HEADER PROTEIN BINDING 08-MAR-24 9AYN TITLE MYCOLICIBACTERIUM SMEGMATIS CLPS WITH BOUND NI2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 GENE: CLPS, MSMEG_4910; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET22B KEYWDS PROTEOLYSIS, ADAPTOR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.J.PRESLOID,J.JIANG,P.C.BEARDSLEE,H.R.ANDERSON,T.M.SWAYNE, AUTHOR 2 K.R.SCHMITZ REVDAT 1 11-DEC-24 9AYN 0 JRNL AUTH C.J.PRESLOID,J.JIANG,P.KANDEL,H.R.ANDERSON,P.C.BEARDSLEE, JRNL AUTH 2 T.M.SWAYNE,K.R.SCHMITZ JRNL TITL CLPS DIRECTS DEGRADATION OF N-DEGRON SUBSTRATES WITH PRIMARY JRNL TITL 2 DESTABILIZING RESIDUES IN MYCOLICIBACTERIUM SMEGMATIS. JRNL REF MOL.MICROBIOL. 2024 JRNL REFN ESSN 1365-2958 JRNL PMID 39626090 JRNL DOI 10.1111/MMI.15334 REMARK 2 REMARK 2 RESOLUTION. 0.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 87769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.139 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 4365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3200 - 3.0100 1.00 2987 166 0.1107 0.1347 REMARK 3 2 3.0100 - 2.3900 1.00 2901 123 0.1158 0.1690 REMARK 3 3 2.3900 - 2.0900 1.00 2827 151 0.1146 0.1313 REMARK 3 4 2.0900 - 1.9000 1.00 2873 116 0.1169 0.1415 REMARK 3 5 1.9000 - 1.7600 1.00 2806 144 0.1256 0.1322 REMARK 3 6 1.7600 - 1.6600 1.00 2785 162 0.1138 0.1136 REMARK 3 7 1.6600 - 1.5800 1.00 2813 124 0.1110 0.1153 REMARK 3 8 1.5800 - 1.5100 1.00 2823 129 0.1079 0.1215 REMARK 3 9 1.5100 - 1.4500 1.00 2762 154 0.1097 0.1292 REMARK 3 10 1.4500 - 1.4000 1.00 2801 147 0.1194 0.1324 REMARK 3 11 1.4000 - 1.3500 1.00 2737 157 0.1127 0.1228 REMARK 3 12 1.3500 - 1.3200 1.00 2795 146 0.1114 0.1453 REMARK 3 13 1.3200 - 1.2800 1.00 2762 148 0.1081 0.1181 REMARK 3 14 1.2800 - 1.2500 1.00 2772 143 0.1127 0.1299 REMARK 3 15 1.2500 - 1.2200 1.00 2752 155 0.1139 0.1298 REMARK 3 16 1.2200 - 1.2000 1.00 2751 160 0.1175 0.1505 REMARK 3 17 1.2000 - 1.1700 1.00 2778 143 0.1216 0.1390 REMARK 3 18 1.1700 - 1.1500 1.00 2763 154 0.1185 0.1538 REMARK 3 19 1.1500 - 1.1300 1.00 2720 148 0.1115 0.1283 REMARK 3 20 1.1300 - 1.1100 1.00 2743 154 0.1081 0.1330 REMARK 3 21 1.1100 - 1.0900 1.00 2759 138 0.1149 0.1430 REMARK 3 22 1.0900 - 1.0800 1.00 2775 149 0.1175 0.1318 REMARK 3 23 1.0800 - 1.0600 1.00 2772 136 0.1280 0.1410 REMARK 3 24 1.0600 - 1.0400 1.00 2723 143 0.1402 0.1462 REMARK 3 25 1.0400 - 1.0300 1.00 2743 143 0.1487 0.1641 REMARK 3 26 1.0300 - 1.0200 1.00 2778 143 0.1676 0.1795 REMARK 3 27 1.0200 - 1.0000 1.00 2732 147 0.1886 0.1851 REMARK 3 28 1.0000 - 0.9900 1.00 2726 155 0.2187 0.2196 REMARK 3 29 0.9900 - 0.9800 1.00 2797 135 0.2470 0.2422 REMARK 3 30 0.9800 - 0.9700 0.98 2648 152 0.2850 0.3089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.095 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.875 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1349 REMARK 3 ANGLE : 0.976 1854 REMARK 3 CHIRALITY : 0.072 206 REMARK 3 PLANARITY : 0.009 235 REMARK 3 DIHEDRAL : 14.435 504 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9AYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87769 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.970 REMARK 200 RESOLUTION RANGE LOW (A) : 27.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 60.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 12% PEG3350, 5 MM REMARK 280 NICL2 CRYOPROTECTED IN 0.1 M HEPES PH 7.5, 40% PEG3350, 5 MM REMARK 280 NICL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.74650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.32050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.13100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.32050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.74650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.13100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 21 REMARK 465 SER B 22 REMARK 465 THR B 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 358 O HOH B 429 2.06 REMARK 500 O HOH B 301 O HOH B 324 2.06 REMARK 500 O HOH B 310 O HOH B 441 2.07 REMARK 500 O HOH B 342 O HOH B 395 2.08 REMARK 500 O HOH B 336 O HOH B 342 2.08 REMARK 500 O HOH A 335 O HOH A 375 2.09 REMARK 500 O HOH A 434 O HOH B 401 2.10 REMARK 500 O HOH B 323 O HOH B 416 2.11 REMARK 500 O HOH B 309 O HOH B 310 2.11 REMARK 500 O HOH A 377 O HOH A 407 2.12 REMARK 500 O HOH A 356 O HOH B 421 2.12 REMARK 500 O HOH A 439 O HOH A 467 2.12 REMARK 500 O HOH A 359 O HOH A 392 2.12 REMARK 500 O HOH B 312 O HOH B 462 2.13 REMARK 500 O HOH A 323 O HOH A 456 2.13 REMARK 500 O HOH B 315 O HOH B 423 2.14 REMARK 500 O HOH B 305 O HOH B 471 2.15 REMARK 500 O HOH B 312 O HOH B 396 2.15 REMARK 500 O HOH B 433 O HOH B 477 2.15 REMARK 500 O HOH B 400 O HOH B 450 2.15 REMARK 500 O HOH A 429 O HOH A 451 2.17 REMARK 500 O HOH B 379 O HOH B 441 2.17 REMARK 500 O HOH A 377 O HOH A 418 2.17 REMARK 500 O HOH B 386 O HOH B 471 2.18 REMARK 500 O HOH B 304 O HOH B 425 2.18 REMARK 500 O HOH A 396 O HOH A 432 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 78 O HOH B 389 3555 2.09 REMARK 500 O HOH B 457 O HOH B 472 3545 2.09 REMARK 500 O HOH A 466 O HOH B 357 3555 2.13 REMARK 500 O HOH A 398 O HOH A 476 4546 2.13 REMARK 500 O HOH A 449 O HOH B 423 4546 2.14 REMARK 500 O HOH A 476 O HOH B 437 4446 2.15 REMARK 500 O HOH A 427 O HOH B 480 3555 2.15 REMARK 500 O HOH A 392 O HOH B 302 2455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 474 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 475 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 476 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 477 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH B 501 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 502 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B 503 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 504 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH B 505 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH B 506 DISTANCE = 7.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 21 N REMARK 620 2 GLU A 21 O 77.5 REMARK 620 3 HIS A 65 NE2 84.9 74.4 REMARK 620 4 HOH A 350 O 86.7 79.4 5.0 REMARK 620 5 HOH A 366 O 89.1 76.4 4.4 4.3 REMARK 620 6 HOH A 439 O 89.6 79.5 6.2 2.9 3.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 21 O REMARK 620 2 HIS A 65 ND1 117.9 REMARK 620 3 HOH A 316 O 122.1 4.2 REMARK 620 4 HOH A 350 O 124.6 6.9 3.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 32 O REMARK 620 2 ASP A 34 OD2 106.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 ND1 REMARK 620 2 GLU B 78 OE1 15.8 REMARK 620 3 GLU B 81 OE1 18.7 4.1 REMARK 620 4 HOH B 313 O 19.3 3.7 4.4 REMARK 620 5 HOH B 314 O 15.6 1.5 5.4 3.8 REMARK 620 6 HOH B 371 O 18.4 3.0 1.5 3.0 4.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD1 REMARK 620 2 HOH A 311 O 91.1 REMARK 620 3 HOH A 322 O 91.8 90.4 REMARK 620 4 ASP B 99 OD1 173.0 83.7 92.8 REMARK 620 5 HOH B 322 O 92.0 176.4 91.3 93.1 REMARK 620 6 HOH B 360 O 88.4 88.5 178.9 86.9 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 34 OD2 REMARK 620 2 GLY B 91 O 120.0 REMARK 620 3 HOH B 359 O 125.2 114.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 65 NE2 REMARK 620 2 HOH B 398 O 100.3 REMARK 620 3 HOH B 424 O 87.0 65.9 REMARK 620 4 HOH B 490 O 159.1 91.2 113.7 REMARK 620 N 1 2 3 DBREF 9AYN A 21 100 UNP A0R1X7 A0R1X7_MYCS2 21 100 DBREF 9AYN B 21 100 UNP A0R1X7 A0R1X7_MYCS2 21 100 SEQRES 1 A 80 GLU SER THR GLU ALA PRO TRP VAL THR ILE VAL TRP ASP SEQRES 2 A 80 ASP PRO VAL ASN LEU MET SER TYR VAL THR TYR VAL PHE SEQRES 3 A 80 GLN LYS LEU PHE GLY TYR SER GLU PRO HIS ALA THR LYS SEQRES 4 A 80 LEU MET LEU GLN VAL HIS ASN GLU GLY LYS ALA VAL VAL SEQRES 5 A 80 SER ALA GLY SER ARG GLU SER MET GLU VAL ASP VAL SER SEQRES 6 A 80 LYS LEU HIS ALA ALA GLY LEU TRP ALA THR MET GLN GLN SEQRES 7 A 80 ASP ARG SEQRES 1 B 80 GLU SER THR GLU ALA PRO TRP VAL THR ILE VAL TRP ASP SEQRES 2 B 80 ASP PRO VAL ASN LEU MET SER TYR VAL THR TYR VAL PHE SEQRES 3 B 80 GLN LYS LEU PHE GLY TYR SER GLU PRO HIS ALA THR LYS SEQRES 4 B 80 LEU MET LEU GLN VAL HIS ASN GLU GLY LYS ALA VAL VAL SEQRES 5 B 80 SER ALA GLY SER ARG GLU SER MET GLU VAL ASP VAL SER SEQRES 6 B 80 LYS LEU HIS ALA ALA GLY LEU TRP ALA THR MET GLN GLN SEQRES 7 B 80 ASP ARG HET NI A 201 1 HET NI A 202 2 HET MG A 203 1 HET NI B 201 1 HET NI B 202 1 HET MG B 203 1 HETNAM NI NICKEL (II) ION HETNAM MG MAGNESIUM ION FORMUL 3 NI 4(NI 2+) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *384(H2 O) HELIX 1 AA1 LEU A 38 GLY A 51 1 14 HELIX 2 AA2 SER A 53 GLY A 68 1 16 HELIX 3 AA3 SER A 76 ALA A 90 1 15 HELIX 4 AA4 LEU B 38 GLY B 51 1 14 HELIX 5 AA5 SER B 53 GLY B 68 1 16 HELIX 6 AA6 SER B 76 ALA B 90 1 15 SHEET 1 AA1 3 LYS A 69 GLY A 75 0 SHEET 2 AA1 3 TRP A 27 TRP A 32 -1 N TRP A 27 O GLY A 75 SHEET 3 AA1 3 TRP A 93 GLN A 98 -1 O THR A 95 N ILE A 30 SHEET 1 AA2 3 LYS B 69 GLY B 75 0 SHEET 2 AA2 3 TRP B 27 TRP B 32 -1 N TRP B 27 O GLY B 75 SHEET 3 AA2 3 TRP B 93 GLN B 98 -1 O THR B 95 N ILE B 30 LINK N GLU A 21 NI A NI A 202 1555 4546 2.31 LINK O GLU A 21 NI A NI A 202 1555 4546 2.00 LINK O GLU A 21 NI B NI A 202 1555 4546 2.44 LINK O TRP A 32 MG MG A 203 1555 1555 2.82 LINK OD2 ASP A 34 MG MG A 203 1555 1555 2.75 LINK ND1BHIS A 65 NI B NI A 202 1555 1555 2.14 LINK NE2AHIS A 65 NI A NI A 202 1555 1555 2.35 LINK ND1 HIS A 88 NI NI B 201 1555 4546 2.09 LINK OD1 ASP A 99 NI NI A 201 1555 1555 1.98 LINK NI NI A 201 O HOH A 311 1555 1555 1.99 LINK NI NI A 201 O HOH A 322 1555 1555 2.11 LINK NI NI A 201 OD1 ASP B 99 1555 1555 1.99 LINK NI NI A 201 O HOH B 322 1555 1555 1.98 LINK NI NI A 201 O HOH B 360 1555 1555 2.11 LINK NI B NI A 202 O HOH A 316 1555 1555 2.19 LINK NI A NI A 202 O HOH A 350 1555 1555 2.07 LINK NI B NI A 202 O HOH A 350 1555 1555 2.55 LINK NI A NI A 202 O HOH A 366 1555 1555 2.02 LINK NI A NI A 202 O HOH A 439 1555 1555 2.05 LINK OD2 ASP B 34 MG MG B 203 1555 1555 2.76 LINK NE2 HIS B 65 NI NI B 202 1555 1555 2.11 LINK OE1 GLU B 78 NI NI B 201 1555 1555 2.03 LINK OE1 GLU B 81 NI NI B 201 1555 1555 2.06 LINK O GLY B 91 MG MG B 203 1555 1555 2.76 LINK NI NI B 201 O HOH B 313 1555 1555 2.09 LINK NI NI B 201 O HOH B 314 1555 1555 2.08 LINK NI NI B 201 O HOH B 371 1555 1555 2.09 LINK NI NI B 202 O HOH B 398 1555 1555 2.19 LINK NI NI B 202 O HOH B 424 1555 1555 2.62 LINK NI NI B 202 O HOH B 490 1555 1555 2.71 LINK MG MG B 203 O HOH B 359 1555 1555 2.89 CRYST1 51.493 52.262 54.641 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018301 0.00000