HEADER DNA BINDING PROTEIN/DNA/RNA 22-FEB-24 9AR7 TITLE CRYOEM STRUCTURE OF THERMOCAS9 BOUND WITH TARGET DNA STRAND ONLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE GUIDE RNA; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CLEAVED 3' TARGET DNA STRAND; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CLEAVED 5' TARGET STRAND; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS9; COMPND 15 CHAIN: A; COMPND 16 EC: 3.1.-.-; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS; SOURCE 4 ORGANISM_TAXID: 33940; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS; SOURCE 8 ORGANISM_TAXID: 33940; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS; SOURCE 12 ORGANISM_TAXID: 33940; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS; SOURCE 15 ORGANISM_TAXID: 33940; SOURCE 16 GENE: CAS9-2, CAS9, GTHT12_03401; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRISPR-CAS9; CAS9; EPIGENETICS; ENDONUCLEASE; HNH; RUVC; METAL KEYWDS 2 BINDING; RNA, DNA BINDING PROTEIN-DNA-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Y.ZHAO,Y.SHU,H.LI REVDAT 1 26-FEB-25 9AR7 0 JRNL AUTH M.ROTH,Y.SHU,D.TRASANDIDOU,Y.ZHAO,J.VAN DER OOST,H.LI JRNL TITL MOLECULAR BASIS FOR EPIGENETIC-SENSITIVE EDITING BY CAS9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.520 REMARK 3 NUMBER OF PARTICLES : 208337 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9AR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000281285. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF THERMOCAS9 REMARK 245 WITH RNA AND DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 820.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G B 1 REMARK 465 U B 72 REMARK 465 A B 73 REMARK 465 C B 110 REMARK 465 G B 111 REMARK 465 C B 112 REMARK 465 C B 113 REMARK 465 C B 114 REMARK 465 G B 115 REMARK 465 C B 116 REMARK 465 U B 117 REMARK 465 U B 118 REMARK 465 U B 119 REMARK 465 C B 120 REMARK 465 U B 121 REMARK 465 U B 122 REMARK 465 C B 123 REMARK 465 G B 124 REMARK 465 G B 125 REMARK 465 G B 126 REMARK 465 C B 127 REMARK 465 A B 128 REMARK 465 U B 129 REMARK 465 C B 138 REMARK 465 U B 139 REMARK 465 U B 140 REMARK 465 U B 147 REMARK 465 U B 148 REMARK 465 U B 149 REMARK 465 DA C 1 REMARK 465 DG C 2 REMARK 465 DC C 3 REMARK 465 DT C 4 REMARK 465 DT C 5 REMARK 465 DG C 6 REMARK 465 DG C 7 REMARK 465 DT C 8 REMARK 465 DG C 9 REMARK 465 DT C 10 REMARK 465 DA C 11 REMARK 465 DT C 12 REMARK 465 DA C 13 REMARK 465 DC C 14 REMARK 465 DA C 40 REMARK 465 DA P 1 REMARK 465 DG P 2 REMARK 465 DC P 3 REMARK 465 DT P 4 REMARK 465 DT P 5 REMARK 465 DG P 6 REMARK 465 DG P 7 REMARK 465 DT P 8 REMARK 465 DG P 9 REMARK 465 DT P 10 REMARK 465 DA P 11 REMARK 465 DT P 12 REMARK 465 GLU A 134 REMARK 465 ARG A 135 REMARK 465 THR A 136 REMARK 465 ASN A 137 REMARK 465 LYS A 138 REMARK 465 GLU A 139 REMARK 465 ASN A 140 REMARK 465 SER A 141 REMARK 465 THR A 142 REMARK 465 MET A 143 REMARK 465 LEU A 144 REMARK 465 LYS A 145 REMARK 465 HIS A 146 REMARK 465 ILE A 147 REMARK 465 GLU A 148 REMARK 465 GLU A 149 REMARK 465 ASN A 150 REMARK 465 GLN A 151 REMARK 465 SER A 152 REMARK 465 ILE A 153 REMARK 465 LEU A 154 REMARK 465 SER A 155 REMARK 465 SER A 156 REMARK 465 TYR A 157 REMARK 465 ARG A 158 REMARK 465 THR A 159 REMARK 465 VAL A 160 REMARK 465 ALA A 161 REMARK 465 GLU A 162 REMARK 465 MET A 163 REMARK 465 VAL A 164 REMARK 465 VAL A 165 REMARK 465 LYS A 166 REMARK 465 ASP A 167 REMARK 465 PRO A 168 REMARK 465 LYS A 169 REMARK 465 PHE A 170 REMARK 465 SER A 171 REMARK 465 LEU A 172 REMARK 465 HIS A 173 REMARK 465 LYS A 174 REMARK 465 ARG A 175 REMARK 465 ASN A 176 REMARK 465 LYS A 177 REMARK 465 GLU A 178 REMARK 465 ASP A 179 REMARK 465 ASN A 180 REMARK 465 TYR A 181 REMARK 465 THR A 182 REMARK 465 ASN A 183 REMARK 465 THR A 184 REMARK 465 SER A 1071 REMARK 465 HIS A 1072 REMARK 465 SER A 1073 REMARK 465 LYS A 1074 REMARK 465 ALA A 1075 REMARK 465 GLY A 1076 REMARK 465 GLU A 1077 REMARK 465 THR A 1078 REMARK 465 ILE A 1079 REMARK 465 ARG A 1080 REMARK 465 PRO A 1081 REMARK 465 LEU A 1082 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U B 74 N1 - C2 - O2 ANGL. DEV. = 6.3 DEGREES REMARK 500 U B 74 N3 - C2 - O2 ANGL. DEV. = -5.8 DEGREES REMARK 500 U B 74 C6 - N1 - C1' ANGL. DEV. = -8.5 DEGREES REMARK 500 U B 74 C2 - N1 - C1' ANGL. DEV. = 11.3 DEGREES REMARK 500 A B 75 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 C B 103 C2 - N1 - C1' ANGL. DEV. = 6.8 DEGREES REMARK 500 C B 144 N1 - C2 - O2 ANGL. DEV. = 4.4 DEGREES REMARK 500 C B 144 C2 - N1 - C1' ANGL. DEV. = 7.2 DEGREES REMARK 500 LEU A 305 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ASP A 546 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 36 33.04 -94.58 REMARK 500 ARG A 321 -9.94 72.53 REMARK 500 LYS A 417 149.12 67.96 REMARK 500 LYS A 454 -158.65 55.37 REMARK 500 LYS A 456 -110.60 53.36 REMARK 500 LEU A 538 -146.68 61.22 REMARK 500 TYR A 594 48.43 -90.87 REMARK 500 PHE A 637 -71.46 -112.93 REMARK 500 SER A 638 177.03 176.76 REMARK 500 ARG A 745 58.40 -94.76 REMARK 500 SER A 830 -1.18 66.85 REMARK 500 ASP A 860 79.27 -161.27 REMARK 500 SER A 924 -61.31 -92.86 REMARK 500 ASP A 973 -6.48 74.51 REMARK 500 ARG A 977 -62.15 -95.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 93 OP1 REMARK 620 2 HOH B 304 O 97.5 REMARK 620 3 THR A 478 OG1 107.9 116.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 101 OP2 REMARK 620 2 HOH B 303 O 69.1 REMARK 620 3 HOH B 307 O 95.0 103.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 102 OP1 REMARK 620 2 HOH B 308 O 118.7 REMARK 620 3 THR A 812 OG1 117.4 111.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 15 OP2 REMARK 620 2 DC P 14 O3' 76.8 REMARK 620 3 ASP A 581 OD2 70.8 121.8 REMARK 620 4 HOH A1208 O 97.9 103.0 128.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43772 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF THERMOCAS9 BOUND WITH TARGET DNA STRAND ONLY DBREF 9AR7 B 1 149 PDB 9AR7 9AR7 1 149 DBREF 9AR7 C 1 40 PDB 9AR7 9AR7 1 40 DBREF 9AR7 P 1 14 PDB 9AR7 9AR7 1 14 DBREF1 9AR7 A 1 1082 UNP A0A1W6VMQ3_GEOTD DBREF2 9AR7 A A0A1W6VMQ3 1 1082 SEQRES 1 B 149 G G U A G G A U G G C A A SEQRES 2 B 149 G A U C C U G G U A G U C SEQRES 3 B 149 A U A G U U C C C C U G G SEQRES 4 B 149 A A A C A G G G U U A C U SEQRES 5 B 149 A U G A U A A G G G C U U SEQRES 6 B 149 U C U G C C U A U A G G C SEQRES 7 B 149 A G A C U G A C C C G U G SEQRES 8 B 149 G C G U U G G G G A U C G SEQRES 9 B 149 C C U A U C G C C C G C U SEQRES 10 B 149 U U C U U C G G G C A U U SEQRES 11 B 149 C C C C A C U C U U A G G SEQRES 12 B 149 C G U U U U SEQRES 1 C 40 DA DG DC DT DT DG DG DT DG DT DA DT DA SEQRES 2 C 40 DC DC DA DG DG DA DT DC DT DT DG DC DC SEQRES 3 C 40 DA DT DC DC DT DA DC DC DT DC DT DA DG SEQRES 4 C 40 DA SEQRES 1 P 14 DA DG DC DT DT DG DG DT DG DT DA DT DA SEQRES 2 P 14 DC SEQRES 1 A 1082 MET LYS TYR LYS ILE GLY LEU ASP ILE GLY ILE THR SER SEQRES 2 A 1082 ILE GLY TRP ALA VAL ILE ASN LEU ASP ILE PRO ARG ILE SEQRES 3 A 1082 GLU ASP LEU GLY VAL ARG ILE PHE ASP ARG ALA GLU ASN SEQRES 4 A 1082 PRO LYS THR GLY GLU SER LEU ALA LEU PRO ARG ARG LEU SEQRES 5 A 1082 ALA ARG SER ALA ARG ARG ARG LEU ARG ARG ARG LYS HIS SEQRES 6 A 1082 ARG LEU GLU ARG ILE ARG ARG LEU PHE VAL ARG GLU GLY SEQRES 7 A 1082 ILE LEU THR LYS GLU GLU LEU ASN LYS LEU PHE GLU LYS SEQRES 8 A 1082 LYS HIS GLU ILE ASP VAL TRP GLN LEU ARG VAL GLU ALA SEQRES 9 A 1082 LEU ASP ARG LYS LEU ASN ASN ASP GLU LEU ALA ARG ILE SEQRES 10 A 1082 LEU LEU HIS LEU ALA LYS ARG ARG GLY PHE ARG SER ASN SEQRES 11 A 1082 ARG LYS SER GLU ARG THR ASN LYS GLU ASN SER THR MET SEQRES 12 A 1082 LEU LYS HIS ILE GLU GLU ASN GLN SER ILE LEU SER SER SEQRES 13 A 1082 TYR ARG THR VAL ALA GLU MET VAL VAL LYS ASP PRO LYS SEQRES 14 A 1082 PHE SER LEU HIS LYS ARG ASN LYS GLU ASP ASN TYR THR SEQRES 15 A 1082 ASN THR VAL ALA ARG ASP ASP LEU GLU ARG GLU ILE LYS SEQRES 16 A 1082 LEU ILE PHE ALA LYS GLN ARG GLU TYR GLY ASN ILE VAL SEQRES 17 A 1082 CYS THR GLU ALA PHE GLU HIS GLU TYR ILE SER ILE TRP SEQRES 18 A 1082 ALA SER GLN ARG PRO PHE ALA SER LYS ASP ASP ILE GLU SEQRES 19 A 1082 LYS LYS VAL GLY PHE CYS THR PHE GLU PRO LYS GLU LYS SEQRES 20 A 1082 ARG ALA PRO LYS ALA THR TYR THR PHE GLN SER PHE THR SEQRES 21 A 1082 VAL TRP GLU HIS ILE ASN LYS LEU ARG LEU VAL SER PRO SEQRES 22 A 1082 GLY GLY ILE ARG ALA LEU THR ASP ASP GLU ARG ARG LEU SEQRES 23 A 1082 ILE TYR LYS GLN ALA PHE HIS LYS ASN LYS ILE THR PHE SEQRES 24 A 1082 HIS ASP VAL ARG THR LEU LEU ASN LEU PRO ASP ASP THR SEQRES 25 A 1082 ARG PHE LYS GLY LEU LEU TYR ASP ARG ASN THR THR LEU SEQRES 26 A 1082 LYS GLU ASN GLU LYS VAL ARG PHE LEU GLU LEU GLY ALA SEQRES 27 A 1082 TYR HIS LYS ILE ARG LYS ALA ILE ASP SER VAL TYR GLY SEQRES 28 A 1082 LYS GLY ALA ALA LYS SER PHE ARG PRO ILE ASP PHE ASP SEQRES 29 A 1082 THR PHE GLY TYR ALA LEU THR MET PHE LYS ASP ASP THR SEQRES 30 A 1082 ASP ILE ARG SER TYR LEU ARG ASN GLU TYR GLU GLN ASN SEQRES 31 A 1082 GLY LYS ARG MET GLU ASN LEU ALA ASP LYS VAL TYR ASP SEQRES 32 A 1082 GLU GLU LEU ILE GLU GLU LEU LEU ASN LEU SER PHE SER SEQRES 33 A 1082 LYS PHE GLY HIS LEU SER LEU LYS ALA LEU ARG ASN ILE SEQRES 34 A 1082 LEU PRO TYR MET GLU GLN GLY GLU VAL TYR SER THR ALA SEQRES 35 A 1082 CYS GLU ARG ALA GLY TYR THR PHE THR GLY PRO LYS LYS SEQRES 36 A 1082 LYS GLN LYS THR VAL LEU LEU PRO ASN ILE PRO PRO ILE SEQRES 37 A 1082 ALA ASN PRO VAL VAL MET ARG ALA LEU THR GLN ALA ARG SEQRES 38 A 1082 LYS VAL VAL ASN ALA ILE ILE LYS LYS TYR GLY SER PRO SEQRES 39 A 1082 VAL SER ILE HIS ILE GLU LEU ALA ARG GLU LEU SER GLN SEQRES 40 A 1082 SER PHE ASP GLU ARG ARG LYS MET GLN LYS GLU GLN GLU SEQRES 41 A 1082 GLY ASN ARG LYS LYS ASN GLU THR ALA ILE ARG GLN LEU SEQRES 42 A 1082 VAL GLU TYR GLY LEU THR LEU ASN PRO THR GLY LEU ASP SEQRES 43 A 1082 ILE VAL LYS PHE LYS LEU TRP SER GLU GLN ASN GLY LYS SEQRES 44 A 1082 CYS ALA TYR SER LEU GLN PRO ILE GLU ILE GLU ARG LEU SEQRES 45 A 1082 LEU GLU PRO GLY TYR THR GLU VAL ASP HIS VAL ILE PRO SEQRES 46 A 1082 TYR SER ARG SER LEU ASP ASP SER TYR THR ASN LYS VAL SEQRES 47 A 1082 LEU VAL LEU THR LYS GLU ASN ARG GLU LYS GLY ASN ARG SEQRES 48 A 1082 THR PRO ALA GLU TYR LEU GLY LEU GLY SER GLU ARG TRP SEQRES 49 A 1082 GLN GLN PHE GLU THR PHE VAL LEU THR ASN LYS GLN PHE SEQRES 50 A 1082 SER LYS LYS LYS ARG ASP ARG LEU LEU ARG LEU HIS TYR SEQRES 51 A 1082 ASP GLU ASN GLU GLU ASN GLU PHE LYS ASN ARG ASN LEU SEQRES 52 A 1082 ASN ASP THR ARG TYR ILE SER ARG PHE LEU ALA ASN PHE SEQRES 53 A 1082 ILE ARG GLU HIS LEU LYS PHE ALA ASP SER ASP ASP LYS SEQRES 54 A 1082 GLN LYS VAL TYR THR VAL ASN GLY ARG ILE THR ALA HIS SEQRES 55 A 1082 LEU ARG SER ARG TRP ASN PHE ASN LYS ASN ARG GLU GLU SEQRES 56 A 1082 SER ASN LEU HIS HIS ALA VAL ASP ALA ALA ILE VAL ALA SEQRES 57 A 1082 CYS THR THR PRO SER ASP ILE ALA ARG VAL THR ALA PHE SEQRES 58 A 1082 TYR GLN ARG ARG GLU GLN ASN LYS GLU LEU SER LYS LYS SEQRES 59 A 1082 THR ASP PRO GLN PHE PRO GLN PRO TRP PRO HIS PHE ALA SEQRES 60 A 1082 ASP GLU LEU GLN ALA ARG LEU SER LYS ASN PRO LYS GLU SEQRES 61 A 1082 SER ILE LYS ALA LEU ASN LEU GLY ASN TYR ASP ASN GLU SEQRES 62 A 1082 LYS LEU GLU SER LEU GLN PRO VAL PHE VAL SER ARG MET SEQRES 63 A 1082 PRO LYS ARG SER ILE THR GLY ALA ALA HIS GLN GLU THR SEQRES 64 A 1082 LEU ARG ARG TYR ILE GLY ILE ASP GLU ARG SER GLY LYS SEQRES 65 A 1082 ILE GLN THR VAL VAL LYS LYS LYS LEU SER GLU ILE GLN SEQRES 66 A 1082 LEU ASP LYS THR GLY HIS PHE PRO MET TYR GLY LYS GLU SEQRES 67 A 1082 SER ASP PRO ARG THR TYR GLU ALA ILE ARG GLN ARG LEU SEQRES 68 A 1082 LEU GLU HIS ASN ASN ASP PRO LYS LYS ALA PHE GLN GLU SEQRES 69 A 1082 PRO LEU TYR LYS PRO LYS LYS ASN GLY GLU LEU GLY PRO SEQRES 70 A 1082 ILE ILE ARG THR ILE LYS ILE ILE ASP THR THR ASN GLN SEQRES 71 A 1082 VAL ILE PRO LEU ASN ASP GLY LYS THR VAL ALA TYR ASN SEQRES 72 A 1082 SER ASN ILE VAL ARG VAL ASP VAL PHE GLU LYS ASP GLY SEQRES 73 A 1082 LYS TYR TYR CYS VAL PRO ILE TYR THR ILE ASP MET MET SEQRES 74 A 1082 LYS GLY ILE LEU PRO ASN LYS ALA ILE GLU PRO ASN LYS SEQRES 75 A 1082 PRO TYR SER GLU TRP LYS GLU MET THR GLU ASP TYR THR SEQRES 76 A 1082 PHE ARG PHE SER LEU TYR PRO ASN ASP LEU ILE ARG ILE SEQRES 77 A 1082 GLU PHE PRO ARG GLU LYS THR ILE LYS THR ALA VAL GLY SEQRES 78 A 1082 GLU GLU ILE LYS ILE LYS ASP LEU PHE ALA TYR TYR GLN SEQRES 79 A 1082 THR ILE ASP SER SER ASN GLY GLY LEU SER LEU VAL SER SEQRES 80 A 1082 HIS ASP ASN ASN PHE SER LEU ARG SER ILE GLY SER ARG SEQRES 81 A 1082 THR LEU LYS ARG PHE GLU LYS TYR GLN VAL ASP VAL LEU SEQRES 82 A 1082 GLY ASN ILE TYR LYS VAL ARG GLY GLU LYS ARG VAL GLY SEQRES 83 A 1082 VAL ALA SER SER SER HIS SER LYS ALA GLY GLU THR ILE SEQRES 84 A 1082 ARG PRO LEU HET GTP B 201 32 HET MG B 202 1 HET MG B 203 1 HET MG A1101 1 HET MG A1102 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 MG 4(MG 2+) FORMUL 10 HOH *19(H2 O) HELIX 1 AA1 LEU A 46 GLU A 77 1 32 HELIX 2 AA2 THR A 81 LYS A 87 1 7 HELIX 3 AA3 ASP A 96 ALA A 104 1 9 HELIX 4 AA4 ASN A 110 ARG A 124 1 15 HELIX 5 AA5 ALA A 186 GLY A 205 1 20 HELIX 6 AA6 THR A 210 ALA A 222 1 13 HELIX 7 AA7 ILE A 233 VAL A 237 5 5 HELIX 8 AA8 THR A 253 LYS A 267 1 15 HELIX 9 AA9 THR A 280 PHE A 292 1 13 HELIX 10 AB1 PHE A 299 LEU A 306 1 8 HELIX 11 AB2 TYR A 319 THR A 323 5 5 HELIX 12 AB3 LEU A 336 GLY A 351 1 16 HELIX 13 AB4 ALA A 354 PHE A 358 5 5 HELIX 14 AB5 ARG A 359 PHE A 373 1 15 HELIX 15 AB6 ASP A 375 ARG A 384 1 10 HELIX 16 AB7 ASP A 403 LEU A 411 1 9 HELIX 17 AB8 LEU A 423 GLY A 436 1 14 HELIX 18 AB9 VAL A 438 ALA A 446 1 9 HELIX 19 AC1 ASN A 470 GLY A 492 1 23 HELIX 20 AC2 SER A 508 TYR A 536 1 29 HELIX 21 AC3 THR A 543 GLN A 556 1 14 HELIX 22 AC4 PRO A 585 LEU A 590 1 6 HELIX 23 AC5 THR A 602 GLY A 609 1 8 HELIX 24 AC6 THR A 612 LEU A 617 1 6 HELIX 25 AC7 SER A 621 ASN A 634 1 14 HELIX 26 AC8 SER A 638 LEU A 646 1 9 HELIX 27 AC9 LYS A 659 LEU A 681 1 23 HELIX 28 AD1 GLY A 697 ARG A 706 1 10 HELIX 29 AD2 LEU A 718 CYS A 729 1 12 HELIX 30 AD3 THR A 731 ARG A 745 1 15 HELIX 31 AD4 HIS A 765 LEU A 774 1 10 HELIX 32 AD5 ASN A 777 LEU A 785 1 9 HELIX 33 AD6 ASP A 791 SER A 797 1 7 HELIX 34 AD7 SER A 842 ILE A 844 5 3 HELIX 35 AD8 ASP A 860 GLU A 873 1 14 HELIX 36 AD9 THR A 945 LYS A 950 1 6 HELIX 37 AE1 PRO A 963 TRP A 967 5 5 SHEET 1 AA1 6 VAL A 692 ASN A 696 0 SHEET 2 AA1 6 SER A 496 LEU A 501 1 N ILE A 497 O TYR A 693 SHEET 3 AA1 6 TYR A 3 ILE A 9 1 N ILE A 5 O HIS A 498 SHEET 4 AA1 6 SER A 13 ASN A 20 -1 O GLY A 15 N ASP A 8 SHEET 5 AA1 6 ARG A 25 ILE A 33 -1 O GLY A 30 N TRP A 16 SHEET 6 AA1 6 SER A 804 ARG A 805 1 O SER A 804 N ILE A 33 SHEET 1 AA2 2 ARG A 248 PRO A 250 0 SHEET 2 AA2 2 PHE A 418 SER A 422 -1 O LEU A 421 N ALA A 249 SHEET 1 AA3 3 GLY A 275 ARG A 277 0 SHEET 2 AA3 3 LEU A 270 SER A 272 -1 N LEU A 270 O ARG A 277 SHEET 3 AA3 3 ARG A 313 PHE A 314 -1 O ARG A 313 N VAL A 271 SHEET 1 AA4 2 LYS A 296 THR A 298 0 SHEET 2 AA4 2 ARG A 332 GLU A 335 -1 O LEU A 334 N ILE A 297 SHEET 1 AA5 2 GLU A 388 GLN A 389 0 SHEET 2 AA5 2 LYS A 392 ARG A 393 -1 O LYS A 392 N GLN A 389 SHEET 1 AA6 2 THR A 578 ASP A 581 0 SHEET 2 AA6 2 VAL A 598 LEU A 601 -1 O VAL A 600 N GLU A 579 SHEET 1 AA7 5 THR A 901 THR A 908 0 SHEET 2 AA7 5 ILE A 833 LYS A 840 -1 N VAL A 837 O ILE A 904 SHEET 3 AA7 5 LEU A 820 ILE A 826 -1 N GLY A 825 O GLN A 834 SHEET 4 AA7 5 THR A 919 TYR A 922 -1 O VAL A 920 N ARG A 821 SHEET 5 AA7 5 VAL A 911 LEU A 914 -1 N LEU A 914 O THR A 919 SHEET 1 AA8 2 TYR A 887 PRO A 889 0 SHEET 2 AA8 2 LEU A 895 ILE A 898 -1 O PRO A 897 N LYS A 888 SHEET 1 AA9 3 TYR A 938 TYR A 944 0 SHEET 2 AA9 3 ILE A 926 GLU A 933 -1 N ASP A 930 O VAL A 941 SHEET 3 AA9 3 THR A 975 LEU A 980 -1 O LEU A 980 N VAL A 929 SHEET 1 AB1 6 SER A1033 ILE A1037 0 SHEET 2 AB1 6 LEU A1023 VAL A1026 -1 N LEU A1025 O LEU A1034 SHEET 3 AB1 6 GLU A1003 ILE A1016 -1 N THR A1015 O SER A1024 SHEET 4 AB1 6 ASP A 984 LYS A 997 -1 N ILE A 986 O ALA A1011 SHEET 5 AB1 6 ARG A1044 VAL A1050 -1 O TYR A1048 N LEU A 985 SHEET 6 AB1 6 ILE A1056 LYS A1058 -1 O TYR A1057 N GLN A1049 LINK P G B 2 O3' GTP B 201 1555 1555 1.60 LINK OP1 C B 93 MG MG A1102 1555 1555 2.09 LINK OP2 A B 101 MG MG B 202 1555 1555 2.09 LINK OP1 U B 102 MG MG B 203 1555 1555 2.10 LINK MG MG B 202 O HOH B 303 1555 1555 2.10 LINK MG MG B 202 O HOH B 307 1555 1555 2.07 LINK MG MG B 203 O HOH B 308 1555 1555 2.74 LINK MG MG B 203 OG1 THR A 812 1555 1555 2.71 LINK O HOH B 304 MG MG A1102 1555 1555 2.77 LINK OP2 DC C 15 MG MG A1101 1555 1555 2.80 LINK O3' DC P 14 MG MG A1101 1555 1555 2.79 LINK OG1 THR A 478 MG MG A1102 1555 1555 2.45 LINK OD2 ASP A 581 MG MG A1101 1555 1555 2.09 LINK MG MG A1101 O HOH A1208 1555 1555 2.12 CISPEP 1 LYS A 934 ASP A 935 0 -7.74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 2559 U B 146 TER 3064 DG C 39 TER 3105 DC P 14 TER 11510 SER A1070 HETATM11511 PG GTP B 201 85.116 126.808 116.671 0.00 27.76 P HETATM11512 O1G GTP B 201 86.074 127.974 116.611 0.00 27.73 O HETATM11513 O2G GTP B 201 84.911 126.251 115.282 0.00 27.74 O HETATM11514 O3G GTP B 201 83.788 127.268 117.224 0.00 27.78 O HETATM11515 O3B GTP B 201 85.751 125.668 117.618 0.00 27.69 O HETATM11516 PB GTP B 201 86.142 125.966 119.154 0.00 27.56 P HETATM11517 O1B GTP B 201 87.133 127.103 119.218 0.00 27.41 O HETATM11518 O2B GTP B 201 86.701 124.733 119.822 0.00 27.51 O HETATM11519 O3A GTP B 201 84.757 126.426 119.834 1.00 27.67 O HETATM11520 PA GTP B 201 83.548 125.388 120.068 1.00 39.26 P HETATM11521 O1A GTP B 201 82.294 125.918 119.415 1.00 32.30 O HETATM11522 O2A GTP B 201 83.883 124.012 119.543 0.00 27.80 O HETATM11523 O5' GTP B 201 83.348 125.361 121.664 1.00 29.74 O HETATM11524 C5' GTP B 201 82.926 126.529 122.331 1.00 29.03 C HETATM11525 C4' GTP B 201 83.359 126.495 123.791 1.00 29.05 C HETATM11526 O4' GTP B 201 82.640 125.475 124.453 1.00 29.81 O HETATM11527 C3' GTP B 201 84.824 126.158 123.996 1.00 27.13 C HETATM11528 O3' GTP B 201 85.643 127.303 124.050 1.00 26.19 O HETATM11529 C2' GTP B 201 84.818 125.456 125.335 1.00 25.59 C HETATM11530 O2' GTP B 201 85.038 126.387 126.367 1.00 27.24 O HETATM11531 C1' GTP B 201 83.426 124.869 125.461 1.00 25.43 C HETATM11532 N9 GTP B 201 83.491 123.417 125.216 1.00 28.84 N HETATM11533 C8 GTP B 201 82.988 122.765 124.121 1.00 31.06 C HETATM11534 N7 GTP B 201 83.228 121.442 124.257 1.00 27.47 N HETATM11535 C5 GTP B 201 83.868 121.238 125.427 1.00 26.74 C HETATM11536 C6 GTP B 201 84.335 120.087 126.045 1.00 25.25 C HETATM11537 O6 GTP B 201 84.188 118.992 125.506 1.00 25.53 O HETATM11538 N1 GTP B 201 84.965 120.178 127.267 1.00 22.33 N HETATM11539 C2 GTP B 201 85.125 121.410 127.867 1.00 24.48 C HETATM11540 N2 GTP B 201 85.733 121.499 129.046 1.00 24.17 N HETATM11541 N3 GTP B 201 84.658 122.550 127.247 1.00 25.43 N HETATM11542 C4 GTP B 201 84.038 122.469 126.044 1.00 27.21 C HETATM11543 MG MG B 202 126.787 111.624 133.262 1.00 8.59 MG HETATM11544 MG MG B 203 133.871 114.585 129.683 1.00 13.76 MG HETATM11545 MG MG A1101 129.844 141.115 112.947 1.00 38.25 MG HETATM11546 MG MG A1102 121.359 114.616 132.782 1.00 1.70 MG HETATM11547 O HOH B 301 122.809 114.245 137.116 1.00 12.53 O HETATM11548 O HOH B 302 128.701 116.338 133.626 1.00 5.91 O HETATM11549 O HOH B 303 128.537 110.578 132.778 1.00 12.54 O HETATM11550 O HOH B 304 123.012 112.569 133.660 1.00 9.46 O HETATM11551 O HOH B 305 129.992 120.503 119.819 1.00 8.25 O HETATM11552 O HOH B 306 142.680 136.209 120.008 1.00 19.96 O HETATM11553 O HOH B 307 126.923 113.337 132.105 1.00 6.59 O HETATM11554 O HOH B 308 132.780 113.218 127.571 1.00 15.62 O HETATM11555 O HOH B 309 102.500 122.321 113.962 1.00 19.99 O HETATM11556 O HOH C 101 113.266 118.275 107.769 1.00 14.73 O HETATM11557 O HOH C 102 127.934 133.658 108.999 1.00 23.69 O HETATM11558 O HOH A1201 108.528 127.032 134.864 1.00 25.97 O HETATM11559 O HOH A1202 111.288 124.844 137.759 1.00 18.41 O HETATM11560 O HOH A1203 109.059 128.439 139.082 1.00 26.25 O HETATM11561 O HOH A1204 132.606 142.617 112.033 1.00 59.63 O HETATM11562 O HOH A1205 119.919 126.895 143.500 1.00 26.95 O HETATM11563 O HOH A1206 138.784 123.356 96.760 1.00 3.37 O HETATM11564 O HOH A1207 125.825 114.841 136.899 1.00 29.98 O HETATM11565 O HOH A1208 129.417 140.457 114.919 1.00 64.35 O CONECT 111528 CONECT 190511546 CONECT 208111543 CONECT 210211544 CONECT 256211545 CONECT 309411545 CONECT 664211546 CONECT 748011545 CONECT 941111544 CONECT1151111512115131151411515 CONECT1151211511 CONECT1151311511 CONECT1151411511 CONECT115151151111516 CONECT1151611515115171151811519 CONECT1151711516 CONECT1151811516 CONECT115191151611520 CONECT1152011519115211152211523 CONECT1152111520 CONECT1152211520 CONECT115231152011524 CONECT115241152311525 CONECT11525115241152611527 CONECT115261152511531 CONECT11527115251152811529 CONECT11528 111527 CONECT11529115271153011531 CONECT1153011529 CONECT11531115261152911532 CONECT11532115311153311542 CONECT115331153211534 CONECT115341153311535 CONECT11535115341153611542 CONECT11536115351153711538 CONECT1153711536 CONECT115381153611539 CONECT11539115381154011541 CONECT1154011539 CONECT115411153911542 CONECT11542115321153511541 CONECT11543 20811154911553 CONECT11544 2102 941111554 CONECT11545 2562 3094 748011565 CONECT11546 1905 664211550 CONECT1154911543 CONECT1155011546 CONECT1155311543 CONECT1155411544 CONECT1156511545 MASTER 321 0 5 37 33 0 0 611561 4 50 102 END