HEADER STRUCTURAL PROTEIN 21-MAY-24 8ZLV TITLE ASYMMETRIC DIMERIC STRUCTURE OF THE CATALYTIC DOMAIN IN TRUNCATED TITLE 2 THREONINE DEAMINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-THREONINE DEHYDRATASE BIOSYNTHETIC ILVA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THREONINE DEAMINASE; COMPND 5 EC: 4.3.1.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: ILVA, B3772, JW3745; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THREONINE DEAMINASE, PLP, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KHODI REVDAT 1 05-JUN-24 8ZLV 0 JRNL AUTH S.KHODI JRNL TITL ENGINEERING THREONINE DEAMINASE CATALYTIC DOMAIN INTO A JRNL TITL 2 TETRAMERIC CONFIGURATION, INDEPENDENT OF ALLOSTERIC JRNL TITL 3 REGULATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6900 - 4.9600 1.00 2854 149 0.1982 0.2330 REMARK 3 2 4.9600 - 3.9400 1.00 2686 143 0.1855 0.2641 REMARK 3 3 3.9400 - 3.4400 0.99 2624 164 0.2382 0.3013 REMARK 3 4 3.4400 - 3.1200 1.00 2658 145 0.2500 0.3002 REMARK 3 5 3.1200 - 2.9000 1.00 2638 139 0.2756 0.3372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4964 REMARK 3 ANGLE : 0.651 6725 REMARK 3 CHIRALITY : 0.045 771 REMARK 3 PLANARITY : 0.005 879 REMARK 3 DIHEDRAL : 6.999 711 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8557 5.9335 0.9844 REMARK 3 T TENSOR REMARK 3 T11: 0.3286 T22: 0.3802 REMARK 3 T33: 0.3313 T12: 0.0037 REMARK 3 T13: 0.0327 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 3.2343 L22: 3.4311 REMARK 3 L33: 3.1914 L12: -1.9858 REMARK 3 L13: 0.3083 L23: -0.8307 REMARK 3 S TENSOR REMARK 3 S11: 0.3233 S12: -0.2034 S13: -0.2707 REMARK 3 S21: -0.1888 S22: -0.0284 S23: 0.3634 REMARK 3 S31: -0.0113 S32: -0.1167 S33: -0.1687 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3430 3.8245 -19.3162 REMARK 3 T TENSOR REMARK 3 T11: 0.4958 T22: 0.4608 REMARK 3 T33: 0.2797 T12: -0.0462 REMARK 3 T13: -0.0949 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 4.9496 L22: 2.1788 REMARK 3 L33: 5.4509 L12: 1.3908 REMARK 3 L13: -2.2231 L23: 0.0287 REMARK 3 S TENSOR REMARK 3 S11: -0.4106 S12: 0.7736 S13: -0.0381 REMARK 3 S21: -0.5715 S22: 0.1599 S23: 0.2346 REMARK 3 S31: -0.1788 S32: -0.5134 S33: 0.1863 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4824 4.9500 -10.1861 REMARK 3 T TENSOR REMARK 3 T11: 0.2632 T22: 0.2989 REMARK 3 T33: 0.3972 T12: -0.0247 REMARK 3 T13: 0.0484 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.6728 L22: 1.5992 REMARK 3 L33: 4.4834 L12: 0.2941 REMARK 3 L13: -0.8650 L23: 0.2002 REMARK 3 S TENSOR REMARK 3 S11: -0.1461 S12: 0.3242 S13: -0.4125 REMARK 3 S21: -0.2959 S22: -0.0072 S23: -0.1496 REMARK 3 S31: 0.1131 S32: -0.1443 S33: 0.1548 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4496 1.3148 -10.2472 REMARK 3 T TENSOR REMARK 3 T11: 0.4824 T22: 0.7733 REMARK 3 T33: 0.6580 T12: 0.0644 REMARK 3 T13: 0.1318 T23: 0.2054 REMARK 3 L TENSOR REMARK 3 L11: 1.9196 L22: 8.0037 REMARK 3 L33: 0.4101 L12: -0.1658 REMARK 3 L13: -0.6075 L23: 1.6849 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.6335 S13: 0.2419 REMARK 3 S21: -0.6559 S22: 0.2708 S23: -0.9651 REMARK 3 S31: -0.1404 S32: -0.3462 S33: -0.5315 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5780 4.4543 -6.5494 REMARK 3 T TENSOR REMARK 3 T11: 0.4462 T22: 0.5010 REMARK 3 T33: 0.4432 T12: -0.0151 REMARK 3 T13: 0.0349 T23: 0.1139 REMARK 3 L TENSOR REMARK 3 L11: 4.0900 L22: 1.6019 REMARK 3 L33: 2.1574 L12: 1.7291 REMARK 3 L13: -0.4983 L23: 0.5301 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: -0.4239 S13: -0.5622 REMARK 3 S21: -0.4076 S22: 0.1106 S23: -0.3953 REMARK 3 S31: -0.2098 S32: 0.0287 S33: 0.0723 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4430 -9.4983 3.9139 REMARK 3 T TENSOR REMARK 3 T11: 0.3704 T22: 0.4766 REMARK 3 T33: 0.5400 T12: 0.0175 REMARK 3 T13: 0.0510 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 1.8090 L22: 3.7944 REMARK 3 L33: 2.5910 L12: -1.0937 REMARK 3 L13: 0.7421 L23: -1.9848 REMARK 3 S TENSOR REMARK 3 S11: 0.1764 S12: 0.1673 S13: -0.3652 REMARK 3 S21: -0.2825 S22: -0.1308 S23: -0.0788 REMARK 3 S31: 0.3255 S32: 0.3036 S33: 0.0009 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4518 -17.6042 0.3098 REMARK 3 T TENSOR REMARK 3 T11: 0.4617 T22: 0.3602 REMARK 3 T33: 0.5348 T12: 0.0115 REMARK 3 T13: -0.0785 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.1732 L22: 2.8867 REMARK 3 L33: 4.5790 L12: -1.6792 REMARK 3 L13: -0.1376 L23: -0.5214 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: -0.1728 S13: -0.5207 REMARK 3 S21: -0.3677 S22: -0.0115 S23: 0.1814 REMARK 3 S31: 0.2110 S32: 0.1349 S33: -0.2080 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9730 -26.4432 19.6754 REMARK 3 T TENSOR REMARK 3 T11: 0.5946 T22: 0.7778 REMARK 3 T33: 0.6137 T12: 0.1962 REMARK 3 T13: 0.0791 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 1.1700 L22: 5.7031 REMARK 3 L33: 6.3613 L12: 0.1180 REMARK 3 L13: 2.2265 L23: -0.2127 REMARK 3 S TENSOR REMARK 3 S11: -0.1011 S12: -0.2222 S13: -0.5667 REMARK 3 S21: 0.5184 S22: 0.6961 S23: 0.1711 REMARK 3 S31: 0.1128 S32: 0.4167 S33: -0.4196 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1761 -30.9027 -1.9770 REMARK 3 T TENSOR REMARK 3 T11: 0.6381 T22: 0.4715 REMARK 3 T33: 0.7747 T12: -0.0420 REMARK 3 T13: -0.2282 T23: -0.1131 REMARK 3 L TENSOR REMARK 3 L11: 3.5191 L22: 3.1958 REMARK 3 L33: 2.0800 L12: -1.1091 REMARK 3 L13: -2.3198 L23: -0.1995 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: 0.1618 S13: -0.7326 REMARK 3 S21: 0.0231 S22: -0.0635 S23: 0.3616 REMARK 3 S31: 0.2078 S32: 0.0036 S33: 0.1444 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1314 -24.4169 -8.1196 REMARK 3 T TENSOR REMARK 3 T11: 0.6264 T22: 0.4494 REMARK 3 T33: 0.4327 T12: 0.1338 REMARK 3 T13: -0.0482 T23: -0.0809 REMARK 3 L TENSOR REMARK 3 L11: 3.0675 L22: 4.5781 REMARK 3 L33: 3.2352 L12: 1.4888 REMARK 3 L13: 0.2003 L23: 0.7257 REMARK 3 S TENSOR REMARK 3 S11: 0.4624 S12: 0.0854 S13: -0.4471 REMARK 3 S21: -0.3346 S22: -0.2179 S23: -0.1476 REMARK 3 S31: 0.2857 S32: 0.3515 S33: -0.1013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZLV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1300048048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14200 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.22600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.20 REMARK 200 R MERGE FOR SHELL (I) : 1.74400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1TDJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2H4O2, 0.1 M HEPES SODIUM PH REMARK 280 7.5 AND 28% V/V PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.23650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.07950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.07950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.11825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.07950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.07950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.35475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.07950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.07950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.11825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.07950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.07950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.35475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.23650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 VAL B 235 REMARK 465 GLY B 236 REMARK 465 LEU B 237 REMARK 465 PHE B 238 REMARK 465 ALA B 239 REMARK 465 GLU B 240 REMARK 465 GLY B 241 REMARK 465 VAL B 242 REMARK 465 GLU B 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 28 -47.47 -140.04 REMARK 500 PHE A 157 -45.78 -151.01 REMARK 500 SER A 217 59.03 -115.88 REMARK 500 PRO B 24 51.68 -90.50 REMARK 500 PHE B 157 -36.17 -137.62 REMARK 500 HIS B 159 119.59 -166.30 REMARK 500 LEU B 203 -67.03 -102.83 REMARK 500 ASN B 318 89.54 -68.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 416 DISTANCE = 6.19 ANGSTROMS DBREF 8ZLV A 10 335 UNP P04968 ILVA_ECOLI 10 335 DBREF 8ZLV B 10 335 UNP P04968 ILVA_ECOLI 10 335 SEQADV 8ZLV GLN A 302 UNP P04968 LEU 302 VARIANT SEQADV 8ZLV GLN B 302 UNP P04968 LEU 302 VARIANT SEQRES 1 A 326 ALA PRO GLU GLY ALA GLU TYR LEU ARG ALA VAL LEU ARG SEQRES 2 A 326 ALA PRO VAL TYR GLU ALA ALA GLN VAL THR PRO LEU GLN SEQRES 3 A 326 LYS MET GLU LYS LEU SER SER ARG LEU ASP ASN VAL ILE SEQRES 4 A 326 LEU VAL LYS ARG GLU ASP ARG GLN PRO VAL HIS SER PHE SEQRES 5 A 326 LLP LEU ARG GLY ALA TYR ALA MET MET ALA GLY LEU THR SEQRES 6 A 326 GLU GLU GLN LYS ALA HIS GLY VAL ILE THR ALA SER ALA SEQRES 7 A 326 GLY ASN HIS ALA GLN GLY VAL ALA PHE SER SER ALA ARG SEQRES 8 A 326 LEU GLY VAL LYS ALA LEU ILE VAL MET PRO THR ALA THR SEQRES 9 A 326 ALA ASP ILE LYS VAL ASP ALA VAL ARG GLY PHE GLY GLY SEQRES 10 A 326 GLU VAL LEU LEU HIS GLY ALA ASN PHE ASP GLU ALA LYS SEQRES 11 A 326 ALA LYS ALA ILE GLU LEU SER GLN GLN GLN GLY PHE THR SEQRES 12 A 326 TRP VAL PRO PRO PHE ASP HIS PRO MET VAL ILE ALA GLY SEQRES 13 A 326 GLN GLY THR LEU ALA LEU GLU LEU LEU GLN GLN ASP ALA SEQRES 14 A 326 HIS LEU ASP ARG VAL PHE VAL PRO VAL GLY GLY GLY GLY SEQRES 15 A 326 LEU ALA ALA GLY VAL ALA VAL LEU ILE LYS GLN LEU MET SEQRES 16 A 326 PRO GLN ILE LYS VAL ILE ALA VAL GLU ALA GLU ASP SER SEQRES 17 A 326 ALA CYS LEU LYS ALA ALA LEU ASP ALA GLY HIS PRO VAL SEQRES 18 A 326 ASP LEU PRO ARG VAL GLY LEU PHE ALA GLU GLY VAL ALA SEQRES 19 A 326 VAL LYS ARG ILE GLY ASP GLU THR PHE ARG LEU CYS GLN SEQRES 20 A 326 GLU TYR LEU ASP ASP ILE ILE THR VAL ASP SER ASP ALA SEQRES 21 A 326 ILE CYS ALA ALA MET LYS ASP LEU PHE GLU ASP VAL ARG SEQRES 22 A 326 ALA VAL ALA GLU PRO SER GLY ALA LEU ALA LEU ALA GLY SEQRES 23 A 326 MET LYS LYS TYR ILE ALA GLN HIS ASN ILE ARG GLY GLU SEQRES 24 A 326 ARG LEU ALA HIS ILE LEU SER GLY ALA ASN VAL ASN PHE SEQRES 25 A 326 HIS GLY LEU ARG TYR VAL SER GLU ARG CYS GLU LEU GLY SEQRES 26 A 326 GLU SEQRES 1 B 326 ALA PRO GLU GLY ALA GLU TYR LEU ARG ALA VAL LEU ARG SEQRES 2 B 326 ALA PRO VAL TYR GLU ALA ALA GLN VAL THR PRO LEU GLN SEQRES 3 B 326 LYS MET GLU LYS LEU SER SER ARG LEU ASP ASN VAL ILE SEQRES 4 B 326 LEU VAL LYS ARG GLU ASP ARG GLN PRO VAL HIS SER PHE SEQRES 5 B 326 LLP LEU ARG GLY ALA TYR ALA MET MET ALA GLY LEU THR SEQRES 6 B 326 GLU GLU GLN LYS ALA HIS GLY VAL ILE THR ALA SER ALA SEQRES 7 B 326 GLY ASN HIS ALA GLN GLY VAL ALA PHE SER SER ALA ARG SEQRES 8 B 326 LEU GLY VAL LYS ALA LEU ILE VAL MET PRO THR ALA THR SEQRES 9 B 326 ALA ASP ILE LYS VAL ASP ALA VAL ARG GLY PHE GLY GLY SEQRES 10 B 326 GLU VAL LEU LEU HIS GLY ALA ASN PHE ASP GLU ALA LYS SEQRES 11 B 326 ALA LYS ALA ILE GLU LEU SER GLN GLN GLN GLY PHE THR SEQRES 12 B 326 TRP VAL PRO PRO PHE ASP HIS PRO MET VAL ILE ALA GLY SEQRES 13 B 326 GLN GLY THR LEU ALA LEU GLU LEU LEU GLN GLN ASP ALA SEQRES 14 B 326 HIS LEU ASP ARG VAL PHE VAL PRO VAL GLY GLY GLY GLY SEQRES 15 B 326 LEU ALA ALA GLY VAL ALA VAL LEU ILE LYS GLN LEU MET SEQRES 16 B 326 PRO GLN ILE LYS VAL ILE ALA VAL GLU ALA GLU ASP SER SEQRES 17 B 326 ALA CYS LEU LYS ALA ALA LEU ASP ALA GLY HIS PRO VAL SEQRES 18 B 326 ASP LEU PRO ARG VAL GLY LEU PHE ALA GLU GLY VAL ALA SEQRES 19 B 326 VAL LYS ARG ILE GLY ASP GLU THR PHE ARG LEU CYS GLN SEQRES 20 B 326 GLU TYR LEU ASP ASP ILE ILE THR VAL ASP SER ASP ALA SEQRES 21 B 326 ILE CYS ALA ALA MET LYS ASP LEU PHE GLU ASP VAL ARG SEQRES 22 B 326 ALA VAL ALA GLU PRO SER GLY ALA LEU ALA LEU ALA GLY SEQRES 23 B 326 MET LYS LYS TYR ILE ALA GLN HIS ASN ILE ARG GLY GLU SEQRES 24 B 326 ARG LEU ALA HIS ILE LEU SER GLY ALA ASN VAL ASN PHE SEQRES 25 B 326 HIS GLY LEU ARG TYR VAL SER GLU ARG CYS GLU LEU GLY SEQRES 26 B 326 GLU MODRES 8ZLV LLP A 62 LYS MODIFIED RESIDUE MODRES 8ZLV LLP B 62 LYS MODIFIED RESIDUE HET LLP A 62 24 HET LLP B 62 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *46(H2 O) HELIX 1 AA1 GLU A 12 ALA A 23 1 12 HELIX 2 AA2 PRO A 24 ALA A 28 5 5 HELIX 3 AA3 MET A 37 ASP A 45 1 9 HELIX 4 AA4 ASP A 54 GLN A 56 5 3 HELIX 5 AA5 LLP A 62 GLY A 72 1 11 HELIX 6 AA6 THR A 74 HIS A 80 1 7 HELIX 7 AA7 GLY A 88 GLY A 102 1 15 HELIX 8 AA8 ALA A 114 PHE A 124 1 11 HELIX 9 AA9 ASN A 134 GLY A 150 1 17 HELIX 10 AB1 HIS A 159 ASP A 177 1 19 HELIX 11 AB2 GLY A 190 MET A 204 1 15 HELIX 12 AB3 ALA A 218 GLY A 227 1 10 HELIX 13 AB4 LEU A 237 GLY A 241 5 5 HELIX 14 AB5 GLY A 248 LEU A 259 1 12 HELIX 15 AB6 ASP A 266 ARG A 282 1 17 HELIX 16 AB7 GLU A 286 ASN A 304 1 19 HELIX 17 AB8 ASN A 320 HIS A 322 5 3 HELIX 18 AB9 GLY A 323 LEU A 333 1 11 HELIX 19 AC1 GLY B 13 ALA B 23 1 11 HELIX 20 AC2 PRO B 24 ALA B 28 5 5 HELIX 21 AC3 MET B 37 ASP B 45 1 9 HELIX 22 AC4 ASP B 54 GLN B 56 5 3 HELIX 23 AC5 PHE B 61 GLY B 72 1 12 HELIX 24 AC6 THR B 74 GLY B 81 1 8 HELIX 25 AC7 GLY B 88 LEU B 101 1 14 HELIX 26 AC8 ALA B 114 PHE B 124 1 11 HELIX 27 AC9 ASN B 134 GLN B 149 1 16 HELIX 28 AD1 HIS B 159 ASP B 177 1 19 HELIX 29 AD2 GLY B 190 MET B 204 1 15 HELIX 30 AD3 ALA B 218 GLY B 227 1 10 HELIX 31 AD4 GLY B 248 LEU B 259 1 12 HELIX 32 AD5 ASP B 266 ARG B 282 1 17 HELIX 33 AD6 ALA B 290 ASN B 304 1 15 HELIX 34 AD7 ASN B 320 GLY B 323 5 4 HELIX 35 AD8 LEU B 324 GLY B 334 1 11 SHEET 1 AA1 6 LEU A 34 LYS A 36 0 SHEET 2 AA1 6 VAL A 47 ARG A 52 -1 O VAL A 50 N GLN A 35 SHEET 3 AA1 6 ARG A 309 LEU A 314 1 O HIS A 312 N LYS A 51 SHEET 4 AA1 6 ARG A 182 PRO A 186 1 N PHE A 184 O ALA A 311 SHEET 5 AA1 6 LYS A 208 ALA A 214 1 O ILE A 210 N VAL A 183 SHEET 6 AA1 6 ASP A 261 VAL A 265 1 O ILE A 263 N GLU A 213 SHEET 1 AA2 4 GLU A 127 LEU A 130 0 SHEET 2 AA2 4 ALA A 105 MET A 109 1 N ILE A 107 O GLU A 127 SHEET 3 AA2 4 VAL A 82 ALA A 85 1 N THR A 84 O VAL A 108 SHEET 4 AA2 4 THR A 152 TRP A 153 1 O THR A 152 N ILE A 83 SHEET 1 AA3 6 LEU B 34 LYS B 36 0 SHEET 2 AA3 6 VAL B 47 ARG B 52 -1 O VAL B 50 N GLN B 35 SHEET 3 AA3 6 ARG B 309 LEU B 314 1 O LEU B 314 N LYS B 51 SHEET 4 AA3 6 ARG B 182 PRO B 186 1 N PHE B 184 O ALA B 311 SHEET 5 AA3 6 LYS B 208 ALA B 214 1 O LYS B 208 N VAL B 183 SHEET 6 AA3 6 ASP B 261 VAL B 265 1 O ILE B 263 N GLU B 213 SHEET 1 AA4 4 GLU B 127 LEU B 130 0 SHEET 2 AA4 4 ALA B 105 MET B 109 1 N ILE B 107 O GLU B 127 SHEET 3 AA4 4 VAL B 82 ALA B 85 1 N THR B 84 O VAL B 108 SHEET 4 AA4 4 THR B 152 TRP B 153 1 O THR B 152 N ILE B 83 LINK C PHE A 61 N LLP A 62 1555 1555 1.34 LINK C LLP A 62 N LEU A 63 1555 1555 1.32 LINK C PHE B 61 N LLP B 62 1555 1555 1.33 LINK C LLP B 62 N LEU B 63 1555 1555 1.33 CRYST1 102.159 102.159 116.473 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009789 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008586 0.00000