data_9A00 _entry.id 9A00 _struct.entry_id 9A00 _struct.title 'Structure of the human myeloid-derived growth factor (hMYDGF) engaging the chicken KDEL receptor 2 (cKDELR2)' _struct.pdbx_structure_determination_methodology integrative # loop_ _audit_conform.dict_location _audit_conform.dict_name _audit_conform.dict_version https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ihm_ext.dic mmcif_ihm_ext.dic 1.27 http://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic mmcif_pdbx.dic 5.399 # # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB-Dev PDBDEV_00000036 PDBDEV_00000036 ? PDB 9A00 pdb_00009a00 10.2210/pdb9a00/pdb # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 9A00 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2019-10-21 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.version _software.type _software.location 1 HADDOCK "molecular docking" ? program http://haddock.science.uu.nl/services/HADDOCK/ # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI 1 'Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum' 'Nat. Commun.' 10 5612 ? 2019 31819058 '10.1038/s41467-019-13577-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal 1 'Bortnov V' 1 1 'Tonelli M' 2 1 'Lee W' 3 1 'Lin Z' 4 1 'Annis DS' 5 1 'Demerdash ON' 6 1 'Bateman A' 7 1 'Mitchell JC' 8 1 'Ge Y' 9 1 'Markley JL' 10 1 'Mosher DF' 11 # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bortnov V' 1 'Tonelli M' 2 'Lee W' 3 'Lin Z' 4 'Annis DS' 5 'Demerdash ON' 6 'Bateman A' 7 'Mitchell JC' 8 'Ge Y' 9 'Markley JL' 10 'Mosher DF' 11 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ILE n 1 4 PHE n 1 5 ARG n 1 6 LEU n 1 7 THR n 1 8 GLY n 1 9 ASP n 1 10 LEU n 1 11 SER n 1 12 HIS n 1 13 LEU n 1 14 ALA n 1 15 ALA n 1 16 ILE n 1 17 ILE n 1 18 ILE n 1 19 LEU n 1 20 LEU n 1 21 LEU n 1 22 LYS n 1 23 ILE n 1 24 TRP n 1 25 LYS n 1 26 SER n 1 27 ARG n 1 28 SER n 1 29 CYS n 1 30 ALA n 1 31 GLY n 1 32 ILE n 1 33 SER n 1 34 GLY n 1 35 LYS n 1 36 SER n 1 37 GLN n 1 38 LEU n 1 39 LEU n 1 40 PHE n 1 41 ALA n 1 42 LEU n 1 43 VAL n 1 44 PHE n 1 45 THR n 1 46 THR n 1 47 ARG n 1 48 TYR n 1 49 LEU n 1 50 ASP n 1 51 LEU n 1 52 PHE n 1 53 THR n 1 54 SER n 1 55 PHE n 1 56 ILE n 1 57 SER n 1 58 LEU n 1 59 TYR n 1 60 ASN n 1 61 THR n 1 62 SER n 1 63 MET n 1 64 LYS n 1 65 LEU n 1 66 ILE n 1 67 TYR n 1 68 ILE n 1 69 ALA n 1 70 CYS n 1 71 SER n 1 72 TYR n 1 73 ALA n 1 74 THR n 1 75 VAL n 1 76 TYR n 1 77 LEU n 1 78 ILE n 1 79 TYR n 1 80 MET n 1 81 LYS n 1 82 PHE n 1 83 LYS n 1 84 ALA n 1 85 THR n 1 86 TYR n 1 87 ASP n 1 88 GLY n 1 89 ASN n 1 90 HIS n 1 91 ASP n 1 92 THR n 1 93 PHE n 1 94 ARG n 1 95 VAL n 1 96 GLU n 1 97 PHE n 1 98 LEU n 1 99 ILE n 1 100 VAL n 1 101 PRO n 1 102 VAL n 1 103 GLY n 1 104 GLY n 1 105 LEU n 1 106 SER n 1 107 PHE n 1 108 LEU n 1 109 VAL n 1 110 ASN n 1 111 HIS n 1 112 ASP n 1 113 PHE n 1 114 SER n 1 115 PRO n 1 116 LEU n 1 117 GLU n 1 118 ILE n 1 119 LEU n 1 120 TRP n 1 121 THR n 1 122 PHE n 1 123 SER n 1 124 ILE n 1 125 TYR n 1 126 LEU n 1 127 GLU n 1 128 SER n 1 129 VAL n 1 130 ALA n 1 131 ILE n 1 132 LEU n 1 133 PRO n 1 134 GLN n 1 135 LEU n 1 136 PHE n 1 137 MET n 1 138 ILE n 1 139 SER n 1 140 LYS n 1 141 THR n 1 142 GLY n 1 143 GLU n 1 144 ALA n 1 145 GLU n 1 146 THR n 1 147 ILE n 1 148 THR n 1 149 THR n 1 150 HIS n 1 151 TYR n 1 152 LEU n 1 153 PHE n 1 154 PHE n 1 155 LEU n 1 156 GLY n 1 157 LEU n 1 158 TYR n 1 159 ARG n 1 160 ALA n 1 161 LEU n 1 162 TYR n 1 163 LEU n 1 164 VAL n 1 165 ASN n 1 166 TRP n 1 167 ILE n 1 168 TRP n 1 169 ARG n 1 170 TYR n 1 171 TYR n 1 172 PHE n 1 173 GLU n 1 174 GLY n 1 175 PHE n 1 176 PHE n 1 177 ASP n 1 178 LEU n 1 179 ILE n 1 180 ALA n 1 181 VAL n 1 182 VAL n 1 183 ALA n 1 184 GLY n 1 185 VAL n 1 186 VAL n 1 187 GLN n 1 188 THR n 1 189 VAL n 1 190 LEU n 1 191 TYR n 1 192 CYS n 1 193 ASP n 1 194 PHE n 1 195 PHE n 1 196 TYR n 1 197 LEU n 1 198 TYR n 1 199 VAL n 1 200 THR n 1 201 LYS n 1 202 VAL n 1 203 LEU n 1 204 LYS n 1 205 GLY n 1 206 LYS n 1 207 LYS n 2 1 VAL n 2 2 SER n 2 3 GLU n 2 4 PRO n 2 5 THR n 2 6 THR n 2 7 VAL n 2 8 ALA n 2 9 PHE n 2 10 ASP n 2 11 VAL n 2 12 ARG n 2 13 PRO n 2 14 GLY n 2 15 GLY n 2 16 VAL n 2 17 VAL n 2 18 HIS n 2 19 SER n 2 20 PHE n 2 21 SER n 2 22 HIS n 2 23 ASN n 2 24 VAL n 2 25 GLY n 2 26 PRO n 2 27 GLY n 2 28 ASP n 2 29 LYS n 2 30 TYR n 2 31 THR n 2 32 CYS n 2 33 MET n 2 34 PHE n 2 35 THR n 2 36 TYR n 2 37 ALA n 2 38 SER n 2 39 GLN n 2 40 GLY n 2 41 GLY n 2 42 THR n 2 43 ASN n 2 44 GLU n 2 45 GLN n 2 46 TRP n 2 47 GLN n 2 48 MET n 2 49 SER n 2 50 LEU n 2 51 GLY n 2 52 THR n 2 53 SER n 2 54 GLU n 2 55 ASP n 2 56 HIS n 2 57 GLN n 2 58 HIS n 2 59 PHE n 2 60 THR n 2 61 CYS n 2 62 THR n 2 63 ILE n 2 64 TRP n 2 65 ARG n 2 66 PRO n 2 67 GLN n 2 68 GLY n 2 69 LYS n 2 70 SER n 2 71 TYR n 2 72 LEU n 2 73 TYR n 2 74 PHE n 2 75 THR n 2 76 GLN n 2 77 PHE n 2 78 LYS n 2 79 ALA n 2 80 GLU n 2 81 VAL n 2 82 ARG n 2 83 GLY n 2 84 ALA n 2 85 GLU n 2 86 ILE n 2 87 GLU n 2 88 TYR n 2 89 ALA n 2 90 MET n 2 91 ALA n 2 92 TYR n 2 93 SER n 2 94 LYS n 2 95 ALA n 2 96 ALA n 2 97 PHE n 2 98 GLU n 2 99 ARG n 2 100 GLU n 2 101 SER n 2 102 ASP n 2 103 VAL n 2 104 PRO n 2 105 LEU n 2 106 LYS n 2 107 THR n 2 108 GLU n 2 109 GLU n 2 110 PHE n 2 111 GLU n 2 112 VAL n 2 113 THR n 2 114 LYS n 2 115 THR n 2 116 ALA n 2 117 VAL n 2 118 ALA n 2 119 HIS n 2 120 ARG n 2 121 PRO n 2 122 GLY n 2 123 ALA n 2 124 PHE n 2 125 LYS n 2 126 ALA n 2 127 GLU n 2 128 LEU n 2 129 SER n 2 130 LYS n 2 131 LEU n 2 132 VAL n 2 133 ILE n 2 134 VAL n 2 135 ALA n 2 136 LYS n 2 137 ALA n 2 138 SER n 2 139 ARG n 2 140 THR n 2 141 GLU n 2 142 LEU n # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ER lumen protein-retaining receptor 2' 23995.299 1 ? ? ? ? 2 polymer man 'Myeloid-derived growth factor' 15854.741 1 ? ? ? ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 UNP ERD22_CHICK Q5ZKX9 1 . . 2 2 UNP MYDGF_HUMAN Q969H8 32 . . # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 207 1 207 2 2 1 142 32 173 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 'polypeptide(L)' no no A ;MNIFRLTGDLSHLAAIIILLLKIWKSRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLIYM KFKATYDGNHDTFRVEFLIVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRA LYLVNWIWRYYFEGFFDLIAVVAGVVQTVLYCDFFYLYVTKVLKGKK ; ;MNIFRLTGDLSHLAAIIILLLKIWKSRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLIYM KFKATYDGNHDTFRVEFLIVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRA LYLVNWIWRYYFEGFFDLIAVVAGVVQTVLYCDFFYLYVTKVLKGKK ; 2 'polypeptide(L)' no no B ;VSEPTTVAFDVRPGGVVHSFSHNVGPGDKYTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAE VRGAEIEYAMAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL ; ;VSEPTTVAFDVRPGGVVHSFSHNVGPGDKYTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAE VRGAEIEYAMAYSKAAFERESDVPLKTEEFEVTKTAVAHRPGAFKAELSKLVIVAKASRTEL ; # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 TRP 24 24 24 TRP TRP A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 MET 63 63 63 MET MET A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 CYS 70 70 70 CYS CYS A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 HIS 111 111 111 HIS HIS A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 TRP 120 120 120 TRP TRP A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 GLN 134 134 134 GLN GLN A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 MET 137 137 137 MET MET A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 HIS 150 150 150 HIS HIS A . n A 1 151 TYR 151 151 151 TYR TYR A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 PHE 154 154 154 PHE PHE A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 TYR 162 162 162 TYR TYR A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 ASN 165 165 165 ASN ASN A . n A 1 166 TRP 166 166 166 TRP TRP A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 TRP 168 168 168 TRP TRP A . n A 1 169 ARG 169 169 169 ARG ARG A . n A 1 170 TYR 170 170 170 TYR TYR A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 VAL 182 182 182 VAL VAL A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 GLY 184 184 184 GLY GLY A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 GLN 187 187 187 GLN GLN A . n A 1 188 THR 188 188 188 THR THR A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 TYR 191 191 191 TYR TYR A . n A 1 192 CYS 192 192 192 CYS CYS A . n A 1 193 ASP 193 193 193 ASP ASP A . n A 1 194 PHE 194 194 194 PHE PHE A . n A 1 195 PHE 195 195 195 PHE PHE A . n A 1 196 TYR 196 196 196 TYR TYR A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 TYR 198 198 198 TYR TYR A . n A 1 199 VAL 199 199 199 VAL VAL A . n A 1 200 THR 200 200 200 THR THR A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 VAL 202 202 202 VAL VAL A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 LYS 204 204 204 LYS LYS A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 LYS 206 206 206 LYS LYS A . n A 1 207 LYS 207 207 207 LYS LYS A . n B 2 1 VAL 1 32 32 VAL VAL B . n B 2 2 SER 2 33 33 SER SER B . n B 2 3 GLU 3 34 34 GLU GLU B . n B 2 4 PRO 4 35 35 PRO PRO B . n B 2 5 THR 5 36 36 THR THR B . n B 2 6 THR 6 37 37 THR THR B . n B 2 7 VAL 7 38 38 VAL VAL B . n B 2 8 ALA 8 39 39 ALA ALA B . n B 2 9 PHE 9 40 40 PHE PHE B . n B 2 10 ASP 10 41 41 ASP ASP B . n B 2 11 VAL 11 42 42 VAL VAL B . n B 2 12 ARG 12 43 43 ARG ARG B . n B 2 13 PRO 13 44 44 PRO PRO B . n B 2 14 GLY 14 45 45 GLY GLY B . n B 2 15 GLY 15 46 46 GLY GLY B . n B 2 16 VAL 16 47 47 VAL VAL B . n B 2 17 VAL 17 48 48 VAL VAL B . n B 2 18 HIS 18 49 49 HIS HIS B . n B 2 19 SER 19 50 50 SER SER B . n B 2 20 PHE 20 51 51 PHE PHE B . n B 2 21 SER 21 52 52 SER SER B . n B 2 22 HIS 22 53 53 HIS HIS B . n B 2 23 ASN 23 54 54 ASN ASN B . n B 2 24 VAL 24 55 55 VAL VAL B . n B 2 25 GLY 25 56 56 GLY GLY B . n B 2 26 PRO 26 57 57 PRO PRO B . n B 2 27 GLY 27 58 58 GLY GLY B . n B 2 28 ASP 28 59 59 ASP ASP B . n B 2 29 LYS 29 60 60 LYS LYS B . n B 2 30 TYR 30 61 61 TYR TYR B . n B 2 31 THR 31 62 62 THR THR B . n B 2 32 CYS 32 63 63 CYS CYS B . n B 2 33 MET 33 64 64 MET MET B . n B 2 34 PHE 34 65 65 PHE PHE B . n B 2 35 THR 35 66 66 THR THR B . n B 2 36 TYR 36 67 67 TYR TYR B . n B 2 37 ALA 37 68 68 ALA ALA B . n B 2 38 SER 38 69 69 SER SER B . n B 2 39 GLN 39 70 70 GLN GLN B . n B 2 40 GLY 40 71 71 GLY GLY B . n B 2 41 GLY 41 72 72 GLY GLY B . n B 2 42 THR 42 73 73 THR THR B . n B 2 43 ASN 43 74 74 ASN ASN B . n B 2 44 GLU 44 75 75 GLU GLU B . n B 2 45 GLN 45 76 76 GLN GLN B . n B 2 46 TRP 46 77 77 TRP TRP B . n B 2 47 GLN 47 78 78 GLN GLN B . n B 2 48 MET 48 79 79 MET MET B . n B 2 49 SER 49 80 80 SER SER B . n B 2 50 LEU 50 81 81 LEU LEU B . n B 2 51 GLY 51 82 82 GLY GLY B . n B 2 52 THR 52 83 83 THR THR B . n B 2 53 SER 53 84 84 SER SER B . n B 2 54 GLU 54 85 85 GLU GLU B . n B 2 55 ASP 55 86 86 ASP ASP B . n B 2 56 HIS 56 87 87 HIS HIS B . n B 2 57 GLN 57 88 88 GLN GLN B . n B 2 58 HIS 58 89 89 HIS HIS B . n B 2 59 PHE 59 90 90 PHE PHE B . n B 2 60 THR 60 91 91 THR THR B . n B 2 61 CYS 61 92 92 CYS CYS B . n B 2 62 THR 62 93 93 THR THR B . n B 2 63 ILE 63 94 94 ILE ILE B . n B 2 64 TRP 64 95 95 TRP TRP B . n B 2 65 ARG 65 96 96 ARG ARG B . n B 2 66 PRO 66 97 97 PRO PRO B . n B 2 67 GLN 67 98 98 GLN GLN B . n B 2 68 GLY 68 99 99 GLY GLY B . n B 2 69 LYS 69 100 100 LYS LYS B . n B 2 70 SER 70 101 101 SER SER B . n B 2 71 TYR 71 102 102 TYR TYR B . n B 2 72 LEU 72 103 103 LEU LEU B . n B 2 73 TYR 73 104 104 TYR TYR B . n B 2 74 PHE 74 105 105 PHE PHE B . n B 2 75 THR 75 106 106 THR THR B . n B 2 76 GLN 76 107 107 GLN GLN B . n B 2 77 PHE 77 108 108 PHE PHE B . n B 2 78 LYS 78 109 109 LYS LYS B . n B 2 79 ALA 79 110 110 ALA ALA B . n B 2 80 GLU 80 111 111 GLU GLU B . n B 2 81 VAL 81 112 112 VAL VAL B . n B 2 82 ARG 82 113 113 ARG ARG B . n B 2 83 GLY 83 114 114 GLY GLY B . n B 2 84 ALA 84 115 115 ALA ALA B . n B 2 85 GLU 85 116 116 GLU GLU B . n B 2 86 ILE 86 117 117 ILE ILE B . n B 2 87 GLU 87 118 118 GLU GLU B . n B 2 88 TYR 88 119 119 TYR TYR B . n B 2 89 ALA 89 120 120 ALA ALA B . n B 2 90 MET 90 121 121 MET MET B . n B 2 91 ALA 91 122 122 ALA ALA B . n B 2 92 TYR 92 123 123 TYR TYR B . n B 2 93 SER 93 124 124 SER SER B . n B 2 94 LYS 94 125 125 LYS LYS B . n B 2 95 ALA 95 126 126 ALA ALA B . n B 2 96 ALA 96 127 127 ALA ALA B . n B 2 97 PHE 97 128 128 PHE PHE B . n B 2 98 GLU 98 129 129 GLU GLU B . n B 2 99 ARG 99 130 130 ARG ARG B . n B 2 100 GLU 100 131 131 GLU GLU B . n B 2 101 SER 101 132 132 SER SER B . n B 2 102 ASP 102 133 133 ASP ASP B . n B 2 103 VAL 103 134 134 VAL VAL B . n B 2 104 PRO 104 135 135 PRO PRO B . n B 2 105 LEU 105 136 136 LEU LEU B . n B 2 106 LYS 106 137 137 LYS LYS B . n B 2 107 THR 107 138 138 THR THR B . n B 2 108 GLU 108 139 139 GLU GLU B . n B 2 109 GLU 109 140 140 GLU GLU B . n B 2 110 PHE 110 141 141 PHE PHE B . n B 2 111 GLU 111 142 142 GLU GLU B . n B 2 112 VAL 112 143 143 VAL VAL B . n B 2 113 THR 113 144 144 THR THR B . n B 2 114 LYS 114 145 145 LYS LYS B . n B 2 115 THR 115 146 146 THR THR B . n B 2 116 ALA 116 147 147 ALA ALA B . n B 2 117 VAL 117 148 148 VAL VAL B . n B 2 118 ALA 118 149 149 ALA ALA B . n B 2 119 HIS 119 150 150 HIS HIS B . n B 2 120 ARG 120 151 151 ARG ARG B . n B 2 121 PRO 121 152 152 PRO PRO B . n B 2 122 GLY 122 153 153 GLY GLY B . n B 2 123 ALA 123 154 154 ALA ALA B . n B 2 124 PHE 124 155 155 PHE PHE B . n B 2 125 LYS 125 156 156 LYS LYS B . n B 2 126 ALA 126 157 157 ALA ALA B . n B 2 127 GLU 127 158 158 GLU GLU B . n B 2 128 LEU 128 159 159 LEU LEU B . n B 2 129 SER 129 160 160 SER SER B . n B 2 130 LYS 130 161 161 LYS LYS B . n B 2 131 LEU 131 162 162 LEU LEU B . n B 2 132 VAL 132 163 163 VAL VAL B . n B 2 133 ILE 133 164 164 ILE ILE B . n B 2 134 VAL 134 165 165 VAL VAL B . n B 2 135 ALA 135 166 166 ALA ALA B . n B 2 136 LYS 136 167 167 LYS LYS B . n B 2 137 ALA 137 168 168 ALA ALA B . n B 2 138 SER 138 169 169 SER SER B . n B 2 139 ARG 139 170 170 ARG ARG B . n B 2 140 THR 140 171 171 THR THR B . n B 2 141 GLU 141 172 172 GLU GLU B . n B 2 142 LEU 142 173 173 LEU LEU B . n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA "L-peptide linking" y ALANINE ? "C3 H7 N O2" 89.093 ARG "L-peptide linking" y ARGININE ? "C6 H15 N4 O2 1" 175.209 ASN "L-peptide linking" y ASPARAGINE ? "C4 H8 N2 O3" 132.118 ASP "L-peptide linking" y "ASPARTIC ACID" ? "C4 H7 N O4" 133.103 CYS "L-peptide linking" y CYSTEINE ? "C3 H7 N O2 S" 121.158 GLN "L-peptide linking" y GLUTAMINE ? "C5 H10 N2 O3" 146.144 GLU "L-peptide linking" y "GLUTAMIC ACID" ? "C5 H9 N O4" 147.129 GLY "peptide linking" y GLYCINE ? "C2 H5 N O2" 75.067 HIS "L-peptide linking" y HISTIDINE ? "C6 H10 N3 O2 1" 156.162 ILE "L-peptide linking" y ISOLEUCINE ? "C6 H13 N O2" 131.173 LEU "L-peptide linking" y LEUCINE ? "C6 H13 N O2" 131.173 LYS "L-peptide linking" y LYSINE ? "C6 H15 N2 O2 1" 147.195 MET "L-peptide linking" y METHIONINE ? "C5 H11 N O2 S" 149.211 PHE "L-peptide linking" y PHENYLALANINE ? "C9 H11 N O2" 165.189 PRO "L-peptide linking" y PROLINE ? "C5 H9 N O2" 115.130 SER "L-peptide linking" y SERINE ? "C3 H7 N O3" 105.093 THR "L-peptide linking" y THREONINE ? "C4 H9 N O3" 119.119 TRP "L-peptide linking" y TRYPTOPHAN ? "C11 H12 N2 O2" 204.225 TYR "L-peptide linking" y TYROSINE ? "C9 H11 N O3" 181.189 VAL "L-peptide linking" y VALINE ? "C5 H11 N O2" 117.146 # loop_ _struct_asym.id _struct_asym.pdbx_PDB_id _struct_asym.pdbx_alt_id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_type _struct_asym.pdbx_order _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A A A N ATOMP 1 N 1 ? B B B N ATOMP 2 N 2 ? # loop_ _ihm_entity_poly_segment.id _ihm_entity_poly_segment.entity_id _ihm_entity_poly_segment.seq_id_begin _ihm_entity_poly_segment.seq_id_end _ihm_entity_poly_segment.comp_id_begin _ihm_entity_poly_segment.comp_id_end 1 1 1 207 MET LYS 2 2 1 142 VAL LEU # loop_ _ihm_struct_assembly.id _ihm_struct_assembly.name _ihm_struct_assembly.description 1 'Complete assembly' ;The structure of the hMYDGF and cKDELR2 complex generated by HADDOCK using restraints derived from the interface of the experimentally solved complex between cKDELR2 and the endoplasmic reticulum (ER) retention sequence (ERS)-containing peptide TAEKDEL. ; # loop_ _ihm_struct_assembly_details.id _ihm_struct_assembly_details.assembly_id _ihm_struct_assembly_details.parent_assembly_id _ihm_struct_assembly_details.entity_description _ihm_struct_assembly_details.entity_id _ihm_struct_assembly_details.asym_id _ihm_struct_assembly_details.entity_poly_segment_id 1 1 1 ? 1 A 1 2 1 1 ? 2 B 2 # loop_ _ihm_dataset_list.id _ihm_dataset_list.data_type _ihm_dataset_list.database_hosted _ihm_dataset_list.details 1 'Experimental model' YES . 2 'Experimental model' YES . # loop_ _ihm_dataset_group.id _ihm_dataset_group.name _ihm_dataset_group.application _ihm_dataset_group.details 1 . . . # loop_ _ihm_dataset_group_link.group_id _ihm_dataset_group_link.dataset_list_id 1 1 1 2 # loop_ _ihm_dataset_related_db_reference.id _ihm_dataset_related_db_reference.dataset_list_id _ihm_dataset_related_db_reference.db_name _ihm_dataset_related_db_reference.accession_code _ihm_dataset_related_db_reference.version _ihm_dataset_related_db_reference.details 1 1 PDB 6O6W . . 2 2 PDB 6I6H . . # loop_ _ihm_model_representation.id _ihm_model_representation.name _ihm_model_representation.details 1 . . # loop_ _ihm_model_representation_details.id _ihm_model_representation_details.representation_id _ihm_model_representation_details.entity_id _ihm_model_representation_details.entity_description _ihm_model_representation_details.entity_asym_id _ihm_model_representation_details.entity_poly_segment_id _ihm_model_representation_details.model_object_primitive _ihm_model_representation_details.starting_model_id _ihm_model_representation_details.model_mode _ihm_model_representation_details.model_granularity _ihm_model_representation_details.model_object_count 1 1 1 ? A 1 atomistic 1 rigid by-atom . 2 1 2 ? B 2 atomistic 2 rigid by-atom . # loop_ _ihm_starting_model_details.starting_model_id _ihm_starting_model_details.entity_id _ihm_starting_model_details.entity_description _ihm_starting_model_details.asym_id _ihm_starting_model_details.entity_poly_segment_id _ihm_starting_model_details.starting_model_source _ihm_starting_model_details.starting_model_auth_asym_id _ihm_starting_model_details.starting_model_sequence_offset _ihm_starting_model_details.dataset_list_id 1 1 ? A 1 'experimental model' A 0 2 2 2 ? B 2 'experimental model' A -6 1 # loop_ _ihm_modeling_protocol.id _ihm_modeling_protocol.protocol_name _ihm_modeling_protocol.num_steps 1 'HADDOCK modeling' . # loop_ _ihm_modeling_protocol_details.id _ihm_modeling_protocol_details.protocol_id _ihm_modeling_protocol_details.step_id _ihm_modeling_protocol_details.struct_assembly_id _ihm_modeling_protocol_details.dataset_group_id _ihm_modeling_protocol_details.struct_assembly_description _ihm_modeling_protocol_details.step_name _ihm_modeling_protocol_details.step_method _ihm_modeling_protocol_details.num_models_begin _ihm_modeling_protocol_details.num_models_end _ihm_modeling_protocol_details.multi_scale_flag _ihm_modeling_protocol_details.multi_state_flag _ihm_modeling_protocol_details.ordered_flag _ihm_modeling_protocol_details.software_id _ihm_modeling_protocol_details.script_file_id 1 1 1 1 1 ? ? ? ? ? NO NO NO 1 ? # loop_ _ihm_model_list.model_id _ihm_model_list.model_name _ihm_model_list.assembly_id _ihm_model_list.protocol_id _ihm_model_list.representation_id 1 'Cluster 1 representative' 1 1 1 2 'Cluster 2 representative' 1 1 1 # loop_ _ihm_model_group.id _ihm_model_group.name _ihm_model_group.details 1 'Cluster 1' . 2 'Cluster 2' . # loop_ _ihm_model_group_link.group_id _ihm_model_group_link.model_id 1 1 2 2 # loop_ _ihm_feature_list.feature_id _ihm_feature_list.feature_type _ihm_feature_list.entity_type 1 residue polymer 2 residue polymer 3 residue polymer 4 residue polymer 5 residue polymer 6 residue polymer 7 residue polymer 8 residue polymer 9 residue polymer 10 residue polymer 11 residue polymer 12 residue polymer 13 residue polymer # loop_ _ihm_poly_residue_feature.ordinal_id _ihm_poly_residue_feature.feature_id _ihm_poly_residue_feature.entity_id _ihm_poly_residue_feature.asym_id _ihm_poly_residue_feature.seq_id_begin _ihm_poly_residue_feature.comp_id_begin _ihm_poly_residue_feature.seq_id_end _ihm_poly_residue_feature.comp_id_end _ihm_poly_residue_feature.interface_residue_flag 1 1 2 B 139 ARG 139 ARG YES 2 2 2 B 140 THR 140 THR YES 3 3 2 B 141 GLU 141 GLU YES 4 4 2 B 142 LEU 142 LEU YES 5 5 1 A 5 ARG 5 ARG YES 6 6 1 A 47 ARG 47 ARG YES 7 7 1 A 48 TYR 48 TYR YES 8 8 1 A 117 GLU 117 GLU YES 9 9 1 A 159 ARG 159 ARG YES 10 10 1 A 162 TYR 162 TYR YES 11 11 1 A 165 ASN 165 ASN YES 12 12 1 A 166 TRP 166 TRP YES 13 13 1 A 169 ARG 169 ARG YES # loop_ _ihm_interface_residue_feature.ordinal_id _ihm_interface_residue_feature.feature_id _ihm_interface_residue_feature.binding_partner_entity_id _ihm_interface_residue_feature.binding_partner_asym_id _ihm_interface_residue_feature.dataset_list_id _ihm_interface_residue_feature.details 1 1 1 A 2 . 2 2 1 A 2 . 3 3 1 A 2 . 4 4 1 A 2 . 5 5 2 B 2 . 6 6 2 B 2 . 7 7 2 B 2 . 8 8 2 B 2 . 9 9 2 B 2 . 10 10 2 B 2 . 11 11 2 B 2 . 12 12 2 B 2 . 13 13 2 B 2 . # loop_ _ihm_derived_distance_restraint.id _ihm_derived_distance_restraint.group_id _ihm_derived_distance_restraint.feature_id_1 _ihm_derived_distance_restraint.feature_id_2 _ihm_derived_distance_restraint.group_conditionality _ihm_derived_distance_restraint.restraint_type _ihm_derived_distance_restraint.distance_upper_limit _ihm_derived_distance_restraint.random_exclusion_fraction _ihm_derived_distance_restraint.dataset_list_id 1 1 1 5 'ANY' 'upper bound' 3.0 0.0 . 2 1 1 6 'ANY' 'upper bound' 3.0 0.0 . 3 1 1 7 'ANY' 'upper bound' 3.0 0.0 . 4 1 1 8 'ANY' 'upper bound' 3.0 0.0 . 5 1 1 9 'ANY' 'upper bound' 3.0 0.0 . 6 1 1 10 'ANY' 'upper bound' 3.0 0.0 . 7 1 1 11 'ANY' 'upper bound' 3.0 0.0 . 8 1 1 12 'ANY' 'upper bound' 3.0 0.0 . 9 1 1 13 'ANY' 'upper bound' 3.0 0.0 . 10 2 2 5 'ANY' 'upper bound' 3.0 0.0 . 11 2 2 6 'ANY' 'upper bound' 3.0 0.0 . 12 2 2 7 'ANY' 'upper bound' 3.0 0.0 . 13 2 2 8 'ANY' 'upper bound' 3.0 0.0 . 14 2 2 9 'ANY' 'upper bound' 3.0 0.0 . 15 2 2 10 'ANY' 'upper bound' 3.0 0.0 . 16 2 2 11 'ANY' 'upper bound' 3.0 0.0 . 17 2 2 12 'ANY' 'upper bound' 3.0 0.0 . 18 2 2 13 'ANY' 'upper bound' 3.0 0.0 . 19 3 3 5 'ANY' 'upper bound' 3.0 0.0 . 20 3 3 6 'ANY' 'upper bound' 3.0 0.0 . 21 3 3 7 'ANY' 'upper bound' 3.0 0.0 . 22 3 3 8 'ANY' 'upper bound' 3.0 0.0 . 23 3 3 9 'ANY' 'upper bound' 3.0 0.0 . 24 3 3 10 'ANY' 'upper bound' 3.0 0.0 . 25 3 3 11 'ANY' 'upper bound' 3.0 0.0 . 26 3 3 12 'ANY' 'upper bound' 3.0 0.0 . 27 3 3 13 'ANY' 'upper bound' 3.0 0.0 . 28 4 4 5 'ANY' 'upper bound' 3.0 0.0 . 29 4 4 6 'ANY' 'upper bound' 3.0 0.0 . 30 4 4 7 'ANY' 'upper bound' 3.0 0.0 . 31 4 4 8 'ANY' 'upper bound' 3.0 0.0 . 32 4 4 9 'ANY' 'upper bound' 3.0 0.0 . 33 4 4 10 'ANY' 'upper bound' 3.0 0.0 . 34 4 4 11 'ANY' 'upper bound' 3.0 0.0 . 35 4 4 12 'ANY' 'upper bound' 3.0 0.0 . 36 4 4 13 'ANY' 'upper bound' 3.0 0.0 . # loop_ _atom_type.symbol C H N O S # loop_ #