LYS VAL LYS ASP PRO ALA ALA LYS VAL SER VAL SEQRES 10 A 568 VAL GLN PHE GLU LEU ARG GLN SER ASN SER PRO ASP LEU SEQRES 11 A 568 SER ASN TRP ALA ARG PHE VAL LEU VAL LEU PHE PRO GLU SEQRES 12 A 568 SER PHE GLU GLU ASP ALA PHE THR PHE TRP LEU ASN HIS SEQRES 13 A 568 GLY ASP GLY ILE SER ASN ARG HIS ALA GLU PHE CYS ASN SEQRES 14 A 568 ASN LEU LEU ASP PHE MET ASP SER ARG CYS ASP GLU ASP SEQRES 15 A 568 GLU PRO ASP TYR GLN THR CYS GLY PRO ARG SER GLY ASP SEQRES 16 A 568 LYS PRO ALA GLY LEU PRO THR TRP THR ASN SER GLY LEU SEQRES 17 A 568 GLU GLU LYS MET VAL ILE LYS SER VAL LEU ALA LYS CYS SEQRES 18 A 568 ILE ARG SER GLU ASN ALA ASP MET LEU PRO VAL GLN SER SEQRES 19 A 568 ASP ASP VAL PHE LEU TYR SER THR GLY MET MET ALA ILE SEQRES 20 A 568 GLY LYS ILE ALA ARG ALA MET LYS ASP MET PRO GLY ASP SEQRES 21 A 568 ASP THR ALA VAL ILE PHE GLY TRP LEU TYR SER GLY THR SEQRES 22 A 568 LEU PRO LEU VAL LYS ASP SER GLY TYR SER LYS PRO ILE SEQRES 23 A 568 LEU TYR GLY ARG GLY THR GLU GLU GLU LEU ASP LYS LEU SEQRES 24 A 568 GLU SER TYR LEU ALA ALA GLY GLY LYS CYS THR VAL LEU SEQRES 25 A 568 PHE THR GLU ILE THR SER ASN PRO GLN LEU HIS SER PRO SEQRES 26 A 568 ASN LEU VAL ARG ILE LYS ASN LEU ALA ASP GLU TYR GLY SEQRES 27 A 568 PHE THR VAL VAL VAL ASP ASP THR ILE GLY THR SER VAL SEQRES 28 A 568 ASN LEU ASP ILE LEU PRO TYR ALA ASP VAL VAL THR THR SEQRES 29 A 568 SER LEU THR LLP ILE PHE ASN GLY ALA CYS ASN ALA MET SEQRES 30 A 568 GLY GLY SER LEU ILE VAL ASN PRO ASN SER ARG HIS TYR SEQRES 31 A 568 ARG ARG ILE HIS THR TYR LEU GLN GLY HIS PHE GLU ASP SEQRES 32 A 568 LEU LEU PHE PRO ALA ASP ALA VAL VAL LEU SER GLU ASN SEQRES 33 A 568 CYS ILE ASP TYR PRO GLU ARG VAL LYS ARG CYS SER ALA SEQRES 34 A 568 THR ALA ARG ALA ILE ALA HIS PHE LEU ALA ALA HIS PRO SEQRES 35 A 568 SER ILE ASP TYR VAL ASN TYR PRO THR LEU VAL PRO SER SEQRES 36 A 568 ARG GLU GLU TYR GLU ARG TYR ARG ARG ASP GLY GLU GLY SEQRES 37 A 568 TYR GLY TYR LEU LEU SER ILE VAL PHE ARG GLU PRO ASP SEQRES 38 A 568 PHE ALA VAL ARG PHE PHE ASP ALA LEU ASP ILE TRP LYS SEQRES 39 A 568 GLY PRO SER ILE GLY THR ASN SER SER ILE ALA LEU PRO SEQRES 40 A 568 TYR SER VAL LEU ALA HIS TRP GLU GLU GLN ASP TRP ALA SEQRES 41 A 568 ALA GLU TYR GLY VAL PRO LYS HIS ILE VAL ARG LEU SER SEQRES 42 A 568 VAL GLY LEU GLU SER GLU ALA TRP LEU ARG ASP ARG VAL SEQRES 43 A 568 THR GLU ALA LEU ALA LYS ALA THR PRO ALA THR LEU CYS SEQRES 44 A 568 ARG THR THR PHE CYS LYS SER GLU ARG SEQRES 1 B 568 GLY SER MET ARG ASP PRO ASN PHE GLN ASN ILE ASP LYS SEQRES 2 B 568 VAL ALA LEU LEU GLY ALA GLN PRO LEU GLY SER SER HIS SEQRES 3 B 568 PRO PRO GLY ASP PRO HIS ALA VAL SER PHE SER LEU PRO SEQRES 4 B 568 THR TRP ALA SER VAL ALA GLY ASN MET ALA GLY GLU ALA SEQRES 5 B 568 TRP VAL ARG GLY LYS LYS LYS THR THR TYR PRO ARG MET SEQRES 6 B 568 GLY PHE CYS PRO ILE VAL GLY GLY LEU THR GLU ALA ALA SEQRES 7 B 568 LEU ILE ARG VAL LYS ARG PRO THR GLY VAL LYS ALA ARG SEQRES 8 B 568 ILE PHE ILE SER ARG GLU ALA ALA SER ARG LEU GLU HIS SEQRES 9 B 568 THR VAL LYS VAL LYS ASP PRO ALA ALA LYS VAL SER VAL SEQRES 10 B 568 VAL GLN PHE GLU LEU ARG GLN SER ASN SER PRO ASP LEU SEQRES 11 B 568 SER ASN TRP ALA ARG PHE VAL LEU VAL LEU PHE PRO GLU SEQRES 12 B 568 SER PHE GLU GLU ASP ALA PHE THR PHE TRP LEU ASN HIS SEQRES 13 B 568 GLY ASP GLY ILE SER ASN ARG HIS ALA GLU PHE CYS ASN SEQRES 14 B 568 ASN LEU LEU ASP PHE MET ASP SER ARG CYS ASP GLU ASP SEQRES 15 B 568 GLU PRO ASP TYR GLN THR CYS GLY PRO ARG SER GLY ASP SEQRES 16 B 568 LYS PRO ALA GLY LEU PRO THR TRP THR ASN SER GLY LEU SEQRES 17 B 568 GLU GLU LYS MET VAL ILE LYS SER VAL LEU ALA LYS CYS SEQRES 18 B 568 ILE ARG SER GLU ASN ALA ASP MET LEU PRO VAL GLN SER SEQRES 19 B 568 ASP ASP VAL PHE LEU TYR SER THR GLY MET MET ALA ILE SEQRES 20 B 568 GLY LYS ILE ALA ARG ALA MET LYS ASP MET PRO GLY ASP SEQRES 21 B 568 ASP THR ALA VAL ILE PHE GLY TRP LEU TYR SER GLY THR SEQRES 22 B 568 LEU PRO LEU VAL LYS ASP SER GLY TYR SER LYS PRO ILE SEQRES 23 B 568 LEU TYR GLY ARG GLY THR GLU GLU GLU LEU ASP LYS LEU SEQRES 24 B 568 GLU SER TYR LEU ALA ALA GLY GLY LYS CYS THR VAL LEU SEQRES 25 B 568 PHE THR GLU ILE THR SER ASN PRO GLN LEU HIS SER PRO SEQRES 26 B 568 ASN LEU VAL ARG ILE LYS ASN LEU ALA ASP GLU TYR GLY SEQRES 27 B 568 PHE THR VAL VAL VAL ASP ASP THR ILE GLY THR SER VAL SEQRES 28 B 568 ASN LEU ASP ILE LEU PRO TYR ALA ASP VAL VAL THR THR SEQRES 29 B 568 SER LEU THR LLP ILE PHE ASN GLY ALA CYS ASN ALA MET SEQRES 30 B 568 GLY GLY SER LEU ILE VAL ASN PRO ASN SER ARG HIS TYR SEQRES 31 B 568 ARG ARG ILE HIS THR TYR LEU GLN GLY HIS PHE GLU ASP SEQRES 32 B 568 LEU LEU PHE PRO ALA ASP ALA VAL VAL LEU SER GLU ASN SEQRES 33 B 568 CYS ILE ASP TYR PRO GLU ARG VAL LYS ARG CYS SER ALA SEQRES 34 B 568 THR ALA ARG ALA ILE ALA HIS PHE LEU ALA ALA HIS PRO SEQRES 35 B 568 SER ILE ASP TYR VAL ASN TYR PRO THR LEU VAL PRO SER SEQRES 36 B 568 ARG GLU GLU TYR GLU ARG TYR ARG ARG ASP GLY GLU GLY SEQRES 37 B 568 TYR GLY TYR LEU LEU SER ILE VAL PHE ARG GLU PRO ASP SEQRES 38 B 568 PHE ALA VAL ARG PHE PHE ASP ALA LEU ASP ILE TRP LYS SEQRES 39 B 568 GLY PRO SER ILE GLY THR ASN SER SER ILE ALA LEU PRO SEQRES 40 B 568 TYR SER VAL LEU ALA HIS TRP GLU GLU GLN ASP TRP ALA SEQRES 41 B 568 ALA GLU TYR GLY VAL PRO LYS HIS ILE VAL ARG LEU SER SEQRES 42 B 568 VAL GLY LEU GLU SER GLU ALA TRP LEU ARG ASP ARG VAL SEQRES 43 B 568 THR GLU ALA LEU ALA LYS ALA THR PRO ALA THR LEU CYS SEQRES 44 B 568 ARG THR THR PHE CYS LYS SER GLU ARG HET LLP A 366 30 HET LLP B 366 24 HET HSE A 601 8 HET EAC A 602 9 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM HSE L-HOMOSERINE HETNAM EAC ETHYL 3-OXOBUTANOATE HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HSE C4 H9 N O3 FORMUL 4 EAC C6 H10 O3 HELIX 1 AA1 GLY A 71 VAL A 80 1 10 HELIX 2 AA2 SER A 93 ASP A 108 1 16 HELIX 3 AA3 SER A 125 ALA A 132 1 8 HELIX 4 AA4 THR A 149 GLY A 157 1 9 HELIX 5 AA5 SER A 159 LEU A 170 1 12 HELIX 6 AA6 ASP A 171 MET A 173 5 3 HELIX 7 AA7 GLY A 205 ILE A 220 1 16 HELIX 8 AA8 GLN A 231 ASP A 233 5 3 HELIX 9 AA9 THR A 240 MET A 255 1 16 HELIX 10 AB1 GLY A 270 SER A 278 1 9 HELIX 11 AB2 THR A 290 ALA A 303 1 14 HELIX 12 AB3 ASN A 324 GLY A 336 1 13 HELIX 13 AB4 HIS A 387 HIS A 398 1 12 HELIX 14 AB5 PHE A 404 CYS A 415 1 12 HELIX 15 AB6 ASP A 417 ALA A 438 1 22 HELIX 16 AB7 SER A 453 ARG A 461 1 9 HELIX 17 AB8 GLU A 477 LEU A 488 1 12 HELIX 18 AB9 SER A 536 THR A 552 1 17 HELIX 19 AC1 LEU B 72 VAL B 80 1 9 HELIX 20 AC2 SER B 93 ASP B 108 1 16 HELIX 21 AC3 SER B 125 ALA B 132 1 8 HELIX 22 AC4 ASP B 146 GLY B 157 1 12 HELIX 23 AC5 SER B 159 ASN B 168 1 10 HELIX 24 AC6 LEU B 169 MET B 173 5 5 HELIX 25 AC7 THR B 202 SER B 204 5 3 HELIX 26 AC8 GLY B 205 ARG B 221 1 17 HELIX 27 AC9 GLN B 231 ASP B 233 5 3 HELIX 28 AD1 THR B 240 ASP B 254 1 15 HELIX 29 AD2 GLY B 270 SER B 278 1 9 HELIX 30 AD3 THR B 290 ALA B 303 1 14 HELIX 31 AD4 ASN B 324 GLY B 336 1 13 HELIX 32 AD5 HIS B 387 HIS B 398 1 12 HELIX 33 AD6 PHE B 404 CYS B 415 1 12 HELIX 34 AD7 ASP B 417 ALA B 438 1 22 HELIX 35 AD8 SER B 453 ARG B 461 1 9 HELIX 36 AD9 GLU B 477 LEU B 488 1 12 HELIX 37 AE1 SER B 536 ALA B 551 1 16 SHEET 1 AA1 4 VAL A 86 PHE A 91 0 SHEET 2 AA1 4 ARG A 133 PRO A 140 -1 O PHE A 139 N LYS A 87 SHEET 3 AA1 4 SER A 114 GLU A 119 -1 N PHE A 118 O PHE A 134 SHEET 4 AA1 4 ASP A 174 ARG A 176 -1 O ASP A 174 N GLU A 119 SHEET 1 AA2 7 VAL A 235 TYR A 238 0 SHEET 2 AA2 7 GLY A 377 VAL A 381 -1 O GLY A 377 N TYR A 238 SHEET 3 AA2 7 VAL A 359 SER A 363 -1 N THR A 362 O SER A 378 SHEET 4 AA2 7 THR A 338 ASP A 342 1 N VAL A 341 O THR A 361 SHEET 5 AA2 7 CYS A 307 GLU A 313 1 N THR A 308 O THR A 338 SHEET 6 AA2 7 THR A 260 PHE A 264 1 N PHE A 264 O PHE A 311 SHEET 7 AA2 7 ILE A 284 TYR A 286 1 O ILE A 284 N ALA A 261 SHEET 1 AA3 5 ILE A 442 ASN A 446 0 SHEET 2 AA3 5 LEU A 470 PHE A 475 -1 O SER A 472 N ASN A 446 SHEET 3 AA3 5 VAL A 528 SER A 531 -1 O VAL A 528 N ILE A 473 SHEET 4 AA3 5 ILE A 502 LEU A 504 -1 N ILE A 502 O SER A 531 SHEET 5 AA3 5 TRP A 491 LYS A 492 1 N TRP A 491 O ALA A 503 SHEET 1 AA4 4 VAL B 86 PHE B 91 0 SHEET 2 AA4 4 ARG B 133 PRO B 140 -1 O PHE B 139 N LYS B 87 SHEET 3 AA4 4 SER B 114 GLU B 119 -1 N PHE B 118 O PHE B 134 SHEET 4 AA4 4 ASP B 174 ARG B 176 -1 O ASP B 174 N GLU B 119 SHEET 1 AA5 7 VAL B 235 TYR B 238 0 SHEET 2 AA5 7 GLY B 377 VAL B 381 -1 O GLY B 377 N TYR B 238 SHEET 3 AA5 7 VAL B 359 SER B 363 -1 N THR B 362 O SER B 378 SHEET 4 AA5 7 THR B 338 ASP B 342 1 N VAL B 341 O THR B 361 SHEET 5 AA5 7 VAL B 309 GLU B 313 1 N LEU B 310 O VAL B 340 SHEET 6 AA5 7 THR B 260 ILE B 263 1 N VAL B 262 O PHE B 311 SHEET 7 AA5 7 LYS B 282 LEU B 285 1 O ILE B 284 N ILE B 263 SHEET 1 AA6 5 ILE B 442 ASN B 446 0 SHEET 2 AA6 5 LEU B 470 PHE B 475 -1 O VAL B 474 N TYR B 444 SHEET 3 AA6 5 VAL B 528 SER B 531 -1 O LEU B 530 N LEU B 471 SHEET 4 AA6 5 ILE B 502 PRO B 505 -1 N LEU B 504 O ARG B 529 SHEET 5 AA6 5 TRP B 491 LYS B 492 1 N TRP B 491 O ALA B 503 LINK C THR A 365 N LLP A 366 1555 1555 1.33 LINK C LLP A 366 N ILE A 367 1555 1555 1.35 LINK C4'ALLP A 366 N HSE A 601 1555 1555 1.47 LINK C THR B 365 N LLP B 366 1555 1555 1.34 LINK C LLP B 366 N ILE B 367 1555 1555 1.34 CISPEP 1 ASN A 317 PRO A 318 0 10.61 CISPEP 2 ASN B 317 PRO B 318 0 -3.42 CRYST1 83.709 100.650 129.076 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011946 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007747 0.00000 CONECT 2143 2163 CONECT 2148 2149 2156 CONECT 2149 2148 2150 2151 CONECT 2150 2149 CONECT 2151 2149 2152 2153 CONECT 2152 2151 CONECT 2153 2151 2154 2155 CONECT 2154 2153 2174 7202 CONECT 2155 2153 2156 2157 CONECT 2156 2148 2155 CONECT 2157 2155 2158 CONECT 2158 2157 2159 CONECT 2159 2158 2160 2161 2162 CONECT 2160 2159 CONECT 2161 2159 CONECT 2162 2159 CONECT 2163 2143 2164 2165 CONECT 2164 2163 2166 2176 CONECT 2165 2163 2167 2176 CONECT 2166 2164 2168 CONECT 2167 2165 2169 CONECT 2168 2166 2170 CONECT 2169 2167 2171 CONECT 2170 2168 2172 CONECT 2171 2169 2173 CONECT 2172 2170 2174 CONECT 2173 2171 2175 CONECT 2174 2154 2172 CONECT 2175 2173 CONECT 2176 2164 2165 2177 2178 CONECT 2177 2176 CONECT 2178 2176 CONECT 5760 5780 CONECT 5765 5766 5773 CONECT 5766 5765 5767 5768 CONECT 5767 5766 CONECT 5768 5766 5769 5770 CONECT 5769 5768 CONECT 5770 5768 5771 5772 CONECT 5771 5770 5786 CONECT 5772 5770 5773 5774 CONECT 5773 5765 5772 CONECT 5774 5772 5775 CONECT 5775 5774 5776 CONECT 5776 5775 5777 5778 5779 CONECT 5777 5776 CONECT 5778 5776 CONECT 5779 5776 CONECT 5780 5760 5781 CONECT 5781 5780 5782 5787 CONECT 5782 5781 5783 CONECT 5783 5782 5784 CONECT 5784 5783 5785 CONECT 5785 5784 5786 CONECT 5786 5771 5785 CONECT 5787 5781 5788 5789 CONECT 5788 5787 CONECT 5789 5787 CONECT 7202 2154 7203 CONECT 7203 7202 7204 7205 CONECT 7204 7203 7206 7207 CONECT 7205 7203 7208 CONECT 7206 7204 CONECT 7207 7204 CONECT 7208 7205 7209 CONECT 7209 7208 CONECT 7210 7211 CONECT 7211 7210 7212 CONECT 7212 7211 7213 CONECT 7213 7212 7214 7218 CONECT 7214 7213 CONECT 7215 7216 CONECT 7216 7215 7217 7218 CONECT 7217 7216 CONECT 7218 7213 7216 MASTER 475 0 4 37 32 0 0 6 7210 2 75 88 END