data_9A1Q # _entry.id 9A1Q # loop_ _atom_type.symbol C H N O S # loop_ _audit_author.name _audit_author.pdbx_ordinal "Zamel J" 1 "Chen J" 2 "Zaer S" 3 "Harris PD" 4 "Drori P" 5 "Lebendiker M" 6 "Kalisman N" 7 "Dokholyan NV" 8 "Lerner E" 9 # loop_ _audit_conform.dict_location _audit_conform.dict_name _audit_conform.dict_version https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ihm_ext.dic mmcif_ihm_ext.dic 1.26 http://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic mmcif_pdbx.dic 5.395 # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB-Dev PDBDEV_00000098 PDBDEV_00000098 ? PDB 9A1Q pdb_00009a1q 10.2210/pdb9a1q/pdb # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 9A1Q _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2021-12-15 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-02-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.type "C3 H7 N O2" 89.094 ALA . ALANINE . "L-peptide linking" "C4 H8 N2 O3" 132.119 ASN . ASPARAGINE . "L-peptide linking" "C4 H7 N O4" 133.103 ASP . "ASPARTIC ACID" . "L-peptide linking" "C5 H10 N2 O3" 146.146 GLN . GLUTAMINE . "L-peptide linking" "C5 H9 N O4" 147.13 GLU . "GLUTAMIC ACID" . "L-peptide linking" "C2 H5 N O2" 75.067 GLY . GLYCINE . "peptide linking" "C6 H10 N3 O2 1" 156.165 HIS . HISTIDINE . "L-peptide linking" "C6 H13 N O2" 131.175 ILE . ISOLEUCINE . "L-peptide linking" "C6 H13 N O2" 131.175 LEU . LEUCINE . "L-peptide linking" "C6 H15 N2 O2 1" 147.198 LYS . LYSINE . "L-peptide linking" "C5 H11 N O2 S" 149.208 MET . METHIONINE . "L-peptide linking" "C9 H11 N O2" 165.192 PHE . PHENYLALANINE . "L-peptide linking" "C5 H9 N O2" 115.132 PRO . PROLINE . "L-peptide linking" "C3 H7 N O3" 105.093 SER . SERINE . "L-peptide linking" "C4 H9 N O3" 119.12 THR . THREONINE . "L-peptide linking" "C9 H11 N O3" 181.191 TYR . TYROSINE . "L-peptide linking" "C5 H11 N O2" 117.148 VAL . VALINE . "L-peptide linking" # loop_ _citation.country _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_issue _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year . 1 . . . . . Structure . . 10.1016/j.str.2023.01.011 . "Structural and Dynamic Insights into α-Synuclein Dimer Conformations" 2023 . 2 "Wiley Interdiscip. Rev. Comput. Mol. Sci." . . . . 1 80 92 10.1002/wcms.4 . "Discrete molecular dynamics" 2011 . 3 Structure . . . . 16 1010 1018 10.1016/j.str.2008.03.013 18611374 "Ab Initio Folding of Proteins with All-Atom Discrete Molecular Dynamics" 2008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal 1 "Zamel J" 8 1 "Chen J" 9 1 "Zaer S" 10 1 "Harris PD" 11 1 "Drori P" 12 1 "Lebendiker M" 13 1 "Kalisman N" 14 1 "Dokholyan NV" 15 1 "Lerner E" 16 2 "Proctor EA" 1 2 "Ding F" 2 2 "Dokholyan NV" 3 3 "Ding F" 4 3 "Tsao D" 5 3 "Nie H" 6 3 "Dokholyan NV" 7 # _entity.details . _entity.formula_weight 16980.393 _entity.id 1 _entity.pdbx_description alpha-synuclein _entity.pdbx_number_of_molecules 1 _entity.src_method MAN _entity.type polymer # _entity_poly.entity_id 1 _entity_poly.nstd_chirality . _entity_poly.nstd_linkage NO _entity_poly.nstd_monomer NO _entity_poly.pdbx_seq_one_letter_code MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA _entity_poly.pdbx_seq_one_letter_code_can MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA _entity_poly.pdbx_sequence_evidence_code . _entity_poly.pdbx_strand_id A _entity_poly.type polypeptide(L) # loop_ _entity_poly_seq.entity_id _entity_poly_seq.hetero _entity_poly_seq.mon_id _entity_poly_seq.num 1 . MET 1 1 . ASP 2 1 . VAL 3 1 . PHE 4 1 . MET 5 1 . LYS 6 1 . GLY 7 1 . LEU 8 1 . SER 9 1 . LYS 10 1 . ALA 11 1 . LYS 12 1 . GLU 13 1 . GLY 14 1 . VAL 15 1 . VAL 16 1 . ALA 17 1 . ALA 18 1 . ALA 19 1 . GLU 20 1 . LYS 21 1 . THR 22 1 . LYS 23 1 . GLN 24 1 . GLY 25 1 . VAL 26 1 . ALA 27 1 . GLU 28 1 . ALA 29 1 . ALA 30 1 . GLY 31 1 . LYS 32 1 . THR 33 1 . LYS 34 1 . GLU 35 1 . GLY 36 1 . VAL 37 1 . LEU 38 1 . TYR 39 1 . VAL 40 1 . GLY 41 1 . SER 42 1 . LYS 43 1 . THR 44 1 . LYS 45 1 . GLU 46 1 . GLY 47 1 . VAL 48 1 . VAL 49 1 . HIS 50 1 . GLY 51 1 . VAL 52 1 . ALA 53 1 . THR 54 1 . VAL 55 1 . ALA 56 1 . GLU 57 1 . LYS 58 1 . THR 59 1 . LYS 60 1 . GLU 61 1 . GLN 62 1 . VAL 63 1 . THR 64 1 . ASN 65 1 . VAL 66 1 . GLY 67 1 . GLY 68 1 . ALA 69 1 . VAL 70 1 . VAL 71 1 . THR 72 1 . GLY 73 1 . VAL 74 1 . THR 75 1 . ALA 76 1 . VAL 77 1 . ALA 78 1 . GLN 79 1 . LYS 80 1 . THR 81 1 . VAL 82 1 . GLU 83 1 . GLY 84 1 . ALA 85 1 . GLY 86 1 . SER 87 1 . ILE 88 1 . ALA 89 1 . ALA 90 1 . ALA 91 1 . THR 92 1 . GLY 93 1 . PHE 94 1 . VAL 95 1 . LYS 96 1 . LYS 97 1 . ASP 98 1 . GLN 99 1 . LEU 100 1 . GLY 101 1 . LYS 102 1 . ASN 103 1 . GLU 104 1 . GLU 105 1 . GLY 106 1 . ALA 107 1 . PRO 108 1 . GLN 109 1 . GLU 110 1 . GLY 111 1 . ILE 112 1 . LEU 113 1 . GLU 114 1 . ASP 115 1 . MET 116 1 . PRO 117 1 . VAL 118 1 . ASP 119 1 . PRO 120 1 . ASP 121 1 . ASN 122 1 . GLU 123 1 . ALA 124 1 . TYR 125 1 . GLU 126 1 . MET 127 1 . PRO 128 1 . SER 129 1 . GLU 130 1 . GLU 131 1 . GLY 132 1 . TYR 133 1 . GLN 134 1 . ASP 135 1 . TYR 136 1 . GLU 137 1 . PRO 138 1 . GLU 139 1 . ALA 140 # _entity_src_gen.entity_id 1 _entity_src_gen.gene_src_common_name . _entity_src_gen.gene_src_genus . _entity_src_gen.pdbx_alt_source_flag . _entity_src_gen.pdbx_gene_src_scientific_name . _entity_src_gen.pdbx_src_id 1 # loop_ _ihm_cross_link_list.comp_id_1 _ihm_cross_link_list.comp_id_2 _ihm_cross_link_list.dataset_list_id _ihm_cross_link_list.details _ihm_cross_link_list.entity_description_1 _ihm_cross_link_list.entity_description_2 _ihm_cross_link_list.entity_id_1 _ihm_cross_link_list.entity_id_2 _ihm_cross_link_list.group_id _ihm_cross_link_list.id _ihm_cross_link_list.linker_chem_comp_descriptor_id _ihm_cross_link_list.linker_type _ihm_cross_link_list.seq_id_1 _ihm_cross_link_list.seq_id_2 MET LYS 1 . . . 1 1 1 1 . BS3 1 10 MET LYS 1 . . . 1 1 1 2 . BS3 1 12 MET LYS 1 . . . 1 1 1 3 . BS3 1 21 MET LYS 1 . . . 1 1 1 4 . BS3 1 23 MET LYS 1 . . . 1 1 1 5 . BS3 1 32 MET LYS 1 . . . 1 1 1 6 . BS3 1 43 MET LYS 1 . . . 1 1 1 7 . BS3 1 58 MET THR 1 . . . 1 1 1 8 . BS3 1 59 MET LYS 1 . . . 1 1 1 9 . BS3 1 60 MET LYS 1 . . . 1 1 1 10 . BS3 1 80 MET LYS 1 . . . 1 1 1 11 . BS3 1 96 MET LYS 1 . . . 1 1 1 12 . BS3 1 97 LYS LYS 1 . . . 1 1 1 13 . BS3 6 12 LYS LYS 1 . . . 1 1 1 14 . BS3 6 21 LYS LYS 1 . . . 1 1 1 15 . BS3 6 23 LYS LYS 1 . . . 1 1 1 16 . BS3 6 34 LYS LYS 1 . . . 1 1 1 17 . BS3 6 45 LYS LYS 1 . . . 1 1 1 18 . BS3 6 60 LYS LYS 1 . . . 1 1 1 19 . BS3 6 96 LYS LYS 1 . . . 1 1 1 20 . BS3 6 97 SER LYS 1 . . . 1 1 1 21 . BS3 9 60 LYS LYS 1 . . . 1 1 1 22 . BS3 10 23 LYS LYS 1 . . . 1 1 1 23 . BS3 10 32 LYS LYS 1 . . . 1 1 1 24 . BS3 10 34 LYS LYS 1 . . . 1 1 1 25 . BS3 10 45 LYS LYS 1 . . . 1 1 1 26 . BS3 10 58 LYS LYS 1 . . . 1 1 1 27 . BS3 10 60 LYS LYS 1 . . . 1 1 1 28 . BS3 12 21 LYS LYS 1 . . . 1 1 1 29 . BS3 12 32 LYS LYS 1 . . . 1 1 1 30 . BS3 12 43 LYS LYS 1 . . . 1 1 1 31 . BS3 12 58 LYS LYS 1 . . . 1 1 1 32 . BS3 12 80 LYS LYS 1 . . . 1 1 1 33 . BS3 12 96 LYS LYS 1 . . . 1 1 1 34 . BS3 21 32 LYS THR 1 . . . 1 1 1 35 . BS3 21 33 LYS LYS 1 . . . 1 1 1 36 . BS3 21 34 LYS LYS 1 . . . 1 1 1 37 . BS3 21 43 LYS LYS 1 . . . 1 1 1 38 . BS3 21 45 LYS LYS 1 . . . 1 1 1 39 . BS3 21 58 LYS LYS 1 . . . 1 1 1 40 . BS3 21 60 LYS THR 1 . . . 1 1 1 41 . BS3 21 64 LYS THR 1 . . . 1 1 1 42 . BS3 21 72 LYS LYS 1 . . . 1 1 1 43 . BS3 21 80 LYS LYS 1 . . . 1 1 1 44 . BS3 21 97 LYS LYS 1 . . . 1 1 1 45 . BS3 23 32 LYS SER 1 . . . 1 1 1 46 . BS3 23 42 LYS LYS 1 . . . 1 1 1 47 . BS3 23 43 LYS LYS 1 . . . 1 1 1 48 . BS3 23 58 LYS LYS 1 . . . 1 1 1 49 . BS3 23 80 LYS TYR 1 . . . 1 1 1 50 . BS3 32 39 LYS LYS 1 . . . 1 1 1 51 . BS3 32 43 LYS LYS 1 . . . 1 1 1 52 . BS3 32 45 LYS LYS 1 . . . 1 1 1 53 . BS3 32 58 LYS LYS 1 . . . 1 1 1 54 . BS3 32 60 LYS LYS 1 . . . 1 1 1 55 . BS3 32 97 THR LYS 1 . . . 1 1 1 56 . BS3 33 34 THR LYS 1 . . . 1 1 1 57 . BS3 33 80 LYS THR 1 . . . 1 1 1 58 . BS3 34 54 LYS LYS 1 . . . 1 1 1 59 . BS3 34 58 LYS LYS 1 . . . 1 1 1 60 . BS3 34 80 LYS LYS 1 . . . 1 1 1 61 . BS3 34 96 TYR LYS 1 . . . 1 1 1 62 . BS3 39 43 TYR LYS 1 . . . 1 1 1 63 . BS3 39 45 TYR LYS 1 . . . 1 1 1 64 . BS3 39 58 TYR LYS 1 . . . 1 1 1 65 . BS3 39 60 TYR LYS 1 . . . 1 1 1 66 . BS3 39 80 TYR LYS 1 . . . 1 1 1 67 . BS3 39 96 SER LYS 1 . . . 1 1 1 68 . BS3 42 43 SER LYS 1 . . . 1 1 1 69 . BS3 42 58 SER LYS 1 . . . 1 1 1 70 . BS3 42 60 LYS THR 1 . . . 1 1 1 71 . BS3 43 44 LYS THR 1 . . . 1 1 1 72 . BS3 43 54 LYS LYS 1 . . . 1 1 1 73 . BS3 43 60 LYS THR 1 . . . 1 1 1 74 . BS3 43 64 LYS LYS 1 . . . 1 1 1 75 . BS3 43 96 LYS LYS 1 . . . 1 1 1 76 . BS3 43 97 THR LYS 1 . . . 1 1 1 77 . BS3 44 80 LYS THR 1 . . . 1 1 1 78 . BS3 45 54 LYS THR 1 . . . 1 1 1 79 . BS3 45 59 LYS LYS 1 . . . 1 1 1 80 . BS3 45 60 LYS THR 1 . . . 1 1 1 81 . BS3 45 64 LYS LYS 1 . . . 1 1 1 82 . BS3 45 80 LYS THR 1 . . . 1 1 1 83 . BS3 45 81 LYS SER 1 . . . 1 1 1 84 . BS3 45 87 LYS LYS 1 . . . 1 1 1 85 . BS3 45 96 THR LYS 1 . . . 1 1 1 86 . BS3 54 60 LYS THR 1 . . . 1 1 1 87 . BS3 58 64 LYS LYS 1 . . . 1 1 1 88 . BS3 58 80 LYS LYS 1 . . . 1 1 1 89 . BS3 58 96 LYS LYS 1 . . . 1 1 1 90 . BS3 58 97 LYS SER 1 . . . 1 1 1 91 . BS3 60 87 LYS LYS 1 . . . 1 1 1 92 . BS3 60 96 LYS LYS 1 . . . 1 1 1 93 . BS3 60 97 LYS LYS 1 . . . 1 1 1 94 . BS3 80 97 SER LYS 1 . . . 1 1 1 95 . BS3 87 97 LYS LYS 1 . . . 1 1 1 96 . BS3 96 97 MET GLU 1 DMTMM . . 1 1 1 97 . Other 1 13 MET GLU 1 DMTMM . . 1 1 1 98 . Other 1 20 MET GLU 1 DMTMM . . 1 1 1 99 . Other 1 35 MET ASP 1 DMTMM . . 1 1 1 100 . Other 1 119 MET GLU 1 DMTMM . . 1 1 1 101 . Other 1 123 ASP LYS 1 DMTMM . . 1 1 1 102 . Other 2 32 LYS GLU 1 DMTMM . . 1 1 1 103 . Other 10 20 LYS GLU 1 DMTMM . . 1 1 1 104 . Other 12 13 GLU LYS 1 DMTMM . . 1 1 1 105 . Other 13 10 GLU LYS 1 DMTMM . . 1 1 1 106 . Other 13 32 GLU LYS 1 DMTMM . . 1 1 1 107 . Other 20 21 GLU THR 1 DMTMM . . 1 1 1 108 . Other 20 64 LYS GLU 1 DMTMM . . 1 1 1 109 . Other 32 57 LYS GLU 1 DMTMM . . 1 1 1 110 . Other 32 61 LYS GLU 1 DMTMM . . 1 1 1 111 . Other 34 57 GLU TYR 1 DMTMM . . 1 1 1 112 . Other 35 39 GLU LYS 1 DMTMM . . 1 1 1 113 . Other 57 58 GLU LYS 1 DMTMM . . 1 1 1 114 . Other 57 60 GLU THR 1 DMTMM . . 1 1 1 115 . Other 61 64 GLU SER 1 DMTMM . . 1 1 1 116 . Other 83 87 LYS GLU 1 DMTMM . . 1 1 1 117 . Other 96 105 ASP LYS 1 DMTMM . . 1 1 1 118 . Other 98 102 LYS GLU 1 DMTMM . . 1 1 1 119 . Other 102 105 LYS GLU 1 DMTMM . . 1 1 1 120 . Other 102 110 LYS GLU 1 DMTMM . . 1 1 1 121 . Other 102 114 LYS MET 1 . . . 1 1 1 122 . BS3 45 1 LYS LYS 1 . . . 1 1 1 123 . BS3 12 12 LYS LYS 1 . . . 1 1 1 124 . BS3 12 23 LYS LYS 1 . . . 1 1 1 125 . BS3 12 34 LYS LYS 1 . . . 1 1 1 126 . BS3 12 45 LYS LYS 1 . . . 1 1 1 127 . BS3 12 60 LYS LYS 1 . . . 1 1 1 128 . BS3 12 97 LYS LYS 1 . . . 1 1 1 129 . BS3 23 23 LYS LYS 1 . . . 1 1 1 130 . BS3 23 34 LYS LYS 1 . . . 1 1 1 131 . BS3 23 45 LYS LYS 1 . . . 1 1 1 132 . BS3 23 60 LYS LYS 1 . . . 1 1 1 133 . BS3 23 96 LYS LYS 1 . . . 1 1 1 134 . BS3 23 97 LYS LYS 1 . . . 1 1 1 135 . BS3 34 34 LYS LYS 1 . . . 1 1 1 136 . BS3 34 45 LYS LYS 1 . . . 1 1 1 137 . BS3 34 60 LYS LYS 1 . . . 1 1 1 138 . BS3 34 97 LYS LYS 1 . . . 1 1 1 139 . BS3 45 97 LYS GLU 1 DMTMM . . 1 1 1 140 . Other 12 83 LYS GLU 1 DMTMM . . 1 1 1 141 . Other 12 13 MET GLU 1 DMTMM . . 1 1 1 142 . Other 1 13 GLU LYS 1 DMTMM . . 1 1 1 143 . Other 13 23 LYS GLU 1 DMTMM . . 1 1 1 144 . Other 23 35 GLU LYS 1 DMTMM . . 1 1 1 145 . Other 83 23 LYS GLU 1 DMTMM . . 1 1 1 146 . Other 23 20 LYS GLU 1 DMTMM . . 1 1 1 147 . Other 45 13 LYS GLU 1 DMTMM . . 1 1 1 148 . Other 60 61 GLU LYS 1 DMTMM . . 1 1 1 149 . Other 46 23 GLU LYS 1 DMTMM . . 1 1 1 150 . Other 57 12 LYS GLU 1 DMTMM . . 1 1 1 151 . Other 45 28 GLU MET 1 DMTMM . . 1 1 1 152 . Other 83 1 LYS GLU 1 DMTMM . . 1 1 1 153 . Other 12 35 GLU LYS 1 DMTMM . . 1 1 1 154 . Other 20 6 GLU LYS 1 DMTMM . . 1 1 1 155 . Other 20 34 LYS GLU 1 DMTMM . . 1 1 1 156 . Other 12 20 GLU LYS 1 DMTMM . . 1 1 1 157 . Other 61 12 # loop_ _ihm_cross_link_restraint.asym_id_1 _ihm_cross_link_restraint.asym_id_2 _ihm_cross_link_restraint.atom_id_1 _ihm_cross_link_restraint.atom_id_2 _ihm_cross_link_restraint.comp_id_1 _ihm_cross_link_restraint.comp_id_2 _ihm_cross_link_restraint.conditional_crosslink_flag _ihm_cross_link_restraint.distance_threshold _ihm_cross_link_restraint.entity_id_1 _ihm_cross_link_restraint.entity_id_2 _ihm_cross_link_restraint.group_id _ihm_cross_link_restraint.id _ihm_cross_link_restraint.model_granularity _ihm_cross_link_restraint.pseudo_site_flag _ihm_cross_link_restraint.psi _ihm_cross_link_restraint.restraint_type _ihm_cross_link_restraint.seq_id_1 _ihm_cross_link_restraint.seq_id_2 _ihm_cross_link_restraint.sigma_1 _ihm_cross_link_restraint.sigma_2 A A . . MET LYS . 30 1 1 1 1 by-residue . . "upper bound" 1 10 . . A A . . MET LYS . 30 1 1 2 2 by-residue . . "upper bound" 1 12 . . A A . . MET LYS . 30 1 1 3 3 by-residue . . "upper bound" 1 21 . . A A . . MET LYS . 30 1 1 4 4 by-residue . . "upper bound" 1 23 . . A A . . MET LYS . 30 1 1 5 5 by-residue . . "upper bound" 1 32 . . A A . . MET LYS . 30 1 1 6 6 by-residue . . "upper bound" 1 43 . . A A . . MET LYS . 30 1 1 7 7 by-residue . . "upper bound" 1 58 . . A A . . MET THR . 30 1 1 8 8 by-residue . . "upper bound" 1 59 . . A A . . MET LYS . 30 1 1 9 9 by-residue . . "upper bound" 1 60 . . A A . . MET LYS . 30 1 1 10 10 by-residue . . "upper bound" 1 80 . . A A . . MET LYS . 30 1 1 11 11 by-residue . . "upper bound" 1 96 . . A A . . MET LYS . 30 1 1 12 12 by-residue . . "upper bound" 1 97 . . A A . . LYS LYS . 30 1 1 13 13 by-residue . . "upper bound" 6 12 . . A A . . LYS LYS . 30 1 1 14 14 by-residue . . "upper bound" 6 21 . . A A . . LYS LYS . 30 1 1 15 15 by-residue . . "upper bound" 6 23 . . A A . . LYS LYS . 30 1 1 16 16 by-residue . . "upper bound" 6 34 . . A A . . LYS LYS . 30 1 1 17 17 by-residue . . "upper bound" 6 45 . . A A . . LYS LYS . 30 1 1 18 18 by-residue . . "upper bound" 6 60 . . A A . . LYS LYS . 30 1 1 19 19 by-residue . . "upper bound" 6 96 . . A A . . LYS LYS . 30 1 1 20 20 by-residue . . "upper bound" 6 97 . . A A . . SER LYS . 30 1 1 21 21 by-residue . . "upper bound" 9 60 . . A A . . LYS LYS . 30 1 1 22 22 by-residue . . "upper bound" 10 23 . . A A . . LYS LYS . 30 1 1 23 23 by-residue . . "upper bound" 10 32 . . A A . . LYS LYS . 30 1 1 24 24 by-residue . . "upper bound" 10 34 . . A A . . LYS LYS . 30 1 1 25 25 by-residue . . "upper bound" 10 45 . . A A . . LYS LYS . 30 1 1 26 26 by-residue . . "upper bound" 10 58 . . A A . . LYS LYS . 30 1 1 27 27 by-residue . . "upper bound" 10 60 . . A A . . LYS LYS . 30 1 1 28 28 by-residue . . "upper bound" 12 21 . . A A . . LYS LYS . 30 1 1 29 29 by-residue . . "upper bound" 12 32 . . A A . . LYS LYS . 30 1 1 30 30 by-residue . . "upper bound" 12 43 . . A A . . LYS LYS . 30 1 1 31 31 by-residue . . "upper bound" 12 58 . . A A . . LYS LYS . 30 1 1 32 32 by-residue . . "upper bound" 12 80 . . A A . . LYS LYS . 30 1 1 33 33 by-residue . . "upper bound" 12 96 . . A A . . LYS LYS . 30 1 1 34 34 by-residue . . "upper bound" 21 32 . . A A . . LYS THR . 30 1 1 35 35 by-residue . . "upper bound" 21 33 . . A A . . LYS LYS . 30 1 1 36 36 by-residue . . "upper bound" 21 34 . . A A . . LYS LYS . 30 1 1 37 37 by-residue . . "upper bound" 21 43 . . A A . . LYS LYS . 30 1 1 38 38 by-residue . . "upper bound" 21 45 . . A A . . LYS LYS . 30 1 1 39 39 by-residue . . "upper bound" 21 58 . . A A . . LYS LYS . 30 1 1 40 40 by-residue . . "upper bound" 21 60 . . A A . . LYS THR . 30 1 1 41 41 by-residue . . "upper bound" 21 64 . . A A . . LYS THR . 30 1 1 42 42 by-residue . . "upper bound" 21 72 . . A A . . LYS LYS . 30 1 1 43 43 by-residue . . "upper bound" 21 80 . . A A . . LYS LYS . 30 1 1 44 44 by-residue . . "upper bound" 21 97 . . A A . . LYS LYS . 30 1 1 45 45 by-residue . . "upper bound" 23 32 . . A A . . LYS SER . 30 1 1 46 46 by-residue . . "upper bound" 23 42 . . A A . . LYS LYS . 30 1 1 47 47 by-residue . . "upper bound" 23 43 . . A A . . LYS LYS . 30 1 1 48 48 by-residue . . "upper bound" 23 58 . . A A . . LYS LYS . 30 1 1 49 49 by-residue . . "upper bound" 23 80 . . A A . . LYS TYR . 30 1 1 50 50 by-residue . . "upper bound" 32 39 . . A A . . LYS LYS . 30 1 1 51 51 by-residue . . "upper bound" 32 43 . . A A . . LYS LYS . 30 1 1 52 52 by-residue . . "upper bound" 32 45 . . A A . . LYS LYS . 30 1 1 53 53 by-residue . . "upper bound" 32 58 . . A A . . LYS LYS . 30 1 1 54 54 by-residue . . "upper bound" 32 60 . . A A . . LYS LYS . 30 1 1 55 55 by-residue . . "upper bound" 32 97 . . A A . . THR LYS . 30 1 1 56 56 by-residue . . "upper bound" 33 34 . . A A . . THR LYS . 30 1 1 57 57 by-residue . . "upper bound" 33 80 . . A A . . LYS THR . 30 1 1 58 58 by-residue . . "upper bound" 34 54 . . A A . . LYS LYS . 30 1 1 59 59 by-residue . . "upper bound" 34 58 . . A A . . LYS LYS . 30 1 1 60 60 by-residue . . "upper bound" 34 80 . . A A . . LYS LYS . 30 1 1 61 61 by-residue . . "upper bound" 34 96 . . A A . . TYR LYS . 30 1 1 62 62 by-residue . . "upper bound" 39 43 . . A A . . TYR LYS . 30 1 1 63 63 by-residue . . "upper bound" 39 45 . . A A . . TYR LYS . 30 1 1 64 64 by-residue . . "upper bound" 39 58 . . A A . . TYR LYS . 30 1 1 65 65 by-residue . . "upper bound" 39 60 . . A A . . TYR LYS . 30 1 1 66 66 by-residue . . "upper bound" 39 80 . . A A . . TYR LYS . 30 1 1 67 67 by-residue . . "upper bound" 39 96 . . A A . . SER LYS . 30 1 1 68 68 by-residue . . "upper bound" 42 43 . . A A . . SER LYS . 30 1 1 69 69 by-residue . . "upper bound" 42 58 . . A A . . SER LYS . 30 1 1 70 70 by-residue . . "upper bound" 42 60 . . A A . . LYS THR . 30 1 1 71 71 by-residue . . "upper bound" 43 44 . . A A . . LYS THR . 30 1 1 72 72 by-residue . . "upper bound" 43 54 . . A A . . LYS LYS . 30 1 1 73 73 by-residue . . "upper bound" 43 60 . . A A . . LYS THR . 30 1 1 74 74 by-residue . . "upper bound" 43 64 . . A A . . LYS LYS . 30 1 1 75 75 by-residue . . "upper bound" 43 96 . . A A . . LYS LYS . 30 1 1 76 76 by-residue . . "upper bound" 43 97 . . A A . . THR LYS . 30 1 1 77 77 by-residue . . "upper bound" 44 80 . . A A . . LYS THR . 30 1 1 78 78 by-residue . . "upper bound" 45 54 . . A A . . LYS THR . 30 1 1 79 79 by-residue . . "upper bound" 45 59 . . A A . . LYS LYS . 30 1 1 80 80 by-residue . . "upper bound" 45 60 . . A A . . LYS THR . 30 1 1 81 81 by-residue . . "upper bound" 45 64 . . A A . . LYS LYS . 30 1 1 82 82 by-residue . . "upper bound" 45 80 . . A A . . LYS THR . 30 1 1 83 83 by-residue . . "upper bound" 45 81 . . A A . . LYS SER . 30 1 1 84 84 by-residue . . "upper bound" 45 87 . . A A . . LYS LYS . 30 1 1 85 85 by-residue . . "upper bound" 45 96 . . A A . . THR LYS . 30 1 1 86 86 by-residue . . "upper bound" 54 60 . . A A . . LYS THR . 30 1 1 87 87 by-residue . . "upper bound" 58 64 . . A A . . LYS LYS . 30 1 1 88 88 by-residue . . "upper bound" 58 80 . . A A . . LYS LYS . 30 1 1 89 89 by-residue . . "upper bound" 58 96 . . A A . . LYS LYS . 30 1 1 90 90 by-residue . . "upper bound" 58 97 . . A A . . LYS SER . 30 1 1 91 91 by-residue . . "upper bound" 60 87 . . A A . . LYS LYS . 30 1 1 92 92 by-residue . . "upper bound" 60 96 . . A A . . LYS LYS . 30 1 1 93 93 by-residue . . "upper bound" 60 97 . . A A . . LYS LYS . 30 1 1 94 94 by-residue . . "upper bound" 80 97 . . A A . . SER LYS . 30 1 1 95 95 by-residue . . "upper bound" 87 97 . . A A . . LYS LYS . 30 1 1 96 96 by-residue . . "upper bound" 96 97 . . A A . . MET GLU . 10 1 1 97 97 by-residue . . "upper bound" 1 13 . . A A . . MET GLU . 10 1 1 98 98 by-residue . . "upper bound" 1 20 . . A A . . MET GLU . 10 1 1 99 99 by-residue . . "upper bound" 1 35 . . A A . . MET ASP . 10 1 1 100 100 by-residue . . "upper bound" 1 119 . . A A . . MET GLU . 10 1 1 101 101 by-residue . . "upper bound" 1 123 . . A A . . ASP LYS . 10 1 1 102 102 by-residue . . "upper bound" 2 32 . . A A . . LYS GLU . 10 1 1 103 103 by-residue . . "upper bound" 10 20 . . A A . . LYS GLU . 10 1 1 104 104 by-residue . . "upper bound" 12 13 . . A A . . GLU LYS . 10 1 1 105 105 by-residue . . "upper bound" 13 10 . . A A . . GLU LYS . 10 1 1 106 106 by-residue . . "upper bound" 13 32 . . A A . . GLU LYS . 10 1 1 107 107 by-residue . . "upper bound" 20 21 . . A A . . GLU THR . 10 1 1 108 108 by-residue . . "upper bound" 20 64 . . A A . . LYS GLU . 10 1 1 109 109 by-residue . . "upper bound" 32 57 . . A A . . LYS GLU . 10 1 1 110 110 by-residue . . "upper bound" 32 61 . . A A . . LYS GLU . 10 1 1 111 111 by-residue . . "upper bound" 34 57 . . A A . . GLU TYR . 10 1 1 112 112 by-residue . . "upper bound" 35 39 . . A A . . GLU LYS . 10 1 1 113 113 by-residue . . "upper bound" 57 58 . . A A . . GLU LYS . 10 1 1 114 114 by-residue . . "upper bound" 57 60 . . A A . . GLU THR . 10 1 1 115 115 by-residue . . "upper bound" 61 64 . . A A . . GLU SER . 10 1 1 116 116 by-residue . . "upper bound" 83 87 . . A A . . LYS GLU . 10 1 1 117 117 by-residue . . "upper bound" 96 105 . . A A . . ASP LYS . 10 1 1 118 118 by-residue . . "upper bound" 98 102 . . A A . . LYS GLU . 10 1 1 119 119 by-residue . . "upper bound" 102 105 . . A A . . LYS GLU . 10 1 1 120 120 by-residue . . "upper bound" 102 110 . . A A . . LYS GLU . 10 1 1 121 121 by-residue . . "upper bound" 102 114 . . B B . . MET LYS . 30 1 1 1 122 by-residue . . "upper bound" 1 10 . . B B . . MET LYS . 30 1 1 2 123 by-residue . . "upper bound" 1 12 . . B B . . MET LYS . 30 1 1 3 124 by-residue . . "upper bound" 1 21 . . B B . . MET LYS . 30 1 1 4 125 by-residue . . "upper bound" 1 23 . . B B . . MET LYS . 30 1 1 5 126 by-residue . . "upper bound" 1 32 . . B B . . MET LYS . 30 1 1 6 127 by-residue . . "upper bound" 1 43 . . B B . . MET LYS . 30 1 1 7 128 by-residue . . "upper bound" 1 58 . . B B . . MET THR . 30 1 1 8 129 by-residue . . "upper bound" 1 59 . . B B . . MET LYS . 30 1 1 9 130 by-residue . . "upper bound" 1 60 . . B B . . MET LYS . 30 1 1 10 131 by-residue . . "upper bound" 1 80 . . B B . . MET LYS . 30 1 1 11 132 by-residue . . "upper bound" 1 96 . . B B . . MET LYS . 30 1 1 12 133 by-residue . . "upper bound" 1 97 . . B B . . LYS LYS . 30 1 1 13 134 by-residue . . "upper bound" 6 12 . . B B . . LYS LYS . 30 1 1 14 135 by-residue . . "upper bound" 6 21 . . B B . . LYS LYS . 30 1 1 15 136 by-residue . . "upper bound" 6 23 . . B B . . LYS LYS . 30 1 1 16 137 by-residue . . "upper bound" 6 34 . . B B . . LYS LYS . 30 1 1 17 138 by-residue . . "upper bound" 6 45 . . B B . . LYS LYS . 30 1 1 18 139 by-residue . . "upper bound" 6 60 . . B B . . LYS LYS . 30 1 1 19 140 by-residue . . "upper bound" 6 96 . . B B . . LYS LYS . 30 1 1 20 141 by-residue . . "upper bound" 6 97 . . B B . . SER LYS . 30 1 1 21 142 by-residue . . "upper bound" 9 60 . . B B . . LYS LYS . 30 1 1 22 143 by-residue . . "upper bound" 10 23 . . B B . . LYS LYS . 30 1 1 23 144 by-residue . . "upper bound" 10 32 . . B B . . LYS LYS . 30 1 1 24 145 by-residue . . "upper bound" 10 34 . . B B . . LYS LYS . 30 1 1 25 146 by-residue . . "upper bound" 10 45 . . B B . . LYS LYS . 30 1 1 26 147 by-residue . . "upper bound" 10 58 . . B B . . LYS LYS . 30 1 1 27 148 by-residue . . "upper bound" 10 60 . . B B . . LYS LYS . 30 1 1 28 149 by-residue . . "upper bound" 12 21 . . B B . . LYS LYS . 30 1 1 29 150 by-residue . . "upper bound" 12 32 . . B B . . LYS LYS . 30 1 1 30 151 by-residue . . "upper bound" 12 43 . . B B . . LYS LYS . 30 1 1 31 152 by-residue . . "upper bound" 12 58 . . B B . . LYS LYS . 30 1 1 32 153 by-residue . . "upper bound" 12 80 . . B B . . LYS LYS . 30 1 1 33 154 by-residue . . "upper bound" 12 96 . . B B . . LYS LYS . 30 1 1 34 155 by-residue . . "upper bound" 21 32 . . B B . . LYS THR . 30 1 1 35 156 by-residue . . "upper bound" 21 33 . . B B . . LYS LYS . 30 1 1 36 157 by-residue . . "upper bound" 21 34 . . B B . . LYS LYS . 30 1 1 37 158 by-residue . . "upper bound" 21 43 . . B B . . LYS LYS . 30 1 1 38 159 by-residue . . "upper bound" 21 45 . . B B . . LYS LYS . 30 1 1 39 160 by-residue . . "upper bound" 21 58 . . B B . . LYS LYS . 30 1 1 40 161 by-residue . . "upper bound" 21 60 . . B B . . LYS THR . 30 1 1 41 162 by-residue . . "upper bound" 21 64 . . B B . . LYS THR . 30 1 1 42 163 by-residue . . "upper bound" 21 72 . . B B . . LYS LYS . 30 1 1 43 164 by-residue . . "upper bound" 21 80 . . B B . . LYS LYS . 30 1 1 44 165 by-residue . . "upper bound" 21 97 . . B B . . LYS LYS . 30 1 1 45 166 by-residue . . "upper bound" 23 32 . . B B . . LYS SER . 30 1 1 46 167 by-residue . . "upper bound" 23 42 . . B B . . LYS LYS . 30 1 1 47 168 by-residue . . "upper bound" 23 43 . . B B . . LYS LYS . 30 1 1 48 169 by-residue . . "upper bound" 23 58 . . B B . . LYS LYS . 30 1 1 49 170 by-residue . . "upper bound" 23 80 . . B B . . LYS TYR . 30 1 1 50 171 by-residue . . "upper bound" 32 39 . . B B . . LYS LYS . 30 1 1 51 172 by-residue . . "upper bound" 32 43 . . B B . . LYS LYS . 30 1 1 52 173 by-residue . . "upper bound" 32 45 . . B B . . LYS LYS . 30 1 1 53 174 by-residue . . "upper bound" 32 58 . . B B . . LYS LYS . 30 1 1 54 175 by-residue . . "upper bound" 32 60 . . B B . . LYS LYS . 30 1 1 55 176 by-residue . . "upper bound" 32 97 . . B B . . THR LYS . 30 1 1 56 177 by-residue . . "upper bound" 33 34 . . B B . . THR LYS . 30 1 1 57 178 by-residue . . "upper bound" 33 80 . . B B . . LYS THR . 30 1 1 58 179 by-residue . . "upper bound" 34 54 . . B B . . LYS LYS . 30 1 1 59 180 by-residue . . "upper bound" 34 58 . . B B . . LYS LYS . 30 1 1 60 181 by-residue . . "upper bound" 34 80 . . B B . . LYS LYS . 30 1 1 61 182 by-residue . . "upper bound" 34 96 . . B B . . TYR LYS . 30 1 1 62 183 by-residue . . "upper bound" 39 43 . . B B . . TYR LYS . 30 1 1 63 184 by-residue . . "upper bound" 39 45 . . B B . . TYR LYS . 30 1 1 64 185 by-residue . . "upper bound" 39 58 . . B B . . TYR LYS . 30 1 1 65 186 by-residue . . "upper bound" 39 60 . . B B . . TYR LYS . 30 1 1 66 187 by-residue . . "upper bound" 39 80 . . B B . . TYR LYS . 30 1 1 67 188 by-residue . . "upper bound" 39 96 . . B B . . SER LYS . 30 1 1 68 189 by-residue . . "upper bound" 42 43 . . B B . . SER LYS . 30 1 1 69 190 by-residue . . "upper bound" 42 58 . . B B . . SER LYS . 30 1 1 70 191 by-residue . . "upper bound" 42 60 . . B B . . LYS THR . 30 1 1 71 192 by-residue . . "upper bound" 43 44 . . B B . . LYS THR . 30 1 1 72 193 by-residue . . "upper bound" 43 54 . . B B . . LYS LYS . 30 1 1 73 194 by-residue . . "upper bound" 43 60 . . B B . . LYS THR . 30 1 1 74 195 by-residue . . "upper bound" 43 64 . . B B . . LYS LYS . 30 1 1 75 196 by-residue . . "upper bound" 43 96 . . B B . . LYS LYS . 30 1 1 76 197 by-residue . . "upper bound" 43 97 . . B B . . THR LYS . 30 1 1 77 198 by-residue . . "upper bound" 44 80 . . B B . . LYS THR . 30 1 1 78 199 by-residue . . "upper bound" 45 54 . . B B . . LYS THR . 30 1 1 79 200 by-residue . . "upper bound" 45 59 . . B B . . LYS LYS . 30 1 1 80 201 by-residue . . "upper bound" 45 60 . . B B . . LYS THR . 30 1 1 81 202 by-residue . . "upper bound" 45 64 . . B B . . LYS LYS . 30 1 1 82 203 by-residue . . "upper bound" 45 80 . . B B . . LYS THR . 30 1 1 83 204 by-residue . . "upper bound" 45 81 . . B B . . LYS SER . 30 1 1 84 205 by-residue . . "upper bound" 45 87 . . B B . . LYS LYS . 30 1 1 85 206 by-residue . . "upper bound" 45 96 . . B B . . THR LYS . 30 1 1 86 207 by-residue . . "upper bound" 54 60 . . B B . . LYS THR . 30 1 1 87 208 by-residue . . "upper bound" 58 64 . . B B . . LYS LYS . 30 1 1 88 209 by-residue . . "upper bound" 58 80 . . B B . . LYS LYS . 30 1 1 89 210 by-residue . . "upper bound" 58 96 . . B B . . LYS LYS . 30 1 1 90 211 by-residue . . "upper bound" 58 97 . . B B . . LYS SER . 30 1 1 91 212 by-residue . . "upper bound" 60 87 . . B B . . LYS LYS . 30 1 1 92 213 by-residue . . "upper bound" 60 96 . . B B . . LYS LYS . 30 1 1 93 214 by-residue . . "upper bound" 60 97 . . B B . . LYS LYS . 30 1 1 94 215 by-residue . . "upper bound" 80 97 . . B B . . SER LYS . 30 1 1 95 216 by-residue . . "upper bound" 87 97 . . B B . . LYS LYS . 30 1 1 96 217 by-residue . . "upper bound" 96 97 . . B B . . MET GLU . 10 1 1 97 218 by-residue . . "upper bound" 1 13 . . B B . . MET GLU . 10 1 1 98 219 by-residue . . "upper bound" 1 20 . . B B . . MET GLU . 10 1 1 99 220 by-residue . . "upper bound" 1 35 . . B B . . MET ASP . 10 1 1 100 221 by-residue . . "upper bound" 1 119 . . B B . . MET GLU . 10 1 1 101 222 by-residue . . "upper bound" 1 123 . . B B . . ASP LYS . 10 1 1 102 223 by-residue . . "upper bound" 2 32 . . B B . . LYS GLU . 10 1 1 103 224 by-residue . . "upper bound" 10 20 . . B B . . LYS GLU . 10 1 1 104 225 by-residue . . "upper bound" 12 13 . . B B . . GLU LYS . 10 1 1 105 226 by-residue . . "upper bound" 13 10 . . B B . . GLU LYS . 10 1 1 106 227 by-residue . . "upper bound" 13 32 . . B B . . GLU LYS . 10 1 1 107 228 by-residue . . "upper bound" 20 21 . . B B . . GLU THR . 10 1 1 108 229 by-residue . . "upper bound" 20 64 . . B B . . LYS GLU . 10 1 1 109 230 by-residue . . "upper bound" 32 57 . . B B . . LYS GLU . 10 1 1 110 231 by-residue . . "upper bound" 32 61 . . B B . . LYS GLU . 10 1 1 111 232 by-residue . . "upper bound" 34 57 . . B B . . GLU TYR . 10 1 1 112 233 by-residue . . "upper bound" 35 39 . . B B . . GLU LYS . 10 1 1 113 234 by-residue . . "upper bound" 57 58 . . B B . . GLU LYS . 10 1 1 114 235 by-residue . . "upper bound" 57 60 . . B B . . GLU THR . 10 1 1 115 236 by-residue . . "upper bound" 61 64 . . B B . . GLU SER . 10 1 1 116 237 by-residue . . "upper bound" 83 87 . . B B . . LYS GLU . 10 1 1 117 238 by-residue . . "upper bound" 96 105 . . B B . . ASP LYS . 10 1 1 118 239 by-residue . . "upper bound" 98 102 . . B B . . LYS GLU . 10 1 1 119 240 by-residue . . "upper bound" 102 105 . . B B . . LYS GLU . 10 1 1 120 241 by-residue . . "upper bound" 102 110 . . B B . . LYS GLU . 10 1 1 121 242 by-residue . . "upper bound" 102 114 . . A B . . LYS MET . 30 1 1 122 243 by-residue . . "upper bound" 45 1 . . A B . . LYS LYS . 30 1 1 123 244 by-residue . . "upper bound" 12 12 . . A B . . LYS LYS . 30 1 1 124 245 by-residue . . "upper bound" 12 23 . . A B . . LYS LYS . 30 1 1 125 246 by-residue . . "upper bound" 12 34 . . A B . . LYS LYS . 30 1 1 126 247 by-residue . . "upper bound" 12 45 . . A B . . LYS LYS . 30 1 1 127 248 by-residue . . "upper bound" 12 60 . . A B . . LYS LYS . 30 1 1 128 249 by-residue . . "upper bound" 12 97 . . A B . . LYS LYS . 30 1 1 129 250 by-residue . . "upper bound" 23 23 . . A B . . LYS LYS . 30 1 1 130 251 by-residue . . "upper bound" 23 34 . . A B . . LYS LYS . 30 1 1 131 252 by-residue . . "upper bound" 23 45 . . A B . . LYS LYS . 30 1 1 132 253 by-residue . . "upper bound" 23 60 . . A B . . LYS LYS . 30 1 1 133 254 by-residue . . "upper bound" 23 96 . . A B . . LYS LYS . 30 1 1 134 255 by-residue . . "upper bound" 23 97 . . A B . . LYS LYS . 30 1 1 135 256 by-residue . . "upper bound" 34 34 . . A B . . LYS LYS . 30 1 1 136 257 by-residue . . "upper bound" 34 45 . . A B . . LYS LYS . 30 1 1 137 258 by-residue . . "upper bound" 34 60 . . A B . . LYS LYS . 30 1 1 138 259 by-residue . . "upper bound" 34 97 . . A B . . LYS LYS . 30 1 1 139 260 by-residue . . "upper bound" 45 97 . . A B . . LYS GLU . 10 1 1 140 261 by-residue . . "upper bound" 12 83 . . A B . . LYS GLU . 10 1 1 141 262 by-residue . . "upper bound" 12 13 . . A B . . MET GLU . 10 1 1 142 263 by-residue . . "upper bound" 1 13 . . A B . . GLU LYS . 10 1 1 143 264 by-residue . . "upper bound" 13 23 . . A B . . LYS GLU . 10 1 1 144 265 by-residue . . "upper bound" 23 35 . . A B . . GLU LYS . 10 1 1 145 266 by-residue . . "upper bound" 83 23 . . A B . . LYS GLU . 10 1 1 146 267 by-residue . . "upper bound" 23 20 . . A B . . LYS GLU . 10 1 1 147 268 by-residue . . "upper bound" 45 13 . . A B . . LYS GLU . 10 1 1 148 269 by-residue . . "upper bound" 60 61 . . A B . . GLU LYS . 10 1 1 149 270 by-residue . . "upper bound" 46 23 . . A B . . GLU LYS . 10 1 1 150 271 by-residue . . "upper bound" 57 12 . . A B . . LYS GLU . 10 1 1 151 272 by-residue . . "upper bound" 45 28 . . A B . . GLU MET . 10 1 1 152 273 by-residue . . "upper bound" 83 1 . . A B . . LYS GLU . 10 1 1 153 274 by-residue . . "upper bound" 12 35 . . A B . . GLU LYS . 10 1 1 154 275 by-residue . . "upper bound" 20 6 . . A B . . GLU LYS . 10 1 1 155 276 by-residue . . "upper bound" 20 34 . . A B . . LYS GLU . 10 1 1 156 277 by-residue . . "upper bound" 12 20 . . A B . . GLU LYS . 10 1 1 157 278 by-residue . . "upper bound" 61 12 . . # _ihm_dataset_group.application . _ihm_dataset_group.details . _ihm_dataset_group.id 1 _ihm_dataset_group.name . # loop_ _ihm_dataset_group_link.dataset_list_id _ihm_dataset_group_link.group_id 1 1 2 1 # loop_ _ihm_dataset_list.data_type _ihm_dataset_list.database_hosted _ihm_dataset_list.details _ihm_dataset_list.id "Crosslinking-MS data" YES . 1 "De Novo model" NO . 2 # _ihm_dataset_related_db_reference.accession_code PXD030299 _ihm_dataset_related_db_reference.dataset_list_id 1 _ihm_dataset_related_db_reference.db_name PRIDE _ihm_dataset_related_db_reference.details . _ihm_dataset_related_db_reference.id 1 _ihm_dataset_related_db_reference.version . # _ihm_entity_poly_segment.comp_id_begin MET _ihm_entity_poly_segment.comp_id_end ALA _ihm_entity_poly_segment.entity_id 1 _ihm_entity_poly_segment.id 1 _ihm_entity_poly_segment.seq_id_begin 1 _ihm_entity_poly_segment.seq_id_end 140 # _ihm_model_group.details . _ihm_model_group.id 1 _ihm_model_group.name . # loop_ _ihm_model_group_link.group_id _ihm_model_group_link.model_id 1 1 1 2 1 3 1 4 1 5 1 6 1 7 1 8 # loop_ _ihm_model_list.assembly_id _ihm_model_list.model_id _ihm_model_list.model_name _ihm_model_list.protocol_id _ihm_model_list.representation_id 1 1 . 1 1 1 2 . 1 1 1 3 . 1 1 1 4 . 1 1 1 5 . 1 1 1 6 . 1 1 1 7 . 1 1 1 8 . 1 1 # _ihm_model_representation.details . _ihm_model_representation.id 1 _ihm_model_representation.name . # loop_ _ihm_model_representation_details.description _ihm_model_representation_details.entity_asym_id _ihm_model_representation_details.entity_description _ihm_model_representation_details.entity_id _ihm_model_representation_details.entity_poly_segment_id _ihm_model_representation_details.id _ihm_model_representation_details.model_granularity _ihm_model_representation_details.model_mode _ihm_model_representation_details.model_object_count _ihm_model_representation_details.model_object_primitive _ihm_model_representation_details.representation_id _ihm_model_representation_details.starting_model_id . A . 1 1 1 by-atom flexible . atomistic 1 1 . B . 1 1 2 by-atom flexible . atomistic 1 2 # _ihm_modeling_protocol.details . _ihm_modeling_protocol.id 1 _ihm_modeling_protocol.num_steps 2 _ihm_modeling_protocol.protocol_name "Cross-linking constraint-guided DMD simulations" # loop_ _ihm_modeling_protocol_details.dataset_group_id _ihm_modeling_protocol_details.description _ihm_modeling_protocol_details.ensemble_flag _ihm_modeling_protocol_details.id _ihm_modeling_protocol_details.multi_scale_flag _ihm_modeling_protocol_details.multi_state_flag _ihm_modeling_protocol_details.num_models_begin _ihm_modeling_protocol_details.num_models_end _ihm_modeling_protocol_details.ordered_flag _ihm_modeling_protocol_details.protocol_id _ihm_modeling_protocol_details.script_file_id _ihm_modeling_protocol_details.software_id _ihm_modeling_protocol_details.step_id _ihm_modeling_protocol_details.step_method _ihm_modeling_protocol_details.step_name _ihm_modeling_protocol_details.struct_assembly_description _ihm_modeling_protocol_details.struct_assembly_id 1 "At this step, cross-linking constraints are collected from experiments and used to design square-well functions for DMD simulations." YES 1 NO NO . . NO 1 . . 1 . "Design square-well functions based on cross-linking constraints" . 1 1 "At this step, the designed square-well functions are incorporated into the force field. Start DMD simulations." YES 2 NO NO . . NO 1 . 1 2 . "Perform DMD simulations" . 1 # loop_ _ihm_starting_model_details.asym_id _ihm_starting_model_details.dataset_list_id _ihm_starting_model_details.description _ihm_starting_model_details.entity_description _ihm_starting_model_details.entity_id _ihm_starting_model_details.entity_poly_segment_id _ihm_starting_model_details.starting_model_auth_asym_id _ihm_starting_model_details.starting_model_id _ihm_starting_model_details.starting_model_sequence_offset _ihm_starting_model_details.starting_model_source A 2 "extended conformation of alpha-synuclein" . 1 1 A 1 0 "ab initio model" B 2 "extended conformation of alpha-synuclein" . 1 1 B 2 0 "ab initio model" # _ihm_struct_assembly.description "The alpha-synuclein dimer structures determined using chemical cross-linking restraints guided discrete molecular dynamics simulations." _ihm_struct_assembly.id 1 _ihm_struct_assembly.name "Alpha-synuclein dimer" # loop_ _ihm_struct_assembly_details.assembly_id _ihm_struct_assembly_details.asym_id _ihm_struct_assembly_details.entity_description _ihm_struct_assembly_details.entity_id _ihm_struct_assembly_details.entity_poly_segment_id _ihm_struct_assembly_details.id _ihm_struct_assembly_details.parent_assembly_id 1 A . 1 1 1 1 1 B . 1 1 2 1 # _software.citation_id 2 _software.classification "model building" _software.description . _software.location http://www.moleculesinaction.com/pdmd.html _software.name "DMD software" _software.pdbx_ordinal 1 _software.type . _software.version . # _struct.entry_id 9A1Q _struct.pdbx_CASP_flag . _struct.pdbx_descriptor . _struct.pdbx_details "The alpha-synuclein dimer structures are determined by using cross-linking constraints guided discrete molecular dynamics simulations. The structures are clustered and here are the centroid structures of eight clusters." _struct.pdbx_model_details "The structures were produced from a 200 microsecond discrete molecular dynamics simulation starting from an extended conformation of alpha-synuclein." _struct.pdbx_model_type_details . _struct.title "The structural models of alpha-synuclein dimer" _struct.pdbx_structure_determination_methodology integrative # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_PDB_id _struct_asym.pdbx_alt_id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.pdbx_order _struct_asym.pdbx_type . 1 A . . . . . . . 1 B . . . . . . # _struct_ref.db_code SYUA_HUMAN _struct_ref.db_name UNP _struct_ref.details . _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P37840 _struct_ref.pdbx_seq_one_letter_code . # _struct_ref_seq.align_id 1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.db_align_end 140 _struct_ref_seq.ref_id 1 _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.seq_align_end 140 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 1 MET MET A . A 1 2 ASP 2 2 ASP ASP A . A 1 3 VAL 3 3 VAL VAL A . A 1 4 PHE 4 4 PHE PHE A . A 1 5 MET 5 5 MET MET A . A 1 6 LYS 6 6 LYS LYS A . A 1 7 GLY 7 7 GLY GLY A . A 1 8 LEU 8 8 LEU LEU A . A 1 9 SER 9 9 SER SER A . A 1 10 LYS 10 10 LYS LYS A . A 1 11 ALA 11 11 ALA ALA A . A 1 12 LYS 12 12 LYS LYS A . A 1 13 GLU 13 13 GLU GLU A . A 1 14 GLY 14 14 GLY GLY A . A 1 15 VAL 15 15 VAL VAL A . A 1 16 VAL 16 16 VAL VAL A . A 1 17 ALA 17 17 ALA ALA A . A 1 18 ALA 18 18 ALA ALA A . A 1 19 ALA 19 19 ALA ALA A . A 1 20 GLU 20 20 GLU GLU A . A 1 21 LYS 21 21 LYS LYS A . A 1 22 THR 22 22 THR THR A . A 1 23 LYS 23 23 LYS LYS A . A 1 24 GLN 24 24 GLN GLN A . A 1 25 GLY 25 25 GLY GLY A . A 1 26 VAL 26 26 VAL VAL A . A 1 27 ALA 27 27 ALA ALA A . A 1 28 GLU 28 28 GLU GLU A . A 1 29 ALA 29 29 ALA ALA A . A 1 30 ALA 30 30 ALA ALA A . A 1 31 GLY 31 31 GLY GLY A . A 1 32 LYS 32 32 LYS LYS A . A 1 33 THR 33 33 THR THR A . A 1 34 LYS 34 34 LYS LYS A . A 1 35 GLU 35 35 GLU GLU A . A 1 36 GLY 36 36 GLY GLY A . A 1 37 VAL 37 37 VAL VAL A . A 1 38 LEU 38 38 LEU LEU A . A 1 39 TYR 39 39 TYR TYR A . A 1 40 VAL 40 40 VAL VAL A . A 1 41 GLY 41 41 GLY GLY A . A 1 42 SER 42 42 SER SER A . A 1 43 LYS 43 43 LYS LYS A . A 1 44 THR 44 44 THR THR A . A 1 45 LYS 45 45 LYS LYS A . A 1 46 GLU 46 46 GLU GLU A . A 1 47 GLY 47 47 GLY GLY A . A 1 48 VAL 48 48 VAL VAL A . A 1 49 VAL 49 49 VAL VAL A . A 1 50 HIS 50 50 HIS HIS A . A 1 51 GLY 51 51 GLY GLY A . A 1 52 VAL 52 52 VAL VAL A . A 1 53 ALA 53 53 ALA ALA A . A 1 54 THR 54 54 THR THR A . A 1 55 VAL 55 55 VAL VAL A . A 1 56 ALA 56 56 ALA ALA A . A 1 57 GLU 57 57 GLU GLU A . A 1 58 LYS 58 58 LYS LYS A . A 1 59 THR 59 59 THR THR A . A 1 60 LYS 60 60 LYS LYS A . A 1 61 GLU 61 61 GLU GLU A . A 1 62 GLN 62 62 GLN GLN A . A 1 63 VAL 63 63 VAL VAL A . A 1 64 THR 64 64 THR THR A . A 1 65 ASN 65 65 ASN ASN A . A 1 66 VAL 66 66 VAL VAL A . A 1 67 GLY 67 67 GLY GLY A . A 1 68 GLY 68 68 GLY GLY A . A 1 69 ALA 69 69 ALA ALA A . A 1 70 VAL 70 70 VAL VAL A . A 1 71 VAL 71 71 VAL VAL A . A 1 72 THR 72 72 THR THR A . A 1 73 GLY 73 73 GLY GLY A . A 1 74 VAL 74 74 VAL VAL A . A 1 75 THR 75 75 THR THR A . A 1 76 ALA 76 76 ALA ALA A . A 1 77 VAL 77 77 VAL VAL A . A 1 78 ALA 78 78 ALA ALA A . A 1 79 GLN 79 79 GLN GLN A . A 1 80 LYS 80 80 LYS LYS A . A 1 81 THR 81 81 THR THR A . A 1 82 VAL 82 82 VAL VAL A . A 1 83 GLU 83 83 GLU GLU A . A 1 84 GLY 84 84 GLY GLY A . A 1 85 ALA 85 85 ALA ALA A . A 1 86 GLY 86 86 GLY GLY A . A 1 87 SER 87 87 SER SER A . A 1 88 ILE 88 88 ILE ILE A . A 1 89 ALA 89 89 ALA ALA A . A 1 90 ALA 90 90 ALA ALA A . A 1 91 ALA 91 91 ALA ALA A . A 1 92 THR 92 92 THR THR A . A 1 93 GLY 93 93 GLY GLY A . A 1 94 PHE 94 94 PHE PHE A . A 1 95 VAL 95 95 VAL VAL A . A 1 96 LYS 96 96 LYS LYS A . A 1 97 LYS 97 97 LYS LYS A . A 1 98 ASP 98 98 ASP ASP A . A 1 99 GLN 99 99 GLN GLN A . A 1 100 LEU 100 100 LEU LEU A . A 1 101 GLY 101 101 GLY GLY A . A 1 102 LYS 102 102 LYS LYS A . A 1 103 ASN 103 103 ASN ASN A . A 1 104 GLU 104 104 GLU GLU A . A 1 105 GLU 105 105 GLU GLU A . A 1 106 GLY 106 106 GLY GLY A . A 1 107 ALA 107 107 ALA ALA A . A 1 108 PRO 108 108 PRO PRO A . A 1 109 GLN 109 109 GLN GLN A . A 1 110 GLU 110 110 GLU GLU A . A 1 111 GLY 111 111 GLY GLY A . A 1 112 ILE 112 112 ILE ILE A . A 1 113 LEU 113 113 LEU LEU A . A 1 114 GLU 114 114 GLU GLU A . A 1 115 ASP 115 115 ASP ASP A . A 1 116 MET 116 116 MET MET A . A 1 117 PRO 117 117 PRO PRO A . A 1 118 VAL 118 118 VAL VAL A . A 1 119 ASP 119 119 ASP ASP A . A 1 120 PRO 120 120 PRO PRO A . A 1 121 ASP 121 121 ASP ASP A . A 1 122 ASN 122 122 ASN ASN A . A 1 123 GLU 123 123 GLU GLU A . A 1 124 ALA 124 124 ALA ALA A . A 1 125 TYR 125 125 TYR TYR A . A 1 126 GLU 126 126 GLU GLU A . A 1 127 MET 127 127 MET MET A . A 1 128 PRO 128 128 PRO PRO A . A 1 129 SER 129 129 SER SER A . A 1 130 GLU 130 130 GLU GLU A . A 1 131 GLU 131 131 GLU GLU A . A 1 132 GLY 132 132 GLY GLY A . A 1 133 TYR 133 133 TYR TYR A . A 1 134 GLN 134 134 GLN GLN A . A 1 135 ASP 135 135 ASP ASP A . A 1 136 TYR 136 136 TYR TYR A . A 1 137 GLU 137 137 GLU GLU A . A 1 138 PRO 138 138 PRO PRO A . A 1 139 GLU 139 139 GLU GLU A . A 1 140 ALA 140 140 ALA ALA A . B 1 1 MET 1 1 MET MET B . B 1 2 ASP 2 2 ASP ASP B . B 1 3 VAL 3 3 VAL VAL B . B 1 4 PHE 4 4 PHE PHE B . B 1 5 MET 5 5 MET MET B . B 1 6 LYS 6 6 LYS LYS B . B 1 7 GLY 7 7 GLY GLY B . B 1 8 LEU 8 8 LEU LEU B . B 1 9 SER 9 9 SER SER B . B 1 10 LYS 10 10 LYS LYS B . B 1 11 ALA 11 11 ALA ALA B . B 1 12 LYS 12 12 LYS LYS B . B 1 13 GLU 13 13 GLU GLU B . B 1 14 GLY 14 14 GLY GLY B . B 1 15 VAL 15 15 VAL VAL B . B 1 16 VAL 16 16 VAL VAL B . B 1 17 ALA 17 17 ALA ALA B . B 1 18 ALA 18 18 ALA ALA B . B 1 19 ALA 19 19 ALA ALA B . B 1 20 GLU 20 20 GLU GLU B . B 1 21 LYS 21 21 LYS LYS B . B 1 22 THR 22 22 THR THR B . B 1 23 LYS 23 23 LYS LYS B . B 1 24 GLN 24 24 GLN GLN B . B 1 25 GLY 25 25 GLY GLY B . B 1 26 VAL 26 26 VAL VAL B . B 1 27 ALA 27 27 ALA ALA B . B 1 28 GLU 28 28 GLU GLU B . B 1 29 ALA 29 29 ALA ALA B . B 1 30 ALA 30 30 ALA ALA B . B 1 31 GLY 31 31 GLY GLY B . B 1 32 LYS 32 32 LYS LYS B . B 1 33 THR 33 33 THR THR B . B 1 34 LYS 34 34 LYS LYS B . B 1 35 GLU 35 35 GLU GLU B . B 1 36 GLY 36 36 GLY GLY B . B 1 37 VAL 37 37 VAL VAL B . B 1 38 LEU 38 38 LEU LEU B . B 1 39 TYR 39 39 TYR TYR B . B 1 40 VAL 40 40 VAL VAL B . B 1 41 GLY 41 41 GLY GLY B . B 1 42 SER 42 42 SER SER B . B 1 43 LYS 43 43 LYS LYS B . B 1 44 THR 44 44 THR THR B . B 1 45 LYS 45 45 LYS LYS B . B 1 46 GLU 46 46 GLU GLU B . B 1 47 GLY 47 47 GLY GLY B . B 1 48 VAL 48 48 VAL VAL B . B 1 49 VAL 49 49 VAL VAL B . B 1 50 HIS 50 50 HIS HIS B . B 1 51 GLY 51 51 GLY GLY B . B 1 52 VAL 52 52 VAL VAL B . B 1 53 ALA 53 53 ALA ALA B . B 1 54 THR 54 54 THR THR B . B 1 55 VAL 55 55 VAL VAL B . B 1 56 ALA 56 56 ALA ALA B . B 1 57 GLU 57 57 GLU GLU B . B 1 58 LYS 58 58 LYS LYS B . B 1 59 THR 59 59 THR THR B . B 1 60 LYS 60 60 LYS LYS B . B 1 61 GLU 61 61 GLU GLU B . B 1 62 GLN 62 62 GLN GLN B . B 1 63 VAL 63 63 VAL VAL B . B 1 64 THR 64 64 THR THR B . B 1 65 ASN 65 65 ASN ASN B . B 1 66 VAL 66 66 VAL VAL B . B 1 67 GLY 67 67 GLY GLY B . B 1 68 GLY 68 68 GLY GLY B . B 1 69 ALA 69 69 ALA ALA B . B 1 70 VAL 70 70 VAL VAL B . B 1 71 VAL 71 71 VAL VAL B . B 1 72 THR 72 72 THR THR B . B 1 73 GLY 73 73 GLY GLY B . B 1 74 VAL 74 74 VAL VAL B . B 1 75 THR 75 75 THR THR B . B 1 76 ALA 76 76 ALA ALA B . B 1 77 VAL 77 77 VAL VAL B . B 1 78 ALA 78 78 ALA ALA B . B 1 79 GLN 79 79 GLN GLN B . B 1 80 LYS 80 80 LYS LYS B . B 1 81 THR 81 81 THR THR B . B 1 82 VAL 82 82 VAL VAL B . B 1 83 GLU 83 83 GLU GLU B . B 1 84 GLY 84 84 GLY GLY B . B 1 85 ALA 85 85 ALA ALA B . B 1 86 GLY 86 86 GLY GLY B . B 1 87 SER 87 87 SER SER B . B 1 88 ILE 88 88 ILE ILE B . B 1 89 ALA 89 89 ALA ALA B . B 1 90 ALA 90 90 ALA ALA B . B 1 91 ALA 91 91 ALA ALA B . B 1 92 THR 92 92 THR THR B . B 1 93 GLY 93 93 GLY GLY B . B 1 94 PHE 94 94 PHE PHE B . B 1 95 VAL 95 95 VAL VAL B . B 1 96 LYS 96 96 LYS LYS B . B 1 97 LYS 97 97 LYS LYS B . B 1 98 ASP 98 98 ASP ASP B . B 1 99 GLN 99 99 GLN GLN B . B 1 100 LEU 100 100 LEU LEU B . B 1 101 GLY 101 101 GLY GLY B . B 1 102 LYS 102 102 LYS LYS B . B 1 103 ASN 103 103 ASN ASN B . B 1 104 GLU 104 104 GLU GLU B . B 1 105 GLU 105 105 GLU GLU B . B 1 106 GLY 106 106 GLY GLY B . B 1 107 ALA 107 107 ALA ALA B . B 1 108 PRO 108 108 PRO PRO B . B 1 109 GLN 109 109 GLN GLN B . B 1 110 GLU 110 110 GLU GLU B . B 1 111 GLY 111 111 GLY GLY B . B 1 112 ILE 112 112 ILE ILE B . B 1 113 LEU 113 113 LEU LEU B . B 1 114 GLU 114 114 GLU GLU B . B 1 115 ASP 115 115 ASP ASP B . B 1 116 MET 116 116 MET MET B . B 1 117 PRO 117 117 PRO PRO B . B 1 118 VAL 118 118 VAL VAL B . B 1 119 ASP 119 119 ASP ASP B . B 1 120 PRO 120 120 PRO PRO B . B 1 121 ASP 121 121 ASP ASP B . B 1 122 ASN 122 122 ASN ASN B . B 1 123 GLU 123 123 GLU GLU B . B 1 124 ALA 124 124 ALA ALA B . B 1 125 TYR 125 125 TYR TYR B . B 1 126 GLU 126 126 GLU GLU B . B 1 127 MET 127 127 MET MET B . B 1 128 PRO 128 128 PRO PRO B . B 1 129 SER 129 129 SER SER B . B 1 130 GLU 130 130 GLU GLU B . B 1 131 GLU 131 131 GLU GLU B . B 1 132 GLY 132 132 GLY GLY B . B 1 133 TYR 133 133 TYR TYR B . B 1 134 GLN 134 134 GLN GLN B . B 1 135 ASP 135 135 ASP ASP B . B 1 136 TYR 136 136 TYR TYR B . B 1 137 GLU 137 137 GLU GLU B . B 1 138 PRO 138 138 PRO PRO B . B 1 139 GLU 139 139 GLU GLU B . B 1 140 ALA 140 140 ALA ALA B . # # loop_ # #