HEADER SIGNALING PROTEIN 30-MAY-24 8ZPN TITLE CRYO-EM STRUCUTRE OF CXCR4 COMPLEXED WITH ANTAGONIST AMD3100 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562,C-X-C CHEMOKINE RECEPTOR TYPE 4; COMPND 3 CHAIN: R; COMPND 4 SYNONYM: CYTOCHROME B-562,CXC-R4,CXCR-4,FB22,FUSIN,HM89,LCR1, COMPND 5 LEUKOCYTE-DERIVED SEVEN TRANSMEMBRANE DOMAIN RECEPTOR,LESTR, COMPND 6 LIPOPOLYSACCHARIDE-ASSOCIATED PROTEIN 3,LAP-3,LPS-ASSOCIATED PROTEIN COMPND 7 3,NPYRL,STROMAL CELL-DERIVED FACTOR 1 RECEPTOR,SDF-1 RECEPTOR; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NB6 NANOBODY; COMPND 11 CHAIN: N; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 562, 9606; SOURCE 5 GENE: CYBC, CXCR4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CXC MOTIF CHEMOKINE RECEPTOR 4, ANTAGONIST, SIGNALING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR H.Z.JIAO,H.L.HU REVDAT 2 02-APR-25 8ZPN 1 JRNL REVDAT 1 26-FEB-25 8ZPN 0 JRNL AUTH X.SANG,H.JIAO,Q.MENG,X.FANG,Q.PAN,J.ZHOU,T.QIAN,W.ZHANG, JRNL AUTH 2 Y.XU,J.AN,Z.HUANG,H.HU JRNL TITL STRUCTURAL MECHANISMS UNDERLYING THE MODULATION OF CXCR4 BY JRNL TITL 2 DIVERSE SMALL-MOLECULE ANTAGONISTS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 95122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 40063796 JRNL DOI 10.1073/PNAS.2425795122 REMARK 2 REMARK 2 RESOLUTION. 3.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.310 REMARK 3 NUMBER OF PARTICLES : 90157 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8ZPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 03-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1300048278. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : AMD3100-CXCR4-KOR-NB6 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5350.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET R -137 REMARK 465 LYS R -136 REMARK 465 THR R -135 REMARK 465 ILE R -134 REMARK 465 ILE R -133 REMARK 465 ALA R -132 REMARK 465 LEU R -131 REMARK 465 SER R -130 REMARK 465 TYR R -129 REMARK 465 ILE R -128 REMARK 465 PHE R -127 REMARK 465 CYS R -126 REMARK 465 LEU R -125 REMARK 465 VAL R -124 REMARK 465 PHE R -123 REMARK 465 ALA R -122 REMARK 465 ASP R -121 REMARK 465 TYR R -120 REMARK 465 LYS R -119 REMARK 465 ASP R -118 REMARK 465 ASP R -117 REMARK 465 ASP R -116 REMARK 465 ASP R -115 REMARK 465 LYS R -114 REMARK 465 GLY R -113 REMARK 465 SER R -112 REMARK 465 ALA R -111 REMARK 465 ASP R -110 REMARK 465 LEU R -109 REMARK 465 GLU R -108 REMARK 465 ASP R -107 REMARK 465 ASN R -106 REMARK 465 TRP R -105 REMARK 465 GLU R -104 REMARK 465 THR R -103 REMARK 465 LEU R -102 REMARK 465 ASN R -101 REMARK 465 ASP R -100 REMARK 465 ASN R -99 REMARK 465 LEU R -98 REMARK 465 LYS R -97 REMARK 465 VAL R -96 REMARK 465 ILE R -95 REMARK 465 GLU R -94 REMARK 465 LYS R -93 REMARK 465 ALA R -92 REMARK 465 ASP R -91 REMARK 465 ASN R -90 REMARK 465 ALA R -89 REMARK 465 ALA R -88 REMARK 465 GLN R -87 REMARK 465 VAL R -86 REMARK 465 LYS R -85 REMARK 465 ASP R -84 REMARK 465 ALA R -83 REMARK 465 LEU R -82 REMARK 465 THR R -81 REMARK 465 LYS R -80 REMARK 465 MET R -79 REMARK 465 ARG R -78 REMARK 465 ALA R -77 REMARK 465 ALA R -76 REMARK 465 ALA R -75 REMARK 465 LEU R -74 REMARK 465 ASP R -73 REMARK 465 ALA R -72 REMARK 465 GLN R -71 REMARK 465 LYS R -70 REMARK 465 ALA R -69 REMARK 465 THR R -68 REMARK 465 PRO R -67 REMARK 465 PRO R -66 REMARK 465 LYS R -65 REMARK 465 LEU R -64 REMARK 465 GLU R -63 REMARK 465 ASP R -62 REMARK 465 LYS R -61 REMARK 465 SER R -60 REMARK 465 PRO R -59 REMARK 465 ASP R -58 REMARK 465 SER R -57 REMARK 465 PRO R -56 REMARK 465 GLU R -55 REMARK 465 MET R -54 REMARK 465 LYS R -53 REMARK 465 ASP R -52 REMARK 465 PHE R -51 REMARK 465 ARG R -50 REMARK 465 HIS R -49 REMARK 465 GLY R -48 REMARK 465 PHE R -47 REMARK 465 ASP R -46 REMARK 465 ILE R -45 REMARK 465 LEU R -44 REMARK 465 VAL R -43 REMARK 465 GLY R -42 REMARK 465 GLN R -41 REMARK 465 ILE R -40 REMARK 465 ASP R -39 REMARK 465 ASP R -38 REMARK 465 ALA R -37 REMARK 465 LEU R -36 REMARK 465 LYS R -35 REMARK 465 LEU R -34 REMARK 465 ALA R -33 REMARK 465 ASN R -32 REMARK 465 GLU R -31 REMARK 465 GLY R -30 REMARK 465 LYS R -29 REMARK 465 VAL R -28 REMARK 465 LYS R -27 REMARK 465 GLU R -26 REMARK 465 ALA R -25 REMARK 465 GLN R -24 REMARK 465 ALA R -23 REMARK 465 ALA R -22 REMARK 465 ALA R -21 REMARK 465 GLU R -20 REMARK 465 GLN R -19 REMARK 465 LEU R -18 REMARK 465 LYS R -17 REMARK 465 THR R -16 REMARK 465 THR R -15 REMARK 465 ARG R -14 REMARK 465 ASN R -13 REMARK 465 ALA R -12 REMARK 465 TYR R -11 REMARK 465 ILE R -10 REMARK 465 GLN R -9 REMARK 465 LYS R -8 REMARK 465 TYR R -7 REMARK 465 LEU R -6 REMARK 465 LEU R -5 REMARK 465 VAL R -4 REMARK 465 PRO R -3 REMARK 465 ARG R -2 REMARK 465 GLY R -1 REMARK 465 SER R 0 REMARK 465 MET R 1 REMARK 465 GLU R 2 REMARK 465 GLY R 3 REMARK 465 ILE R 4 REMARK 465 SER R 5 REMARK 465 ILE R 6 REMARK 465 TYR R 7 REMARK 465 THR R 8 REMARK 465 SER R 9 REMARK 465 ASP R 10 REMARK 465 ASN R 11 REMARK 465 TYR R 12 REMARK 465 THR R 13 REMARK 465 GLU R 14 REMARK 465 GLU R 15 REMARK 465 MET R 16 REMARK 465 GLY R 17 REMARK 465 SER R 18 REMARK 465 GLY R 19 REMARK 465 ASP R 20 REMARK 465 TYR R 21 REMARK 465 ASP R 22 REMARK 465 SER R 23 REMARK 465 MET R 24 REMARK 465 LYS R 25 REMARK 465 GLU R 26 REMARK 465 PRO R 27 REMARK 465 CYS R 28 REMARK 465 PHE R 29 REMARK 465 ARG R 30 REMARK 465 GLU R 31 REMARK 465 GLU R 32 REMARK 465 ASN R 33 REMARK 465 LYS R 316 REMARK 465 PHE R 317 REMARK 465 LYS R 318 REMARK 465 THR R 319 REMARK 465 SER R 320 REMARK 465 ALA R 321 REMARK 465 GLN R 322 REMARK 465 HIS R 323 REMARK 465 ALA R 324 REMARK 465 LEU R 325 REMARK 465 THR R 326 REMARK 465 SER R 327 REMARK 465 GLY R 328 REMARK 465 ARG R 329 REMARK 465 PRO R 330 REMARK 465 LEU R 331 REMARK 465 GLU R 332 REMARK 465 VAL R 333 REMARK 465 LEU R 334 REMARK 465 PHE R 335 REMARK 465 GLN R 336 REMARK 465 GLY R 337 REMARK 465 PRO R 338 REMARK 465 HIS R 339 REMARK 465 HIS R 340 REMARK 465 HIS R 341 REMARK 465 HIS R 342 REMARK 465 HIS R 343 REMARK 465 HIS R 344 REMARK 465 HIS R 345 REMARK 465 HIS R 346 REMARK 465 HIS R 347 REMARK 465 HIS R 348 REMARK 465 MET N -37 REMARK 465 LEU N -36 REMARK 465 LEU N -35 REMARK 465 VAL N -34 REMARK 465 ASN N -33 REMARK 465 GLN N -32 REMARK 465 SER N -31 REMARK 465 HIS N -30 REMARK 465 GLN N -29 REMARK 465 GLY N -28 REMARK 465 PHE N -27 REMARK 465 ASN N -26 REMARK 465 LYS N -25 REMARK 465 GLU N -24 REMARK 465 HIS N -23 REMARK 465 THR N -22 REMARK 465 SER N -21 REMARK 465 LYS N -20 REMARK 465 MET N -19 REMARK 465 VAL N -18 REMARK 465 SER N -17 REMARK 465 ALA N -16 REMARK 465 ILE N -15 REMARK 465 VAL N -14 REMARK 465 LEU N -13 REMARK 465 TYR N -12 REMARK 465 VAL N -11 REMARK 465 LEU N -10 REMARK 465 LEU N -9 REMARK 465 ALA N -8 REMARK 465 ALA N -7 REMARK 465 ALA N -6 REMARK 465 ALA N -5 REMARK 465 HIS N -4 REMARK 465 SER N -3 REMARK 465 ALA N -2 REMARK 465 PHE N -1 REMARK 465 ALA N 0 REMARK 465 MET N 1 REMARK 465 ALA N 2 REMARK 465 ARG N 41 REMARK 465 VAL N 42 REMARK 465 SER N 43 REMARK 465 GLY N 44 REMARK 465 ASN N 45 REMARK 465 HIS N 124 REMARK 465 HIS N 125 REMARK 465 HIS N 126 REMARK 465 HIS N 127 REMARK 465 HIS N 128 REMARK 465 HIS N 129 REMARK 465 HIS N 130 REMARK 465 HIS N 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN N 3 CG CD OE1 NE2 REMARK 470 GLN N 5 CG CD OE1 NE2 REMARK 470 LEU N 13 CG CD1 CD2 REMARK 470 GLN N 15 CG CD OE1 NE2 REMARK 470 SER N 27 OG REMARK 470 LEU N 49 CG CD1 CD2 REMARK 470 SER N 52 OG REMARK 470 SER N 58 OG REMARK 470 LYS N 60 CG CD CE NZ REMARK 470 ASP N 63 CG OD1 OD2 REMARK 470 SER N 64 OG REMARK 470 VAL N 65 CG1 CG2 REMARK 470 LYS N 66 CG CD CE NZ REMARK 470 LYS N 77 CG CD CE NZ REMARK 470 LYS N 88 CG CD CE NZ REMARK 470 VAL N 121 CG1 CG2 REMARK 470 SER N 122 OG REMARK 470 SER N 123 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA R 100 -55.91 -122.13 REMARK 500 PRO R 147 40.21 -84.56 REMARK 500 ALA R 180 -179.92 -67.96 REMARK 500 ASP R 182 -95.10 59.57 REMARK 500 SER R 233 -127.99 58.72 REMARK 500 ILE R 277 -54.23 -126.16 REMARK 500 PHE R 300 0.65 -65.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-60350 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCUTRE OF CXCR4 COMPLEXED WITH ANTAGONIST AMD3100 DBREF 8ZPN R -111 -7 UNP P0ABE7 C562_ECOLX 23 127 DBREF 8ZPN R 1 224 UNP P61073 CXCR4_HUMAN 1 224 DBREF 8ZPN R 249 327 UNP P61073 CXCR4_HUMAN 241 319 DBREF 8ZPN N -37 131 PDB 8ZPN 8ZPN -37 131 SEQADV 8ZPN MET R -137 UNP P0ABE7 INITIATING METHIONINE SEQADV 8ZPN LYS R -136 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN THR R -135 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ILE R -134 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ILE R -133 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ALA R -132 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN LEU R -131 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN SER R -130 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN TYR R -129 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ILE R -128 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN PHE R -127 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN CYS R -126 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN LEU R -125 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN VAL R -124 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN PHE R -123 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ALA R -122 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ASP R -121 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN TYR R -120 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN LYS R -119 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ASP R -118 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ASP R -117 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ASP R -116 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN ASP R -115 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN LYS R -114 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN GLY R -113 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN SER R -112 UNP P0ABE7 EXPRESSION TAG SEQADV 8ZPN TRP R -105 UNP P0ABE7 MET 29 CONFLICT SEQADV 8ZPN ILE R -10 UNP P0ABE7 HIS 124 CONFLICT SEQADV 8ZPN LEU R -6 UNP P0ABE7 LINKER SEQADV 8ZPN LEU R -5 UNP P0ABE7 LINKER SEQADV 8ZPN VAL R -4 UNP P0ABE7 LINKER SEQADV 8ZPN PRO R -3 UNP P0ABE7 LINKER SEQADV 8ZPN ARG R -2 UNP P0ABE7 LINKER SEQADV 8ZPN GLY R -1 UNP P0ABE7 LINKER SEQADV 8ZPN SER R 0 UNP P0ABE7 LINKER SEQADV 8ZPN TRP R 125 UNP P61073 LEU 125 CONFLICT SEQADV 8ZPN ARG R 225 UNP P61073 LINKER SEQADV 8ZPN LEU R 226 UNP P61073 LINKER SEQADV 8ZPN LYS R 227 UNP P61073 LINKER SEQADV 8ZPN SER R 228 UNP P61073 LINKER SEQADV 8ZPN VAL R 229 UNP P61073 LINKER SEQADV 8ZPN ARG R 230 UNP P61073 LINKER SEQADV 8ZPN LEU R 231 UNP P61073 LINKER SEQADV 8ZPN LEU R 232 UNP P61073 LINKER SEQADV 8ZPN SER R 233 UNP P61073 LINKER SEQADV 8ZPN GLY R 234 UNP P61073 LINKER SEQADV 8ZPN SER R 235 UNP P61073 LINKER SEQADV 8ZPN ARG R 236 UNP P61073 LINKER SEQADV 8ZPN GLU R 237 UNP P61073 LINKER SEQADV 8ZPN LYS R 238 UNP P61073 LINKER SEQADV 8ZPN ASP R 239 UNP P61073 LINKER SEQADV 8ZPN ARG R 240 UNP P61073 LINKER SEQADV 8ZPN ASN R 241 UNP P61073 LINKER SEQADV 8ZPN LEU R 242 UNP P61073 LINKER SEQADV 8ZPN ARG R 243 UNP P61073 LINKER SEQADV 8ZPN ARG R 244 UNP P61073 LINKER SEQADV 8ZPN ILE R 245 UNP P61073 LINKER SEQADV 8ZPN THR R 246 UNP P61073 LINKER SEQADV 8ZPN ARG R 247 UNP P61073 LINKER SEQADV 8ZPN PRO R 248 UNP P61073 LINKER SEQADV 8ZPN GLY R 328 UNP P61073 EXPRESSION TAG SEQADV 8ZPN ARG R 329 UNP P61073 EXPRESSION TAG SEQADV 8ZPN PRO R 330 UNP P61073 EXPRESSION TAG SEQADV 8ZPN LEU R 331 UNP P61073 EXPRESSION TAG SEQADV 8ZPN GLU R 332 UNP P61073 EXPRESSION TAG SEQADV 8ZPN VAL R 333 UNP P61073 EXPRESSION TAG SEQADV 8ZPN LEU R 334 UNP P61073 EXPRESSION TAG SEQADV 8ZPN PHE R 335 UNP P61073 EXPRESSION TAG SEQADV 8ZPN GLN R 336 UNP P61073 EXPRESSION TAG SEQADV 8ZPN GLY R 337 UNP P61073 EXPRESSION TAG SEQADV 8ZPN PRO R 338 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 339 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 340 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 341 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 342 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 343 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 344 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 345 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 346 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 347 UNP P61073 EXPRESSION TAG SEQADV 8ZPN HIS R 348 UNP P61073 EXPRESSION TAG SEQRES 1 R 486 MET LYS THR ILE ILE ALA LEU SER TYR ILE PHE CYS LEU SEQRES 2 R 486 VAL PHE ALA ASP TYR LYS ASP ASP ASP ASP LYS GLY SER SEQRES 3 R 486 ALA ASP LEU GLU ASP ASN TRP GLU THR LEU ASN ASP ASN SEQRES 4 R 486 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 5 R 486 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 6 R 486 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 7 R 486 PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE SEQRES 8 R 486 ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU SEQRES 9 R 486 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 10 R 486 GLU GLN LEU LYS THR THR ARG ASN ALA TYR ILE GLN LYS SEQRES 11 R 486 TYR LEU LEU VAL PRO ARG GLY SER MET GLU GLY ILE SER SEQRES 12 R 486 ILE TYR THR SER ASP ASN TYR THR GLU GLU MET GLY SER SEQRES 13 R 486 GLY ASP TYR ASP SER MET LYS GLU PRO CYS PHE ARG GLU SEQRES 14 R 486 GLU ASN ALA ASN PHE ASN LYS ILE PHE LEU PRO THR ILE SEQRES 15 R 486 TYR SER ILE ILE PHE LEU THR GLY ILE VAL GLY ASN GLY SEQRES 16 R 486 LEU VAL ILE LEU VAL MET GLY TYR GLN LYS LYS LEU ARG SEQRES 17 R 486 SER MET THR ASP LYS TYR ARG LEU HIS LEU SER VAL ALA SEQRES 18 R 486 ASP LEU LEU PHE VAL ILE THR LEU PRO PHE TRP ALA VAL SEQRES 19 R 486 ASP ALA VAL ALA ASN TRP TYR PHE GLY ASN PHE LEU CYS SEQRES 20 R 486 LYS ALA VAL HIS VAL ILE TYR THR VAL ASN LEU TYR SER SEQRES 21 R 486 SER VAL TRP ILE LEU ALA PHE ILE SER LEU ASP ARG TYR SEQRES 22 R 486 LEU ALA ILE VAL HIS ALA THR ASN SER GLN ARG PRO ARG SEQRES 23 R 486 LYS LEU LEU ALA GLU LYS VAL VAL TYR VAL GLY VAL TRP SEQRES 24 R 486 ILE PRO ALA LEU LEU LEU THR ILE PRO ASP PHE ILE PHE SEQRES 25 R 486 ALA ASN VAL SER GLU ALA ASP ASP ARG TYR ILE CYS ASP SEQRES 26 R 486 ARG PHE TYR PRO ASN ASP LEU TRP VAL VAL VAL PHE GLN SEQRES 27 R 486 PHE GLN HIS ILE MET VAL GLY LEU ILE LEU PRO GLY ILE SEQRES 28 R 486 VAL ILE LEU SER CYS TYR CYS ILE ILE ILE SER ARG LEU SEQRES 29 R 486 LYS SER VAL ARG LEU LEU SER GLY SER ARG GLU LYS ASP SEQRES 30 R 486 ARG ASN LEU ARG ARG ILE THR ARG PRO THR VAL ILE LEU SEQRES 31 R 486 ILE LEU ALA PHE PHE ALA CYS TRP LEU PRO TYR TYR ILE SEQRES 32 R 486 GLY ILE SER ILE ASP SER PHE ILE LEU LEU GLU ILE ILE SEQRES 33 R 486 LYS GLN GLY CYS GLU PHE GLU ASN THR VAL HIS LYS TRP SEQRES 34 R 486 ILE SER ILE THR GLU ALA LEU ALA PHE PHE HIS CYS CYS SEQRES 35 R 486 LEU ASN PRO ILE LEU TYR ALA PHE LEU GLY ALA LYS PHE SEQRES 36 R 486 LYS THR SER ALA GLN HIS ALA LEU THR SER GLY ARG PRO SEQRES 37 R 486 LEU GLU VAL LEU PHE GLN GLY PRO HIS HIS HIS HIS HIS SEQRES 38 R 486 HIS HIS HIS HIS HIS SEQRES 1 N 169 MET LEU LEU VAL ASN GLN SER HIS GLN GLY PHE ASN LYS SEQRES 2 N 169 GLU HIS THR SER LYS MET VAL SER ALA ILE VAL LEU TYR SEQRES 3 N 169 VAL LEU LEU ALA ALA ALA ALA HIS SER ALA PHE ALA MET SEQRES 4 N 169 ALA GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL SEQRES 5 N 169 GLN ALA GLY GLU SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 6 N 169 GLY THR ILE PHE ARG LEU TYR ASP MET GLY TRP TYR ARG SEQRES 7 N 169 ARG VAL SER GLY ASN GLN ARG GLU LEU VAL ALA SER ILE SEQRES 8 N 169 THR SER GLY GLY SER THR LYS TYR GLY ASP SER VAL LYS SEQRES 9 N 169 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 10 N 169 VAL TYR LEU GLN MET SER SER LEU LYS PRO GLU ASP THR SEQRES 11 N 169 ALA VAL TYR TYR CYS ASN ALA GLU TYR ARG THR GLY ILE SEQRES 12 N 169 TRP GLU GLU LEU LEU ASP GLY TRP GLY GLN GLY THR GLN SEQRES 13 N 169 VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS HIS HIS HET CLR R 401 28 HET VH6 R 402 36 HETNAM CLR CHOLESTEROL HETNAM VH6 PLERIXAFOR HETSYN VH6 1,1'-[1,4-PHENYLENEBIS(METHYLENE)]BIS(1,4,8,11- HETSYN 2 VH6 TETRAAZACYCLOTETRADECANE); AMD3100 FORMUL 3 CLR C27 H46 O FORMUL 4 VH6 C28 H54 N8 HELIX 1 AA1 ALA R 34 TYR R 65 1 32 HELIX 2 AA2 SER R 71 ALA R 100 1 30 HELIX 3 AA3 GLY R 105 HIS R 140 1 36 HELIX 4 AA4 GLN R 145 LYS R 154 1 10 HELIX 5 AA5 VAL R 155 LEU R 167 1 13 HELIX 6 AA6 THR R 168 PHE R 174 1 7 HELIX 7 AA7 ASN R 192 LYS R 227 1 36 HELIX 8 AA8 SER R 235 LEU R 275 1 41 HELIX 9 AA9 GLY R 281 PHE R 300 1 20 HELIX 10 AB1 PHE R 301 CYS R 303 5 3 HELIX 11 AB2 CYS R 304 LEU R 313 1 10 HELIX 12 AB3 LYS N 88 THR N 92 5 5 SHEET 1 AA1 2 ALA R 175 VAL R 177 0 SHEET 2 AA1 2 CYS R 186 ARG R 188 -1 O ASP R 187 N ASN R 176 SHEET 1 AA2 2 VAL N 4 LEU N 6 0 SHEET 2 AA2 2 ALA N 26 GLY N 28 -1 O SER N 27 N GLN N 5 SHEET 1 AA3 5 GLY N 12 VAL N 14 0 SHEET 2 AA3 5 THR N 117 VAL N 121 1 O GLN N 118 N GLY N 12 SHEET 3 AA3 5 ALA N 93 ARG N 102 -1 N TYR N 95 O THR N 117 SHEET 4 AA3 5 ARG N 32 ARG N 40 -1 N GLY N 37 O ASN N 98 SHEET 5 AA3 5 GLU N 48 THR N 54 -1 O GLU N 48 N ARG N 40 SHEET 1 AA4 4 GLY N 12 VAL N 14 0 SHEET 2 AA4 4 THR N 117 VAL N 121 1 O GLN N 118 N GLY N 12 SHEET 3 AA4 4 ALA N 93 ARG N 102 -1 N TYR N 95 O THR N 117 SHEET 4 AA4 4 LEU N 110 TRP N 113 -1 O LEU N 110 N TYR N 101 SHEET 1 AA5 3 ARG N 21 LEU N 22 0 SHEET 2 AA5 3 THR N 79 GLN N 83 -1 O LEU N 82 N LEU N 22 SHEET 3 AA5 3 THR N 70 ASP N 74 -1 N THR N 70 O GLN N 83 SSBOND 1 CYS R 109 CYS R 186 1555 1555 2.03 SSBOND 2 CYS N 24 CYS N 97 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000