data_9A2V # _entry.id 9A2V # loop_ _atom_type.symbol C H N O S # loop_ _audit_author.name _audit_author.pdbx_ordinal "Stahl, K." 1 "Graziadei, A." 2 "Dau, T." 3 "Brock, O." 4 "Rappsilber, J." 5 # loop_ _audit_conform.dict_location _audit_conform.dict_name _audit_conform.dict_version https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ihm_ext.dic mmcif_ihm_ext.dic 1.26 http://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic mmcif_pdbx.dic 5.395 # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB-Dev PDBDEV_00000180 PDBDEV_00000180 ? PDB 9A2V pdb_00009a2v 10.2210/pdb9a2v/pdb # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 9A2V _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2023-02-03 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-02-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _ihm_entry_collection.id PDBDEV_G_1000001 _ihm_entry_collection.name . _ihm_entry_collection.details 'Collection of entries belonging to the publication: "Protein structure prediction with in-cell photo-crosslinking mass spectrometry and deep learning"' # _ihm_entry_collection_mapping.collection_id PDBDEV_G_1000001 _ihm_entry_collection_mapping.entry_id 9A2V # loop_ _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.type "C3 H7 N O2" 89.094 ALA . ALANINE . "L-peptide linking" "C6 H15 N4 O2 1" 175.212 ARG . ARGININE . "L-peptide linking" "C4 H8 N2 O3" 132.119 ASN . ASPARAGINE . "L-peptide linking" "C4 H7 N O4" 133.103 ASP . "ASPARTIC ACID" . "L-peptide linking" "C3 H7 N O2 S" 121.154 CYS . CYSTEINE . "L-peptide linking" "C5 H10 N2 O3" 146.146 GLN . GLUTAMINE . "L-peptide linking" "C5 H9 N O4" 147.13 GLU . "GLUTAMIC ACID" . "L-peptide linking" "C2 H5 N O2" 75.067 GLY . GLYCINE . "peptide linking" "C6 H10 N3 O2 1" 156.165 HIS . HISTIDINE . "L-peptide linking" "C6 H13 N O2" 131.175 ILE . ISOLEUCINE . "L-peptide linking" "C6 H13 N O2" 131.175 LEU . LEUCINE . "L-peptide linking" "C6 H15 N2 O2 1" 147.198 LYS . LYSINE . "L-peptide linking" "C5 H11 N O2 S" 149.208 MET . METHIONINE . "L-peptide linking" "C9 H11 N O2" 165.192 PHE . PHENYLALANINE . "L-peptide linking" "C5 H9 N O2" 115.132 PRO . PROLINE . "L-peptide linking" "C3 H7 N O3" 105.093 SER . SERINE . "L-peptide linking" "C4 H9 N O3" 119.12 THR . THREONINE . "L-peptide linking" "C11 H12 N2 O2" 204.229 TRP . TRYPTOPHAN . "L-peptide linking" "C9 H11 N O3" 181.191 TYR . TYROSINE . "L-peptide linking" "C5 H11 N O2" 117.148 VAL . VALINE . "L-peptide linking" # _citation.country . _citation.id 1 _citation.journal_abbrev "Nature Biotechnology" _citation.journal_id_ASTM . _citation.journal_id_CSD . _citation.journal_id_ISSN . _citation.journal_issue . _citation.journal_volume . _citation.page_first . _citation.page_last . _citation.pdbx_database_id_DOI 10.1038/s41587-023-01704-z _citation.pdbx_database_id_PubMed 36941363 _citation.title "Protein structure prediction with in-cell photo-crosslinking mass spectrometry and deep learning" _citation.year 2023 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal 1 "Stahl, K." 1 1 "Graziadei, A." 2 1 "Dau, T." 3 1 "Brock, O." 4 1 "Rappsilber, J." 5 # _entity.details . _entity.formula_weight 49372.08 _entity.id 1 _entity.pdbx_description P0AE06 _entity.pdbx_number_of_molecules 1 _entity.src_method NAT _entity.type polymer # _entity_poly.entity_id 1 _entity_poly.nstd_chirality . _entity_poly.nstd_linkage NO _entity_poly.nstd_monomer NO _entity_poly.pdbx_seq_one_letter_code MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQPEQSKS _entity_poly.pdbx_seq_one_letter_code_can MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQPEQSKS _entity_poly.pdbx_sequence_evidence_code . _entity_poly.pdbx_strand_id A _entity_poly.type polypeptide(L) # loop_ _entity_poly_seq.entity_id _entity_poly_seq.hetero _entity_poly_seq.mon_id _entity_poly_seq.num 1 . MET 1 1 . ASN 2 1 . LYS 3 1 . ASN 4 1 . ARG 5 1 . GLY 6 1 . PHE 7 1 . THR 8 1 . PRO 9 1 . LEU 10 1 . ALA 11 1 . VAL 12 1 . VAL 13 1 . LEU 14 1 . MET 15 1 . LEU 16 1 . SER 17 1 . GLY 18 1 . SER 19 1 . LEU 20 1 . ALA 21 1 . LEU 22 1 . THR 23 1 . GLY 24 1 . CYS 25 1 . ASP 26 1 . ASP 27 1 . LYS 28 1 . GLN 29 1 . ALA 30 1 . GLN 31 1 . GLN 32 1 . GLY 33 1 . GLY 34 1 . GLN 35 1 . GLN 36 1 . MET 37 1 . PRO 38 1 . ALA 39 1 . VAL 40 1 . GLY 41 1 . VAL 42 1 . VAL 43 1 . THR 44 1 . VAL 45 1 . LYS 46 1 . THR 47 1 . GLU 48 1 . PRO 49 1 . LEU 50 1 . GLN 51 1 . ILE 52 1 . THR 53 1 . THR 54 1 . GLU 55 1 . LEU 56 1 . PRO 57 1 . GLY 58 1 . ARG 59 1 . THR 60 1 . SER 61 1 . ALA 62 1 . TYR 63 1 . ARG 64 1 . ILE 65 1 . ALA 66 1 . GLU 67 1 . VAL 68 1 . ARG 69 1 . PRO 70 1 . GLN 71 1 . VAL 72 1 . SER 73 1 . GLY 74 1 . ILE 75 1 . ILE 76 1 . LEU 77 1 . LYS 78 1 . ARG 79 1 . ASN 80 1 . PHE 81 1 . LYS 82 1 . GLU 83 1 . GLY 84 1 . SER 85 1 . ASP 86 1 . ILE 87 1 . GLU 88 1 . ALA 89 1 . GLY 90 1 . VAL 91 1 . SER 92 1 . LEU 93 1 . TYR 94 1 . GLN 95 1 . ILE 96 1 . ASP 97 1 . PRO 98 1 . ALA 99 1 . THR 100 1 . TYR 101 1 . GLN 102 1 . ALA 103 1 . THR 104 1 . TYR 105 1 . ASP 106 1 . SER 107 1 . ALA 108 1 . LYS 109 1 . GLY 110 1 . ASP 111 1 . LEU 112 1 . ALA 113 1 . LYS 114 1 . ALA 115 1 . GLN 116 1 . ALA 117 1 . ALA 118 1 . ALA 119 1 . ASN 120 1 . ILE 121 1 . ALA 122 1 . GLN 123 1 . LEU 124 1 . THR 125 1 . VAL 126 1 . ASN 127 1 . ARG 128 1 . TYR 129 1 . GLN 130 1 . LYS 131 1 . LEU 132 1 . LEU 133 1 . GLY 134 1 . THR 135 1 . GLN 136 1 . TYR 137 1 . ILE 138 1 . SER 139 1 . LYS 140 1 . GLN 141 1 . GLU 142 1 . TYR 143 1 . ASP 144 1 . GLN 145 1 . ALA 146 1 . LEU 147 1 . ALA 148 1 . ASP 149 1 . ALA 150 1 . GLN 151 1 . GLN 152 1 . ALA 153 1 . ASN 154 1 . ALA 155 1 . ALA 156 1 . VAL 157 1 . THR 158 1 . ALA 159 1 . ALA 160 1 . LYS 161 1 . ALA 162 1 . ALA 163 1 . VAL 164 1 . GLU 165 1 . THR 166 1 . ALA 167 1 . ARG 168 1 . ILE 169 1 . ASN 170 1 . LEU 171 1 . ALA 172 1 . TYR 173 1 . THR 174 1 . LYS 175 1 . VAL 176 1 . THR 177 1 . SER 178 1 . PRO 179 1 . ILE 180 1 . SER 181 1 . GLY 182 1 . ARG 183 1 . ILE 184 1 . GLY 185 1 . LYS 186 1 . SER 187 1 . ASN 188 1 . VAL 189 1 . THR 190 1 . GLU 191 1 . GLY 192 1 . ALA 193 1 . LEU 194 1 . VAL 195 1 . GLN 196 1 . ASN 197 1 . GLY 198 1 . GLN 199 1 . ALA 200 1 . THR 201 1 . ALA 202 1 . LEU 203 1 . ALA 204 1 . THR 205 1 . VAL 206 1 . GLN 207 1 . GLN 208 1 . LEU 209 1 . ASP 210 1 . PRO 211 1 . ILE 212 1 . TYR 213 1 . VAL 214 1 . ASP 215 1 . VAL 216 1 . THR 217 1 . GLN 218 1 . SER 219 1 . SER 220 1 . ASN 221 1 . ASP 222 1 . PHE 223 1 . LEU 224 1 . ARG 225 1 . LEU 226 1 . LYS 227 1 . GLN 228 1 . GLU 229 1 . LEU 230 1 . ALA 231 1 . ASN 232 1 . GLY 233 1 . THR 234 1 . LEU 235 1 . LYS 236 1 . GLN 237 1 . GLU 238 1 . ASN 239 1 . GLY 240 1 . LYS 241 1 . ALA 242 1 . LYS 243 1 . VAL 244 1 . SER 245 1 . LEU 246 1 . ILE 247 1 . THR 248 1 . SER 249 1 . ASP 250 1 . GLY 251 1 . ILE 252 1 . LYS 253 1 . PHE 254 1 . PRO 255 1 . GLN 256 1 . ASP 257 1 . GLY 258 1 . THR 259 1 . LEU 260 1 . GLU 261 1 . PHE 262 1 . SER 263 1 . ASP 264 1 . VAL 265 1 . THR 266 1 . VAL 267 1 . ASP 268 1 . GLN 269 1 . THR 270 1 . THR 271 1 . GLY 272 1 . SER 273 1 . ILE 274 1 . THR 275 1 . LEU 276 1 . ARG 277 1 . ALA 278 1 . ILE 279 1 . PHE 280 1 . PRO 281 1 . ASN 282 1 . PRO 283 1 . ASP 284 1 . HIS 285 1 . THR 286 1 . LEU 287 1 . LEU 288 1 . PRO 289 1 . GLY 290 1 . MET 291 1 . PHE 292 1 . VAL 293 1 . ARG 294 1 . ALA 295 1 . ARG 296 1 . LEU 297 1 . GLU 298 1 . GLU 299 1 . GLY 300 1 . LEU 301 1 . ASN 302 1 . PRO 303 1 . ASN 304 1 . ALA 305 1 . ILE 306 1 . LEU 307 1 . VAL 308 1 . PRO 309 1 . GLN 310 1 . GLN 311 1 . GLY 312 1 . VAL 313 1 . THR 314 1 . ARG 315 1 . THR 316 1 . PRO 317 1 . ARG 318 1 . GLY 319 1 . ASP 320 1 . ALA 321 1 . THR 322 1 . VAL 323 1 . LEU 324 1 . VAL 325 1 . VAL 326 1 . GLY 327 1 . ALA 328 1 . ASP 329 1 . ASP 330 1 . LYS 331 1 . VAL 332 1 . GLU 333 1 . THR 334 1 . ARG 335 1 . PRO 336 1 . ILE 337 1 . VAL 338 1 . ALA 339 1 . SER 340 1 . GLN 341 1 . ALA 342 1 . ILE 343 1 . GLY 344 1 . ASP 345 1 . LYS 346 1 . TRP 347 1 . LEU 348 1 . VAL 349 1 . THR 350 1 . GLU 351 1 . GLY 352 1 . LEU 353 1 . LYS 354 1 . ALA 355 1 . GLY 356 1 . ASP 357 1 . ARG 358 1 . VAL 359 1 . VAL 360 1 . ILE 361 1 . SER 362 1 . GLY 363 1 . LEU 364 1 . GLN 365 1 . LYS 366 1 . VAL 367 1 . ARG 368 1 . PRO 369 1 . GLY 370 1 . VAL 371 1 . GLN 372 1 . VAL 373 1 . LYS 374 1 . ALA 375 1 . GLN 376 1 . GLU 377 1 . VAL 378 1 . THR 379 1 . ALA 380 1 . ASP 381 1 . ASN 382 1 . ASN 383 1 . GLN 384 1 . GLN 385 1 . ALA 386 1 . ALA 387 1 . SER 388 1 . GLY 389 1 . ALA 390 1 . GLN 391 1 . PRO 392 1 . GLU 393 1 . GLN 394 1 . SER 395 1 . LYS 396 1 . SER 397 # _ihm_chemical_component_descriptor.auth_name L-Photo-Leucine _ihm_chemical_component_descriptor.chemical_name . _ihm_chemical_component_descriptor.common_name L-Photo-Leucine _ihm_chemical_component_descriptor.details . _ihm_chemical_component_descriptor.id 1 _ihm_chemical_component_descriptor.inchi 1S/C5H9N3O2/c1-5(7-8-5)2-3(6)4(9)10/h3H,2,6H2,1H3,(H,9,10)/t3-/m0/s1 _ihm_chemical_component_descriptor.inchi_key MJRDGTVDJKACQZ-VKHMYHEASA-N _ihm_chemical_component_descriptor.smiles CC1(C[C@H](N)C(O)=O)N=N1 _ihm_chemical_component_descriptor.smiles_canonical . # loop_ _ihm_cross_link_list.comp_id_1 _ihm_cross_link_list.comp_id_2 _ihm_cross_link_list.dataset_list_id _ihm_cross_link_list.details _ihm_cross_link_list.entity_description_1 _ihm_cross_link_list.entity_description_2 _ihm_cross_link_list.entity_id_1 _ihm_cross_link_list.entity_id_2 _ihm_cross_link_list.group_id _ihm_cross_link_list.id _ihm_cross_link_list.linker_chem_comp_descriptor_id _ihm_cross_link_list.linker_type _ihm_cross_link_list.seq_id_1 _ihm_cross_link_list.seq_id_2 LEU GLU 1 . P0AE06 P0AE06 1 1 1 1 1 L-Photo-Leucine 226 299 GLU LEU 1 . P0AE06 P0AE06 1 1 2 2 1 L-Photo-Leucine 48 307 LEU SER 1 . P0AE06 P0AE06 1 1 3 3 1 L-Photo-Leucine 307 397 LEU GLN 1 . P0AE06 P0AE06 1 1 4 4 1 L-Photo-Leucine 307 394 GLU LEU 1 . P0AE06 P0AE06 1 1 5 5 1 L-Photo-Leucine 48 301 VAL LEU 1 . P0AE06 P0AE06 1 1 6 6 1 L-Photo-Leucine 244 301 LEU SER 1 . P0AE06 P0AE06 1 1 7 7 1 L-Photo-Leucine 50 397 # loop_ _ihm_cross_link_restraint.asym_id_1 _ihm_cross_link_restraint.asym_id_2 _ihm_cross_link_restraint.atom_id_1 _ihm_cross_link_restraint.atom_id_2 _ihm_cross_link_restraint.comp_id_1 _ihm_cross_link_restraint.comp_id_2 _ihm_cross_link_restraint.conditional_crosslink_flag _ihm_cross_link_restraint.distance_threshold _ihm_cross_link_restraint.entity_id_1 _ihm_cross_link_restraint.entity_id_2 _ihm_cross_link_restraint.group_id _ihm_cross_link_restraint.id _ihm_cross_link_restraint.model_granularity _ihm_cross_link_restraint.pseudo_site_flag _ihm_cross_link_restraint.psi _ihm_cross_link_restraint.restraint_type _ihm_cross_link_restraint.seq_id_1 _ihm_cross_link_restraint.seq_id_2 _ihm_cross_link_restraint.sigma_1 _ihm_cross_link_restraint.sigma_2 A A . . LEU GLU . 10 1 1 1 1 by-residue NO 0.05 "upper bound" 226 299 . . A A . . GLU LEU . 10 1 1 2 2 by-residue NO 0.05 "upper bound" 48 307 . . A A . . LEU SER . 10 1 1 3 3 by-residue NO 0.05 "upper bound" 307 397 . . A A . . LEU GLN . 10 1 1 4 4 by-residue NO 0.05 "upper bound" 307 394 . . A A . . GLU LEU . 10 1 1 5 5 by-residue NO 0.05 "upper bound" 48 301 . . A A . . VAL LEU . 10 1 1 6 6 by-residue NO 0.05 "upper bound" 244 301 . . A A . . LEU SER . 10 1 1 7 7 by-residue NO 0.05 "upper bound" 50 397 . . # _ihm_dataset_group.application . _ihm_dataset_group.details . _ihm_dataset_group.id 1 _ihm_dataset_group.name . # _ihm_dataset_group_link.dataset_list_id 1 _ihm_dataset_group_link.group_id 1 # _ihm_dataset_list.data_type "Crosslinking-MS data" _ihm_dataset_list.database_hosted YES _ihm_dataset_list.details . _ihm_dataset_list.id 1 # _ihm_dataset_related_db_reference.accession_code JPST001851 _ihm_dataset_related_db_reference.dataset_list_id 1 _ihm_dataset_related_db_reference.db_name jPOSTrepo _ihm_dataset_related_db_reference.details . _ihm_dataset_related_db_reference.id 1 _ihm_dataset_related_db_reference.version . # _ihm_entity_poly_segment.comp_id_begin MET _ihm_entity_poly_segment.comp_id_end SER _ihm_entity_poly_segment.entity_id 1 _ihm_entity_poly_segment.id 1 _ihm_entity_poly_segment.seq_id_begin 1 _ihm_entity_poly_segment.seq_id_end 397 # _ihm_model_group.details . _ihm_model_group.id 1 _ihm_model_group.name . # loop_ _ihm_model_group_link.group_id _ihm_model_group_link.model_id 1 1 1 2 1 3 1 4 1 5 1 6 1 7 1 8 1 9 1 10 # loop_ _ihm_model_list.assembly_id _ihm_model_list.model_id _ihm_model_list.model_name _ihm_model_list.protocol_id _ihm_model_list.representation_id 1 1 . 1 1 1 2 . 1 1 1 3 . 1 1 1 4 . 1 1 1 5 . 1 1 1 6 . 1 1 1 7 . 1 1 1 8 . 1 1 1 9 . 1 1 1 10 . 1 1 # _ihm_model_representation.details . _ihm_model_representation.id 1 _ihm_model_representation.name . # _ihm_model_representation_details.description . _ihm_model_representation_details.entity_asym_id A _ihm_model_representation_details.entity_description P0AE06 _ihm_model_representation_details.entity_id 1 _ihm_model_representation_details.entity_poly_segment_id 1 _ihm_model_representation_details.id 1 _ihm_model_representation_details.model_granularity by-atom _ihm_model_representation_details.model_mode flexible _ihm_model_representation_details.model_object_count . _ihm_model_representation_details.model_object_primitive atomistic _ihm_model_representation_details.representation_id 1 _ihm_model_representation_details.starting_model_id . # _ihm_modeling_protocol.details . _ihm_modeling_protocol.id 1 _ihm_modeling_protocol.num_steps 1 _ihm_modeling_protocol.protocol_name AlphaLink # _ihm_modeling_protocol_details.dataset_group_id 1 _ihm_modeling_protocol_details.description . _ihm_modeling_protocol_details.ensemble_flag YES _ihm_modeling_protocol_details.id 1 _ihm_modeling_protocol_details.multi_scale_flag NO _ihm_modeling_protocol_details.multi_state_flag NO _ihm_modeling_protocol_details.num_models_begin 0 _ihm_modeling_protocol_details.num_models_end 10 _ihm_modeling_protocol_details.ordered_flag NO _ihm_modeling_protocol_details.protocol_id 1 _ihm_modeling_protocol_details.script_file_id . _ihm_modeling_protocol_details.software_id . _ihm_modeling_protocol_details.step_id 1 _ihm_modeling_protocol_details.step_method "AlphaLink with 10 msa subsamples" _ihm_modeling_protocol_details.step_name AlphaLink _ihm_modeling_protocol_details.struct_assembly_description . _ihm_modeling_protocol_details.struct_assembly_id 1 # _ihm_struct_assembly.description "Integrative modeling using in-cell photo-crosslinking mass spectrometry and deep learning" _ihm_struct_assembly.id 1 _ihm_struct_assembly.name "Integrative model" # _ihm_struct_assembly_details.assembly_id 1 _ihm_struct_assembly_details.asym_id A _ihm_struct_assembly_details.entity_description P0AE06 _ihm_struct_assembly_details.entity_id 1 _ihm_struct_assembly_details.entity_poly_segment_id 1 _ihm_struct_assembly_details.id 1 _ihm_struct_assembly_details.parent_assembly_id 1 # _software.citation_id 1 _software.classification "model building" _software.description "protein structure prediction by deep learning assisted by experimental distance restraints" _software.location https://github.com/lhatsk/AlphaLink _software.name AlphaLink _software.pdbx_ordinal 1 _software.type program _software.version 1.0 # _struct.entry_id 9A2V _struct.pdbx_CASP_flag . _struct.pdbx_descriptor . _struct.pdbx_details . _struct.pdbx_model_details . _struct.pdbx_model_type_details . _struct.title "Model of E. coli AcrA by in-cell photo-crosslinking MS and deep learning" _struct.pdbx_structure_determination_methodology integrative # _struct_asym.details P0AE06 _struct_asym.entity_id 1 _struct_asym.id A _struct_asym.pdbx_PDB_id . _struct_asym.pdbx_alt_id . _struct_asym.pdbx_blank_PDB_chainid_flag . _struct_asym.pdbx_modified . _struct_asym.pdbx_order . _struct_asym.pdbx_type . # _struct_ref.db_code ACRA_ECOLI _struct_ref.db_name UNP _struct_ref.details "Multidrug efflux pump subunit AcrA OS=Escherichia coli (strain K12) OX=83333 GN=acrA PE=1 SV=1" _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P0AE06 _struct_ref.pdbx_seq_one_letter_code MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQPEQSKS # _struct_ref_seq.align_id 1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.db_align_end 397 _struct_ref_seq.ref_id 1 _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.seq_align_end 397 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 MET 1 1 MET MET A . A 1 2 ASN 2 2 ASN ASN A . A 1 3 LYS 3 3 LYS LYS A . A 1 4 ASN 4 4 ASN ASN A . A 1 5 ARG 5 5 ARG ARG A . A 1 6 GLY 6 6 GLY GLY A . A 1 7 PHE 7 7 PHE PHE A . A 1 8 THR 8 8 THR THR A . A 1 9 PRO 9 9 PRO PRO A . A 1 10 LEU 10 10 LEU LEU A . A 1 11 ALA 11 11 ALA ALA A . A 1 12 VAL 12 12 VAL VAL A . A 1 13 VAL 13 13 VAL VAL A . A 1 14 LEU 14 14 LEU LEU A . A 1 15 MET 15 15 MET MET A . A 1 16 LEU 16 16 LEU LEU A . A 1 17 SER 17 17 SER SER A . A 1 18 GLY 18 18 GLY GLY A . A 1 19 SER 19 19 SER SER A . A 1 20 LEU 20 20 LEU LEU A . A 1 21 ALA 21 21 ALA ALA A . A 1 22 LEU 22 22 LEU LEU A . A 1 23 THR 23 23 THR THR A . A 1 24 GLY 24 24 GLY GLY A . A 1 25 CYS 25 25 CYS CYS A . A 1 26 ASP 26 26 ASP ASP A . A 1 27 ASP 27 27 ASP ASP A . A 1 28 LYS 28 28 LYS LYS A . A 1 29 GLN 29 29 GLN GLN A . A 1 30 ALA 30 30 ALA ALA A . A 1 31 GLN 31 31 GLN GLN A . A 1 32 GLN 32 32 GLN GLN A . A 1 33 GLY 33 33 GLY GLY A . A 1 34 GLY 34 34 GLY GLY A . A 1 35 GLN 35 35 GLN GLN A . A 1 36 GLN 36 36 GLN GLN A . A 1 37 MET 37 37 MET MET A . A 1 38 PRO 38 38 PRO PRO A . A 1 39 ALA 39 39 ALA ALA A . A 1 40 VAL 40 40 VAL VAL A . A 1 41 GLY 41 41 GLY GLY A . A 1 42 VAL 42 42 VAL VAL A . A 1 43 VAL 43 43 VAL VAL A . A 1 44 THR 44 44 THR THR A . A 1 45 VAL 45 45 VAL VAL A . A 1 46 LYS 46 46 LYS LYS A . A 1 47 THR 47 47 THR THR A . A 1 48 GLU 48 48 GLU GLU A . A 1 49 PRO 49 49 PRO PRO A . A 1 50 LEU 50 50 LEU LEU A . A 1 51 GLN 51 51 GLN GLN A . A 1 52 ILE 52 52 ILE ILE A . A 1 53 THR 53 53 THR THR A . A 1 54 THR 54 54 THR THR A . A 1 55 GLU 55 55 GLU GLU A . A 1 56 LEU 56 56 LEU LEU A . A 1 57 PRO 57 57 PRO PRO A . A 1 58 GLY 58 58 GLY GLY A . A 1 59 ARG 59 59 ARG ARG A . A 1 60 THR 60 60 THR THR A . A 1 61 SER 61 61 SER SER A . A 1 62 ALA 62 62 ALA ALA A . A 1 63 TYR 63 63 TYR TYR A . A 1 64 ARG 64 64 ARG ARG A . A 1 65 ILE 65 65 ILE ILE A . A 1 66 ALA 66 66 ALA ALA A . A 1 67 GLU 67 67 GLU GLU A . A 1 68 VAL 68 68 VAL VAL A . A 1 69 ARG 69 69 ARG ARG A . A 1 70 PRO 70 70 PRO PRO A . A 1 71 GLN 71 71 GLN GLN A . A 1 72 VAL 72 72 VAL VAL A . A 1 73 SER 73 73 SER SER A . A 1 74 GLY 74 74 GLY GLY A . A 1 75 ILE 75 75 ILE ILE A . A 1 76 ILE 76 76 ILE ILE A . A 1 77 LEU 77 77 LEU LEU A . A 1 78 LYS 78 78 LYS LYS A . A 1 79 ARG 79 79 ARG ARG A . A 1 80 ASN 80 80 ASN ASN A . A 1 81 PHE 81 81 PHE PHE A . A 1 82 LYS 82 82 LYS LYS A . A 1 83 GLU 83 83 GLU GLU A . A 1 84 GLY 84 84 GLY GLY A . A 1 85 SER 85 85 SER SER A . A 1 86 ASP 86 86 ASP ASP A . A 1 87 ILE 87 87 ILE ILE A . A 1 88 GLU 88 88 GLU GLU A . A 1 89 ALA 89 89 ALA ALA A . A 1 90 GLY 90 90 GLY GLY A . A 1 91 VAL 91 91 VAL VAL A . A 1 92 SER 92 92 SER SER A . A 1 93 LEU 93 93 LEU LEU A . A 1 94 TYR 94 94 TYR TYR A . A 1 95 GLN 95 95 GLN GLN A . A 1 96 ILE 96 96 ILE ILE A . A 1 97 ASP 97 97 ASP ASP A . A 1 98 PRO 98 98 PRO PRO A . A 1 99 ALA 99 99 ALA ALA A . A 1 100 THR 100 100 THR THR A . A 1 101 TYR 101 101 TYR TYR A . A 1 102 GLN 102 102 GLN GLN A . A 1 103 ALA 103 103 ALA ALA A . A 1 104 THR 104 104 THR THR A . A 1 105 TYR 105 105 TYR TYR A . A 1 106 ASP 106 106 ASP ASP A . A 1 107 SER 107 107 SER SER A . A 1 108 ALA 108 108 ALA ALA A . A 1 109 LYS 109 109 LYS LYS A . A 1 110 GLY 110 110 GLY GLY A . A 1 111 ASP 111 111 ASP ASP A . A 1 112 LEU 112 112 LEU LEU A . A 1 113 ALA 113 113 ALA ALA A . A 1 114 LYS 114 114 LYS LYS A . A 1 115 ALA 115 115 ALA ALA A . A 1 116 GLN 116 116 GLN GLN A . A 1 117 ALA 117 117 ALA ALA A . A 1 118 ALA 118 118 ALA ALA A . A 1 119 ALA 119 119 ALA ALA A . A 1 120 ASN 120 120 ASN ASN A . A 1 121 ILE 121 121 ILE ILE A . A 1 122 ALA 122 122 ALA ALA A . A 1 123 GLN 123 123 GLN GLN A . A 1 124 LEU 124 124 LEU LEU A . A 1 125 THR 125 125 THR THR A . A 1 126 VAL 126 126 VAL VAL A . A 1 127 ASN 127 127 ASN ASN A . A 1 128 ARG 128 128 ARG ARG A . A 1 129 TYR 129 129 TYR TYR A . A 1 130 GLN 130 130 GLN GLN A . A 1 131 LYS 131 131 LYS LYS A . A 1 132 LEU 132 132 LEU LEU A . A 1 133 LEU 133 133 LEU LEU A . A 1 134 GLY 134 134 GLY GLY A . A 1 135 THR 135 135 THR THR A . A 1 136 GLN 136 136 GLN GLN A . A 1 137 TYR 137 137 TYR TYR A . A 1 138 ILE 138 138 ILE ILE A . A 1 139 SER 139 139 SER SER A . A 1 140 LYS 140 140 LYS LYS A . A 1 141 GLN 141 141 GLN GLN A . A 1 142 GLU 142 142 GLU GLU A . A 1 143 TYR 143 143 TYR TYR A . A 1 144 ASP 144 144 ASP ASP A . A 1 145 GLN 145 145 GLN GLN A . A 1 146 ALA 146 146 ALA ALA A . A 1 147 LEU 147 147 LEU LEU A . A 1 148 ALA 148 148 ALA ALA A . A 1 149 ASP 149 149 ASP ASP A . A 1 150 ALA 150 150 ALA ALA A . A 1 151 GLN 151 151 GLN GLN A . A 1 152 GLN 152 152 GLN GLN A . A 1 153 ALA 153 153 ALA ALA A . A 1 154 ASN 154 154 ASN ASN A . A 1 155 ALA 155 155 ALA ALA A . A 1 156 ALA 156 156 ALA ALA A . A 1 157 VAL 157 157 VAL VAL A . A 1 158 THR 158 158 THR THR A . A 1 159 ALA 159 159 ALA ALA A . A 1 160 ALA 160 160 ALA ALA A . A 1 161 LYS 161 161 LYS LYS A . A 1 162 ALA 162 162 ALA ALA A . A 1 163 ALA 163 163 ALA ALA A . A 1 164 VAL 164 164 VAL VAL A . A 1 165 GLU 165 165 GLU GLU A . A 1 166 THR 166 166 THR THR A . A 1 167 ALA 167 167 ALA ALA A . A 1 168 ARG 168 168 ARG ARG A . A 1 169 ILE 169 169 ILE ILE A . A 1 170 ASN 170 170 ASN ASN A . A 1 171 LEU 171 171 LEU LEU A . A 1 172 ALA 172 172 ALA ALA A . A 1 173 TYR 173 173 TYR TYR A . A 1 174 THR 174 174 THR THR A . A 1 175 LYS 175 175 LYS LYS A . A 1 176 VAL 176 176 VAL VAL A . A 1 177 THR 177 177 THR THR A . A 1 178 SER 178 178 SER SER A . A 1 179 PRO 179 179 PRO PRO A . A 1 180 ILE 180 180 ILE ILE A . A 1 181 SER 181 181 SER SER A . A 1 182 GLY 182 182 GLY GLY A . A 1 183 ARG 183 183 ARG ARG A . A 1 184 ILE 184 184 ILE ILE A . A 1 185 GLY 185 185 GLY GLY A . A 1 186 LYS 186 186 LYS LYS A . A 1 187 SER 187 187 SER SER A . A 1 188 ASN 188 188 ASN ASN A . A 1 189 VAL 189 189 VAL VAL A . A 1 190 THR 190 190 THR THR A . A 1 191 GLU 191 191 GLU GLU A . A 1 192 GLY 192 192 GLY GLY A . A 1 193 ALA 193 193 ALA ALA A . A 1 194 LEU 194 194 LEU LEU A . A 1 195 VAL 195 195 VAL VAL A . A 1 196 GLN 196 196 GLN GLN A . A 1 197 ASN 197 197 ASN ASN A . A 1 198 GLY 198 198 GLY GLY A . A 1 199 GLN 199 199 GLN GLN A . A 1 200 ALA 200 200 ALA ALA A . A 1 201 THR 201 201 THR THR A . A 1 202 ALA 202 202 ALA ALA A . A 1 203 LEU 203 203 LEU LEU A . A 1 204 ALA 204 204 ALA ALA A . A 1 205 THR 205 205 THR THR A . A 1 206 VAL 206 206 VAL VAL A . A 1 207 GLN 207 207 GLN GLN A . A 1 208 GLN 208 208 GLN GLN A . A 1 209 LEU 209 209 LEU LEU A . A 1 210 ASP 210 210 ASP ASP A . A 1 211 PRO 211 211 PRO PRO A . A 1 212 ILE 212 212 ILE ILE A . A 1 213 TYR 213 213 TYR TYR A . A 1 214 VAL 214 214 VAL VAL A . A 1 215 ASP 215 215 ASP ASP A . A 1 216 VAL 216 216 VAL VAL A . A 1 217 THR 217 217 THR THR A . A 1 218 GLN 218 218 GLN GLN A . A 1 219 SER 219 219 SER SER A . A 1 220 SER 220 220 SER SER A . A 1 221 ASN 221 221 ASN ASN A . A 1 222 ASP 222 222 ASP ASP A . A 1 223 PHE 223 223 PHE PHE A . A 1 224 LEU 224 224 LEU LEU A . A 1 225 ARG 225 225 ARG ARG A . A 1 226 LEU 226 226 LEU LEU A . A 1 227 LYS 227 227 LYS LYS A . A 1 228 GLN 228 228 GLN GLN A . A 1 229 GLU 229 229 GLU GLU A . A 1 230 LEU 230 230 LEU LEU A . A 1 231 ALA 231 231 ALA ALA A . A 1 232 ASN 232 232 ASN ASN A . A 1 233 GLY 233 233 GLY GLY A . A 1 234 THR 234 234 THR THR A . A 1 235 LEU 235 235 LEU LEU A . A 1 236 LYS 236 236 LYS LYS A . A 1 237 GLN 237 237 GLN GLN A . A 1 238 GLU 238 238 GLU GLU A . A 1 239 ASN 239 239 ASN ASN A . A 1 240 GLY 240 240 GLY GLY A . A 1 241 LYS 241 241 LYS LYS A . A 1 242 ALA 242 242 ALA ALA A . A 1 243 LYS 243 243 LYS LYS A . A 1 244 VAL 244 244 VAL VAL A . A 1 245 SER 245 245 SER SER A . A 1 246 LEU 246 246 LEU LEU A . A 1 247 ILE 247 247 ILE ILE A . A 1 248 THR 248 248 THR THR A . A 1 249 SER 249 249 SER SER A . A 1 250 ASP 250 250 ASP ASP A . A 1 251 GLY 251 251 GLY GLY A . A 1 252 ILE 252 252 ILE ILE A . A 1 253 LYS 253 253 LYS LYS A . A 1 254 PHE 254 254 PHE PHE A . A 1 255 PRO 255 255 PRO PRO A . A 1 256 GLN 256 256 GLN GLN A . A 1 257 ASP 257 257 ASP ASP A . A 1 258 GLY 258 258 GLY GLY A . A 1 259 THR 259 259 THR THR A . A 1 260 LEU 260 260 LEU LEU A . A 1 261 GLU 261 261 GLU GLU A . A 1 262 PHE 262 262 PHE PHE A . A 1 263 SER 263 263 SER SER A . A 1 264 ASP 264 264 ASP ASP A . A 1 265 VAL 265 265 VAL VAL A . A 1 266 THR 266 266 THR THR A . A 1 267 VAL 267 267 VAL VAL A . A 1 268 ASP 268 268 ASP ASP A . A 1 269 GLN 269 269 GLN GLN A . A 1 270 THR 270 270 THR THR A . A 1 271 THR 271 271 THR THR A . A 1 272 GLY 272 272 GLY GLY A . A 1 273 SER 273 273 SER SER A . A 1 274 ILE 274 274 ILE ILE A . A 1 275 THR 275 275 THR THR A . A 1 276 LEU 276 276 LEU LEU A . A 1 277 ARG 277 277 ARG ARG A . A 1 278 ALA 278 278 ALA ALA A . A 1 279 ILE 279 279 ILE ILE A . A 1 280 PHE 280 280 PHE PHE A . A 1 281 PRO 281 281 PRO PRO A . A 1 282 ASN 282 282 ASN ASN A . A 1 283 PRO 283 283 PRO PRO A . A 1 284 ASP 284 284 ASP ASP A . A 1 285 HIS 285 285 HIS HIS A . A 1 286 THR 286 286 THR THR A . A 1 287 LEU 287 287 LEU LEU A . A 1 288 LEU 288 288 LEU LEU A . A 1 289 PRO 289 289 PRO PRO A . A 1 290 GLY 290 290 GLY GLY A . A 1 291 MET 291 291 MET MET A . A 1 292 PHE 292 292 PHE PHE A . A 1 293 VAL 293 293 VAL VAL A . A 1 294 ARG 294 294 ARG ARG A . A 1 295 ALA 295 295 ALA ALA A . A 1 296 ARG 296 296 ARG ARG A . A 1 297 LEU 297 297 LEU LEU A . A 1 298 GLU 298 298 GLU GLU A . A 1 299 GLU 299 299 GLU GLU A . A 1 300 GLY 300 300 GLY GLY A . A 1 301 LEU 301 301 LEU LEU A . A 1 302 ASN 302 302 ASN ASN A . A 1 303 PRO 303 303 PRO PRO A . A 1 304 ASN 304 304 ASN ASN A . A 1 305 ALA 305 305 ALA ALA A . A 1 306 ILE 306 306 ILE ILE A . A 1 307 LEU 307 307 LEU LEU A . A 1 308 VAL 308 308 VAL VAL A . A 1 309 PRO 309 309 PRO PRO A . A 1 310 GLN 310 310 GLN GLN A . A 1 311 GLN 311 311 GLN GLN A . A 1 312 GLY 312 312 GLY GLY A . A 1 313 VAL 313 313 VAL VAL A . A 1 314 THR 314 314 THR THR A . A 1 315 ARG 315 315 ARG ARG A . A 1 316 THR 316 316 THR THR A . A 1 317 PRO 317 317 PRO PRO A . A 1 318 ARG 318 318 ARG ARG A . A 1 319 GLY 319 319 GLY GLY A . A 1 320 ASP 320 320 ASP ASP A . A 1 321 ALA 321 321 ALA ALA A . A 1 322 THR 322 322 THR THR A . A 1 323 VAL 323 323 VAL VAL A . A 1 324 LEU 324 324 LEU LEU A . A 1 325 VAL 325 325 VAL VAL A . A 1 326 VAL 326 326 VAL VAL A . A 1 327 GLY 327 327 GLY GLY A . A 1 328 ALA 328 328 ALA ALA A . A 1 329 ASP 329 329 ASP ASP A . A 1 330 ASP 330 330 ASP ASP A . A 1 331 LYS 331 331 LYS LYS A . A 1 332 VAL 332 332 VAL VAL A . A 1 333 GLU 333 333 GLU GLU A . A 1 334 THR 334 334 THR THR A . A 1 335 ARG 335 335 ARG ARG A . A 1 336 PRO 336 336 PRO PRO A . A 1 337 ILE 337 337 ILE ILE A . A 1 338 VAL 338 338 VAL VAL A . A 1 339 ALA 339 339 ALA ALA A . A 1 340 SER 340 340 SER SER A . A 1 341 GLN 341 341 GLN GLN A . A 1 342 ALA 342 342 ALA ALA A . A 1 343 ILE 343 343 ILE ILE A . A 1 344 GLY 344 344 GLY GLY A . A 1 345 ASP 345 345 ASP ASP A . A 1 346 LYS 346 346 LYS LYS A . A 1 347 TRP 347 347 TRP TRP A . A 1 348 LEU 348 348 LEU LEU A . A 1 349 VAL 349 349 VAL VAL A . A 1 350 THR 350 350 THR THR A . A 1 351 GLU 351 351 GLU GLU A . A 1 352 GLY 352 352 GLY GLY A . A 1 353 LEU 353 353 LEU LEU A . A 1 354 LYS 354 354 LYS LYS A . A 1 355 ALA 355 355 ALA ALA A . A 1 356 GLY 356 356 GLY GLY A . A 1 357 ASP 357 357 ASP ASP A . A 1 358 ARG 358 358 ARG ARG A . A 1 359 VAL 359 359 VAL VAL A . A 1 360 VAL 360 360 VAL VAL A . A 1 361 ILE 361 361 ILE ILE A . A 1 362 SER 362 362 SER SER A . A 1 363 GLY 363 363 GLY GLY A . A 1 364 LEU 364 364 LEU LEU A . A 1 365 GLN 365 365 GLN GLN A . A 1 366 LYS 366 366 LYS LYS A . A 1 367 VAL 367 367 VAL VAL A . A 1 368 ARG 368 368 ARG ARG A . A 1 369 PRO 369 369 PRO PRO A . A 1 370 GLY 370 370 GLY GLY A . A 1 371 VAL 371 371 VAL VAL A . A 1 372 GLN 372 372 GLN GLN A . A 1 373 VAL 373 373 VAL VAL A . A 1 374 LYS 374 374 LYS LYS A . A 1 375 ALA 375 375 ALA ALA A . A 1 376 GLN 376 376 GLN GLN A . A 1 377 GLU 377 377 GLU GLU A . A 1 378 VAL 378 378 VAL VAL A . A 1 379 THR 379 379 THR THR A . A 1 380 ALA 380 380 ALA ALA A . A 1 381 ASP 381 381 ASP ASP A . A 1 382 ASN 382 382 ASN ASN A . A 1 383 ASN 383 383 ASN ASN A . A 1 384 GLN 384 384 GLN GLN A . A 1 385 GLN 385 385 GLN GLN A . A 1 386 ALA 386 386 ALA ALA A . A 1 387 ALA 387 387 ALA ALA A . A 1 388 SER 388 388 SER SER A . A 1 389 GLY 389 389 GLY GLY A . A 1 390 ALA 390 390 ALA ALA A . A 1 391 GLN 391 391 GLN GLN A . A 1 392 PRO 392 392 PRO PRO A . A 1 393 GLU 393 393 GLU GLU A . A 1 394 GLN 394 394 GLN GLN A . A 1 395 SER 395 395 SER SER A . A 1 396 LYS 396 396 LYS LYS A . A 1 397 SER 397 397 SER SER A . # # loop_ # #