HEADER OXIDOREDUCTASE 09-MAR-24 9AZ0 TITLE CRYSTAL CRYSTAL OF FC2591 PEROXIDASE FROM FRANKIA CASUARINAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYP-TYPE PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANKIA CASUARINAE; SOURCE 3 ORGANISM_TAXID: 106370; SOURCE 4 GENE: FRANCCI3_2591; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FERRIDOXIN-LIKE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,Z.CHOOLAEI,A.YAKUNIN,A.SAVCHENKO REVDAT 2 30-JUL-25 9AZ0 1 JRNL REVDAT 1 15-JAN-25 9AZ0 0 JRNL AUTH Z.CHOOLAEI,A.N.KHUSNUTDINOVA,T.SKARINA,P.STOGIOS,P.DIEP, JRNL AUTH 2 S.LEMAK,E.A.EDWARDS,A.SAVCHENKO,A.F.YAKUNIN JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO LIGNIN-OXIDIZING JRNL TITL 2 ACTIVITY OF BACTERIAL PEROXIDASES AGAINST SOLUBLE SUBSTRATES JRNL TITL 3 AND KRAFT LIGNIN. JRNL REF ACS CHEM.BIOL. V. 20 830 2025 JRNL REFN ESSN 1554-8937 JRNL PMID 40145573 JRNL DOI 10.1021/ACSCHEMBIO.4C00788 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 39461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1200 - 3.9600 1.00 2768 146 0.1284 0.1570 REMARK 3 2 3.9600 - 3.1500 1.00 2742 144 0.1192 0.1472 REMARK 3 3 3.1500 - 2.7500 1.00 2707 143 0.1383 0.1722 REMARK 3 4 2.7500 - 2.5000 1.00 2707 142 0.1433 0.1482 REMARK 3 5 2.5000 - 2.3200 1.00 2698 142 0.1408 0.1768 REMARK 3 6 2.3200 - 2.1800 1.00 2692 142 0.1460 0.2268 REMARK 3 7 2.1800 - 2.0700 1.00 2708 142 0.1498 0.2041 REMARK 3 8 2.0700 - 1.9800 1.00 2700 142 0.1658 0.2148 REMARK 3 9 1.9800 - 1.9100 0.99 2670 139 0.1569 0.1935 REMARK 3 10 1.9100 - 1.8400 0.99 2657 140 0.1607 0.2071 REMARK 3 11 1.8400 - 1.7800 0.99 2654 139 0.1619 0.2100 REMARK 3 12 1.7800 - 1.7300 0.98 2687 142 0.1850 0.2392 REMARK 3 13 1.7300 - 1.6900 0.98 2654 141 0.2287 0.2547 REMARK 3 14 1.6900 - 1.6500 0.91 2445 128 0.2788 0.2922 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.203 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.841 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2757 REMARK 3 ANGLE : 0.913 3765 REMARK 3 CHIRALITY : 0.056 401 REMARK 3 PLANARITY : 0.009 508 REMARK 3 DIHEDRAL : 14.388 985 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6041 -3.3922 14.4537 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.1036 REMARK 3 T33: 0.0730 T12: -0.0285 REMARK 3 T13: 0.0332 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 4.4671 L22: 2.6642 REMARK 3 L33: 1.8892 L12: -2.5297 REMARK 3 L13: 0.9543 L23: 0.0981 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0537 S13: 0.1367 REMARK 3 S21: -0.0536 S22: -0.0731 S23: 0.0439 REMARK 3 S31: -0.0968 S32: -0.0239 S33: 0.0486 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0729 -6.7614 15.5658 REMARK 3 T TENSOR REMARK 3 T11: 0.1065 T22: 0.1517 REMARK 3 T33: 0.1093 T12: 0.0022 REMARK 3 T13: -0.0010 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 4.0779 L22: 9.9032 REMARK 3 L33: 4.0785 L12: -4.6061 REMARK 3 L13: 2.1254 L23: -4.5157 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: -0.0040 S13: 0.1720 REMARK 3 S21: 0.0654 S22: -0.1208 S23: -0.3343 REMARK 3 S31: 0.0491 S32: 0.2961 S33: 0.0959 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7408 -1.0088 8.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1986 REMARK 3 T33: 0.2081 T12: -0.0245 REMARK 3 T13: 0.0084 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.1919 L22: 1.6033 REMARK 3 L33: 4.6380 L12: -0.3330 REMARK 3 L13: 0.6600 L23: -2.2948 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.0351 S13: -0.0104 REMARK 3 S21: -0.0233 S22: -0.0272 S23: -0.0527 REMARK 3 S31: -0.1249 S32: 0.2897 S33: 0.0255 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8718 -13.2580 19.4852 REMARK 3 T TENSOR REMARK 3 T11: 0.1498 T22: 0.1484 REMARK 3 T33: 0.1646 T12: -0.0031 REMARK 3 T13: -0.0068 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5310 L22: 1.5309 REMARK 3 L33: 0.8279 L12: -0.0930 REMARK 3 L13: -0.4038 L23: -0.4626 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: -0.0162 S13: -0.1175 REMARK 3 S21: -0.0550 S22: -0.0071 S23: 0.0550 REMARK 3 S31: 0.1951 S32: 0.0321 S33: 0.0144 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2131 -7.8275 5.1105 REMARK 3 T TENSOR REMARK 3 T11: 0.1899 T22: 0.1694 REMARK 3 T33: 0.1630 T12: 0.0193 REMARK 3 T13: 0.0159 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.8224 L22: 1.4534 REMARK 3 L33: 1.9721 L12: -0.5518 REMARK 3 L13: 1.2582 L23: -1.5276 REMARK 3 S TENSOR REMARK 3 S11: 0.0587 S12: 0.0507 S13: -0.0180 REMARK 3 S21: -0.1218 S22: -0.0759 S23: -0.1360 REMARK 3 S31: 0.1196 S32: 0.1780 S33: 0.0200 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3787 5.8522 8.3854 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.1625 REMARK 3 T33: 0.1757 T12: 0.0268 REMARK 3 T13: -0.0006 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.5937 L22: 1.7933 REMARK 3 L33: 1.6542 L12: 0.9633 REMARK 3 L13: -0.7023 L23: 0.6438 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: -0.0875 S13: 0.1179 REMARK 3 S21: -0.0555 S22: 0.0214 S23: -0.0710 REMARK 3 S31: -0.0966 S32: -0.1521 S33: -0.0899 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6737 -1.2390 24.5953 REMARK 3 T TENSOR REMARK 3 T11: 0.1373 T22: 0.1120 REMARK 3 T33: 0.1316 T12: -0.0144 REMARK 3 T13: 0.0167 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 4.8207 L22: 0.6371 REMARK 3 L33: 1.7487 L12: -0.0715 REMARK 3 L13: 1.8270 L23: -0.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.1235 S12: -0.1850 S13: 0.4279 REMARK 3 S21: 0.0787 S22: 0.0284 S23: -0.0307 REMARK 3 S31: -0.0994 S32: -0.0535 S33: 0.0975 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8291 -0.5300 14.9251 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1860 REMARK 3 T33: 0.1169 T12: 0.0043 REMARK 3 T13: -0.0063 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.9370 L22: 4.2027 REMARK 3 L33: 4.2901 L12: -0.3771 REMARK 3 L13: -0.2975 L23: 2.4761 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.3489 S13: 0.0234 REMARK 3 S21: -0.2499 S22: -0.0311 S23: 0.1485 REMARK 3 S31: -0.3233 S32: -0.1740 S33: 0.0820 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6232 -4.6028 20.5438 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.1356 REMARK 3 T33: 0.1652 T12: -0.0001 REMARK 3 T13: 0.0006 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.8392 L22: 0.1869 REMARK 3 L33: 2.0910 L12: -0.2119 REMARK 3 L13: -1.7033 L23: -0.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.0506 S13: -0.0393 REMARK 3 S21: 0.0097 S22: -0.0111 S23: 0.0930 REMARK 3 S31: 0.1069 S32: -0.0533 S33: 0.0592 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1745 -8.8566 21.7632 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1153 REMARK 3 T33: 0.1089 T12: -0.0002 REMARK 3 T13: 0.0019 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 4.4479 L22: 0.4405 REMARK 3 L33: 0.2929 L12: 0.4046 REMARK 3 L13: 0.6779 L23: 0.1315 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.0840 S13: -0.0956 REMARK 3 S21: 0.0200 S22: 0.0154 S23: 0.0328 REMARK 3 S31: 0.0380 S32: 0.0041 S33: -0.0064 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9AZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39461 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MG/ML PROTEIN PLUS 40 MM ZINC REMARK 280 ACETATE, 18% (W/V) POLYETHYLENE GLYCOL (PEG) 3350, REMARK 280 CRYOPROTECTANT PARATONE OIL, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.21700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.81950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.21700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.81950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1049 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1090 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1206 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 66 REMARK 465 GLU A 67 REMARK 465 ARG A 68 REMARK 465 PRO A 69 REMARK 465 GLN A 70 REMARK 465 GLU A 71 REMARK 465 ASP A 72 REMARK 465 GLN A 73 REMARK 465 SER A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 THR A 77 REMARK 465 ASP A 78 REMARK 465 ARG A 79 REMARK 465 VAL A 80 REMARK 465 ALA A 81 REMARK 465 ALA A 82 REMARK 465 VAL A 83 REMARK 465 ARG A 84 REMARK 465 ARG A 85 REMARK 465 GLU A 86 REMARK 465 ALA A 87 REMARK 465 LEU A 88 REMARK 465 ALA A 89 REMARK 465 GLY A 90 REMARK 465 VAL A 91 REMARK 465 VAL A 92 REMARK 465 GLY A 93 REMARK 465 ASP A 94 REMARK 465 ALA A 455 REMARK 465 GLY A 456 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 341 O HOH A 602 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 101 -61.10 -123.41 REMARK 500 HIS A 372 37.02 -142.03 REMARK 500 ASP A 389 -167.95 -77.25 REMARK 500 ALA A 410 -98.13 -100.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1296 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1297 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1298 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1299 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1300 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A1301 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A1302 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A1303 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH A1304 DISTANCE = 12.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 363 NE2 REMARK 620 2 HEM A 501 NA 90.9 REMARK 620 3 HEM A 501 NB 92.1 91.0 REMARK 620 4 HEM A 501 NC 96.7 172.4 87.7 REMARK 620 5 HEM A 501 ND 94.2 90.3 173.5 90.2 REMARK 620 6 OXY A 502 O2 164.7 84.9 73.3 87.6 100.5 REMARK 620 N 1 2 3 4 5 DBREF 9AZ0 A 66 456 UNP Q2J9T9 Q2J9T9_FRACC 66 456 SEQRES 1 A 391 ALA GLU ARG PRO GLN GLU ASP GLN SER GLY GLY THR ASP SEQRES 2 A 391 ARG VAL ALA ALA VAL ARG ARG GLU ALA LEU ALA GLY VAL SEQRES 3 A 391 VAL GLY ASP GLY ARG HIS GLN PRO GLY ILE ALA ASP ARG SEQRES 4 A 391 PRO PRO ALA GLN LEU VAL PHE THR ALA TYR ASP LEU THR SEQRES 5 A 391 THR SER GLY PRO ALA ALA VAL ARG THR SER LEU ALA ALA SEQRES 6 A 391 VAL LEU ARG THR TRP THR ALA ALA ALA ALA VAL LEU MET SEQRES 7 A 391 ARG GLY GLU PRO LEU ASP GLY ALA GLU ARG ASP THR GLN SEQRES 8 A 391 GLY LEU GLY PRO ALA GLY LEU THR ILE THR ILE GLY LEU SEQRES 9 A 391 GLY ALA SER ALA LEU ARG ARG ALA GLY LEU ASP ALA GLN SEQRES 10 A 391 ILE PRO ALA GLU PHE ALA ASP ILE PRO ALA MET PRO GLY SEQRES 11 A 391 ASP GLN LEU ASP LEU ALA ARG SER GLY GLY ASP LEU GLY SEQRES 12 A 391 VAL GLN VAL CYS ALA GLU ASP PRO MET VAL ALA VAL SER SEQRES 13 A 391 ALA SER ARG GLN MET ARG ARG LEU ALA ALA GLN ASP ALA SEQRES 14 A 391 ARG PRO ARG TRP ILE GLN ARG GLY PHE LEU ARG SER ALA SEQRES 15 A 391 ALA ALA ALA PHE ASN PRO GLY SER THR PRO ARG ASN LEU SEQRES 16 A 391 MET GLY GLN ILE ASP GLY THR ASP ASN PRO GLY PRO GLY SEQRES 17 A 391 THR PRO ARG PHE ASP ARG ALA VAL TRP VAL SER SER GLY SEQRES 18 A 391 PRO GLU TRP MET ARG ASP GLY SER TYR LEU VAL CYS ARG SEQRES 19 A 391 ARG ILE ARG MET LEU LEU ASP ALA TRP ALA ARG LEU ASP SEQRES 20 A 391 GLU THR ALA GLN SER ALA VAL ILE GLY ARG ARG LYS SER SEQRES 21 A 391 ASP GLY THR ALA LEU SER ALA PRO PRO VAL GLY GLN GLY SEQRES 22 A 391 GLY ALA GLU THR ILE GLN PRO ASP PHE THR ALA ARG ALA SEQRES 23 A 391 ALA ASP GLY SER LEU ALA ILE ALA GLY ASN ALA HIS VAL SEQRES 24 A 391 ARG LEU SER HIS PRO SER PHE HIS GLY GLY ILE ALA MET SEQRES 25 A 391 LEU ARG ARG GLY TYR SER TYR ASP ASP GLY LEU ASP SER SEQRES 26 A 391 ALA GLY GLU PRO ASP ALA GLY LEU PHE PHE ALA ALA TYR SEQRES 27 A 391 GLN ALA ASP PRO ARG THR ALA PHE VAL ALA VAL GLN ARG SEQRES 28 A 391 THR LEU ALA ALA GLY ASP ALA LEU ASN THR PHE ILE ARG SEQRES 29 A 391 HIS THR SER SER ALA LEU PHE ALA VAL PRO PRO ALA ALA SEQRES 30 A 391 PRO ALA GLY GLY PHE LEU ALA GLN GLY LEU PHE GLY ALA SEQRES 31 A 391 GLY HET HEM A 501 43 HET OXY A 502 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OXY OXYGEN MOLECULE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 OXY O2 FORMUL 4 HOH *704(H2 O) HELIX 1 AA1 GLY A 120 ARG A 144 1 25 HELIX 2 AA2 GLU A 152 GLN A 156 5 5 HELIX 3 AA3 GLY A 170 ALA A 177 1 8 HELIX 4 AA4 LEU A 179 ILE A 183 5 5 HELIX 5 AA5 PRO A 184 ALA A 188 5 5 HELIX 6 AA6 ASP A 199 SER A 203 5 5 HELIX 7 AA7 ASP A 215 ALA A 231 1 17 HELIX 8 AA8 THR A 274 TRP A 282 1 9 HELIX 9 AA9 PRO A 287 ARG A 291 5 5 HELIX 10 AB1 LEU A 304 ARG A 310 1 7 HELIX 11 AB2 ASP A 312 GLY A 321 1 10 HELIX 12 AB3 ALA A 362 HIS A 368 1 7 HELIX 13 AB4 PRO A 369 HIS A 372 5 4 HELIX 14 AB5 ALA A 410 ASP A 422 1 13 HELIX 15 AB6 ALA A 423 THR A 426 5 4 HELIX 16 AB7 ALA A 449 GLY A 454 5 6 SHEET 1 AA1 4 THR A 164 LEU A 169 0 SHEET 2 AA1 4 LEU A 207 ALA A 213 -1 O GLN A 210 N THR A 166 SHEET 3 AA1 4 GLN A 108 LEU A 116 -1 N TYR A 114 O LEU A 207 SHEET 4 AA1 4 ALA A 234 PHE A 243 -1 O ARG A 237 N ALA A 113 SHEET 1 AA2 4 LEU A 378 ARG A 379 0 SHEET 2 AA2 4 PRO A 394 GLN A 404 -1 O TYR A 403 N LEU A 378 SHEET 3 AA2 4 SER A 294 MET A 303 -1 N ILE A 301 O LEU A 398 SHEET 4 AA2 4 ILE A 428 HIS A 430 -1 O ARG A 429 N ARG A 302 SHEET 1 AA3 4 TYR A 382 LEU A 388 0 SHEET 2 AA3 4 PRO A 394 GLN A 404 -1 O PHE A 399 N TYR A 382 SHEET 3 AA3 4 SER A 294 MET A 303 -1 N ILE A 301 O LEU A 398 SHEET 4 AA3 4 ALA A 434 VAL A 438 -1 O ALA A 434 N CYS A 298 LINK NE2 HIS A 363 FE HEM A 501 1555 1555 2.09 LINK FE HEM A 501 O2 OXY A 502 1555 1555 2.75 CRYST1 64.434 71.639 76.638 90.00 109.23 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015520 0.000000 0.005414 0.00000 SCALE2 0.000000 0.013959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013819 0.00000 CONECT 1976 2691 CONECT 2649 2653 2680 CONECT 2650 2656 2663 CONECT 2651 2666 2670 CONECT 2652 2673 2677 CONECT 2653 2649 2654 2687 CONECT 2654 2653 2655 2658 CONECT 2655 2654 2656 2657 CONECT 2656 2650 2655 2687 CONECT 2657 2655 CONECT 2658 2654 2659 CONECT 2659 2658 2660 CONECT 2660 2659 2661 2662 CONECT 2661 2660 CONECT 2662 2660 CONECT 2663 2650 2664 2688 CONECT 2664 2663 2665 2667 CONECT 2665 2664 2666 2668 CONECT 2666 2651 2665 2688 CONECT 2667 2664 CONECT 2668 2665 2669 CONECT 2669 2668 CONECT 2670 2651 2671 2689 CONECT 2671 2670 2672 2674 CONECT 2672 2671 2673 2675 CONECT 2673 2652 2672 2689 CONECT 2674 2671 CONECT 2675 2672 2676 CONECT 2676 2675 CONECT 2677 2652 2678 2690 CONECT 2678 2677 2679 2681 CONECT 2679 2678 2680 2682 CONECT 2680 2649 2679 2690 CONECT 2681 2678 CONECT 2682 2679 2683 CONECT 2683 2682 2684 CONECT 2684 2683 2685 2686 CONECT 2685 2684 CONECT 2686 2684 CONECT 2687 2653 2656 2691 CONECT 2688 2663 2666 2691 CONECT 2689 2670 2673 2691 CONECT 2690 2677 2680 2691 CONECT 2691 1976 2687 2688 2689 CONECT 2691 2690 2693 CONECT 2692 2693 CONECT 2693 2691 2692 MASTER 467 0 2 16 12 0 0 6 3396 1 47 31 END