data_9A83 # _entry.id 9A83 # loop_ _atom_type.symbol C H N O S # loop_ _audit_author.name _audit_author.pdbx_ordinal "Karanth, M.N." 1 "Kirkpatrick, J. P." 2 "Carlomagno, T." 3 # loop_ _audit_conform.dict_location _audit_conform.dict_name _audit_conform.dict_version https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ihm_ext.dic mmcif_ihm_ext.dic 1.26 http://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic mmcif_pdbx.dic 5.395 # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB-Dev PDBDEV_00000368 PDBDEV_00000368 ? PDB 9A83 pdb_00009a83 10.2210/pdb9a83/pdb # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 9A83 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2024-02-05 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-06-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # # loop_ _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.type "C3 H7 N O2" 89.094 ALA . ALANINE . "L-peptide linking" "C6 H15 N4 O2 1" 175.212 ARG . ARGININE . "L-peptide linking" "C4 H8 N2 O3" 132.119 ASN . ASPARAGINE . "L-peptide linking" "C4 H7 N O4" 133.103 ASP . "ASPARTIC ACID" . "L-peptide linking" "C3 H7 N O2 S" 121.154 CYS . CYSTEINE . "L-peptide linking" "C5 H10 N2 O3" 146.146 GLN . GLUTAMINE . "L-peptide linking" "C5 H9 N O4" 147.13 GLU . "GLUTAMIC ACID" . "L-peptide linking" "C2 H5 N O2" 75.067 GLY . GLYCINE . "peptide linking" "C6 H10 N3 O2 1" 156.165 HIS . HISTIDINE . "L-peptide linking" "C6 H13 N O2" 131.175 ILE . ISOLEUCINE . "L-peptide linking" "C6 H13 N O2" 131.175 LEU . LEUCINE . "L-peptide linking" "C6 H15 N2 O2 1" 147.198 LYS . LYSINE . "L-peptide linking" "C5 H11 N O2 S" 149.208 MET . METHIONINE . "L-peptide linking" "C9 H11 N O2" 165.192 PHE . PHENYLALANINE . "L-peptide linking" "C5 H9 N O2" 115.132 PRO . PROLINE . "L-peptide linking" "C3 H7 N O3" 105.093 SER . SERINE . "L-peptide linking" "C4 H9 N O3" 119.12 THR . THREONINE . "L-peptide linking" "C11 H12 N2 O2" 204.229 TRP . TRYPTOPHAN . "L-peptide linking" "C5 H11 N O2" 117.148 VAL . VALINE . "L-peptide linking" # loop_ _citation.country _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_issue _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year . 1 "Sci. Adv." . . . . 10 . . 10.1126/sciadv.adm9404 38896613 "The specificity of intermodular recognition in a prototypical nonribosomal peptide synthetase depends on an adaptor domain" 2024 . 2 "J. Am. Chem. Soc." . . . 7 125 1731 1737 https://doi.org/10.1021/ja026939x . "HADDOCK: a protein-protein docking approach based on biochemical and/or biophysical information." 2003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal 1 "Karanth, M.N." 1 1 "Kirkpatrick, J. P." 2 1 "Krausze, J." 3 1 "Schmelz, S." 4 1 "Scrima, A." 5 1 "Carlomagno, T." 6 2 "Dominguez, C." 1 2 "Boelens, R." 2 2 "Bonvin, A.M.J.J." 3 # loop_ _entity.details _entity.formula_weight _entity.id _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.src_method _entity.type . 8906.706 1 "Adaptor BN91 domain of Tomaymycin B module " 1 MAN polymer "The substrate and the phosphopantetheinyl is omitted in the structure" 9264.988 2 "Substrate-loaded form of the peptidyl-carrier-protein (APCP) domain of the Tomaymycin A module" 1 MAN polymer # loop_ _entity_poly.entity_id _entity_poly.nstd_chirality _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_sequence_evidence_code _entity_poly.pdbx_strand_id _entity_poly.type 1 . NO NO SPLRTTVLDLARTTLGSADLTAHEPLADRCEHPALLDDLATTLTAVFAVEITGADLAAGATVADVAARMDDRR SPLRTTVLDLARTTLGSADLTAHEPLADRCEHPALLDDLATTLTAVFAVEITGADLAAGATVADVAARMDDRR . A polypeptide(L) 2 . NO NO NPLETVVLQAWKDISGADDFTTTDSFLGHGGNSLHFVQLASRLQKIFGVEVSTEDVFRHGTVEQLARFVEQS NPLETVVLQAWKDISGADDFTTTDSFLGHGGNSLHFVQLASRLQKIFGVEVSTEDVFRHGTVEQLARFVEQS . B polypeptide(L) # loop_ _entity_poly_seq.entity_id _entity_poly_seq.hetero _entity_poly_seq.mon_id _entity_poly_seq.num 1 . SER 1 1 . PRO 2 1 . LEU 3 1 . ARG 4 1 . THR 5 1 . THR 6 1 . VAL 7 1 . LEU 8 1 . ASP 9 1 . LEU 10 1 . ALA 11 1 . ARG 12 1 . THR 13 1 . THR 14 1 . LEU 15 1 . GLY 16 1 . SER 17 1 . ALA 18 1 . ASP 19 1 . LEU 20 1 . THR 21 1 . ALA 22 1 . HIS 23 1 . GLU 24 1 . PRO 25 1 . LEU 26 1 . ALA 27 1 . ASP 28 1 . ARG 29 1 . CYS 30 1 . GLU 31 1 . HIS 32 1 . PRO 33 1 . ALA 34 1 . LEU 35 1 . LEU 36 1 . ASP 37 1 . ASP 38 1 . LEU 39 1 . ALA 40 1 . THR 41 1 . THR 42 1 . LEU 43 1 . THR 44 1 . ALA 45 1 . VAL 46 1 . PHE 47 1 . ALA 48 1 . VAL 49 1 . GLU 50 1 . ILE 51 1 . THR 52 1 . GLY 53 1 . ALA 54 1 . ASP 55 1 . LEU 56 1 . ALA 57 1 . ALA 58 1 . GLY 59 1 . ALA 60 1 . THR 61 1 . VAL 62 1 . ALA 63 1 . ASP 64 1 . VAL 65 1 . ALA 66 1 . ALA 67 1 . ARG 68 1 . MET 69 1 . ASP 70 1 . ASP 71 1 . ARG 72 1 . ARG 73 2 . ASN 1 2 . PRO 2 2 . LEU 3 2 . GLU 4 2 . THR 5 2 . VAL 6 2 . VAL 7 2 . LEU 8 2 . GLN 9 2 . ALA 10 2 . TRP 11 2 . LYS 12 2 . ASP 13 2 . ILE 14 2 . SER 15 2 . GLY 16 2 . ALA 17 2 . ASP 18 2 . ASP 19 2 . PHE 20 2 . THR 21 2 . THR 22 2 . THR 23 2 . ASP 24 2 . SER 25 2 . PHE 26 2 . LEU 27 2 . GLY 28 2 . HIS 29 2 . GLY 30 2 . GLY 31 2 . ASN 32 2 . SER 33 2 . LEU 34 2 . HIS 35 2 . PHE 36 2 . VAL 37 2 . GLN 38 2 . LEU 39 2 . ALA 40 2 . SER 41 2 . ARG 42 2 . LEU 43 2 . GLN 44 2 . LYS 45 2 . ILE 46 2 . PHE 47 2 . GLY 48 2 . VAL 49 2 . GLU 50 2 . VAL 51 2 . SER 52 2 . THR 53 2 . GLU 54 2 . ASP 55 2 . VAL 56 2 . PHE 57 2 . ARG 58 2 . HIS 59 2 . GLY 60 2 . THR 61 2 . VAL 62 2 . GLU 63 2 . GLN 64 2 . LEU 65 2 . ALA 66 2 . ARG 67 2 . PHE 68 2 . VAL 69 2 . GLU 70 2 . GLN 71 2 . SER 72 # loop_ _ihm_dataset_group.application _ihm_dataset_group.details _ihm_dataset_group.id _ihm_dataset_group.name restraint . 1 "Docking restraints" other . 2 "All inputs for docking" # loop_ _ihm_dataset_group_link.dataset_list_id _ihm_dataset_group_link.group_id 1 1 1 2 2 2 3 2 # loop_ _ihm_dataset_list.data_type _ihm_dataset_list.database_hosted _ihm_dataset_list.details _ihm_dataset_list.id "NMR data" NO "Distance restraints for docking of the binary complex derived from Chemical shift perturbations" 1 "Experimental model" YES 8QSX 2 "Experimental model" YES 8QRX 3 # loop_ _ihm_dataset_related_db_reference.accession_code _ihm_dataset_related_db_reference.dataset_list_id _ihm_dataset_related_db_reference.db_name _ihm_dataset_related_db_reference.details _ihm_dataset_related_db_reference.id _ihm_dataset_related_db_reference.version 8QSX 2 PDB . 1 . 8QRX 3 PDB . 2 . # loop_ _ihm_derived_distance_restraint.dataset_list_id _ihm_derived_distance_restraint.distance_lower_limit _ihm_derived_distance_restraint.distance_lower_limit_esd _ihm_derived_distance_restraint.distance_threshold_esd _ihm_derived_distance_restraint.distance_threshold_mean _ihm_derived_distance_restraint.distance_upper_limit _ihm_derived_distance_restraint.distance_upper_limit_esd _ihm_derived_distance_restraint.feature_id_1 _ihm_derived_distance_restraint.feature_id_2 _ihm_derived_distance_restraint.group_conditionality _ihm_derived_distance_restraint.group_id _ihm_derived_distance_restraint.id _ihm_derived_distance_restraint.mic_value _ihm_derived_distance_restraint.probability _ihm_derived_distance_restraint.random_exclusion_fraction _ihm_derived_distance_restraint.restraint_type 1 0 . . . 2 . 1 2 ANY 1 1 . . . "lower and upper bound" 1 0 . . . 2 . 1 3 ANY 1 2 . . . "lower and upper bound" 1 0 . . . 2 . 1 4 ANY 1 3 . . . "lower and upper bound" 1 0 . . . 2 . 1 5 ANY 1 4 . . . "lower and upper bound" 1 0 . . . 2 . 1 6 ANY 1 5 . . . "lower and upper bound" 1 0 . . . 2 . 1 7 ANY 1 6 . . . "lower and upper bound" 1 0 . . . 2 . 1 8 ANY 1 7 . . . "lower and upper bound" 1 0 . . . 2 . 1 9 ANY 1 8 . . . "lower and upper bound" 1 0 . . . 2 . 1 10 ANY 1 9 . . . "lower and upper bound" 1 0 . . . 2 . 1 11 ANY 1 10 . . . "lower and upper bound" 1 0 . . . 2 . 1 12 ANY 1 11 . . . "lower and upper bound" 1 0 . . . 2 . 13 2 ANY 2 12 . . . "lower and upper bound" 1 0 . . . 2 . 13 3 ANY 2 13 . . . "lower and upper bound" 1 0 . . . 2 . 13 4 ANY 2 14 . . . "lower and upper bound" 1 0 . . . 2 . 13 5 ANY 2 15 . . . "lower and upper bound" 1 0 . . . 2 . 13 6 ANY 2 16 . . . "lower and upper bound" 1 0 . . . 2 . 13 7 ANY 2 17 . . . "lower and upper bound" 1 0 . . . 2 . 13 8 ANY 2 18 . . . "lower and upper bound" 1 0 . . . 2 . 13 9 ANY 2 19 . . . "lower and upper bound" 1 0 . . . 2 . 13 10 ANY 2 20 . . . "lower and upper bound" 1 0 . . . 2 . 13 11 ANY 2 21 . . . "lower and upper bound" 1 0 . . . 2 . 13 12 ANY 2 22 . . . "lower and upper bound" 1 0 . . . 2 . 14 2 ANY 3 23 . . . "lower and upper bound" 1 0 . . . 2 . 14 3 ANY 3 24 . . . "lower and upper bound" 1 0 . . . 2 . 14 4 ANY 3 25 . . . "lower and upper bound" 1 0 . . . 2 . 14 5 ANY 3 26 . . . "lower and upper bound" 1 0 . . . 2 . 14 6 ANY 3 27 . . . "lower and upper bound" 1 0 . . . 2 . 14 7 ANY 3 28 . . . "lower and upper bound" 1 0 . . . 2 . 14 8 ANY 3 29 . . . "lower and upper bound" 1 0 . . . 2 . 14 9 ANY 3 30 . . . "lower and upper bound" 1 0 . . . 2 . 14 10 ANY 3 31 . . . "lower and upper bound" 1 0 . . . 2 . 14 11 ANY 3 32 . . . "lower and upper bound" 1 0 . . . 2 . 14 12 ANY 3 33 . . . "lower and upper bound" 1 0 . . . 2 . 15 2 ANY 4 34 . . . "lower and upper bound" 1 0 . . . 2 . 15 3 ANY 4 35 . . . "lower and upper bound" 1 0 . . . 2 . 15 4 ANY 4 36 . . . "lower and upper bound" 1 0 . . . 2 . 15 5 ANY 4 37 . . . "lower and upper bound" 1 0 . . . 2 . 15 6 ANY 4 38 . . . "lower and upper bound" 1 0 . . . 2 . 15 7 ANY 4 39 . . . "lower and upper bound" 1 0 . . . 2 . 15 8 ANY 4 40 . . . "lower and upper bound" 1 0 . . . 2 . 15 9 ANY 4 41 . . . "lower and upper bound" 1 0 . . . 2 . 15 10 ANY 4 42 . . . "lower and upper bound" 1 0 . . . 2 . 15 11 ANY 4 43 . . . "lower and upper bound" 1 0 . . . 2 . 15 12 ANY 4 44 . . . "lower and upper bound" 1 0 . . . 2 . 16 2 ANY 5 45 . . . "lower and upper bound" 1 0 . . . 2 . 16 3 ANY 5 46 . . . "lower and upper bound" 1 0 . . . 2 . 16 4 ANY 5 47 . . . "lower and upper bound" 1 0 . . . 2 . 16 5 ANY 5 48 . . . "lower and upper bound" 1 0 . . . 2 . 16 6 ANY 5 49 . . . "lower and upper bound" 1 0 . . . 2 . 16 7 ANY 5 50 . . . "lower and upper bound" 1 0 . . . 2 . 16 8 ANY 5 51 . . . "lower and upper bound" 1 0 . . . 2 . 16 9 ANY 5 52 . . . "lower and upper bound" 1 0 . . . 2 . 16 10 ANY 5 53 . . . "lower and upper bound" 1 0 . . . 2 . 16 11 ANY 5 54 . . . "lower and upper bound" 1 0 . . . 2 . 16 12 ANY 5 55 . . . "lower and upper bound" 1 0 . . . 2 . 17 2 ANY 6 56 . . . "lower and upper bound" 1 0 . . . 2 . 17 3 ANY 6 57 . . . "lower and upper bound" 1 0 . . . 2 . 17 4 ANY 6 58 . . . "lower and upper bound" 1 0 . . . 2 . 17 5 ANY 6 59 . . . "lower and upper bound" 1 0 . . . 2 . 17 6 ANY 6 60 . . . "lower and upper bound" 1 0 . . . 2 . 17 7 ANY 6 61 . . . "lower and upper bound" 1 0 . . . 2 . 17 8 ANY 6 62 . . . "lower and upper bound" 1 0 . . . 2 . 17 9 ANY 6 63 . . . "lower and upper bound" 1 0 . . . 2 . 17 10 ANY 6 64 . . . "lower and upper bound" 1 0 . . . 2 . 17 11 ANY 6 65 . . . "lower and upper bound" 1 0 . . . 2 . 17 12 ANY 6 66 . . . "lower and upper bound" 1 0 . . . 2 . 2 1 ANY 7 67 . . . "lower and upper bound" 1 0 . . . 2 . 2 13 ANY 7 68 . . . "lower and upper bound" 1 0 . . . 2 . 2 14 ANY 7 69 . . . "lower and upper bound" 1 0 . . . 2 . 2 15 ANY 7 70 . . . "lower and upper bound" 1 0 . . . 2 . 2 16 ANY 7 71 . . . "lower and upper bound" 1 0 . . . 2 . 2 17 ANY 7 72 . . . "lower and upper bound" 1 0 . . . 2 . 2 18 ANY 7 73 . . . "lower and upper bound" 1 0 . . . 2 . 2 19 ANY 7 74 . . . "lower and upper bound" 1 0 . . . 2 . 2 20 ANY 7 75 . . . "lower and upper bound" 1 0 . . . 2 . 2 21 ANY 7 76 . . . "lower and upper bound" 1 0 . . . 2 . 2 22 ANY 7 77 . . . "lower and upper bound" 1 0 . . . 2 . 2 23 ANY 7 78 . . . "lower and upper bound" 1 0 . . . 2 . 2 24 ANY 7 79 . . . "lower and upper bound" 1 0 . . . 2 . 2 25 ANY 7 80 . . . "lower and upper bound" 1 0 . . . 2 . 2 26 ANY 7 81 . . . "lower and upper bound" 1 0 . . . 2 . 3 1 ANY 8 82 . . . "lower and upper bound" 1 0 . . . 2 . 3 13 ANY 8 83 . . . "lower and upper bound" 1 0 . . . 2 . 3 14 ANY 8 84 . . . "lower and upper bound" 1 0 . . . 2 . 3 15 ANY 8 85 . . . "lower and upper bound" 1 0 . . . 2 . 3 16 ANY 8 86 . . . "lower and upper bound" 1 0 . . . 2 . 3 17 ANY 8 87 . . . "lower and upper bound" 1 0 . . . 2 . 3 18 ANY 8 88 . . . "lower and upper bound" 1 0 . . . 2 . 3 19 ANY 8 89 . . . "lower and upper bound" 1 0 . . . 2 . 3 20 ANY 8 90 . . . "lower and upper bound" 1 0 . . . 2 . 3 21 ANY 8 91 . . . "lower and upper bound" 1 0 . . . 2 . 3 22 ANY 8 92 . . . "lower and upper bound" 1 0 . . . 2 . 3 23 ANY 8 93 . . . "lower and upper bound" 1 0 . . . 2 . 3 24 ANY 8 94 . . . "lower and upper bound" 1 0 . . . 2 . 3 25 ANY 8 95 . . . "lower and upper bound" 1 0 . . . 2 . 3 26 ANY 8 96 . . . "lower and upper bound" 1 0 . . . 2 . 4 1 ANY 9 97 . . . "lower and upper bound" 1 0 . . . 2 . 4 13 ANY 9 98 . . . "lower and upper bound" 1 0 . . . 2 . 4 14 ANY 9 99 . . . "lower and upper bound" 1 0 . . . 2 . 4 15 ANY 9 100 . . . "lower and upper bound" 1 0 . . . 2 . 4 16 ANY 9 101 . . . "lower and upper bound" 1 0 . . . 2 . 4 17 ANY 9 102 . . . "lower and upper bound" 1 0 . . . 2 . 4 18 ANY 9 103 . . . "lower and upper bound" 1 0 . . . 2 . 4 19 ANY 9 104 . . . "lower and upper bound" 1 0 . . . 2 . 4 20 ANY 9 105 . . . "lower and upper bound" 1 0 . . . 2 . 4 21 ANY 9 106 . . . "lower and upper bound" 1 0 . . . 2 . 4 22 ANY 9 107 . . . "lower and upper bound" 1 0 . . . 2 . 4 23 ANY 9 108 . . . "lower and upper bound" 1 0 . . . 2 . 4 24 ANY 9 109 . . . "lower and upper bound" 1 0 . . . 2 . 4 25 ANY 9 110 . . . "lower and upper bound" 1 0 . . . 2 . 4 26 ANY 9 111 . . . "lower and upper bound" 1 0 . . . 2 . 5 1 ANY 10 112 . . . "lower and upper bound" 1 0 . . . 2 . 5 13 ANY 10 113 . . . "lower and upper bound" 1 0 . . . 2 . 5 14 ANY 10 114 . . . "lower and upper bound" 1 0 . . . 2 . 5 15 ANY 10 115 . . . "lower and upper bound" 1 0 . . . 2 . 5 16 ANY 10 116 . . . "lower and upper bound" 1 0 . . . 2 . 5 17 ANY 10 117 . . . "lower and upper bound" 1 0 . . . 2 . 5 18 ANY 10 118 . . . "lower and upper bound" 1 0 . . . 2 . 5 19 ANY 10 119 . . . "lower and upper bound" 1 0 . . . 2 . 5 20 ANY 10 120 . . . "lower and upper bound" 1 0 . . . 2 . 5 21 ANY 10 121 . . . "lower and upper bound" 1 0 . . . 2 . 5 22 ANY 10 122 . . . "lower and upper bound" 1 0 . . . 2 . 5 23 ANY 10 123 . . . "lower and upper bound" 1 0 . . . 2 . 5 24 ANY 10 124 . . . "lower and upper bound" 1 0 . . . 2 . 5 25 ANY 10 125 . . . "lower and upper bound" 1 0 . . . 2 . 5 26 ANY 10 126 . . . "lower and upper bound" 1 0 . . . 2 . 6 1 ANY 11 127 . . . "lower and upper bound" 1 0 . . . 2 . 6 13 ANY 11 128 . . . "lower and upper bound" 1 0 . . . 2 . 6 14 ANY 11 129 . . . "lower and upper bound" 1 0 . . . 2 . 6 15 ANY 11 130 . . . "lower and upper bound" 1 0 . . . 2 . 6 16 ANY 11 131 . . . "lower and upper bound" 1 0 . . . 2 . 6 17 ANY 11 132 . . . "lower and upper bound" 1 0 . . . 2 . 6 18 ANY 11 133 . . . "lower and upper bound" 1 0 . . . 2 . 6 19 ANY 11 134 . . . "lower and upper bound" 1 0 . . . 2 . 6 20 ANY 11 135 . . . "lower and upper bound" 1 0 . . . 2 . 6 21 ANY 11 136 . . . "lower and upper bound" 1 0 . . . 2 . 6 22 ANY 11 137 . . . "lower and upper bound" 1 0 . . . 2 . 6 23 ANY 11 138 . . . "lower and upper bound" 1 0 . . . 2 . 6 24 ANY 11 139 . . . "lower and upper bound" 1 0 . . . 2 . 6 25 ANY 11 140 . . . "lower and upper bound" 1 0 . . . 2 . 6 26 ANY 11 141 . . . "lower and upper bound" 1 0 . . . 2 . 7 1 ANY 12 142 . . . "lower and upper bound" 1 0 . . . 2 . 7 13 ANY 12 143 . . . "lower and upper bound" 1 0 . . . 2 . 7 14 ANY 12 144 . . . "lower and upper bound" 1 0 . . . 2 . 7 15 ANY 12 145 . . . "lower and upper bound" 1 0 . . . 2 . 7 16 ANY 12 146 . . . "lower and upper bound" 1 0 . . . 2 . 7 17 ANY 12 147 . . . "lower and upper bound" 1 0 . . . 2 . 7 18 ANY 12 148 . . . "lower and upper bound" 1 0 . . . 2 . 7 19 ANY 12 149 . . . "lower and upper bound" 1 0 . . . 2 . 7 20 ANY 12 150 . . . "lower and upper bound" 1 0 . . . 2 . 7 21 ANY 12 151 . . . "lower and upper bound" 1 0 . . . 2 . 7 22 ANY 12 152 . . . "lower and upper bound" 1 0 . . . 2 . 7 23 ANY 12 153 . . . "lower and upper bound" 1 0 . . . 2 . 7 24 ANY 12 154 . . . "lower and upper bound" 1 0 . . . 2 . 7 25 ANY 12 155 . . . "lower and upper bound" 1 0 . . . 2 . 7 26 ANY 12 156 . . . "lower and upper bound" 1 0 . . . 2 . 8 1 ANY 13 157 . . . "lower and upper bound" 1 0 . . . 2 . 8 13 ANY 13 158 . . . "lower and upper bound" 1 0 . . . 2 . 8 14 ANY 13 159 . . . "lower and upper bound" 1 0 . . . 2 . 8 15 ANY 13 160 . . . "lower and upper bound" 1 0 . . . 2 . 8 16 ANY 13 161 . . . "lower and upper bound" 1 0 . . . 2 . 8 17 ANY 13 162 . . . "lower and upper bound" 1 0 . . . 2 . 8 18 ANY 13 163 . . . "lower and upper bound" 1 0 . . . 2 . 8 19 ANY 13 164 . . . "lower and upper bound" 1 0 . . . 2 . 8 20 ANY 13 165 . . . "lower and upper bound" 1 0 . . . 2 . 8 21 ANY 13 166 . . . "lower and upper bound" 1 0 . . . 2 . 8 22 ANY 13 167 . . . "lower and upper bound" 1 0 . . . 2 . 8 23 ANY 13 168 . . . "lower and upper bound" 1 0 . . . 2 . 8 24 ANY 13 169 . . . "lower and upper bound" 1 0 . . . 2 . 8 25 ANY 13 170 . . . "lower and upper bound" 1 0 . . . 2 . 8 26 ANY 13 171 . . . "lower and upper bound" # _ihm_ensemble_info.details . _ihm_ensemble_info.ensemble_clustering_feature . _ihm_ensemble_info.ensemble_clustering_method . _ihm_ensemble_info.ensemble_file_id . _ihm_ensemble_info.ensemble_id 1 _ihm_ensemble_info.ensemble_name . _ihm_ensemble_info.ensemble_precision_value . _ihm_ensemble_info.model_group_id 1 _ihm_ensemble_info.num_ensemble_models 10 _ihm_ensemble_info.num_ensemble_models_deposited 10 _ihm_ensemble_info.post_process_id . _ihm_ensemble_info.sub_sample_flag . _ihm_ensemble_info.sub_sampling_type . # loop_ _ihm_entity_poly_segment.comp_id_begin _ihm_entity_poly_segment.comp_id_end _ihm_entity_poly_segment.entity_id _ihm_entity_poly_segment.id _ihm_entity_poly_segment.seq_id_begin _ihm_entity_poly_segment.seq_id_end SER ARG 1 1 1 73 ASN SER 2 2 1 72 # loop_ _ihm_feature_list.details _ihm_feature_list.entity_type _ihm_feature_list.feature_id _ihm_feature_list.feature_type . polymer 1 residue . polymer 2 residue . polymer 3 residue . polymer 4 residue . polymer 5 residue . polymer 6 residue . polymer 7 residue . polymer 8 residue . polymer 9 residue . polymer 10 residue . polymer 11 residue . polymer 12 residue . polymer 13 residue . polymer 14 residue . polymer 15 residue . polymer 16 residue . polymer 17 residue . polymer 18 residue . polymer 19 residue . polymer 20 residue . polymer 21 residue . polymer 22 residue . polymer 23 residue . polymer 24 residue . polymer 25 residue . polymer 26 residue # _ihm_model_group.details . _ihm_model_group.id 1 _ihm_model_group.name . # loop_ _ihm_model_group_link.group_id _ihm_model_group_link.model_id 1 1 1 2 1 3 1 4 1 5 1 6 1 7 1 8 1 9 1 10 # loop_ _ihm_model_list.assembly_id _ihm_model_list.model_id _ihm_model_list.model_name _ihm_model_list.protocol_id _ihm_model_list.representation_id 1 1 . 1 1 1 2 . 1 1 1 3 . 1 1 1 4 . 1 1 1 5 . 1 1 1 6 . 1 1 1 7 . 1 1 1 8 . 1 1 1 9 . 1 1 1 10 . 1 1 # _ihm_model_representation.details . _ihm_model_representation.id 1 _ihm_model_representation.name . # loop_ _ihm_model_representation_details.description _ihm_model_representation_details.entity_asym_id _ihm_model_representation_details.entity_description _ihm_model_representation_details.entity_id _ihm_model_representation_details.entity_poly_segment_id _ihm_model_representation_details.id _ihm_model_representation_details.model_granularity _ihm_model_representation_details.model_mode _ihm_model_representation_details.model_object_count _ihm_model_representation_details.model_object_primitive _ihm_model_representation_details.representation_id _ihm_model_representation_details.starting_model_id . A . 1 1 1 by-atom flexible . atomistic 1 1 . B . 2 2 2 by-atom flexible . atomistic 1 2 # _ihm_model_representative.id 1 _ihm_model_representative.model_group_id 1 _ihm_model_representative.model_id 1 _ihm_model_representative.selection_criteria "best scoring model" # _ihm_modeling_protocol.details "One HADDOCK runs (stage)" _ihm_modeling_protocol.id 1 _ihm_modeling_protocol.num_steps 1 _ihm_modeling_protocol.protocol_name "Data-driven docking using CSP-derived distance restraints within HADDOCK." # _ihm_modeling_protocol_details.dataset_group_id 2 _ihm_modeling_protocol_details.description "Data-driven docking using CSP-derived distance restraints within HADDOCK." _ihm_modeling_protocol_details.ensemble_flag YES _ihm_modeling_protocol_details.id 1 _ihm_modeling_protocol_details.multi_scale_flag NO _ihm_modeling_protocol_details.multi_state_flag NO _ihm_modeling_protocol_details.num_models_begin . _ihm_modeling_protocol_details.num_models_end . _ihm_modeling_protocol_details.ordered_flag NO _ihm_modeling_protocol_details.protocol_id 1 _ihm_modeling_protocol_details.script_file_id . _ihm_modeling_protocol_details.software_id 1 _ihm_modeling_protocol_details.step_id 1 _ihm_modeling_protocol_details.step_method "Data-driven docking using CSP-derived distance restraints within HADDOCK." _ihm_modeling_protocol_details.step_name . _ihm_modeling_protocol_details.struct_assembly_description . _ihm_modeling_protocol_details.struct_assembly_id 1 # loop_ _ihm_poly_residue_feature.asym_id _ihm_poly_residue_feature.comp_id_begin _ihm_poly_residue_feature.comp_id_end _ihm_poly_residue_feature.entity_id _ihm_poly_residue_feature.feature_id _ihm_poly_residue_feature.interface_residue_flag _ihm_poly_residue_feature.ordinal_id _ihm_poly_residue_feature.rep_atom _ihm_poly_residue_feature.residue_range_granularity _ihm_poly_residue_feature.seq_id_begin _ihm_poly_residue_feature.seq_id_end B ASN ASN 2 1 . 1 . . 1 1 A ARG ARG 1 2 . 2 . . 4 4 A THR THR 1 3 . 3 . . 5 5 A THR THR 1 4 . 4 . . 6 6 A PHE PHE 1 5 . 5 . . 47 47 A ALA ALA 1 6 . 6 . . 48 48 A ASP ASP 1 7 . 7 . . 71 71 A ARG ARG 1 8 . 8 . . 72 72 A SER SER 1 9 . 9 . . 1 1 A PRO PRO 1 10 . 10 . . 2 2 A LEU LEU 1 11 . 11 . . 3 3 A ARG ARG 1 12 . 12 . . 73 73 B THR THR 2 13 . 13 . . 5 5 B VAL VAL 2 14 . 14 . . 6 6 B GLY GLY 2 15 . 15 . . 48 48 B GLU GLU 2 16 . 16 . . 63 63 B PHE PHE 2 17 . 17 . . 68 68 B PRO PRO 2 18 . 18 . . 2 2 B GLU GLU 2 19 . 19 . . 4 4 B VAL VAL 2 20 . 20 . . 7 7 B ILE ILE 2 21 . 21 . . 46 46 B PHE PHE 2 22 . 22 . . 47 47 B ALA ALA 2 23 . 23 . . 66 66 B VAL VAL 2 24 . 24 . . 69 69 B GLU GLU 2 25 . 25 . . 70 70 B GLN GLN 2 26 . 26 . . 71 71 # loop_ _ihm_starting_model_details.asym_id _ihm_starting_model_details.dataset_list_id _ihm_starting_model_details.description _ihm_starting_model_details.entity_description _ihm_starting_model_details.entity_id _ihm_starting_model_details.entity_poly_segment_id _ihm_starting_model_details.starting_model_auth_asym_id _ihm_starting_model_details.starting_model_id _ihm_starting_model_details.starting_model_sequence_offset _ihm_starting_model_details.starting_model_source A 2 . "Ensemble of structures of BN91" 1 1 A 1 -6 "experimental model" B 3 . "Ensemble of structures of APCP" 2 2 B 2 -8 "experimental model" # _ihm_struct_assembly.description "Encounter complex in the cross-modular condensation step of the Tomaymycin NRPS system: complex of the substrate-loaded peptidyl-carrier-protein domain from the TomA module (APCP-load) with the adaptor (BN91) of the TomB module modeled using HADDOCK based on distance restraints derived from NMR CSPs" _ihm_struct_assembly.id 1 _ihm_struct_assembly.name "Encounter complex in the cross-modular condensation step of the Tomaymycin NRPS system: complex of the substrate-loaded peptidyl-carrier-protein domain from the TomA module (APCP-load) with the adaptor (BN91) of the TomB module" # loop_ _ihm_struct_assembly_details.assembly_id _ihm_struct_assembly_details.asym_id _ihm_struct_assembly_details.entity_description _ihm_struct_assembly_details.entity_id _ihm_struct_assembly_details.entity_poly_segment_id _ihm_struct_assembly_details.id _ihm_struct_assembly_details.parent_assembly_id 1 A . 1 1 1 1 1 B . 2 2 2 1 # _software.citation_id 2 _software.classification "Data-driven docking" _software.description "High-ambiguity driven biomolecular docking based on biochemical and/or biophysical information." _software.location https://wenmr.science.uu.nl/haddock2.4/ _software.name HADDOCK _software.pdbx_ordinal 1 _software.type program _software.version 2.4 # _struct.entry_id 9A83 _struct.pdbx_CASP_flag N _struct.pdbx_descriptor . _struct.pdbx_details "APCP-load structure has the phosphopantetheinyl arm omitted for clarity" _struct.pdbx_model_details "Models were generated with HADDOCK based on distance restraints derived from NMR CSPs" _struct.pdbx_model_type_details "The ensemble comprises the lowest-scoring ten structures. " _struct.title "Encounter complex in the cross-modular condensation step of the Tomaymycin NRPS system: complex of the substrate-loaded peptidyl-carrier-protein domain from the TomA module (APCP-load) with the adaptor (BN91) of the TomB module" _struct.pdbx_structure_determination_methodology integrative # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_PDB_id _struct_asym.pdbx_alt_id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.pdbx_order _struct_asym.pdbx_type . 1 A . . . . . . . 2 B . . . . . . # loop_ _struct_ref.db_code _struct_ref.db_name _struct_ref.details _struct_ref.entity_id _struct_ref.id _struct_ref.pdbx_align_begin _struct_ref.pdbx_align_end _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 8QRX PDB . 2 1 9 80 8QRX . . 8QSX PDB . 1 2 7 79 8QSX . . # loop_ _struct_ref_seq.align_id _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end 1 7 79 2 1 73 2 9 80 1 1 72 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 SER 3 3 SER SER A . A 1 2 PRO 4 4 PRO PRO A . A 1 3 LEU 5 5 LEU LEU A . A 1 4 ARG 6 6 ARG ARG A . A 1 5 THR 7 7 THR THR A . A 1 6 THR 8 8 THR THR A . A 1 7 VAL 9 9 VAL VAL A . A 1 8 LEU 10 10 LEU LEU A . A 1 9 ASP 11 11 ASP ASP A . A 1 10 LEU 12 12 LEU LEU A . A 1 11 ALA 13 13 ALA ALA A . A 1 12 ARG 14 14 ARG ARG A . A 1 13 THR 15 15 THR THR A . A 1 14 THR 16 16 THR THR A . A 1 15 LEU 17 17 LEU LEU A . A 1 16 GLY 18 18 GLY GLY A . A 1 17 SER 19 19 SER SER A . A 1 18 ALA 20 20 ALA ALA A . A 1 19 ASP 21 21 ASP ASP A . A 1 20 LEU 22 22 LEU LEU A . A 1 21 THR 23 23 THR THR A . A 1 22 ALA 24 24 ALA ALA A . A 1 23 HIS 25 25 HIS HIS A . A 1 24 GLU 26 26 GLU GLU A . A 1 25 PRO 27 27 PRO PRO A . A 1 26 LEU 28 28 LEU LEU A . A 1 27 ALA 29 29 ALA ALA A . A 1 28 ASP 30 30 ASP ASP A . A 1 29 ARG 31 31 ARG ARG A . A 1 30 CYS 32 32 CYS CYS A . A 1 31 GLU 33 33 GLU GLU A . A 1 32 HIS 34 34 HIS HIS A . A 1 33 PRO 35 35 PRO PRO A . A 1 34 ALA 36 36 ALA ALA A . A 1 35 LEU 37 37 LEU LEU A . A 1 36 LEU 38 38 LEU LEU A . A 1 37 ASP 39 39 ASP ASP A . A 1 38 ASP 40 40 ASP ASP A . A 1 39 LEU 41 41 LEU LEU A . A 1 40 ALA 42 42 ALA ALA A . A 1 41 THR 43 43 THR THR A . A 1 42 THR 44 44 THR THR A . A 1 43 LEU 45 45 LEU LEU A . A 1 44 THR 46 46 THR THR A . A 1 45 ALA 47 47 ALA ALA A . A 1 46 VAL 48 48 VAL VAL A . A 1 47 PHE 49 49 PHE PHE A . A 1 48 ALA 50 50 ALA ALA A . A 1 49 VAL 51 51 VAL VAL A . A 1 50 GLU 52 52 GLU GLU A . A 1 51 ILE 53 53 ILE ILE A . A 1 52 THR 54 54 THR THR A . A 1 53 GLY 55 55 GLY GLY A . A 1 54 ALA 56 56 ALA ALA A . A 1 55 ASP 57 57 ASP ASP A . A 1 56 LEU 58 58 LEU LEU A . A 1 57 ALA 59 59 ALA ALA A . A 1 58 ALA 60 60 ALA ALA A . A 1 59 GLY 61 61 GLY GLY A . A 1 60 ALA 62 62 ALA ALA A . A 1 61 THR 63 63 THR THR A . A 1 62 VAL 64 64 VAL VAL A . A 1 63 ALA 65 65 ALA ALA A . A 1 64 ASP 66 66 ASP ASP A . A 1 65 VAL 67 67 VAL VAL A . A 1 66 ALA 68 68 ALA ALA A . A 1 67 ALA 69 69 ALA ALA A . A 1 68 ARG 70 70 ARG ARG A . A 1 69 MET 71 71 MET MET A . A 1 70 ASP 72 72 ASP ASP A . A 1 71 ASP 73 73 ASP ASP A . A 1 72 ARG 74 74 ARG ARG A . A 1 73 ARG 75 75 ARG ARG A . B 2 1 ASN 5 5 ASN ASN B . B 2 2 PRO 6 6 PRO PRO B . B 2 3 LEU 7 7 LEU LEU B . B 2 4 GLU 8 8 GLU GLU B . B 2 5 THR 9 9 THR THR B . B 2 6 VAL 10 10 VAL VAL B . B 2 7 VAL 11 11 VAL VAL B . B 2 8 LEU 12 12 LEU LEU B . B 2 9 GLN 13 13 GLN GLN B . B 2 10 ALA 14 14 ALA ALA B . B 2 11 TRP 15 15 TRP TRP B . B 2 12 LYS 16 16 LYS LYS B . B 2 13 ASP 17 17 ASP ASP B . B 2 14 ILE 18 18 ILE ILE B . B 2 15 SER 19 19 SER SER B . B 2 16 GLY 20 20 GLY GLY B . B 2 17 ALA 21 21 ALA ALA B . B 2 18 ASP 22 22 ASP ASP B . B 2 19 ASP 23 23 ASP ASP B . B 2 20 PHE 24 24 PHE PHE B . B 2 21 THR 25 25 THR THR B . B 2 22 THR 26 26 THR THR B . B 2 23 THR 27 27 THR THR B . B 2 24 ASP 28 28 ASP ASP B . B 2 25 SER 29 29 SER SER B . B 2 26 PHE 30 30 PHE PHE B . B 2 27 LEU 31 31 LEU LEU B . B 2 28 GLY 32 32 GLY GLY B . B 2 29 HIS 33 33 HIS HIS B . B 2 30 GLY 34 34 GLY GLY B . B 2 31 GLY 35 35 GLY GLY B . B 2 32 ASN 36 36 ASN ASN B . B 2 33 SER 37 37 SER SER B . B 2 34 LEU 38 38 LEU LEU B . B 2 35 HIS 39 39 HIS HIS B . B 2 36 PHE 40 40 PHE PHE B . B 2 37 VAL 41 41 VAL VAL B . B 2 38 GLN 42 42 GLN GLN B . B 2 39 LEU 43 43 LEU LEU B . B 2 40 ALA 44 44 ALA ALA B . B 2 41 SER 45 45 SER SER B . B 2 42 ARG 46 46 ARG ARG B . B 2 43 LEU 47 47 LEU LEU B . B 2 44 GLN 48 48 GLN GLN B . B 2 45 LYS 49 49 LYS LYS B . B 2 46 ILE 50 50 ILE ILE B . B 2 47 PHE 51 51 PHE PHE B . B 2 48 GLY 52 52 GLY GLY B . B 2 49 VAL 53 53 VAL VAL B . B 2 50 GLU 54 54 GLU GLU B . B 2 51 VAL 55 55 VAL VAL B . B 2 52 SER 56 56 SER SER B . B 2 53 THR 57 57 THR THR B . B 2 54 GLU 58 58 GLU GLU B . B 2 55 ASP 59 59 ASP ASP B . B 2 56 VAL 60 60 VAL VAL B . B 2 57 PHE 61 61 PHE PHE B . B 2 58 ARG 62 62 ARG ARG B . B 2 59 HIS 63 63 HIS HIS B . B 2 60 GLY 64 64 GLY GLY B . B 2 61 THR 65 65 THR THR B . B 2 62 VAL 66 66 VAL VAL B . B 2 63 GLU 67 67 GLU GLU B . B 2 64 GLN 68 68 GLN GLN B . B 2 65 LEU 69 69 LEU LEU B . B 2 66 ALA 70 70 ALA ALA B . B 2 67 ARG 71 71 ARG ARG B . B 2 68 PHE 72 72 PHE PHE B . B 2 69 VAL 73 73 VAL VAL B . B 2 70 GLU 74 74 GLU GLU B . B 2 71 GLN 75 75 GLN GLN B . B 2 72 SER 76 76 SER SER B . # # loop_ # #