data_9A14 _entry.id 9A14 _struct.entry_id 9A14 _struct.title 'Structure of N4BP1 CUE domain from NMR chemical shifts' _struct.pdbx_structure_determination_methodology integrative # # loop_ _audit_conform.dict_location _audit_conform.dict_name _audit_conform.dict_version https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ihm_ext.dic mmcif_ihm_ext.dic 1.26 http://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic mmcif_pdbx.dic 5.395 # # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB-Dev PDBDEV_00000076 PDBDEV_00000076 ? PDB 9A14 pdb_00009a14 10.2210/pdb9a14/pdb # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 9A14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2020-12-07 # # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-07-21 # # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.description _software.version _software.type _software.location 1 CS-ROSETTA 'model building' . . program https://csrosetta.bmrb.wisc.edu/submit # # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI 1 "N4BP1 functions as a dimerization-dependent linear ubiquitin reader which regulates TNF signalling" "Cell Death Discov" 10 183 ? 2024 38643192 10.1038/s41420-024-01913-8 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal 1 'Kliza, K.W.' 1 1 'Song, W.' 2 1 'Pinzuti, I.' 3 1 'Schaubeck, S.' 4 1 'Kunzelmann, S.' 5 1 'Kuntin, D.' 6 1 'Fornili, A.' 7 1 'Pandini, A.' 8 1 'Hofmann, K.' 9 1 'Garnett, J.A.' 10 1 'Stieglitz, B.' 11 1 'Husnjak, K.' 12 # # loop_ _audit_author.name _audit_author.pdbx_ordinal "Song W" 1 "Garnett J" 2 "Stieglitz B" 3 # # loop_ _chem_comp.id _chem_comp.type _chem_comp.name _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' ALANINE 'C3 H7 N O2' 89.094 ARG 'L-peptide linking' ARGININE 'C6 H15 N4 O2 1' 175.212 ASN 'L-peptide linking' ASPARAGINE 'C4 H8 N2 O3' 132.119 ASP 'L-peptide linking' 'ASPARTIC ACID' 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' GLUTAMINE 'C5 H10 N2 O3' 146.146 GLU 'L-peptide linking' 'GLUTAMIC ACID' 'C5 H9 N O4' 147.130 HIS 'L-peptide linking' HISTIDINE 'C6 H10 N3 O2 1' 156.165 ILE 'L-peptide linking' ISOLEUCINE 'C6 H13 N O2' 131.175 LEU 'L-peptide linking' LEUCINE 'C6 H13 N O2' 131.175 LYS 'L-peptide linking' LYSINE 'C6 H15 N2 O2 1' 147.198 MET 'L-peptide linking' METHIONINE 'C5 H11 N O2 S' 149.208 PHE 'L-peptide linking' PHENYLALANINE 'C9 H11 N O2' 165.192 PRO 'L-peptide linking' PROLINE 'C5 H9 N O2' 115.132 SER 'L-peptide linking' SERINE 'C3 H7 N O3' 105.093 THR 'L-peptide linking' THREONINE 'C4 H9 N O3' 119.120 TYR 'L-peptide linking' TYROSINE 'C9 H11 N O3' 181.191 VAL 'L-peptide linking' VALINE 'C5 H11 N O2' 117.148 # # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.details 1 polymer man "N4BP1 CUE domain" 5762.484 1 ? # # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 UNP N4BP1_MOUSE Q6A037 850 . . # # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 44 850 893 # # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 polypeptide(L) no no A ETSELREALLKIFPDSEQKLKIDQILAAHPYMKDLNALSALVLD ETSELREALLKIFPDSEQKLKIDQILAAHPYMKDLNALSALVLD # # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU . 1 2 THR . 1 3 SER . 1 4 GLU . 1 5 LEU . 1 6 ARG . 1 7 GLU . 1 8 ALA . 1 9 LEU . 1 10 LEU . 1 11 LYS . 1 12 ILE . 1 13 PHE . 1 14 PRO . 1 15 ASP . 1 16 SER . 1 17 GLU . 1 18 GLN . 1 19 LYS . 1 20 LEU . 1 21 LYS . 1 22 ILE . 1 23 ASP . 1 24 GLN . 1 25 ILE . 1 26 LEU . 1 27 ALA . 1 28 ALA . 1 29 HIS . 1 30 PRO . 1 31 TYR . 1 32 MET . 1 33 LYS . 1 34 ASP . 1 35 LEU . 1 36 ASN . 1 37 ALA . 1 38 LEU . 1 39 SER . 1 40 ALA . 1 41 LEU . 1 42 VAL . 1 43 LEU . 1 44 ASP . # # loop_ _ihm_entity_poly_segment.id _ihm_entity_poly_segment.entity_id _ihm_entity_poly_segment.seq_id_begin _ihm_entity_poly_segment.seq_id_end _ihm_entity_poly_segment.comp_id_begin _ihm_entity_poly_segment.comp_id_end 1 1 1 44 GLU ASP # # loop_ _struct_asym.id _struct_asym.entity_id _struct_asym.details A 1 ? # # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id A 1 1 GLU 1 1 GLU GLU A A 1 2 THR 2 2 THR THR A A 1 3 SER 3 3 SER SER A A 1 4 GLU 4 4 GLU GLU A A 1 5 LEU 5 5 LEU LEU A A 1 6 ARG 6 6 ARG ARG A A 1 7 GLU 7 7 GLU GLU A A 1 8 ALA 8 8 ALA ALA A A 1 9 LEU 9 9 LEU LEU A A 1 10 LEU 10 10 LEU LEU A A 1 11 LYS 11 11 LYS LYS A A 1 12 ILE 12 12 ILE ILE A A 1 13 PHE 13 13 PHE PHE A A 1 14 PRO 14 14 PRO PRO A A 1 15 ASP 15 15 ASP ASP A A 1 16 SER 16 16 SER SER A A 1 17 GLU 17 17 GLU GLU A A 1 18 GLN 18 18 GLN GLN A A 1 19 LYS 19 19 LYS LYS A A 1 20 LEU 20 20 LEU LEU A A 1 21 LYS 21 21 LYS LYS A A 1 22 ILE 22 22 ILE ILE A A 1 23 ASP 23 23 ASP ASP A A 1 24 GLN 24 24 GLN GLN A A 1 25 ILE 25 25 ILE ILE A A 1 26 LEU 26 26 LEU LEU A A 1 27 ALA 27 27 ALA ALA A A 1 28 ALA 28 28 ALA ALA A A 1 29 HIS 29 29 HIS HIS A A 1 30 PRO 30 30 PRO PRO A A 1 31 TYR 31 31 TYR TYR A A 1 32 MET 32 32 MET MET A A 1 33 LYS 33 33 LYS LYS A A 1 34 ASP 34 34 ASP ASP A A 1 35 LEU 35 35 LEU LEU A A 1 36 ASN 36 36 ASN ASN A A 1 37 ALA 37 37 ALA ALA A A 1 38 LEU 38 38 LEU LEU A A 1 39 SER 39 39 SER SER A A 1 40 ALA 40 40 ALA ALA A A 1 41 LEU 41 41 LEU LEU A A 1 42 VAL 42 42 VAL VAL A A 1 43 LEU 43 43 LEU LEU A A 1 44 ASP 44 44 ASP ASP A # # loop_ _ihm_struct_assembly.id _ihm_struct_assembly.name _ihm_struct_assembly.description 1 'Complete assembly' ; Structure of N4BP1 CUE domain determined with CS-ROSETTA using NMR chemical shifts. ; # # loop_ _ihm_struct_assembly_details.id _ihm_struct_assembly_details.assembly_id _ihm_struct_assembly_details.parent_assembly_id _ihm_struct_assembly_details.entity_description _ihm_struct_assembly_details.entity_id _ihm_struct_assembly_details.asym_id _ihm_struct_assembly_details.entity_poly_segment_id 1 1 1 ? 1 A 1 # # loop_ _ihm_dataset_list.id _ihm_dataset_list.data_type _ihm_dataset_list.database_hosted _ihm_dataset_list.details 1 "NMR data" YES "NMR backbone assignments" # # loop_ _ihm_dataset_group.id _ihm_dataset_group.name _ihm_dataset_group.application _ihm_dataset_group.details 1 . . . # # loop_ _ihm_dataset_group_link.group_id _ihm_dataset_group_link.dataset_list_id 1 1 # # loop_ _ihm_dataset_related_db_reference.id _ihm_dataset_related_db_reference.dataset_list_id _ihm_dataset_related_db_reference.db_name _ihm_dataset_related_db_reference.accession_code _ihm_dataset_related_db_reference.version _ihm_dataset_related_db_reference.details 1 1 BMRB 50688 . "Solution NMR structure of mouse N4BP1 CUE domain" # # loop_ _ihm_model_representation.id _ihm_model_representation.name _ihm_model_representation.details 1 . . # # loop_ _ihm_model_representation_details.id _ihm_model_representation_details.representation_id _ihm_model_representation_details.entity_id _ihm_model_representation_details.entity_description _ihm_model_representation_details.entity_asym_id _ihm_model_representation_details.entity_poly_segment_id _ihm_model_representation_details.model_object_primitive _ihm_model_representation_details.starting_model_id _ihm_model_representation_details.model_mode _ihm_model_representation_details.model_granularity _ihm_model_representation_details.model_object_count _ihm_model_representation_details.description 1 1 1 ? A 1 atomistic . flexible by-atom . . # # loop_ _ihm_modeling_protocol.id _ihm_modeling_protocol.protocol_name _ihm_modeling_protocol.num_steps 1 modeling 1 # # loop_ _ihm_modeling_protocol_details.id _ihm_modeling_protocol_details.protocol_id _ihm_modeling_protocol_details.step_id _ihm_modeling_protocol_details.struct_assembly_id _ihm_modeling_protocol_details.dataset_group_id _ihm_modeling_protocol_details.struct_assembly_description _ihm_modeling_protocol_details.step_name _ihm_modeling_protocol_details.step_method _ihm_modeling_protocol_details.num_models_begin _ihm_modeling_protocol_details.num_models_end _ihm_modeling_protocol_details.multi_scale_flag _ihm_modeling_protocol_details.multi_state_flag _ihm_modeling_protocol_details.ordered_flag _ihm_modeling_protocol_details.ensemble_flag _ihm_modeling_protocol_details.software_id _ihm_modeling_protocol_details.script_file_id _ihm_modeling_protocol_details.description 1 1 1 1 1 ? 'CS-ROSETTA modeling' . 0 20000 NO NO NO YES 1 . . # # loop_ _ihm_model_list.model_id _ihm_model_list.model_name _ihm_model_list.assembly_id _ihm_model_list.protocol_id _ihm_model_list.representation_id 1 S_08713 1 1 1 2 S_06192 1 1 1 3 S_15902 1 1 1 4 S_02507 1 1 1 5 S_08797 1 1 1 6 S_19499 1 1 1 7 S_19128 1 1 1 8 S_16128 1 1 1 9 S_00688 1 1 1 10 S_07018 1 1 1 # # loop_ _ihm_model_group.id _ihm_model_group.name _ihm_model_group.details 1 ensemble1 . # # loop_ _ihm_model_group_link.group_id _ihm_model_group_link.model_id 1 1 1 2 1 3 1 4 1 5 1 6 1 7 1 8 1 9 1 10 # # loop_ # # loop_ _atom_type.symbol C H N O S #