HEADER OXIDOREDUCTASE 24-MAY-24 8ZMX TITLE CRYSTAL STRUCTURES OF MESO-DIAMINOPIMELATE DEHYDROGENASE FROM BACILLUS TITLE 2 THERMOZEAMAIZE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MESO-DIAMINOPIMELATE D-DEHYDROGENASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DAPDH,MESO-DAP DEHYDROGENASE; COMPND 5 EC: 1.4.1.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOZEAMAIZE; SOURCE 3 ORGANISM_TAXID: 230954; SOURCE 4 GENE: BAA01_00405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.GENG,Y.WEI,Z.J.ZHANG REVDAT 1 13-NOV-24 8ZMX 0 JRNL AUTH Y.WEI,Q.GENG,H.P.LIU,Y.Q.WANG,G.F.ZHANG,X.L.QIAN,H.L.YU, JRNL AUTH 2 J.H.XU,Z.J.ZHANG JRNL TITL HIERARCHICAL ENGINEERING OF MESO-DIAMINOPIMELATE JRNL TITL 2 DEHYDROGENASE FOR EFFICIENT SYNTHESIS OF BULKY D-AMINO ACIDS JRNL REF ACS CATALYSIS V. 14 11447 2024 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.4C03164 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.8100 - 6.4400 0.99 2932 132 0.2063 0.2411 REMARK 3 2 6.4400 - 5.1200 1.00 2765 150 0.2240 0.2725 REMARK 3 3 5.1200 - 4.4700 1.00 2704 164 0.1813 0.2315 REMARK 3 4 4.4700 - 4.0600 1.00 2749 129 0.1814 0.2106 REMARK 3 5 4.0600 - 3.7700 1.00 2690 155 0.2038 0.2807 REMARK 3 6 3.7700 - 3.5500 1.00 2696 131 0.2223 0.2502 REMARK 3 7 3.5500 - 3.3700 1.00 2701 124 0.2201 0.2890 REMARK 3 8 3.3700 - 3.2200 1.00 2680 145 0.2444 0.2787 REMARK 3 9 3.2200 - 3.1000 1.00 2671 143 0.2610 0.3223 REMARK 3 10 3.1000 - 2.9900 1.00 2666 146 0.2765 0.3405 REMARK 3 11 2.9900 - 2.9000 1.00 2677 139 0.2748 0.3068 REMARK 3 12 2.9000 - 2.8200 1.00 2643 153 0.2731 0.3477 REMARK 3 13 2.8200 - 2.7400 1.00 2687 133 0.2745 0.3875 REMARK 3 14 2.7400 - 2.6700 1.00 2640 136 0.2892 0.3572 REMARK 3 15 2.6700 - 2.6100 1.00 2653 150 0.3095 0.3824 REMARK 3 16 2.6100 - 2.5600 1.00 2638 146 0.3331 0.3442 REMARK 3 17 2.5600 - 2.5100 1.00 2653 141 0.3553 0.4276 REMARK 3 18 2.5100 - 2.4600 1.00 2627 143 0.3894 0.4130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6888 REMARK 3 ANGLE : 1.089 9360 REMARK 3 CHIRALITY : 0.058 1105 REMARK 3 PLANARITY : 0.011 1206 REMARK 3 DIHEDRAL : 10.101 1064 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 29-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1300046211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51060 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 49.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 26.80 REMARK 200 R MERGE (I) : 0.21870 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 5.18200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WBB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CARBOXYLIC ACIDS; 0.1 M REMARK 280 IMIDAZOLE-MES MONOHYDRATE (ACID) PH 6.5; 20% V/V ETHYLENE GLYCOL; REMARK 280 10% W/V PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.72500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 78.54500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 78.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.58750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 78.54500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 78.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.86250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 78.54500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.54500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.58750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 78.54500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.54500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.86250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.72500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 -78.54500 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -78.54500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -27.86250 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -78.54500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -78.54500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -27.86250 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -78.54500 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -78.54500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 27.86250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ILE A 4 REMARK 465 ARG A 5 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 GLY A 198 REMARK 465 ALA A 199 REMARK 465 ASP A 200 REMARK 465 PHE A 201 REMARK 465 ALA A 202 REMARK 465 THR A 203 REMARK 465 VAL A 204 REMARK 465 MET B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 ILE B 4 REMARK 465 ARG B 5 REMARK 465 LEU B 195 REMARK 465 GLU B 196 REMARK 465 GLU B 197 REMARK 465 GLY B 198 REMARK 465 ALA B 199 REMARK 465 ASP B 200 REMARK 465 PHE B 201 REMARK 465 ALA B 202 REMARK 465 THR B 203 REMARK 465 VAL B 204 REMARK 465 LYS B 205 REMARK 465 PRO B 212 REMARK 465 TYR B 213 REMARK 465 PHE B 214 REMARK 465 VAL B 215 REMARK 465 HIS B 216 REMARK 465 MET C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 HIS C 1 REMARK 465 SER C 2 REMARK 465 GLU C 3 REMARK 465 ILE C 4 REMARK 465 ARG C 52 REMARK 465 GLU C 53 REMARK 465 LEU C 54 REMARK 465 HIS C 55 REMARK 465 GLU C 194 REMARK 465 LEU C 195 REMARK 465 GLU C 196 REMARK 465 GLU C 197 REMARK 465 GLY C 198 REMARK 465 ALA C 199 REMARK 465 ASP C 200 REMARK 465 PHE C 201 REMARK 465 ALA C 202 REMARK 465 THR C 203 REMARK 465 VAL C 204 REMARK 465 LYS C 205 REMARK 465 GLU C 206 REMARK 465 ARG C 207 REMARK 465 ILE C 208 REMARK 465 LEU C 209 REMARK 465 GLN C 210 REMARK 465 ASP C 211 REMARK 465 PRO C 212 REMARK 465 TYR C 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 -72.44 116.25 REMARK 500 TYR A 17 69.63 -102.57 REMARK 500 GLN A 68 86.31 64.54 REMARK 500 PHE A 99 125.83 -33.09 REMARK 500 ALA A 127 66.59 -112.55 REMARK 500 THR A 129 -74.66 -81.56 REMARK 500 GLU A 206 -80.27 49.79 REMARK 500 ILE A 208 31.63 -78.42 REMARK 500 GLN A 210 -121.65 24.00 REMARK 500 ASP A 211 72.03 -155.79 REMARK 500 PRO A 212 88.07 -62.91 REMARK 500 TYR A 213 -147.58 53.13 REMARK 500 PHE A 214 -24.62 65.69 REMARK 500 TYR B 17 77.37 -104.66 REMARK 500 PHE B 99 126.17 -24.29 REMARK 500 ALA B 127 66.49 -103.43 REMARK 500 THR B 129 -61.47 -102.07 REMARK 500 ALA B 145 83.26 -150.17 REMARK 500 MET B 160 -50.35 -136.50 REMARK 500 ALA B 168 -115.54 -77.51 REMARK 500 ILE B 169 -138.39 33.21 REMARK 500 GLU B 170 -143.87 -79.06 REMARK 500 THR B 184 46.30 38.53 REMARK 500 LEU B 209 11.65 -149.43 REMARK 500 PHE C 99 122.15 -29.52 REMARK 500 ALA C 127 75.43 -103.60 REMARK 500 ASP C 174 143.63 60.73 REMARK 500 VAL C 215 -5.46 -147.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 508 DISTANCE = 6.76 ANGSTROMS DBREF1 8ZMX A 2 307 UNP A0A1Y3PXT7_9BACI DBREF2 8ZMX A A0A1Y3PXT7 2 307 DBREF1 8ZMX B 2 307 UNP A0A1Y3PXT7_9BACI DBREF2 8ZMX B A0A1Y3PXT7 2 307 DBREF1 8ZMX C 2 307 UNP A0A1Y3PXT7_9BACI DBREF2 8ZMX C A0A1Y3PXT7 2 307 SEQADV 8ZMX MET A -5 UNP A0A1Y3PXT INITIATING METHIONINE SEQADV 8ZMX HIS A -4 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS A -3 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS A -2 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS A -1 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS A 0 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS A 1 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX THR A 129 UNP A0A1Y3PXT TRP 129 ENGINEERED MUTATION SEQADV 8ZMX CYS A 134 UNP A0A1Y3PXT ASP 134 ENGINEERED MUTATION SEQADV 8ZMX VAL A 154 UNP A0A1Y3PXT PHE 154 ENGINEERED MUTATION SEQADV 8ZMX ALA A 177 UNP A0A1Y3PXT SER 177 ENGINEERED MUTATION SEQADV 8ZMX ILE A 235 UNP A0A1Y3PXT HIS 235 ENGINEERED MUTATION SEQADV 8ZMX MET B -5 UNP A0A1Y3PXT INITIATING METHIONINE SEQADV 8ZMX HIS B -4 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS B -3 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS B -2 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS B -1 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS B 0 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS B 1 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX THR B 129 UNP A0A1Y3PXT TRP 129 ENGINEERED MUTATION SEQADV 8ZMX CYS B 134 UNP A0A1Y3PXT ASP 134 ENGINEERED MUTATION SEQADV 8ZMX VAL B 154 UNP A0A1Y3PXT PHE 154 ENGINEERED MUTATION SEQADV 8ZMX ALA B 177 UNP A0A1Y3PXT SER 177 ENGINEERED MUTATION SEQADV 8ZMX ILE B 235 UNP A0A1Y3PXT HIS 235 ENGINEERED MUTATION SEQADV 8ZMX MET C -5 UNP A0A1Y3PXT INITIATING METHIONINE SEQADV 8ZMX HIS C -4 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS C -3 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS C -2 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS C -1 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS C 0 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX HIS C 1 UNP A0A1Y3PXT EXPRESSION TAG SEQADV 8ZMX THR C 129 UNP A0A1Y3PXT TRP 129 ENGINEERED MUTATION SEQADV 8ZMX CYS C 134 UNP A0A1Y3PXT ASP 134 ENGINEERED MUTATION SEQADV 8ZMX VAL C 154 UNP A0A1Y3PXT PHE 154 ENGINEERED MUTATION SEQADV 8ZMX ALA C 177 UNP A0A1Y3PXT SER 177 ENGINEERED MUTATION SEQADV 8ZMX ILE C 235 UNP A0A1Y3PXT HIS 235 ENGINEERED MUTATION SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER GLU ILE ARG THR GLU SEQRES 2 A 313 ARG PRO ILE ARG VAL ALA ILE ILE GLY TYR GLY ASN ILE SEQRES 3 A 313 GLY GLN TYR ALA LEU GLN ALA VAL GLU GLU ALA PRO ASP SEQRES 4 A 313 MET GLU LEU ALA GLY VAL VAL ARG ARG GLN SER SER LEU SEQRES 5 A 313 GLU LYS PRO LEU PRO ARG GLU LEU HIS GLY VAL SER VAL SEQRES 6 A 313 VAL SER ASP VAL SER ALA LEU GLY GLN VAL ASP VAL ALA SEQRES 7 A 313 VAL LEU CYS THR PRO THR ARG GLU THR PRO ALA ILE ALA SEQRES 8 A 313 LYS GLU LEU LEU ALA ARG GLY ILE HIS THR ILE ASP SER SEQRES 9 A 313 PHE ASP ILE HIS GLN GLU ILE VAL GLN VAL ARG HIS GLU SEQRES 10 A 313 LEU ASP GLU VAL ALA ARG ALA HIS GLN ALA VAL ALA ILE SEQRES 11 A 313 LEU ALA ALA GLY THR ASP PRO GLY THR CYS SER MET ILE SEQRES 12 A 313 ARG SER ILE LEU GLU PHE MET ALA PRO TYR GLY ILE THR SEQRES 13 A 313 TYR THR ASN VAL GLY PRO GLY MET SER MET GLY HIS SER SEQRES 14 A 313 VAL ALA VAL LYS ALA ILE GLU GLY VAL LYS ASP ALA LEU SEQRES 15 A 313 ALA LEU THR ILE PRO ILE GLY THR GLY LEU HIS ARG ARG SEQRES 16 A 313 MET VAL TYR VAL GLU LEU GLU GLU GLY ALA ASP PHE ALA SEQRES 17 A 313 THR VAL LYS GLU ARG ILE LEU GLN ASP PRO TYR PHE VAL SEQRES 18 A 313 HIS ASP GLU THR HIS VAL LEU GLN VAL ASP ASP VAL LYS SEQRES 19 A 313 GLN LEU ILE ASP ARG GLY ILE GLY VAL ARG MET GLU ARG SEQRES 20 A 313 LYS GLY VAL SER GLY GLN THR GLN ASN GLN LEU PHE THR SEQRES 21 A 313 TYR GLU MET ARG ILE ASN ASN PRO ALA LEU THR SER GLN SEQRES 22 A 313 VAL MET ILE ALA SER ALA ARG ALA ALA MET ARG GLN LYS SEQRES 23 A 313 PRO GLY ALA TYR THR MET ILE GLU ILE PRO ILE ILE ASP SEQRES 24 A 313 PHE LEU TYR GLY ASP ARG ASP GLU LEU ILE ARG ARG LEU SEQRES 25 A 313 VAL SEQRES 1 B 313 MET HIS HIS HIS HIS HIS HIS SER GLU ILE ARG THR GLU SEQRES 2 B 313 ARG PRO ILE ARG VAL ALA ILE ILE GLY TYR GLY ASN ILE SEQRES 3 B 313 GLY GLN TYR ALA LEU GLN ALA VAL GLU GLU ALA PRO ASP SEQRES 4 B 313 MET GLU LEU ALA GLY VAL VAL ARG ARG GLN SER SER LEU SEQRES 5 B 313 GLU LYS PRO LEU PRO ARG GLU LEU HIS GLY VAL SER VAL SEQRES 6 B 313 VAL SER ASP VAL SER ALA LEU GLY GLN VAL ASP VAL ALA SEQRES 7 B 313 VAL LEU CYS THR PRO THR ARG GLU THR PRO ALA ILE ALA SEQRES 8 B 313 LYS GLU LEU LEU ALA ARG GLY ILE HIS THR ILE ASP SER SEQRES 9 B 313 PHE ASP ILE HIS GLN GLU ILE VAL GLN VAL ARG HIS GLU SEQRES 10 B 313 LEU ASP GLU VAL ALA ARG ALA HIS GLN ALA VAL ALA ILE SEQRES 11 B 313 LEU ALA ALA GLY THR ASP PRO GLY THR CYS SER MET ILE SEQRES 12 B 313 ARG SER ILE LEU GLU PHE MET ALA PRO TYR GLY ILE THR SEQRES 13 B 313 TYR THR ASN VAL GLY PRO GLY MET SER MET GLY HIS SER SEQRES 14 B 313 VAL ALA VAL LYS ALA ILE GLU GLY VAL LYS ASP ALA LEU SEQRES 15 B 313 ALA LEU THR ILE PRO ILE GLY THR GLY LEU HIS ARG ARG SEQRES 16 B 313 MET VAL TYR VAL GLU LEU GLU GLU GLY ALA ASP PHE ALA SEQRES 17 B 313 THR VAL LYS GLU ARG ILE LEU GLN ASP PRO TYR PHE VAL SEQRES 18 B 313 HIS ASP GLU THR HIS VAL LEU GLN VAL ASP ASP VAL LYS SEQRES 19 B 313 GLN LEU ILE ASP ARG GLY ILE GLY VAL ARG MET GLU ARG SEQRES 20 B 313 LYS GLY VAL SER GLY GLN THR GLN ASN GLN LEU PHE THR SEQRES 21 B 313 TYR GLU MET ARG ILE ASN ASN PRO ALA LEU THR SER GLN SEQRES 22 B 313 VAL MET ILE ALA SER ALA ARG ALA ALA MET ARG GLN LYS SEQRES 23 B 313 PRO GLY ALA TYR THR MET ILE GLU ILE PRO ILE ILE ASP SEQRES 24 B 313 PHE LEU TYR GLY ASP ARG ASP GLU LEU ILE ARG ARG LEU SEQRES 25 B 313 VAL SEQRES 1 C 313 MET HIS HIS HIS HIS HIS HIS SER GLU ILE ARG THR GLU SEQRES 2 C 313 ARG PRO ILE ARG VAL ALA ILE ILE GLY TYR GLY ASN ILE SEQRES 3 C 313 GLY GLN TYR ALA LEU GLN ALA VAL GLU GLU ALA PRO ASP SEQRES 4 C 313 MET GLU LEU ALA GLY VAL VAL ARG ARG GLN SER SER LEU SEQRES 5 C 313 GLU LYS PRO LEU PRO ARG GLU LEU HIS GLY VAL SER VAL SEQRES 6 C 313 VAL SER ASP VAL SER ALA LEU GLY GLN VAL ASP VAL ALA SEQRES 7 C 313 VAL LEU CYS THR PRO THR ARG GLU THR PRO ALA ILE ALA SEQRES 8 C 313 LYS GLU LEU LEU ALA ARG GLY ILE HIS THR ILE ASP SER SEQRES 9 C 313 PHE ASP ILE HIS GLN GLU ILE VAL GLN VAL ARG HIS GLU SEQRES 10 C 313 LEU ASP GLU VAL ALA ARG ALA HIS GLN ALA VAL ALA ILE SEQRES 11 C 313 LEU ALA ALA GLY THR ASP PRO GLY THR CYS SER MET ILE SEQRES 12 C 313 ARG SER ILE LEU GLU PHE MET ALA PRO TYR GLY ILE THR SEQRES 13 C 313 TYR THR ASN VAL GLY PRO GLY MET SER MET GLY HIS SER SEQRES 14 C 313 VAL ALA VAL LYS ALA ILE GLU GLY VAL LYS ASP ALA LEU SEQRES 15 C 313 ALA LEU THR ILE PRO ILE GLY THR GLY LEU HIS ARG ARG SEQRES 16 C 313 MET VAL TYR VAL GLU LEU GLU GLU GLY ALA ASP PHE ALA SEQRES 17 C 313 THR VAL LYS GLU ARG ILE LEU GLN ASP PRO TYR PHE VAL SEQRES 18 C 313 HIS ASP GLU THR HIS VAL LEU GLN VAL ASP ASP VAL LYS SEQRES 19 C 313 GLN LEU ILE ASP ARG GLY ILE GLY VAL ARG MET GLU ARG SEQRES 20 C 313 LYS GLY VAL SER GLY GLN THR GLN ASN GLN LEU PHE THR SEQRES 21 C 313 TYR GLU MET ARG ILE ASN ASN PRO ALA LEU THR SER GLN SEQRES 22 C 313 VAL MET ILE ALA SER ALA ARG ALA ALA MET ARG GLN LYS SEQRES 23 C 313 PRO GLY ALA TYR THR MET ILE GLU ILE PRO ILE ILE ASP SEQRES 24 C 313 PHE LEU TYR GLY ASP ARG ASP GLU LEU ILE ARG ARG LEU SEQRES 25 C 313 VAL HET NAP A 401 48 HET NAP B 401 48 HET NAP C 401 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 4 NAP 3(C21 H28 N7 O17 P3) FORMUL 7 HOH *26(H2 O) HELIX 1 AA1 GLY A 18 ALA A 31 1 14 HELIX 2 AA2 ARG A 42 LYS A 48 1 7 HELIX 3 AA3 PRO A 51 HIS A 55 5 5 HELIX 4 AA4 ASP A 62 GLY A 67 5 6 HELIX 5 AA5 PRO A 77 ARG A 79 5 3 HELIX 6 AA6 GLU A 80 ARG A 91 1 12 HELIX 7 AA7 ILE A 101 GLN A 103 5 3 HELIX 8 AA8 GLU A 104 HIS A 119 1 16 HELIX 9 AA9 GLY A 132 ALA A 145 1 14 HELIX 10 AB1 SER A 159 ILE A 169 1 11 HELIX 11 AB2 ASP A 226 ILE A 231 5 6 HELIX 12 AB3 ASN A 261 MET A 277 1 17 HELIX 13 AB4 THR A 285 ILE A 289 5 5 HELIX 14 AB5 PRO A 290 LEU A 295 5 6 HELIX 15 AB6 ASP A 298 VAL A 307 1 10 HELIX 16 AB7 GLY B 18 ALA B 31 1 14 HELIX 17 AB8 ARG B 42 GLU B 47 1 6 HELIX 18 AB9 PRO B 51 HIS B 55 5 5 HELIX 19 AC1 ASP B 62 GLY B 67 5 6 HELIX 20 AC2 PRO B 77 ARG B 79 5 3 HELIX 21 AC3 GLU B 80 ALA B 90 1 11 HELIX 22 AC4 ILE B 101 GLN B 103 5 3 HELIX 23 AC5 GLU B 104 HIS B 119 1 16 HELIX 24 AC6 GLY B 132 ALA B 145 1 14 HELIX 25 AC7 MET B 160 ALA B 168 1 9 HELIX 26 AC8 ASP B 226 ILE B 231 5 6 HELIX 27 AC9 ASN B 261 MET B 277 1 17 HELIX 28 AD1 THR B 285 ILE B 289 5 5 HELIX 29 AD2 PRO B 290 LEU B 295 5 6 HELIX 30 AD3 ASP B 298 VAL B 307 1 10 HELIX 31 AD4 GLY C 18 ALA C 31 1 14 HELIX 32 AD5 ARG C 42 LYS C 48 1 7 HELIX 33 AD6 ASP C 62 GLY C 67 5 6 HELIX 34 AD7 GLU C 80 ALA C 90 1 11 HELIX 35 AD8 ILE C 101 GLN C 103 5 3 HELIX 36 AD9 GLU C 104 HIS C 119 1 16 HELIX 37 AE1 GLY C 132 ALA C 145 1 14 HELIX 38 AE2 SER C 159 LYS C 167 1 9 HELIX 39 AE3 ASP C 226 ILE C 231 5 6 HELIX 40 AE4 ASN C 261 MET C 277 1 17 HELIX 41 AE5 THR C 285 ILE C 289 5 5 HELIX 42 AE6 PRO C 290 LEU C 295 5 6 HELIX 43 AE7 ASP C 298 VAL C 307 1 10 SHEET 1 AA1 7 VAL A 59 VAL A 60 0 SHEET 2 AA1 7 MET A 34 VAL A 40 1 N VAL A 39 O VAL A 60 SHEET 3 AA1 7 ILE A 10 ILE A 15 1 N VAL A 12 O ALA A 37 SHEET 4 AA1 7 VAL A 71 LEU A 74 1 O VAL A 73 N ALA A 13 SHEET 5 AA1 7 HIS A 94 ILE A 96 1 O ILE A 96 N LEU A 74 SHEET 6 AA1 7 VAL A 122 ILE A 124 1 O ILE A 124 N THR A 95 SHEET 7 AA1 7 GLY A 282 TYR A 284 1 O TYR A 284 N ALA A 123 SHEET 1 AA2 6 TYR A 147 VAL A 154 0 SHEET 2 AA2 6 GLY A 234 SER A 245 -1 O ARG A 238 N ASN A 153 SHEET 3 AA2 6 THR A 248 ASN A 260 -1 O TYR A 255 N MET A 239 SHEET 4 AA2 6 THR C 248 ASN C 260 -1 O GLU C 256 N THR A 254 SHEET 5 AA2 6 GLY C 234 SER C 245 -1 N GLY C 243 O GLN C 251 SHEET 6 AA2 6 TYR C 147 GLY C 155 -1 N ASN C 153 O ARG C 238 SHEET 1 AA3 4 GLY A 157 MET A 158 0 SHEET 2 AA3 4 ASP A 174 PRO A 181 -1 O THR A 179 N GLY A 157 SHEET 3 AA3 4 HIS A 187 GLU A 194 -1 O TYR A 192 N LEU A 176 SHEET 4 AA3 4 THR A 219 GLN A 223 1 O LEU A 222 N VAL A 193 SHEET 1 AA4 7 VAL B 59 VAL B 60 0 SHEET 2 AA4 7 MET B 34 VAL B 40 1 N VAL B 39 O VAL B 60 SHEET 3 AA4 7 ILE B 10 ILE B 15 1 N VAL B 12 O ALA B 37 SHEET 4 AA4 7 VAL B 71 LEU B 74 1 O VAL B 73 N ILE B 15 SHEET 5 AA4 7 HIS B 94 ILE B 96 1 O ILE B 96 N LEU B 74 SHEET 6 AA4 7 VAL B 122 ILE B 124 1 O ILE B 124 N THR B 95 SHEET 7 AA4 7 GLY B 282 TYR B 284 1 O TYR B 284 N ALA B 123 SHEET 1 AA5 3 TYR B 147 VAL B 154 0 SHEET 2 AA5 3 GLY B 234 SER B 245 -1 O ARG B 238 N ASN B 153 SHEET 3 AA5 3 THR B 248 ASN B 260 -1 O TYR B 255 N MET B 239 SHEET 1 AA6 4 GLY B 157 MET B 158 0 SHEET 2 AA6 4 ALA B 175 GLY B 183 -1 O THR B 179 N GLY B 157 SHEET 3 AA6 4 LEU B 186 VAL B 193 -1 O LEU B 186 N GLY B 183 SHEET 4 AA6 4 THR B 219 GLN B 223 1 O LEU B 222 N VAL B 191 SHEET 1 AA7 7 VAL C 59 VAL C 60 0 SHEET 2 AA7 7 MET C 34 VAL C 40 1 N VAL C 39 O VAL C 60 SHEET 3 AA7 7 ILE C 10 ILE C 15 1 N VAL C 12 O ALA C 37 SHEET 4 AA7 7 VAL C 71 LEU C 74 1 O VAL C 73 N ALA C 13 SHEET 5 AA7 7 HIS C 94 ILE C 96 1 O ILE C 96 N LEU C 74 SHEET 6 AA7 7 VAL C 122 ILE C 124 1 O ILE C 124 N THR C 95 SHEET 7 AA7 7 GLY C 282 TYR C 284 1 O TYR C 284 N ALA C 123 SHEET 1 AA8 4 GLY C 157 MET C 158 0 SHEET 2 AA8 4 LEU C 176 GLY C 183 -1 O THR C 179 N GLY C 157 SHEET 3 AA8 4 LEU C 186 TYR C 192 -1 O TYR C 192 N LEU C 176 SHEET 4 AA8 4 THR C 219 LEU C 222 1 O HIS C 220 N VAL C 191 CRYST1 157.090 157.090 111.450 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006366 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008973 0.00000