data_8ZMH # _entry.id 8ZMH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ZMH pdb_00008zmh 10.2210/pdb8zmh/pdb WWPDB D_1300048108 ? ? EMDB EMD-60247 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-03-12 ? 2 'EM metadata' 1 0 2025-03-12 ? 3 'Additional map' 1 0 2025-03-12 1 4 'Half map' 1 0 2025-03-12 1 5 'Half map' 1 0 2025-03-12 2 6 Image 1 0 2025-03-12 ? 7 'Primary map' 1 0 2025-03-12 ? 8 'Structure model' 1 1 2025-07-23 ? 9 'EM metadata' 1 1 2025-07-23 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 8 'Structure model' 'Data collection' 2 9 'EM metadata' 'Data processing' 3 9 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 8 'Structure model' em_admin 2 8 'Structure model' em_software 3 9 'EM metadata' em_admin 4 9 'EM metadata' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_em_admin.last_update' 2 8 'Structure model' '_em_software.name' 3 9 'EM metadata' '_em_admin.last_update' 4 9 'EM metadata' '_em_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ZMH _pdbx_database_status.recvd_initial_deposition_date 2024-05-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of Unbound BMV TLS' _pdbx_database_related.db_id EMD-60247 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email kmzhang@ustc.edu.cn _pdbx_contact_author.name_first Kaiming _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0414-4776 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yang, W.' 1 0009-0005-9328-2792 'Li, S.' 2 0000-0002-7041-5960 'Zhang, K.' 3 0000-0003-0414-4776 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 1276 _citation.page_last 1276 _citation.title 'Structural insights into dynamics of the BMV TLS aminoacylation.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-56612-4 _citation.pdbx_database_id_PubMed 39900568 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, W.' 1 ? primary 'Yi, R.' 2 ? primary 'Yao, J.' 3 ? primary 'Gao, Y.' 4 ? primary 'Li, S.' 5 0000-0002-7041-5960 primary 'Gong, Q.' 6 0000-0002-3034-6008 primary 'Zhang, K.' 7 0000-0003-0414-4776 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'RNA (169-MER)' _entity.formula_weight 54354.141 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;CGUGGUUGACACGCAGACCUCUUACAAGAGUGUCUAGGUGCCUUUGAGAGUUACUCUUUGCUCUCUUCGGAAGAACCCUU AGGGGUUCGUGCAUGGGCUUGCAUAGCAAGUCUUAGAAUGCGGGUACCGUACAGUGUUGAAAAACACUGUAAAUCUCUAA AAGAGACCA ; _entity_poly.pdbx_seq_one_letter_code_can ;CGUGGUUGACACGCAGACCUCUUACAAGAGUGUCUAGGUGCCUUUGAGAGUUACUCUUUGCUCUCUUCGGAAGAACCCUU AGGGGUUCGUGCAUGGGCUUGCAUAGCAAGUCUUAGAAUGCGGGUACCGUACAGUGUUGAAAAACACUGUAAAUCUCUAA AAGAGACCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 U n 1 4 G n 1 5 G n 1 6 U n 1 7 U n 1 8 G n 1 9 A n 1 10 C n 1 11 A n 1 12 C n 1 13 G n 1 14 C n 1 15 A n 1 16 G n 1 17 A n 1 18 C n 1 19 C n 1 20 U n 1 21 C n 1 22 U n 1 23 U n 1 24 A n 1 25 C n 1 26 A n 1 27 A n 1 28 G n 1 29 A n 1 30 G n 1 31 U n 1 32 G n 1 33 U n 1 34 C n 1 35 U n 1 36 A n 1 37 G n 1 38 G n 1 39 U n 1 40 G n 1 41 C n 1 42 C n 1 43 U n 1 44 U n 1 45 U n 1 46 G n 1 47 A n 1 48 G n 1 49 A n 1 50 G n 1 51 U n 1 52 U n 1 53 A n 1 54 C n 1 55 U n 1 56 C n 1 57 U n 1 58 U n 1 59 U n 1 60 G n 1 61 C n 1 62 U n 1 63 C n 1 64 U n 1 65 C n 1 66 U n 1 67 U n 1 68 C n 1 69 G n 1 70 G n 1 71 A n 1 72 A n 1 73 G n 1 74 A n 1 75 A n 1 76 C n 1 77 C n 1 78 C n 1 79 U n 1 80 U n 1 81 A n 1 82 G n 1 83 G n 1 84 G n 1 85 G n 1 86 U n 1 87 U n 1 88 C n 1 89 G n 1 90 U n 1 91 G n 1 92 C n 1 93 A n 1 94 U n 1 95 G n 1 96 G n 1 97 G n 1 98 C n 1 99 U n 1 100 U n 1 101 G n 1 102 C n 1 103 A n 1 104 U n 1 105 A n 1 106 G n 1 107 C n 1 108 A n 1 109 A n 1 110 G n 1 111 U n 1 112 C n 1 113 U n 1 114 U n 1 115 A n 1 116 G n 1 117 A n 1 118 A n 1 119 U n 1 120 G n 1 121 C n 1 122 G n 1 123 G n 1 124 G n 1 125 U n 1 126 A n 1 127 C n 1 128 C n 1 129 G n 1 130 U n 1 131 A n 1 132 C n 1 133 A n 1 134 G n 1 135 U n 1 136 G n 1 137 U n 1 138 U n 1 139 G n 1 140 A n 1 141 A n 1 142 A n 1 143 A n 1 144 A n 1 145 C n 1 146 A n 1 147 C n 1 148 U n 1 149 G n 1 150 U n 1 151 A n 1 152 A n 1 153 A n 1 154 U n 1 155 C n 1 156 U n 1 157 C n 1 158 U n 1 159 A n 1 160 A n 1 161 A n 1 162 A n 1 163 G n 1 164 A n 1 165 G n 1 166 A n 1 167 C n 1 168 C n 1 169 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 169 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Brome mosaic virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12302 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-Fluc(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 C 10 10 10 C C A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 U 22 22 22 U U A . n A 1 23 U 23 23 23 U U A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 U 33 33 33 U U A . n A 1 34 C 34 34 34 C C A . n A 1 35 U 35 35 35 U U A . n A 1 36 A 36 36 36 A A A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 U 39 39 39 U U A . n A 1 40 G 40 40 40 G G A . n A 1 41 C 41 41 41 C C A . n A 1 42 C 42 42 42 C C A . n A 1 43 U 43 43 43 U U A . n A 1 44 U 44 44 44 U U A . n A 1 45 U 45 45 45 U U A . n A 1 46 G 46 46 46 G G A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 U 51 51 51 U U A . n A 1 52 U 52 52 52 U U A . n A 1 53 A 53 53 53 A A A . n A 1 54 C 54 54 54 C C A . n A 1 55 U 55 55 55 U U A . n A 1 56 C 56 56 56 C C A . n A 1 57 U 57 57 57 U U A . n A 1 58 U 58 58 58 U U A . n A 1 59 U 59 59 59 U U A . n A 1 60 G 60 60 60 G G A . n A 1 61 C 61 61 61 C C A . n A 1 62 U 62 62 62 U U A . n A 1 63 C 63 63 63 C C A . n A 1 64 U 64 64 64 U U A . n A 1 65 C 65 65 65 C C A . n A 1 66 U 66 66 66 U U A . n A 1 67 U 67 67 67 U U A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 G 70 70 70 G G A . n A 1 71 A 71 71 71 A A A . n A 1 72 A 72 72 72 A A A . n A 1 73 G 73 73 73 G G A . n A 1 74 A 74 74 74 A A A . n A 1 75 A 75 75 75 A A A . n A 1 76 C 76 76 76 C C A . n A 1 77 C 77 77 77 C C A . n A 1 78 C 78 78 78 C C A . n A 1 79 U 79 79 79 U U A . n A 1 80 U 80 80 80 U U A . n A 1 81 A 81 81 81 A A A . n A 1 82 G 82 82 82 G G A . n A 1 83 G 83 83 83 G G A . n A 1 84 G 84 84 84 G G A . n A 1 85 G 85 85 85 G G A . n A 1 86 U 86 86 86 U U A . n A 1 87 U 87 87 87 U U A . n A 1 88 C 88 88 88 C C A . n A 1 89 G 89 89 89 G G A . n A 1 90 U 90 90 90 U U A . n A 1 91 G 91 91 91 G G A . n A 1 92 C 92 92 92 C C A . n A 1 93 A 93 93 93 A A A . n A 1 94 U 94 94 94 U U A . n A 1 95 G 95 95 95 G G A . n A 1 96 G 96 96 96 G G A . n A 1 97 G 97 97 97 G G A . n A 1 98 C 98 98 98 C C A . n A 1 99 U 99 99 99 U U A . n A 1 100 U 100 100 100 U U A . n A 1 101 G 101 101 101 G G A . n A 1 102 C 102 102 102 C C A . n A 1 103 A 103 103 103 A A A . n A 1 104 U 104 104 104 U U A . n A 1 105 A 105 105 105 A A A . n A 1 106 G 106 106 106 G G A . n A 1 107 C 107 107 107 C C A . n A 1 108 A 108 108 108 A A A . n A 1 109 A 109 109 109 A A A . n A 1 110 G 110 110 110 G G A . n A 1 111 U 111 111 111 U U A . n A 1 112 C 112 112 112 C C A . n A 1 113 U 113 113 113 U U A . n A 1 114 U 114 114 114 U U A . n A 1 115 A 115 115 115 A A A . n A 1 116 G 116 116 116 G G A . n A 1 117 A 117 117 117 A A A . n A 1 118 A 118 118 118 A A A . n A 1 119 U 119 119 119 U U A . n A 1 120 G 120 120 120 G G A . n A 1 121 C 121 121 121 C C A . n A 1 122 G 122 122 122 G G A . n A 1 123 G 123 123 123 G G A . n A 1 124 G 124 124 124 G G A . n A 1 125 U 125 125 125 U U A . n A 1 126 A 126 126 126 A A A . n A 1 127 C 127 127 127 C C A . n A 1 128 C 128 128 128 C C A . n A 1 129 G 129 129 129 G G A . n A 1 130 U 130 130 130 U U A . n A 1 131 A 131 131 131 A A A . n A 1 132 C 132 132 132 C C A . n A 1 133 A 133 133 133 A A A . n A 1 134 G 134 134 134 G G A . n A 1 135 U 135 135 135 U U A . n A 1 136 G 136 136 136 G G A . n A 1 137 U 137 137 137 U U A . n A 1 138 U 138 138 138 U U A . n A 1 139 G 139 139 139 G G A . n A 1 140 A 140 140 140 A A A . n A 1 141 A 141 141 141 A A A . n A 1 142 A 142 142 142 A A A . n A 1 143 A 143 143 143 A A A . n A 1 144 A 144 144 144 A A A . n A 1 145 C 145 145 145 C C A . n A 1 146 A 146 146 146 A A A . n A 1 147 C 147 147 147 C C A . n A 1 148 U 148 148 148 U U A . n A 1 149 G 149 149 149 G G A . n A 1 150 U 150 150 150 U U A . n A 1 151 A 151 151 151 A A A . n A 1 152 A 152 152 152 A A A . n A 1 153 A 153 153 153 A A A . n A 1 154 U 154 154 154 U U A . n A 1 155 C 155 155 155 C C A . n A 1 156 U 156 156 156 U U A . n A 1 157 C 157 157 157 C C A . n A 1 158 U 158 158 158 U U A . n A 1 159 A 159 159 159 A A A . n A 1 160 A 160 160 160 A A A . n A 1 161 A 161 161 161 A A A . n A 1 162 A 162 162 162 A A A . n A 1 163 G 163 163 163 G G A . n A 1 164 A 164 164 164 A A A . n A 1 165 G 165 165 165 G G A . n A 1 166 A 166 166 166 A A A . n A 1 167 C 167 167 167 C C A . n A 1 168 C 168 168 168 C C A . n A 1 169 A 169 169 169 A A A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ZMH _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8ZMH _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.010 ? 4018 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.674 ? 6259 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 21.609 ? 2024 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.075 ? 844 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.010 ? 169 ? f_plane_restr ? ? # _struct.entry_id 8ZMH _struct.title 'Cryo-EM structure of Unbound BMV TLS' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ZMH _struct_keywords.text 'Brome Mosaic Virus, tRNA-like structure, aminoacylation, tyrosyl-tRNA synthetase, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code X58457.1 _struct_ref.pdbx_db_accession 556693 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;CGUGGUUGACACGCAGACCUCUUACAAGAGUGUCUAGGUGCCUUUGAGAGUUACUCUUUGCUCUCUUCGGAAGAACCCUU AGGGGUUCGUGCAUGGGCUUGCAUAGCAAGUCUUAGAAUGCGGGUACCGUACAGUGUUGAAAAACACUGUAAAUCUCUAA AAGAGACCA ; _struct_ref.pdbx_align_begin 2699 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8ZMH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 169 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 556693 _struct_ref_seq.db_align_beg 2699 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2867 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 169 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 1 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 1 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 1 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 12 N3 ? ? A G 2 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 12 O2 ? ? A G 2 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 12 N4 ? ? A G 2 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 11 N1 ? ? A U 3 A A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 11 N6 ? ? A U 3 A A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 3 N3 ? ? ? 1_555 A C 12 N3 ? ? A U 3 A C 12 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog10 hydrog ? ? A U 3 O4 ? ? ? 1_555 A C 12 N4 ? ? A U 3 A C 12 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 10 N3 ? ? A G 4 A C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 10 O2 ? ? A G 4 A C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 10 N4 ? ? A G 4 A C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 4 N7 ? ? ? 1_555 A A 153 N6 ? ? A G 4 A A 153 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog15 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 9 N7 ? ? A G 5 A A 9 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? A G 5 N3 ? ? ? 1_555 A A 9 N6 ? ? A G 5 A A 9 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A G 5 N1 ? ? ? 1_555 A U 154 O4 ? ? A G 5 A U 154 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog18 hydrog ? ? A G 5 O6 ? ? ? 1_555 A U 154 N3 ? ? A G 5 A U 154 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog19 hydrog ? ? A C 10 N4 ? ? ? 1_555 A A 153 N7 ? ? A C 10 A A 153 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 16 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 16 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 16 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 33 N3 ? ? A A 17 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 33 O4 ? ? A A 17 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 18 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 18 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 18 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 19 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 19 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 19 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 29 N1 ? ? A U 20 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 20 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 20 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 21 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 21 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 21 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 27 N1 ? ? A U 22 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 27 N6 ? ? A U 22 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 36 N1 ? ? ? 1_555 A G 129 N1 ? ? A A 36 A G 129 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? A A 36 N6 ? ? ? 1_555 A G 129 O6 ? ? A A 36 A G 129 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog40 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 128 N3 ? ? A G 37 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 128 O2 ? ? A G 37 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 128 N4 ? ? A G 37 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 127 N3 ? ? A G 38 A C 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 127 O2 ? ? A G 38 A C 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 127 N4 ? ? A G 38 A C 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 39 N3 ? ? ? 1_555 A A 126 N1 ? ? A U 39 A A 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 39 O4 ? ? ? 1_555 A A 126 N6 ? ? A U 39 A A 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 40 N1 ? ? ? 1_555 A U 125 O2 ? ? A G 40 A U 125 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? A G 40 O6 ? ? ? 1_555 A U 125 N3 ? ? A G 40 A U 125 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? A C 41 N3 ? ? ? 1_555 A G 124 N1 ? ? A C 41 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 41 N4 ? ? ? 1_555 A G 124 O6 ? ? A C 41 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 41 O2 ? ? ? 1_555 A G 124 N2 ? ? A C 41 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 123 N1 ? ? A C 42 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 123 O6 ? ? A C 42 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 123 N2 ? ? A C 42 A G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 124 N1 ? ? A C 42 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 124 O6 ? ? A C 42 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 124 N2 ? ? A C 42 A G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 43 O2 ? ? ? 1_555 A G 123 N2 ? ? A U 43 A G 123 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog60 hydrog ? ? A U 44 O2 ? ? ? 1_555 A C 92 N4 ? ? A U 44 A C 92 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog61 hydrog ? ? A U 44 N3 ? ? ? 1_555 A A 117 N7 ? ? A U 44 A A 117 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog62 hydrog ? ? A U 44 O2 ? ? ? 1_555 A A 117 N6 ? ? A U 44 A A 117 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog63 hydrog ? ? A G 46 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 46 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 46 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 46 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 46 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 46 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 47 N1 ? ? ? 1_555 A U 64 N3 ? ? A A 47 A U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 47 N6 ? ? ? 1_555 A U 64 O4 ? ? A A 47 A U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 48 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 48 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 48 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 48 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 62 N3 ? ? A A 49 A U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 62 O4 ? ? A A 49 A U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 50 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 50 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 50 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 51 N3 ? ? ? 1_555 A G 60 O6 ? ? A U 51 A G 60 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog77 hydrog ? ? A U 51 O2 ? ? ? 1_555 A G 60 N1 ? ? A U 51 A G 60 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog78 hydrog ? ? A U 51 N3 ? ? ? 1_555 A C 61 N3 ? ? A U 51 A C 61 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog79 hydrog ? ? A U 51 O4 ? ? ? 1_555 A C 61 N4 ? ? A U 51 A C 61 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog80 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 165 N1 ? ? A C 54 A G 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 165 O6 ? ? A C 54 A G 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 165 N2 ? ? A C 54 A G 165 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A U 55 N3 ? ? ? 1_555 A A 164 N1 ? ? A U 55 A A 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A U 55 O4 ? ? ? 1_555 A A 164 N6 ? ? A U 55 A A 164 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 163 N1 ? ? A C 56 A G 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 163 O6 ? ? A C 56 A G 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 163 N2 ? ? A C 56 A G 163 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A U 57 N3 ? ? ? 1_555 A A 162 N1 ? ? A U 57 A A 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A U 57 O4 ? ? ? 1_555 A A 162 N6 ? ? A U 57 A A 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A U 58 N3 ? ? ? 1_555 A A 162 N1 ? ? A U 58 A A 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A U 58 O4 ? ? ? 1_555 A A 162 N6 ? ? A U 58 A A 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 60 N2 ? ? ? 1_555 A U 156 O4 ? ? A G 60 A U 156 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog93 hydrog ? ? A C 68 N4 ? ? ? 1_555 A A 115 N7 ? ? A C 68 A A 115 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog94 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 73 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 73 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 73 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A A 74 N1 ? ? ? 1_555 A U 87 N3 ? ? A A 74 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A A 74 N6 ? ? ? 1_555 A U 87 O4 ? ? A A 74 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A A 75 N1 ? ? ? 1_555 A U 86 N3 ? ? A A 75 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A A 75 N6 ? ? ? 1_555 A U 86 O4 ? ? A A 75 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 76 N3 ? ? ? 1_555 A G 85 N1 ? ? A C 76 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 76 N4 ? ? ? 1_555 A G 85 O6 ? ? A C 76 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 76 O2 ? ? ? 1_555 A G 85 N2 ? ? A C 76 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 77 N3 ? ? ? 1_555 A G 84 N1 ? ? A C 77 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A C 77 N4 ? ? ? 1_555 A G 84 O6 ? ? A C 77 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A C 77 O2 ? ? ? 1_555 A G 84 N2 ? ? A C 77 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A C 77 N3 ? ? ? 1_555 A G 85 N1 ? ? A C 77 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A C 77 N4 ? ? ? 1_555 A G 85 O6 ? ? A C 77 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A C 77 O2 ? ? ? 1_555 A G 85 N2 ? ? A C 77 A G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 78 N3 ? ? ? 1_555 A G 83 N1 ? ? A C 78 A G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A C 78 N4 ? ? ? 1_555 A G 83 O6 ? ? A C 78 A G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 78 O2 ? ? ? 1_555 A G 83 N2 ? ? A C 78 A G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 78 N3 ? ? ? 1_555 A G 84 N1 ? ? A C 78 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A C 78 N4 ? ? ? 1_555 A G 84 O6 ? ? A C 78 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A C 78 O2 ? ? ? 1_555 A G 84 N2 ? ? A C 78 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A U 79 O4 ? ? ? 1_555 A G 83 N1 ? ? A U 79 A G 83 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog117 hydrog ? ? A G 91 N7 ? ? ? 1_555 A A 117 N6 ? ? A G 91 A A 117 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog118 hydrog ? ? A G 91 N1 ? ? ? 1_555 A C 121 N3 ? ? A G 91 A C 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? A G 91 N2 ? ? ? 1_555 A C 121 O2 ? ? A G 91 A C 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? A G 91 O6 ? ? ? 1_555 A C 121 N4 ? ? A G 91 A C 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A C 92 N4 ? ? ? 1_555 A A 117 N1 ? ? A C 92 A A 117 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog122 hydrog ? ? A C 92 N3 ? ? ? 1_555 A G 120 N1 ? ? A C 92 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A C 92 N4 ? ? ? 1_555 A G 120 O6 ? ? A C 92 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A C 92 O2 ? ? ? 1_555 A G 120 N2 ? ? A C 92 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A A 93 N1 ? ? ? 1_555 A U 119 N3 ? ? A A 93 A U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? A A 93 N6 ? ? ? 1_555 A U 119 O4 ? ? A A 93 A U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? A U 94 N3 ? ? ? 1_555 A A 118 N1 ? ? A U 94 A A 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? A U 94 O4 ? ? ? 1_555 A A 118 N6 ? ? A U 94 A A 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? A U 94 N3 ? ? ? 1_555 A U 119 O4 ? ? A U 94 A U 119 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog130 hydrog ? ? A U 94 O2 ? ? ? 1_555 A U 119 N3 ? ? A U 94 A U 119 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog131 hydrog ? ? A G 95 N1 ? ? ? 1_555 A U 113 O2 ? ? A G 95 A U 113 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog132 hydrog ? ? A G 95 O6 ? ? ? 1_555 A U 113 N3 ? ? A G 95 A U 113 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog133 hydrog ? ? A G 96 N1 ? ? ? 1_555 A C 112 N3 ? ? A G 96 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? A G 96 N2 ? ? ? 1_555 A C 112 O2 ? ? A G 96 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? A G 96 O6 ? ? ? 1_555 A C 112 N4 ? ? A G 96 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? A G 97 N1 ? ? ? 1_555 A U 111 O4 ? ? A G 97 A U 111 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog137 hydrog ? ? A G 97 O6 ? ? ? 1_555 A U 111 N3 ? ? A G 97 A U 111 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog138 hydrog ? ? A G 97 N1 ? ? ? 1_555 A C 112 N3 ? ? A G 97 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? A G 97 N2 ? ? ? 1_555 A C 112 O2 ? ? A G 97 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? A G 97 O6 ? ? ? 1_555 A C 112 N4 ? ? A G 97 A C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? A C 98 N3 ? ? ? 1_555 A G 110 N1 ? ? A C 98 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? A C 98 N4 ? ? ? 1_555 A G 110 O6 ? ? A C 98 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? A C 98 O2 ? ? ? 1_555 A G 110 N2 ? ? A C 98 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? A C 98 N3 ? ? ? 1_555 A U 111 N3 ? ? A C 98 A U 111 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog145 hydrog ? ? A C 98 N4 ? ? ? 1_555 A U 111 O4 ? ? A C 98 A U 111 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog146 hydrog ? ? A U 99 N3 ? ? ? 1_555 A A 109 N1 ? ? A U 99 A A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? A U 99 O4 ? ? ? 1_555 A A 109 N6 ? ? A U 99 A A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? A U 100 N3 ? ? ? 1_555 A A 108 N1 ? ? A U 100 A A 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? A U 100 O4 ? ? ? 1_555 A A 108 N6 ? ? A U 100 A A 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? A G 101 N1 ? ? ? 1_555 A C 107 N3 ? ? A G 101 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? A G 101 N2 ? ? ? 1_555 A C 107 O2 ? ? A G 101 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? A G 101 O6 ? ? ? 1_555 A C 107 N4 ? ? A G 101 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? A C 102 O2 ? ? ? 1_555 A C 107 N4 ? ? A C 102 A C 107 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog154 hydrog ? ? A U 130 N3 ? ? ? 1_555 A A 151 N1 ? ? A U 130 A A 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? A U 130 O4 ? ? ? 1_555 A A 151 N6 ? ? A U 130 A A 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? A A 131 N1 ? ? ? 1_555 A U 150 N3 ? ? A A 131 A U 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? A A 131 N6 ? ? ? 1_555 A U 150 O4 ? ? A A 131 A U 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? A C 132 N3 ? ? ? 1_555 A G 149 N1 ? ? A C 132 A G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? A C 132 N4 ? ? ? 1_555 A G 149 O6 ? ? A C 132 A G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog160 hydrog ? ? A C 132 O2 ? ? ? 1_555 A G 149 N2 ? ? A C 132 A G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog161 hydrog ? ? A A 133 N1 ? ? ? 1_555 A U 148 N3 ? ? A A 133 A U 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog162 hydrog ? ? A A 133 N6 ? ? ? 1_555 A U 148 O4 ? ? A A 133 A U 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog163 hydrog ? ? A G 134 N1 ? ? ? 1_555 A C 147 N3 ? ? A G 134 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog164 hydrog ? ? A G 134 N2 ? ? ? 1_555 A C 147 O2 ? ? A G 134 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog165 hydrog ? ? A G 134 O6 ? ? ? 1_555 A C 147 N4 ? ? A G 134 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog166 hydrog ? ? A U 135 N3 ? ? ? 1_555 A A 146 N1 ? ? A U 135 A A 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog167 hydrog ? ? A U 135 O4 ? ? ? 1_555 A A 146 N6 ? ? A U 135 A A 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog168 hydrog ? ? A G 136 N1 ? ? ? 1_555 A C 145 N3 ? ? A G 136 A C 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog169 hydrog ? ? A G 136 N2 ? ? ? 1_555 A C 145 O2 ? ? A G 136 A C 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog170 hydrog ? ? A G 136 O6 ? ? ? 1_555 A C 145 N4 ? ? A G 136 A C 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog171 hydrog ? ? A U 137 N3 ? ? ? 1_555 A A 144 N1 ? ? A U 137 A A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog172 hydrog ? ? A U 137 O4 ? ? ? 1_555 A A 144 N6 ? ? A U 137 A A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog173 hydrog ? ? A U 138 N3 ? ? ? 1_555 A A 143 N1 ? ? A U 138 A A 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog174 hydrog ? ? A U 138 O4 ? ? ? 1_555 A A 143 N6 ? ? A U 138 A A 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog175 hydrog ? ? A U 138 N3 ? ? ? 1_555 A A 144 N1 ? ? A U 138 A A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog176 hydrog ? ? A U 138 O4 ? ? ? 1_555 A A 144 N6 ? ? A U 138 A A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog177 hydrog ? ? A G 139 N3 ? ? ? 1_555 A A 142 N6 ? ? A G 139 A A 142 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 8ZMH _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N2 A G 139 ? ? C8 A A 142 ? ? 1.59 2 1 N2 A G 139 ? ? N7 A A 142 ? ? 1.81 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 A C 21 ? ? C4 A C 21 ? ? 1.290 1.335 -0.045 0.007 N 2 1 C2 A U 22 ? ? N3 A U 22 ? ? 1.328 1.373 -0.045 0.007 N 3 1 C5 A G 28 ? ? C6 A G 28 ? ? 1.354 1.419 -0.065 0.010 N 4 1 C5 A G 28 ? ? N7 A G 28 ? ? 1.350 1.388 -0.038 0.006 N 5 1 C6 A G 30 ? ? N1 A G 30 ? ? 1.340 1.391 -0.051 0.007 N 6 1 C4 A C 34 ? ? C5 A C 34 ? ? 1.374 1.425 -0.051 0.008 N 7 1 C5 A G 96 ? ? N7 A G 96 ? ? 1.327 1.388 -0.061 0.006 N 8 1 N7 A G 96 ? ? C8 A G 96 ? ? 1.246 1.305 -0.059 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A C 1 ? ? N1 A C 1 ? ? C2 A C 1 ? ? 117.76 120.30 -2.54 0.40 N 2 1 N1 A C 1 ? ? C2 A C 1 ? ? O2 A C 1 ? ? 122.57 118.90 3.67 0.60 N 3 1 C2 A C 1 ? ? N1 A C 1 ? ? "C1'" A C 1 ? ? 125.72 118.80 6.92 1.10 N 4 1 N1 A U 6 ? ? C2 A U 6 ? ? O2 A U 6 ? ? 127.99 122.80 5.19 0.70 N 5 1 N3 A U 6 ? ? C2 A U 6 ? ? O2 A U 6 ? ? 117.76 122.20 -4.44 0.70 N 6 1 C6 A C 10 ? ? N1 A C 10 ? ? C2 A C 10 ? ? 116.98 120.30 -3.32 0.40 N 7 1 N1 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 122.81 118.90 3.91 0.60 N 8 1 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 117.50 121.90 -4.40 0.70 N 9 1 C2 A C 10 ? ? N1 A C 10 ? ? "C1'" A C 10 ? ? 127.36 118.80 8.56 1.10 N 10 1 C5 A A 11 ? ? C6 A A 11 ? ? N6 A A 11 ? ? 118.39 123.70 -5.31 0.80 N 11 1 C6 A C 12 ? ? N1 A C 12 ? ? C2 A C 12 ? ? 116.91 120.30 -3.39 0.40 N 12 1 C5 A C 12 ? ? C6 A C 12 ? ? N1 A C 12 ? ? 125.52 121.00 4.52 0.50 N 13 1 N1 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 125.45 118.90 6.55 0.60 N 14 1 N3 A C 12 ? ? C2 A C 12 ? ? O2 A C 12 ? ? 116.90 121.90 -5.00 0.70 N 15 1 N3 A C 12 ? ? C4 A C 12 ? ? N4 A C 12 ? ? 122.66 118.00 4.66 0.70 N 16 1 C6 A C 12 ? ? N1 A C 12 ? ? "C1'" A C 12 ? ? 112.19 120.80 -8.61 1.20 N 17 1 C2 A C 12 ? ? N1 A C 12 ? ? "C1'" A C 12 ? ? 130.89 118.80 12.09 1.10 N 18 1 C4 A G 16 ? ? C5 A G 16 ? ? N7 A G 16 ? ? 115.60 110.80 4.80 0.40 N 19 1 C5 A G 16 ? ? N7 A G 16 ? ? C8 A G 16 ? ? 100.80 104.30 -3.50 0.50 N 20 1 N9 A G 16 ? ? C4 A G 16 ? ? C5 A G 16 ? ? 101.39 105.40 -4.01 0.40 N 21 1 N3 A G 16 ? ? C4 A G 16 ? ? N9 A G 16 ? ? 131.32 126.00 5.32 0.60 N 22 1 C6 A G 16 ? ? C5 A G 16 ? ? N7 A G 16 ? ? 123.69 130.40 -6.71 0.60 N 23 1 N3 A G 16 ? ? C2 A G 16 ? ? N2 A G 16 ? ? 126.33 119.90 6.43 0.70 N 24 1 N1 A G 16 ? ? C6 A G 16 ? ? O6 A G 16 ? ? 123.79 119.90 3.89 0.60 N 25 1 C4 A A 17 ? ? C5 A A 17 ? ? N7 A A 17 ? ? 113.92 110.70 3.22 0.50 N 26 1 C5 A A 17 ? ? N7 A A 17 ? ? C8 A A 17 ? ? 100.62 103.90 -3.28 0.50 N 27 1 N9 A A 17 ? ? C4 A A 17 ? ? C5 A A 17 ? ? 103.29 105.80 -2.51 0.40 N 28 1 N1 A A 17 ? ? C6 A A 17 ? ? N6 A A 17 ? ? 123.05 118.60 4.45 0.60 N 29 1 C6 A C 18 ? ? N1 A C 18 ? ? C2 A C 18 ? ? 117.39 120.30 -2.91 0.40 N 30 1 N1 A C 18 ? ? C2 A C 18 ? ? O2 A C 18 ? ? 123.28 118.90 4.38 0.60 N 31 1 C2 A C 18 ? ? N1 A C 18 ? ? "C1'" A C 18 ? ? 125.62 118.80 6.82 1.10 N 32 1 N3 A C 19 ? ? C4 A C 19 ? ? C5 A C 19 ? ? 124.43 121.90 2.53 0.40 N 33 1 N1 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 124.14 118.90 5.24 0.60 N 34 1 C6 A C 19 ? ? N1 A C 19 ? ? "C1'" A C 19 ? ? 111.59 120.80 -9.21 1.20 N 35 1 C2 A C 19 ? ? N1 A C 19 ? ? "C1'" A C 19 ? ? 128.80 118.80 10.00 1.10 N 36 1 C6 A C 21 ? ? N1 A C 21 ? ? C2 A C 21 ? ? 116.39 120.30 -3.91 0.40 N 37 1 N1 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 124.79 118.90 5.89 0.60 N 38 1 N3 A C 21 ? ? C2 A C 21 ? ? O2 A C 21 ? ? 115.35 121.90 -6.55 0.70 N 39 1 C6 A C 21 ? ? N1 A C 21 ? ? "C1'" A C 21 ? ? 113.10 120.80 -7.70 1.20 N 40 1 C2 A C 21 ? ? N1 A C 21 ? ? "C1'" A C 21 ? ? 130.38 118.80 11.58 1.10 N 41 1 C2 A A 27 ? ? N3 A A 27 ? ? C4 A A 27 ? ? 113.73 110.60 3.13 0.50 N 42 1 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 120.91 117.70 3.21 0.50 N 43 1 C4 A G 28 ? ? C5 A G 28 ? ? N7 A G 28 ? ? 113.24 110.80 2.44 0.40 N 44 1 C8 A G 28 ? ? N9 A G 28 ? ? C4 A G 28 ? ? 102.80 106.40 -3.60 0.40 N 45 1 "O4'" A A 29 ? ? "C1'" A A 29 ? ? N9 A A 29 ? ? 113.50 108.50 5.00 0.70 N 46 1 C6 A A 29 ? ? N1 A A 29 ? ? C2 A A 29 ? ? 114.89 118.60 -3.71 0.60 N 47 1 C8 A A 29 ? ? N9 A A 29 ? ? C4 A A 29 ? ? 102.48 105.80 -3.32 0.40 N 48 1 N1 A A 29 ? ? C6 A A 29 ? ? N6 A A 29 ? ? 114.73 118.60 -3.87 0.60 N 49 1 N3 A G 30 ? ? C4 A G 30 ? ? C5 A G 30 ? ? 122.95 128.60 -5.65 0.50 N 50 1 C5 A G 30 ? ? C6 A G 30 ? ? N1 A G 30 ? ? 115.68 111.50 4.18 0.50 N 51 1 C4 A G 30 ? ? C5 A G 30 ? ? N7 A G 30 ? ? 114.69 110.80 3.89 0.40 N 52 1 N9 A G 30 ? ? C4 A G 30 ? ? C5 A G 30 ? ? 102.60 105.40 -2.80 0.40 N 53 1 N3 A G 30 ? ? C4 A G 30 ? ? N9 A G 30 ? ? 134.45 126.00 8.45 0.60 N 54 1 C6 A G 30 ? ? C5 A G 30 ? ? N7 A G 30 ? ? 123.95 130.40 -6.45 0.60 N 55 1 N1 A G 30 ? ? C2 A G 30 ? ? N2 A G 30 ? ? 110.41 116.20 -5.79 0.90 N 56 1 N3 A G 30 ? ? C2 A G 30 ? ? N2 A G 30 ? ? 125.72 119.90 5.82 0.70 N 57 1 C5 A G 30 ? ? C6 A G 30 ? ? O6 A G 30 ? ? 122.60 128.60 -6.00 0.60 N 58 1 C4 A G 30 ? ? N9 A G 30 ? ? "C1'" A G 30 ? ? 135.32 126.50 8.82 1.30 N 59 1 N3 A U 31 ? ? C2 A U 31 ? ? O2 A U 31 ? ? 116.97 122.20 -5.23 0.70 N 60 1 C5 A G 32 ? ? C6 A G 32 ? ? N1 A G 32 ? ? 114.78 111.50 3.28 0.50 N 61 1 N1 A G 32 ? ? C6 A G 32 ? ? O6 A G 32 ? ? 114.77 119.90 -5.13 0.60 N 62 1 N1 A U 33 ? ? C2 A U 33 ? ? O2 A U 33 ? ? 128.55 122.80 5.75 0.70 N 63 1 N3 A U 33 ? ? C2 A U 33 ? ? O2 A U 33 ? ? 117.01 122.20 -5.19 0.70 N 64 1 C6 A C 34 ? ? N1 A C 34 ? ? C2 A C 34 ? ? 117.65 120.30 -2.65 0.40 N 65 1 C5 A C 34 ? ? C6 A C 34 ? ? N1 A C 34 ? ? 125.15 121.00 4.15 0.50 N 66 1 N1 A C 34 ? ? C2 A C 34 ? ? O2 A C 34 ? ? 129.93 118.90 11.03 0.60 N 67 1 N3 A C 34 ? ? C2 A C 34 ? ? O2 A C 34 ? ? 114.01 121.90 -7.89 0.70 N 68 1 N3 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 123.27 118.00 5.27 0.70 N 69 1 C5 A C 34 ? ? C4 A C 34 ? ? N4 A C 34 ? ? 114.99 120.20 -5.21 0.70 N 70 1 C6 A C 34 ? ? N1 A C 34 ? ? "C1'" A C 34 ? ? 110.62 120.80 -10.18 1.20 N 71 1 C2 A C 34 ? ? N1 A C 34 ? ? "C1'" A C 34 ? ? 131.73 118.80 12.93 1.10 N 72 1 C2 A U 35 ? ? N3 A U 35 ? ? C4 A U 35 ? ? 123.06 127.00 -3.94 0.60 N 73 1 C6 A C 42 ? ? N1 A C 42 ? ? C2 A C 42 ? ? 117.68 120.30 -2.62 0.40 N 74 1 N3 A C 42 ? ? C2 A C 42 ? ? O2 A C 42 ? ? 115.87 121.90 -6.03 0.70 N 75 1 C5 A G 46 ? ? C6 A G 46 ? ? O6 A G 46 ? ? 132.52 128.60 3.92 0.60 N 76 1 C5 A A 49 ? ? N7 A A 49 ? ? C8 A A 49 ? ? 100.69 103.90 -3.21 0.50 N 77 1 N7 A A 49 ? ? C8 A A 49 ? ? N9 A A 49 ? ? 117.68 113.80 3.88 0.50 N 78 1 C8 A A 49 ? ? N9 A A 49 ? ? C4 A A 49 ? ? 103.37 105.80 -2.43 0.40 N 79 1 "O4'" A G 50 ? ? "C1'" A G 50 ? ? N9 A G 50 ? ? 113.98 108.50 5.48 0.70 N 80 1 C4 A G 50 ? ? N9 A G 50 ? ? "C1'" A G 50 ? ? 118.17 126.50 -8.33 1.30 N 81 1 "O4'" A U 51 ? ? "C1'" A U 51 ? ? N1 A U 51 ? ? 112.93 108.50 4.43 0.70 N 82 1 C5 A U 51 ? ? C6 A U 51 ? ? N1 A U 51 ? ? 118.65 122.70 -4.05 0.50 N 83 1 C6 A C 54 ? ? N1 A C 54 ? ? C2 A C 54 ? ? 117.85 120.30 -2.45 0.40 N 84 1 C5 A U 55 ? ? C6 A U 55 ? ? N1 A U 55 ? ? 119.43 122.70 -3.27 0.50 N 85 1 C6 A C 65 ? ? N1 A C 65 ? ? C2 A C 65 ? ? 116.89 120.30 -3.41 0.40 N 86 1 C2 A C 65 ? ? N3 A C 65 ? ? C4 A C 65 ? ? 123.11 119.90 3.21 0.50 N 87 1 C5 A C 65 ? ? C6 A C 65 ? ? N1 A C 65 ? ? 124.05 121.00 3.05 0.50 N 88 1 N1 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 125.10 118.90 6.20 0.60 N 89 1 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 115.80 121.90 -6.10 0.70 N 90 1 N3 A G 70 ? ? C4 A G 70 ? ? N9 A G 70 ? ? 130.08 126.00 4.08 0.60 N 91 1 C8 A G 70 ? ? N9 A G 70 ? ? "C1'" A G 70 ? ? 118.45 127.00 -8.55 1.30 N 92 1 C4 A G 70 ? ? N9 A G 70 ? ? "C1'" A G 70 ? ? 134.52 126.50 8.02 1.30 N 93 1 N9 A G 82 ? ? C4 A G 82 ? ? C5 A G 82 ? ? 108.69 105.40 3.29 0.40 N 94 1 N3 A G 82 ? ? C4 A G 82 ? ? N9 A G 82 ? ? 120.72 126.00 -5.28 0.60 N 95 1 C6 A G 82 ? ? C5 A G 82 ? ? N7 A G 82 ? ? 135.51 130.40 5.11 0.60 N 96 1 N1 A G 82 ? ? C6 A G 82 ? ? O6 A G 82 ? ? 114.23 119.90 -5.67 0.60 N 97 1 C5 A G 82 ? ? C6 A G 82 ? ? O6 A G 82 ? ? 132.63 128.60 4.03 0.60 N 98 1 C8 A G 82 ? ? N9 A G 82 ? ? "C1'" A G 82 ? ? 138.34 127.00 11.34 1.30 N 99 1 C4 A G 82 ? ? N9 A G 82 ? ? "C1'" A G 82 ? ? 116.15 126.50 -10.35 1.30 N 100 1 C4 A G 84 ? ? C5 A G 84 ? ? N7 A G 84 ? ? 113.24 110.80 2.44 0.40 N 101 1 C5 A G 84 ? ? N7 A G 84 ? ? C8 A G 84 ? ? 100.82 104.30 -3.48 0.50 N 102 1 N7 A G 84 ? ? C8 A G 84 ? ? N9 A G 84 ? ? 117.58 113.10 4.48 0.50 N 103 1 C6 A G 84 ? ? C5 A G 84 ? ? N7 A G 84 ? ? 126.07 130.40 -4.33 0.60 N 104 1 C6 A C 88 ? ? N1 A C 88 ? ? C2 A C 88 ? ? 117.81 120.30 -2.49 0.40 N 105 1 C5 A C 88 ? ? C6 A C 88 ? ? N1 A C 88 ? ? 124.69 121.00 3.69 0.50 N 106 1 N3 A G 96 ? ? C4 A G 96 ? ? C5 A G 96 ? ? 125.02 128.60 -3.58 0.50 N 107 1 C4 A G 96 ? ? C5 A G 96 ? ? C6 A G 96 ? ? 124.65 118.80 5.85 0.60 N 108 1 C4 A G 96 ? ? C5 A G 96 ? ? N7 A G 96 ? ? 115.06 110.80 4.26 0.40 N 109 1 C5 A G 96 ? ? N7 A G 96 ? ? C8 A G 96 ? ? 100.47 104.30 -3.83 0.50 N 110 1 N7 A G 96 ? ? C8 A G 96 ? ? N9 A G 96 ? ? 119.46 113.10 6.36 0.50 N 111 1 C8 A G 96 ? ? N9 A G 96 ? ? C4 A G 96 ? ? 102.74 106.40 -3.66 0.40 N 112 1 N9 A G 96 ? ? C4 A G 96 ? ? C5 A G 96 ? ? 101.96 105.40 -3.44 0.40 N 113 1 N3 A G 96 ? ? C4 A G 96 ? ? N9 A G 96 ? ? 132.80 126.00 6.80 0.60 N 114 1 C6 A G 96 ? ? C5 A G 96 ? ? N7 A G 96 ? ? 120.28 130.40 -10.12 0.60 N 115 1 N1 A G 96 ? ? C6 A G 96 ? ? O6 A G 96 ? ? 125.54 119.90 5.64 0.60 N 116 1 C8 A G 96 ? ? N9 A G 96 ? ? "C1'" A G 96 ? ? 115.55 127.00 -11.45 1.30 N 117 1 C4 A G 96 ? ? N9 A G 96 ? ? "C1'" A G 96 ? ? 141.13 126.50 14.63 1.30 N 118 1 "C3'" A G 96 ? ? "O3'" A G 96 ? ? P A G 97 ? ? 126.95 119.70 7.25 1.20 Y 119 1 N1 A U 100 ? ? C2 A U 100 ? ? O2 A U 100 ? ? 127.96 122.80 5.16 0.70 N 120 1 N3 A U 100 ? ? C2 A U 100 ? ? O2 A U 100 ? ? 117.44 122.20 -4.76 0.70 N 121 1 N1 A U 104 ? ? C2 A U 104 ? ? O2 A U 104 ? ? 128.74 122.80 5.94 0.70 N 122 1 N3 A U 104 ? ? C2 A U 104 ? ? O2 A U 104 ? ? 116.53 122.20 -5.67 0.70 N 123 1 C6 A U 104 ? ? N1 A U 104 ? ? "C1'" A U 104 ? ? 112.50 121.20 -8.70 1.40 N 124 1 C2 A U 104 ? ? N1 A U 104 ? ? "C1'" A U 104 ? ? 129.16 117.70 11.46 1.20 N 125 1 "O4'" A A 105 ? ? "C1'" A A 105 ? ? N9 A A 105 ? ? 112.82 108.50 4.32 0.70 N 126 1 N1 A C 107 ? ? C2 A C 107 ? ? O2 A C 107 ? ? 122.93 118.90 4.03 0.60 N 127 1 N3 A C 107 ? ? C4 A C 107 ? ? N4 A C 107 ? ? 113.25 118.00 -4.75 0.70 N 128 1 C4 A A 108 ? ? C5 A A 108 ? ? N7 A A 108 ? ? 114.07 110.70 3.37 0.50 N 129 1 C5 A G 110 ? ? C6 A G 110 ? ? N1 A G 110 ? ? 115.76 111.50 4.26 0.50 N 130 1 N1 A C 112 ? ? C2 A C 112 ? ? O2 A C 112 ? ? 123.09 118.90 4.19 0.60 N 131 1 C6 A C 121 ? ? N1 A C 121 ? ? C2 A C 121 ? ? 117.77 120.30 -2.53 0.40 N 132 1 C5 A C 121 ? ? C6 A C 121 ? ? N1 A C 121 ? ? 125.27 121.00 4.27 0.50 N 133 1 C4 A G 139 ? ? C5 A G 139 ? ? N7 A G 139 ? ? 113.84 110.80 3.04 0.40 N 134 1 N9 A G 139 ? ? C4 A G 139 ? ? C5 A G 139 ? ? 102.36 105.40 -3.04 0.40 N 135 1 N3 A G 139 ? ? C4 A G 139 ? ? N9 A G 139 ? ? 129.80 126.00 3.80 0.60 N 136 1 C6 A G 139 ? ? C5 A G 139 ? ? N7 A G 139 ? ? 125.92 130.40 -4.48 0.60 N 137 1 N3 A G 139 ? ? C2 A G 139 ? ? N2 A G 139 ? ? 124.18 119.90 4.28 0.70 N 138 1 C4 A A 143 ? ? C5 A A 143 ? ? N7 A A 143 ? ? 114.01 110.70 3.31 0.50 N 139 1 N9 A A 143 ? ? C4 A A 143 ? ? C5 A A 143 ? ? 103.09 105.80 -2.71 0.40 N 140 1 C6 A C 145 ? ? N1 A C 145 ? ? C2 A C 145 ? ? 116.46 120.30 -3.84 0.40 N 141 1 C5 A C 145 ? ? C6 A C 145 ? ? N1 A C 145 ? ? 124.17 121.00 3.17 0.50 N 142 1 C2 A A 162 ? ? N3 A A 162 ? ? C4 A A 162 ? ? 113.75 110.60 3.15 0.50 N 143 1 N7 A G 163 ? ? C8 A G 163 ? ? N9 A G 163 ? ? 116.25 113.10 3.15 0.50 N 144 1 C6 A G 163 ? ? C5 A G 163 ? ? N7 A G 163 ? ? 126.68 130.40 -3.72 0.60 N 145 1 N7 A A 164 ? ? C8 A A 164 ? ? N9 A A 164 ? ? 117.35 113.80 3.55 0.50 N 146 1 C5 A G 165 ? ? N7 A G 165 ? ? C8 A G 165 ? ? 100.99 104.30 -3.31 0.50 N 147 1 N7 A G 165 ? ? C8 A G 165 ? ? N9 A G 165 ? ? 117.74 113.10 4.64 0.50 N 148 1 C8 A G 165 ? ? N9 A G 165 ? ? C4 A G 165 ? ? 103.31 106.40 -3.09 0.40 N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8ZMH _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8ZMH _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 224970 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Cryo-EM structure of Unbound BMV TLS' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8ZMH _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1300 _em_imaging.nominal_defocus_max 3300 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8ZMH _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8ZMH _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8ZMH _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2024-05-23 _em_admin.deposition_site PDBJ _em_admin.entry_id 8ZMH _em_admin.last_update 2025-07-23 _em_admin.map_release_date 2025-03-12 _em_admin.title 'Cryo-EM structure of Unbound BMV TLS' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.06 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 12302 _em_entity_assembly_naturalsource.organism 'Brome mosaic virus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 905932 _em_entity_assembly_recombinant.organism 'In vitro transcription vector puc19' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? cryoSPARC 4.2 RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8ZMH 'double helix' 8ZMH 'a-form double helix' 8ZMH 'hairpin loop' 8ZMH tetraloop 8ZMH 'bulge loop' 8ZMH 'mismatched base pair' 8ZMH 'triple helix' 8ZMH 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 13 1_555 0.198 -0.455 -1.284 8.867 0.897 -0.216 1 A_C1:G13_A A 1 ? A 13 ? 19 1 1 A G 2 1_555 A C 12 1_555 0.248 -0.446 -1.124 -10.852 -1.439 -10.430 2 A_G2:C12_A A 2 ? A 12 ? 19 1 1 A U 3 1_555 A A 11 1_555 -0.216 0.102 -0.711 -17.876 9.746 -16.989 3 A_U3:A11_A A 3 ? A 11 ? 20 1 1 A G 4 1_555 A C 10 1_555 -0.195 -0.209 0.678 5.112 13.153 0.257 4 A_G4:C10_A A 4 ? A 10 ? 19 1 1 A G 5 1_555 A U 154 1_555 0.740 -0.567 0.418 -16.344 0.520 165.022 5 A_G5:U154_A A 5 ? A 154 ? 27 2 1 A G 16 1_555 A C 34 1_555 -0.096 -0.529 0.562 20.419 27.836 -19.278 6 A_G16:C34_A A 16 ? A 34 ? 19 1 1 A A 17 1_555 A U 33 1_555 0.342 -0.675 -0.957 -3.974 7.995 -17.602 7 A_A17:U33_A A 17 ? A 33 ? 20 1 1 A C 18 1_555 A G 32 1_555 -0.020 -0.407 -0.229 -1.827 17.682 -4.912 8 A_C18:G32_A A 18 ? A 32 ? 19 1 1 A U 20 1_555 A A 29 1_555 -0.110 0.345 0.573 6.222 0.827 5.720 9 A_U20:A29_A A 20 ? A 29 ? 20 1 1 A C 21 1_555 A G 28 1_555 -0.316 -0.283 -0.400 4.836 14.860 -3.566 10 A_C21:G28_A A 21 ? A 28 ? 19 1 1 A U 22 1_555 A A 27 1_555 -1.002 -0.771 -1.388 39.328 10.891 -13.558 11 A_U22:A27_A A 22 ? A 27 ? 20 1 1 A G 123 1_555 A C 42 1_555 0.123 -0.124 -1.564 -30.219 2.402 -2.827 12 A_G123:C42_A A 123 ? A 42 ? 19 1 1 A G 124 1_555 A C 41 1_555 -0.053 -0.413 -1.224 0.454 0.913 -4.230 13 A_G124:C41_A A 124 ? A 41 ? 19 1 1 A U 125 1_555 A G 40 1_555 0.875 -0.769 -1.285 10.174 -5.797 9.299 14 A_U125:G40_A A 125 ? A 40 ? 28 1 1 A A 126 1_555 A U 39 1_555 -0.047 -0.199 0.196 -3.945 -1.679 1.925 15 A_A126:U39_A A 126 ? A 39 ? 20 1 1 A C 127 1_555 A G 38 1_555 0.160 -0.165 0.155 -0.193 1.994 1.251 16 A_C127:G38_A A 127 ? A 38 ? 19 1 1 A C 128 1_555 A G 37 1_555 0.174 -0.191 0.038 -4.598 -11.760 3.980 17 A_C128:G37_A A 128 ? A 37 ? 19 1 1 A G 129 1_555 A A 36 1_555 -0.164 0.617 -1.541 -31.529 -11.077 -11.257 18 A_G129:A36_A A 129 ? A 36 ? 8 1 1 A U 130 1_555 A A 151 1_555 -0.402 -0.330 0.153 6.174 -8.908 2.472 19 A_U130:A151_A A 130 ? A 151 ? 20 1 1 A A 131 1_555 A U 150 1_555 -0.007 -0.297 0.001 4.954 -7.640 -0.115 20 A_A131:U150_A A 131 ? A 150 ? 20 1 1 A C 132 1_555 A G 149 1_555 0.135 -0.252 -0.251 4.256 -7.674 -1.315 21 A_C132:G149_A A 132 ? A 149 ? 19 1 1 A A 133 1_555 A U 148 1_555 0.107 -0.182 -0.673 -8.581 -3.951 -4.621 22 A_A133:U148_A A 133 ? A 148 ? 20 1 1 A G 134 1_555 A C 147 1_555 -0.036 -0.257 -0.267 -3.945 3.064 -2.194 23 A_G134:C147_A A 134 ? A 147 ? 19 1 1 A U 135 1_555 A A 146 1_555 -0.356 -0.288 0.190 -1.156 12.734 -3.537 24 A_U135:A146_A A 135 ? A 146 ? 20 1 1 A G 136 1_555 A C 145 1_555 0.061 -0.385 -0.706 -1.009 0.956 -3.797 25 A_G136:C145_A A 136 ? A 145 ? 19 1 1 A U 137 1_555 A A 144 1_555 -0.102 -0.377 -0.503 2.799 1.371 -0.150 26 A_U137:A144_A A 137 ? A 144 ? 20 1 1 A U 138 1_555 A A 143 1_555 0.174 -0.319 -0.816 5.247 0.842 -8.426 27 A_U138:A143_A A 138 ? A 143 ? 20 1 1 A G 139 1_555 A A 142 1_555 5.684 -5.710 0.629 11.703 5.793 -34.229 28 A_G139:A142_A A 139 ? A 142 ? ? 10 1 A G 46 1_555 A C 65 1_555 -0.045 -0.273 0.005 0.044 31.591 6.588 29 A_G46:C65_A A 46 ? A 65 ? 19 1 1 A A 47 1_555 A U 64 1_555 0.295 -0.141 -0.749 -12.012 0.551 10.291 30 A_A47:U64_A A 47 ? A 64 ? 20 1 1 A G 48 1_555 A C 63 1_555 -0.135 -0.019 -0.727 -13.756 -3.540 1.618 31 A_G48:C63_A A 48 ? A 63 ? 19 1 1 A A 49 1_555 A U 62 1_555 0.271 -0.561 -1.145 -10.884 -0.875 6.640 32 A_A49:U62_A A 49 ? A 62 ? 20 1 1 A G 50 1_555 A C 61 1_555 -0.043 -0.213 -0.632 -5.274 4.153 0.652 33 A_G50:C61_A A 50 ? A 61 ? 19 1 1 A U 51 1_555 A G 60 1_555 0.757 -0.585 -0.643 8.894 5.956 -8.450 34 A_U51:G60_A A 51 ? A 60 ? 28 1 1 A C 54 1_555 A G 165 1_555 0.197 -0.367 -0.500 1.110 -1.029 4.914 35 A_C54:G165_A A 54 ? A 165 ? 19 1 1 A U 55 1_555 A A 164 1_555 0.503 -0.353 -0.344 -4.459 -1.308 3.110 36 A_U55:A164_A A 55 ? A 164 ? 20 1 1 A C 56 1_555 A G 163 1_555 0.183 -0.396 -0.692 1.638 5.284 -6.891 37 A_C56:G163_A A 56 ? A 163 ? 19 1 1 A U 58 1_555 A A 162 1_555 -0.100 -0.872 0.850 35.740 16.718 5.356 38 A_U58:A162_A A 58 ? A 162 ? 20 1 1 A C 68 1_555 A A 115 1_555 -4.798 4.252 1.444 -56.371 -27.450 -167.015 39 A_C68:A115_A A 68 ? A 115 ? ? ? 1 A G 73 1_555 A C 88 1_555 -0.096 -0.357 -0.308 -1.096 6.993 -6.136 40 A_G73:C88_A A 73 ? A 88 ? 19 1 1 A A 74 1_555 A U 87 1_555 -0.017 -0.248 -0.432 -2.202 3.801 -6.160 41 A_A74:U87_A A 74 ? A 87 ? 20 1 1 A A 75 1_555 A U 86 1_555 -0.032 -0.161 -0.497 -3.988 -0.605 -2.947 42 A_A75:U86_A A 75 ? A 86 ? 20 1 1 A C 76 1_555 A G 85 1_555 0.164 -0.231 -0.421 5.509 -1.647 3.117 43 A_C76:G85_A A 76 ? A 85 ? 19 1 1 A C 77 1_555 A G 84 1_555 0.192 -0.474 -0.925 16.441 5.966 -7.036 44 A_C77:G84_A A 77 ? A 84 ? 19 1 1 A C 78 1_555 A G 83 1_555 -0.300 -0.593 -1.944 32.381 5.285 -11.596 45 A_C78:G83_A A 78 ? A 83 ? 19 1 1 A G 91 1_555 A C 121 1_555 -0.135 -0.420 -0.411 -6.237 -2.929 -2.023 46 A_G91:C121_A A 91 ? A 121 ? 19 1 1 A C 92 1_555 A G 120 1_555 0.147 -0.202 -0.194 -3.864 2.581 -4.953 47 A_C92:G120_A A 92 ? A 120 ? 19 1 1 A U 44 1_555 A A 117 1_555 2.349 -1.083 -0.405 15.012 -60.891 -116.002 48 A_U44:A117_A A 44 ? A 117 ? 24 4 1 A A 93 1_555 A U 119 1_555 0.578 -0.403 -1.596 -13.448 5.322 -11.982 49 A_A93:U119_A A 93 ? A 119 ? 20 1 1 A U 94 1_555 A A 118 1_555 0.183 -0.401 -0.801 0.539 6.379 1.856 50 A_U94:A118_A A 94 ? A 118 ? 20 1 1 A G 95 1_555 A U 113 1_555 -1.036 -2.512 -2.469 56.754 17.368 -23.603 51 A_G95:U113_A A 95 ? A 113 ? 28 1 1 A G 96 1_555 A C 112 1_555 0.002 -1.035 -1.809 -19.858 4.463 -22.147 52 A_G96:C112_A A 96 ? A 112 ? 19 1 1 A G 97 1_555 A U 111 1_555 -0.011 -1.622 -1.715 -8.176 9.956 -16.805 53 A_G97:U111_A A 97 ? A 111 ? 27 1 1 A C 98 1_555 A G 110 1_555 0.022 -0.325 -1.014 -6.705 21.107 -9.042 54 A_C98:G110_A A 98 ? A 110 ? 19 1 1 A U 99 1_555 A A 109 1_555 -0.099 -0.473 -0.602 -4.436 10.376 -10.418 55 A_U99:A109_A A 99 ? A 109 ? 20 1 1 A U 100 1_555 A A 108 1_555 0.065 -0.722 1.071 5.741 14.425 3.168 56 A_U100:A108_A A 100 ? A 108 ? 20 1 1 A G 101 1_555 A C 107 1_555 0.111 -0.709 -1.650 -20.136 15.878 -12.023 57 A_G101:C107_A A 101 ? A 107 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 13 1_555 A G 2 1_555 A C 12 1_555 -1.068 -2.865 4.595 0.851 14.012 34.674 -6.776 1.809 3.213 22.407 -1.362 37.326 1 AA_C1G2:C12G13_AA A 1 ? A 13 ? A 2 ? A 12 ? 1 A G 2 1_555 A C 12 1_555 A U 3 1_555 A A 11 1_555 -0.106 -2.312 3.360 2.906 10.208 39.985 -4.311 0.445 2.702 14.619 -4.162 41.313 2 AA_G2U3:A11C12_AA A 2 ? A 12 ? A 3 ? A 11 ? 1 A U 3 1_555 A A 11 1_555 A G 4 1_555 A C 10 1_555 1.686 -0.630 2.566 -11.812 15.313 31.626 -2.362 -3.717 1.427 25.351 19.555 36.941 3 AA_U3G4:C10A11_AA A 3 ? A 11 ? A 4 ? A 10 ? 1 A G 4 1_555 A C 10 1_555 A G 5 1_555 A U 154 1_555 2.213 1.416 2.888 10.236 11.513 -32.232 -3.512 4.680 1.556 -19.414 17.261 -35.636 4 AA_G4G5:U154C10_AA A 4 ? A 10 ? A 5 ? A 154 ? 1 A G 16 1_555 A C 34 1_555 A A 17 1_555 A U 33 1_555 1.777 -1.611 3.925 14.082 17.933 49.115 -3.120 -0.908 3.535 20.356 -15.984 53.851 5 AA_G16A17:U33C34_AA A 16 ? A 34 ? A 17 ? A 33 ? 1 A A 17 1_555 A U 33 1_555 A C 18 1_555 A G 32 1_555 0.183 -2.189 3.284 -6.115 6.786 32.540 -4.796 -1.241 2.708 11.823 10.654 33.765 6 AA_A17C18:G32U33_AA A 17 ? A 33 ? A 18 ? A 32 ? 1 A C 18 1_555 A G 32 1_555 A U 20 1_555 A A 29 1_555 2.628 -1.790 4.241 11.769 41.277 87.355 -2.154 -1.507 3.602 28.514 -8.130 95.388 7 AA_C18U20:A29G32_AA A 18 ? A 32 ? A 20 ? A 29 ? 1 A C 21 1_555 A G 28 1_555 A U 22 1_555 A A 27 1_555 -1.463 -1.150 2.471 3.942 5.506 29.835 -2.940 3.317 2.025 10.524 -7.534 30.577 8 AA_C21U22:A27G28_AA A 21 ? A 28 ? A 22 ? A 27 ? 1 A G 123 1_555 A C 42 1_555 A G 124 1_555 A C 41 1_555 -0.273 -0.384 2.583 -2.341 5.212 20.772 -2.663 -0.003 2.430 14.112 6.338 21.535 9 AA_G123G124:C41C42_AA A 123 ? A 42 ? A 124 ? A 41 ? 1 A G 124 1_555 A C 41 1_555 A U 125 1_555 A G 40 1_555 0.913 -1.285 3.013 -0.068 4.656 34.077 -2.824 -1.555 2.816 7.900 0.115 34.384 10 AA_G124U125:G40C41_AA A 124 ? A 41 ? A 125 ? A 40 ? 1 A U 125 1_555 A G 40 1_555 A A 126 1_555 A U 39 1_555 0.830 -0.793 3.388 -2.616 23.974 35.212 -3.453 -1.403 2.347 35.024 3.822 42.462 11 AA_U125A126:U39G40_AA A 125 ? A 40 ? A 126 ? A 39 ? 1 A A 126 1_555 A U 39 1_555 A C 127 1_555 A G 38 1_555 -0.129 -1.578 3.167 -0.242 3.693 33.241 -3.318 0.186 2.980 6.430 0.422 33.440 12 AA_A126C127:G38U39_AA A 126 ? A 39 ? A 127 ? A 38 ? 1 A C 127 1_555 A G 38 1_555 A C 128 1_555 A G 37 1_555 0.668 -1.187 3.215 2.275 15.990 34.326 -3.716 -0.763 2.479 25.423 -3.617 37.832 13 AA_C127C128:G37G38_AA A 127 ? A 38 ? A 128 ? A 37 ? 1 A C 128 1_555 A G 37 1_555 A G 129 1_555 A A 36 1_555 0.010 -1.961 3.994 10.324 17.594 32.156 -5.459 1.418 2.521 28.471 -16.706 37.936 14 AA_C128G129:A36G37_AA A 128 ? A 37 ? A 129 ? A 36 ? 1 A G 129 1_555 A A 36 1_555 A U 130 1_555 A A 151 1_555 1.109 -0.713 2.926 -25.823 7.420 34.961 -1.507 -3.404 1.605 10.629 36.994 43.836 15 AA_G129U130:A151A36_AA A 129 ? A 36 ? A 130 ? A 151 ? 1 A U 130 1_555 A A 151 1_555 A A 131 1_555 A U 150 1_555 -0.369 -1.101 2.897 -1.309 17.836 31.379 -3.828 0.447 2.016 30.113 2.210 36.006 16 AA_U130A131:U150A151_AA A 130 ? A 151 ? A 131 ? A 150 ? 1 A A 131 1_555 A U 150 1_555 A C 132 1_555 A G 149 1_555 -0.729 -1.991 3.121 -0.443 0.071 34.694 -3.349 1.158 3.126 0.119 0.742 34.697 17 AA_A131C132:G149U150_AA A 131 ? A 150 ? A 132 ? A 149 ? 1 A C 132 1_555 A G 149 1_555 A A 133 1_555 A U 148 1_555 -0.088 -1.320 3.423 2.214 17.201 31.242 -4.535 0.450 2.386 29.286 -3.769 35.628 18 AA_C132A133:U148G149_AA A 132 ? A 149 ? A 133 ? A 148 ? 1 A A 133 1_555 A U 148 1_555 A G 134 1_555 A C 147 1_555 -0.081 -1.618 2.925 -4.270 10.985 29.144 -4.663 -0.500 2.177 20.790 8.082 31.389 19 AA_A133G134:C147U148_AA A 133 ? A 148 ? A 134 ? A 147 ? 1 A G 134 1_555 A C 147 1_555 A U 135 1_555 A A 146 1_555 -0.280 -1.972 3.200 -3.783 6.877 30.944 -4.738 -0.123 2.724 12.636 6.950 31.901 20 AA_G134U135:A146C147_AA A 134 ? A 147 ? A 135 ? A 146 ? 1 A U 135 1_555 A A 146 1_555 A G 136 1_555 A C 145 1_555 -0.138 -1.039 3.152 5.470 23.710 27.728 -4.428 0.860 1.719 40.905 -9.436 36.733 21 AA_U135G136:C145A146_AA A 135 ? A 146 ? A 136 ? A 145 ? 1 A G 136 1_555 A C 145 1_555 A U 137 1_555 A A 144 1_555 0.345 -2.001 3.106 -1.899 6.684 36.845 -3.898 -0.759 2.694 10.460 2.973 37.472 22 AA_G136U137:A144C145_AA A 136 ? A 145 ? A 137 ? A 144 ? 1 A U 137 1_555 A A 144 1_555 A U 138 1_555 A A 143 1_555 -0.275 -1.459 3.096 4.403 8.231 32.161 -3.741 1.123 2.595 14.481 -7.746 33.453 23 AA_U137U138:A143A144_AA A 137 ? A 144 ? A 138 ? A 143 ? 1 A U 138 1_555 A A 143 1_555 A G 139 1_555 A A 142 1_555 -2.071 -1.567 2.999 -11.162 7.012 68.786 -1.605 1.432 3.110 6.150 9.789 69.885 24 AA_U138G139:A142A143_AA A 138 ? A 143 ? A 139 ? A 142 ? 1 A G 46 1_555 A C 65 1_555 A A 47 1_555 A U 64 1_555 0.941 -1.398 3.514 6.932 36.118 28.798 -4.622 -0.647 1.291 52.249 -10.028 46.402 25 AA_G46A47:U64C65_AA A 46 ? A 65 ? A 47 ? A 64 ? 1 A A 47 1_555 A U 64 1_555 A G 48 1_555 A C 63 1_555 0.048 -1.419 3.105 1.425 19.357 26.608 -5.229 0.115 1.709 36.520 -2.689 32.831 26 AA_A47G48:C63U64_AA A 47 ? A 64 ? A 48 ? A 63 ? 1 A G 48 1_555 A C 63 1_555 A A 49 1_555 A U 62 1_555 0.084 -0.704 3.560 -3.450 7.103 27.820 -3.086 -0.982 3.250 14.410 6.998 28.898 27 AA_G48A49:U62C63_AA A 48 ? A 63 ? A 49 ? A 62 ? 1 A A 49 1_555 A U 62 1_555 A G 50 1_555 A C 61 1_555 0.404 -0.678 2.955 -4.953 9.174 33.854 -2.292 -1.300 2.606 15.310 8.265 35.378 28 AA_A49G50:C61U62_AA A 49 ? A 62 ? A 50 ? A 61 ? 1 A G 50 1_555 A C 61 1_555 A U 51 1_555 A G 60 1_555 -0.595 -1.951 2.929 -1.304 -1.265 29.855 -3.541 0.906 3.030 -2.453 2.528 29.909 29 AA_G50U51:G60C61_AA A 50 ? A 61 ? A 51 ? A 60 ? 1 A C 54 1_555 A G 165 1_555 A U 55 1_555 A A 164 1_555 0.646 -1.519 3.154 3.629 10.984 35.571 -3.689 -0.573 2.637 17.420 -5.755 37.347 30 AA_C54U55:A164G165_AA A 54 ? A 165 ? A 55 ? A 164 ? 1 A U 55 1_555 A A 164 1_555 A C 56 1_555 A G 163 1_555 -0.437 -1.327 2.945 6.326 11.858 35.705 -3.283 1.335 2.298 18.548 -9.895 38.073 31 AA_U55C56:G163A164_AA A 55 ? A 164 ? A 56 ? A 163 ? 1 A C 56 1_555 A G 163 1_555 A U 58 1_555 A A 162 1_555 -0.885 -1.031 4.033 16.142 18.453 57.169 -2.009 1.741 3.264 18.383 -16.081 61.794 32 AA_C56U58:A162G163_AA A 56 ? A 163 ? A 58 ? A 162 ? 1 A G 73 1_555 A C 88 1_555 A A 74 1_555 A U 87 1_555 -0.027 -1.638 3.175 -0.736 12.582 34.427 -4.145 -0.046 2.447 20.429 1.195 36.596 33 AA_G73A74:U87C88_AA A 73 ? A 88 ? A 74 ? A 87 ? 1 A A 74 1_555 A U 87 1_555 A A 75 1_555 A U 86 1_555 0.080 -1.473 3.227 0.307 11.955 31.459 -4.325 -0.092 2.517 21.118 -0.542 33.602 34 AA_A74A75:U86U87_AA A 74 ? A 87 ? A 75 ? A 86 ? 1 A A 75 1_555 A U 86 1_555 A C 76 1_555 A G 85 1_555 0.552 -1.269 2.982 -0.399 4.481 31.398 -3.051 -1.075 2.772 8.227 0.733 31.710 35 AA_A75C76:G85U86_AA A 75 ? A 86 ? A 76 ? A 85 ? 1 A C 76 1_555 A G 85 1_555 A C 77 1_555 A G 84 1_555 -0.617 -1.176 2.945 4.643 6.771 30.282 -3.259 1.884 2.510 12.671 -8.689 31.351 36 AA_C76C77:G84G85_AA A 76 ? A 85 ? A 77 ? A 84 ? 1 A C 77 1_555 A G 84 1_555 A C 78 1_555 A G 83 1_555 0.000 -0.897 3.048 7.456 0.806 27.541 -1.992 1.578 2.920 1.654 -15.305 28.524 37 AA_C77C78:G83G84_AA A 77 ? A 84 ? A 78 ? A 83 ? 1 A G 91 1_555 A C 121 1_555 A C 92 1_555 A G 120 1_555 -0.578 -1.156 3.262 -0.886 4.585 36.667 -2.428 0.795 3.113 7.252 1.402 36.953 38 AA_G91C92:G120C121_AA A 91 ? A 121 ? A 92 ? A 120 ? 1 A C 92 1_555 A G 120 1_555 A U 44 1_555 A A 117 1_555 4.872 -0.625 -1.441 -15.928 -32.100 37.739 -2.135 -4.895 -2.145 -40.303 19.998 51.588 39 AA_C92U44:A117G120_AA A 92 ? A 120 ? A 44 ? A 117 ? 1 A A 93 1_555 A U 119 1_555 A U 94 1_555 A A 118 1_555 0.904 -1.511 3.161 -5.166 5.669 24.507 -4.824 -3.330 2.513 12.956 11.806 25.662 40 AA_A93U94:A118U119_AA A 93 ? A 119 ? A 94 ? A 118 ? 1 A U 94 1_555 A A 118 1_555 A G 95 1_555 A U 113 1_555 -0.069 -0.503 4.036 -21.724 -8.927 45.489 0.206 -1.844 3.742 -10.743 26.145 50.907 41 AA_U94G95:U113A118_AA A 94 ? A 118 ? A 95 ? A 113 ? 1 A G 96 1_555 A C 112 1_555 A G 97 1_555 A U 111 1_555 -0.139 -0.162 3.443 -10.218 6.179 24.445 -1.990 -2.424 3.119 13.604 22.496 27.166 42 AA_G96G97:U111C112_AA A 96 ? A 112 ? A 97 ? A 111 ? 1 A G 97 1_555 A U 111 1_555 A C 98 1_555 A G 110 1_555 0.676 -1.974 3.448 -5.326 16.151 38.535 -4.317 -1.459 2.362 23.149 7.633 41.990 43 AA_G97C98:G110U111_AA A 97 ? A 111 ? A 98 ? A 110 ? 1 A C 98 1_555 A G 110 1_555 A U 99 1_555 A A 109 1_555 -1.186 -1.221 3.518 -3.791 26.459 27.656 -5.072 1.349 1.853 44.376 6.359 38.279 44 AA_C98U99:A109G110_AA A 98 ? A 110 ? A 99 ? A 109 ? 1 A U 99 1_555 A A 109 1_555 A U 100 1_555 A A 108 1_555 -0.577 -2.359 3.112 -18.682 10.541 25.890 -5.637 -1.737 2.006 19.761 35.024 33.504 45 AA_U99U100:A108A109_AA A 99 ? A 109 ? A 100 ? A 108 ? 1 A U 100 1_555 A A 108 1_555 A G 101 1_555 A C 107 1_555 -0.621 -3.305 3.752 14.301 23.973 38.835 -5.772 1.768 1.314 31.588 -18.843 47.510 46 AA_U100G101:C107A108_AA A 100 ? A 108 ? A 101 ? A 107 ? # _pdbx_audit_support.funding_organization 'Other government' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8ZMH _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ #