data_9AZ3 # _entry.id 9AZ3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9AZ3 pdb_00009az3 10.2210/pdb9az3/pdb WWPDB D_1000282313 ? ? EMDB EMD-44008 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-08-20 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9AZ3 _pdbx_database_status.recvd_initial_deposition_date 2024-03-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM reveals molecular basis underlying the inhibitory effect of netrin-4 on laminin polymerization' _pdbx_database_related.db_id EMD-44008 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email arek.kulczyk@rutgers.edu _pdbx_contact_author.name_first Arek _pdbx_contact_author.name_last Kulczyk _pdbx_contact_author.name_mi W _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5018-0992 # _audit_author.name 'Kulczyk, A.W.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0001-5018-0992 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 7256 _citation.page_last 7256 _citation.title 'Cryo-EM reveals molecular mechanisms underlying the inhibitory effect of netrin-4 on laminin matrix formation.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-62814-7 _citation.pdbx_database_id_PubMed 40769979 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kulczyk, A.W.' 1 0000-0001-5018-0992 primary 'McKee, K.K.' 2 0000-0002-2657-5211 primary 'Yurchenco, P.D.' 3 0000-0003-0387-2317 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Laminin subunit gamma-1' 34152.922 1 ? ? ? ? 2 polymer man Netrin-4 32177.734 1 ? ? 'UNP residues 43-326' ? 3 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 7 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;Laminin B2 chain,Laminin-1 subunit gamma,Laminin-10 subunit gamma,Laminin-11 subunit gamma,Laminin-2 subunit gamma,Laminin-3 subunit gamma,Laminin-4 subunit gamma,Laminin-6 subunit gamma,Laminin-7 subunit gamma,Laminin-8 subunit gamma,Laminin-9 subunit gamma,S-laminin subunit gamma,S-LAM gamma ; 2 Beta-netrin # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MDECTDEGGRPQRCMPEFVNAAFNVTVVATNTCGTPPEEYCVQTGVTGVTKSCHLCDAGQPHLQHGAAFLTDYNNQADTT WWQSQTMLAGVQYPSSINLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTWEDGPWIPYQYYSGSCENTYSKANRGFIRT GGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDISVTLNRLNTFGDEVFNRPKVLKSYYYA ISDFAVGGRCKCNGHASECMKNEFDKLVCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLP ; ;MDECTDEGGRPQRCMPEFVNAAFNVTVVATNTCGTPPEEYCVQTGVTGVTKSCHLCDAGQPHLQHGAAFLTDYNNQADTT WWQSQTMLAGVQYPSSINLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTWEDGPWIPYQYYSGSCENTYSKANRGFIRT GGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDISVTLNRLNTFGDEVFNRPKVLKSYYYA ISDFAVGGRCKCNGHASECMKNEFDKLVCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLP ; G ? 2 'polypeptide(L)' no no ;LGRKLRADTMCGQNATELFCFYSENADLTCRQPKCDKCNAAHSHLAHPPSAMADSSFRFPRTWWQSAEDVHREKIQLDLE AEFYFTHLIMVFKSPRPAAMVLDRSQDFGKTWKPYKYFATNCSATFGLEDDVVKKGAICTSRYSNPFPCTGGEVIFRALS PPYDIENPYSAKVQEQLKITNLRVRLLKRQSCPCQINDLNAKPHHFMHYAVYDFIVKGSCFCNGHADQCLPVEGFRPIKA PGAFHVVHGRCMCKHNTAGSHCQHCAPLYNDRPWEAADGRTGAP ; ;LGRKLRADTMCGQNATELFCFYSENADLTCRQPKCDKCNAAHSHLAHPPSAMADSSFRFPRTWWQSAEDVHREKIQLDLE AEFYFTHLIMVFKSPRPAAMVLDRSQDFGKTWKPYKYFATNCSATFGLEDDVVKKGAICTSRYSNPFPCTGGEVIFRALS PPYDIENPYSAKVQEQLKITNLRVRLLKRQSCPCQINDLNAKPHHFMHYAVYDFIVKGSCFCNGHADQCLPVEGFRPIKA PGAFHVVHGRCMCKHNTAGSHCQHCAPLYNDRPWEAADGRTGAP ; N ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 GLU n 1 4 CYS n 1 5 THR n 1 6 ASP n 1 7 GLU n 1 8 GLY n 1 9 GLY n 1 10 ARG n 1 11 PRO n 1 12 GLN n 1 13 ARG n 1 14 CYS n 1 15 MET n 1 16 PRO n 1 17 GLU n 1 18 PHE n 1 19 VAL n 1 20 ASN n 1 21 ALA n 1 22 ALA n 1 23 PHE n 1 24 ASN n 1 25 VAL n 1 26 THR n 1 27 VAL n 1 28 VAL n 1 29 ALA n 1 30 THR n 1 31 ASN n 1 32 THR n 1 33 CYS n 1 34 GLY n 1 35 THR n 1 36 PRO n 1 37 PRO n 1 38 GLU n 1 39 GLU n 1 40 TYR n 1 41 CYS n 1 42 VAL n 1 43 GLN n 1 44 THR n 1 45 GLY n 1 46 VAL n 1 47 THR n 1 48 GLY n 1 49 VAL n 1 50 THR n 1 51 LYS n 1 52 SER n 1 53 CYS n 1 54 HIS n 1 55 LEU n 1 56 CYS n 1 57 ASP n 1 58 ALA n 1 59 GLY n 1 60 GLN n 1 61 PRO n 1 62 HIS n 1 63 LEU n 1 64 GLN n 1 65 HIS n 1 66 GLY n 1 67 ALA n 1 68 ALA n 1 69 PHE n 1 70 LEU n 1 71 THR n 1 72 ASP n 1 73 TYR n 1 74 ASN n 1 75 ASN n 1 76 GLN n 1 77 ALA n 1 78 ASP n 1 79 THR n 1 80 THR n 1 81 TRP n 1 82 TRP n 1 83 GLN n 1 84 SER n 1 85 GLN n 1 86 THR n 1 87 MET n 1 88 LEU n 1 89 ALA n 1 90 GLY n 1 91 VAL n 1 92 GLN n 1 93 TYR n 1 94 PRO n 1 95 SER n 1 96 SER n 1 97 ILE n 1 98 ASN n 1 99 LEU n 1 100 THR n 1 101 LEU n 1 102 HIS n 1 103 LEU n 1 104 GLY n 1 105 LYS n 1 106 ALA n 1 107 PHE n 1 108 ASP n 1 109 ILE n 1 110 THR n 1 111 TYR n 1 112 VAL n 1 113 ARG n 1 114 LEU n 1 115 LYS n 1 116 PHE n 1 117 HIS n 1 118 THR n 1 119 SER n 1 120 ARG n 1 121 PRO n 1 122 GLU n 1 123 SER n 1 124 PHE n 1 125 ALA n 1 126 ILE n 1 127 TYR n 1 128 LYS n 1 129 ARG n 1 130 THR n 1 131 TRP n 1 132 GLU n 1 133 ASP n 1 134 GLY n 1 135 PRO n 1 136 TRP n 1 137 ILE n 1 138 PRO n 1 139 TYR n 1 140 GLN n 1 141 TYR n 1 142 TYR n 1 143 SER n 1 144 GLY n 1 145 SER n 1 146 CYS n 1 147 GLU n 1 148 ASN n 1 149 THR n 1 150 TYR n 1 151 SER n 1 152 LYS n 1 153 ALA n 1 154 ASN n 1 155 ARG n 1 156 GLY n 1 157 PHE n 1 158 ILE n 1 159 ARG n 1 160 THR n 1 161 GLY n 1 162 GLY n 1 163 ASP n 1 164 GLU n 1 165 GLN n 1 166 GLN n 1 167 ALA n 1 168 LEU n 1 169 CYS n 1 170 THR n 1 171 ASP n 1 172 GLU n 1 173 PHE n 1 174 SER n 1 175 ASP n 1 176 ILE n 1 177 SER n 1 178 PRO n 1 179 LEU n 1 180 THR n 1 181 GLY n 1 182 GLY n 1 183 ASN n 1 184 VAL n 1 185 ALA n 1 186 PHE n 1 187 SER n 1 188 THR n 1 189 LEU n 1 190 GLU n 1 191 GLY n 1 192 ARG n 1 193 PRO n 1 194 SER n 1 195 ALA n 1 196 TYR n 1 197 ASN n 1 198 PHE n 1 199 ASP n 1 200 ASN n 1 201 SER n 1 202 PRO n 1 203 VAL n 1 204 LEU n 1 205 GLN n 1 206 GLU n 1 207 TRP n 1 208 VAL n 1 209 THR n 1 210 ALA n 1 211 THR n 1 212 ASP n 1 213 ILE n 1 214 SER n 1 215 VAL n 1 216 THR n 1 217 LEU n 1 218 ASN n 1 219 ARG n 1 220 LEU n 1 221 ASN n 1 222 THR n 1 223 PHE n 1 224 GLY n 1 225 ASP n 1 226 GLU n 1 227 VAL n 1 228 PHE n 1 229 ASN n 1 230 ARG n 1 231 PRO n 1 232 LYS n 1 233 VAL n 1 234 LEU n 1 235 LYS n 1 236 SER n 1 237 TYR n 1 238 TYR n 1 239 TYR n 1 240 ALA n 1 241 ILE n 1 242 SER n 1 243 ASP n 1 244 PHE n 1 245 ALA n 1 246 VAL n 1 247 GLY n 1 248 GLY n 1 249 ARG n 1 250 CYS n 1 251 LYS n 1 252 CYS n 1 253 ASN n 1 254 GLY n 1 255 HIS n 1 256 ALA n 1 257 SER n 1 258 GLU n 1 259 CYS n 1 260 MET n 1 261 LYS n 1 262 ASN n 1 263 GLU n 1 264 PHE n 1 265 ASP n 1 266 LYS n 1 267 LEU n 1 268 VAL n 1 269 CYS n 1 270 ASN n 1 271 CYS n 1 272 LYS n 1 273 HIS n 1 274 ASN n 1 275 THR n 1 276 TYR n 1 277 GLY n 1 278 VAL n 1 279 ASP n 1 280 CYS n 1 281 GLU n 1 282 LYS n 1 283 CYS n 1 284 LEU n 1 285 PRO n 1 286 PHE n 1 287 PHE n 1 288 ASN n 1 289 ASP n 1 290 ARG n 1 291 PRO n 1 292 TRP n 1 293 ARG n 1 294 ARG n 1 295 ALA n 1 296 THR n 1 297 ALA n 1 298 GLU n 1 299 SER n 1 300 ALA n 1 301 SER n 1 302 GLU n 1 303 CYS n 1 304 LEU n 1 305 PRO n 2 1 LEU n 2 2 GLY n 2 3 ARG n 2 4 LYS n 2 5 LEU n 2 6 ARG n 2 7 ALA n 2 8 ASP n 2 9 THR n 2 10 MET n 2 11 CYS n 2 12 GLY n 2 13 GLN n 2 14 ASN n 2 15 ALA n 2 16 THR n 2 17 GLU n 2 18 LEU n 2 19 PHE n 2 20 CYS n 2 21 PHE n 2 22 TYR n 2 23 SER n 2 24 GLU n 2 25 ASN n 2 26 ALA n 2 27 ASP n 2 28 LEU n 2 29 THR n 2 30 CYS n 2 31 ARG n 2 32 GLN n 2 33 PRO n 2 34 LYS n 2 35 CYS n 2 36 ASP n 2 37 LYS n 2 38 CYS n 2 39 ASN n 2 40 ALA n 2 41 ALA n 2 42 HIS n 2 43 SER n 2 44 HIS n 2 45 LEU n 2 46 ALA n 2 47 HIS n 2 48 PRO n 2 49 PRO n 2 50 SER n 2 51 ALA n 2 52 MET n 2 53 ALA n 2 54 ASP n 2 55 SER n 2 56 SER n 2 57 PHE n 2 58 ARG n 2 59 PHE n 2 60 PRO n 2 61 ARG n 2 62 THR n 2 63 TRP n 2 64 TRP n 2 65 GLN n 2 66 SER n 2 67 ALA n 2 68 GLU n 2 69 ASP n 2 70 VAL n 2 71 HIS n 2 72 ARG n 2 73 GLU n 2 74 LYS n 2 75 ILE n 2 76 GLN n 2 77 LEU n 2 78 ASP n 2 79 LEU n 2 80 GLU n 2 81 ALA n 2 82 GLU n 2 83 PHE n 2 84 TYR n 2 85 PHE n 2 86 THR n 2 87 HIS n 2 88 LEU n 2 89 ILE n 2 90 MET n 2 91 VAL n 2 92 PHE n 2 93 LYS n 2 94 SER n 2 95 PRO n 2 96 ARG n 2 97 PRO n 2 98 ALA n 2 99 ALA n 2 100 MET n 2 101 VAL n 2 102 LEU n 2 103 ASP n 2 104 ARG n 2 105 SER n 2 106 GLN n 2 107 ASP n 2 108 PHE n 2 109 GLY n 2 110 LYS n 2 111 THR n 2 112 TRP n 2 113 LYS n 2 114 PRO n 2 115 TYR n 2 116 LYS n 2 117 TYR n 2 118 PHE n 2 119 ALA n 2 120 THR n 2 121 ASN n 2 122 CYS n 2 123 SER n 2 124 ALA n 2 125 THR n 2 126 PHE n 2 127 GLY n 2 128 LEU n 2 129 GLU n 2 130 ASP n 2 131 ASP n 2 132 VAL n 2 133 VAL n 2 134 LYS n 2 135 LYS n 2 136 GLY n 2 137 ALA n 2 138 ILE n 2 139 CYS n 2 140 THR n 2 141 SER n 2 142 ARG n 2 143 TYR n 2 144 SER n 2 145 ASN n 2 146 PRO n 2 147 PHE n 2 148 PRO n 2 149 CYS n 2 150 THR n 2 151 GLY n 2 152 GLY n 2 153 GLU n 2 154 VAL n 2 155 ILE n 2 156 PHE n 2 157 ARG n 2 158 ALA n 2 159 LEU n 2 160 SER n 2 161 PRO n 2 162 PRO n 2 163 TYR n 2 164 ASP n 2 165 ILE n 2 166 GLU n 2 167 ASN n 2 168 PRO n 2 169 TYR n 2 170 SER n 2 171 ALA n 2 172 LYS n 2 173 VAL n 2 174 GLN n 2 175 GLU n 2 176 GLN n 2 177 LEU n 2 178 LYS n 2 179 ILE n 2 180 THR n 2 181 ASN n 2 182 LEU n 2 183 ARG n 2 184 VAL n 2 185 ARG n 2 186 LEU n 2 187 LEU n 2 188 LYS n 2 189 ARG n 2 190 GLN n 2 191 SER n 2 192 CYS n 2 193 PRO n 2 194 CYS n 2 195 GLN n 2 196 ILE n 2 197 ASN n 2 198 ASP n 2 199 LEU n 2 200 ASN n 2 201 ALA n 2 202 LYS n 2 203 PRO n 2 204 HIS n 2 205 HIS n 2 206 PHE n 2 207 MET n 2 208 HIS n 2 209 TYR n 2 210 ALA n 2 211 VAL n 2 212 TYR n 2 213 ASP n 2 214 PHE n 2 215 ILE n 2 216 VAL n 2 217 LYS n 2 218 GLY n 2 219 SER n 2 220 CYS n 2 221 PHE n 2 222 CYS n 2 223 ASN n 2 224 GLY n 2 225 HIS n 2 226 ALA n 2 227 ASP n 2 228 GLN n 2 229 CYS n 2 230 LEU n 2 231 PRO n 2 232 VAL n 2 233 GLU n 2 234 GLY n 2 235 PHE n 2 236 ARG n 2 237 PRO n 2 238 ILE n 2 239 LYS n 2 240 ALA n 2 241 PRO n 2 242 GLY n 2 243 ALA n 2 244 PHE n 2 245 HIS n 2 246 VAL n 2 247 VAL n 2 248 HIS n 2 249 GLY n 2 250 ARG n 2 251 CYS n 2 252 MET n 2 253 CYS n 2 254 LYS n 2 255 HIS n 2 256 ASN n 2 257 THR n 2 258 ALA n 2 259 GLY n 2 260 SER n 2 261 HIS n 2 262 CYS n 2 263 GLN n 2 264 HIS n 2 265 CYS n 2 266 ALA n 2 267 PRO n 2 268 LEU n 2 269 TYR n 2 270 ASN n 2 271 ASP n 2 272 ARG n 2 273 PRO n 2 274 TRP n 2 275 GLU n 2 276 ALA n 2 277 ALA n 2 278 ASP n 2 279 GLY n 2 280 ARG n 2 281 THR n 2 282 GLY n 2 283 ALA n 2 284 PRO n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 305 human ? 'LAMC1, LAMB2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 284 'house mouse' ? Ntn4 ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 37 ? ? ? G . n A 1 2 ASP 2 38 ? ? ? G . n A 1 3 GLU 3 39 ? ? ? G . n A 1 4 CYS 4 40 ? ? ? G . n A 1 5 THR 5 41 ? ? ? G . n A 1 6 ASP 6 42 ? ? ? G . n A 1 7 GLU 7 43 ? ? ? G . n A 1 8 GLY 8 44 ? ? ? G . n A 1 9 GLY 9 45 ? ? ? G . n A 1 10 ARG 10 46 ? ? ? G . n A 1 11 PRO 11 47 ? ? ? G . n A 1 12 GLN 12 48 ? ? ? G . n A 1 13 ARG 13 49 ? ? ? G . n A 1 14 CYS 14 50 50 CYS CYS G . n A 1 15 MET 15 51 51 MET MET G . n A 1 16 PRO 16 52 52 PRO PRO G . n A 1 17 GLU 17 53 53 GLU GLU G . n A 1 18 PHE 18 54 54 PHE PHE G . n A 1 19 VAL 19 55 55 VAL VAL G . n A 1 20 ASN 20 56 56 ASN ASN G . n A 1 21 ALA 21 57 57 ALA ALA G . n A 1 22 ALA 22 58 58 ALA ALA G . n A 1 23 PHE 23 59 59 PHE PHE G . n A 1 24 ASN 24 60 60 ASN ASN G . n A 1 25 VAL 25 61 61 VAL VAL G . n A 1 26 THR 26 62 62 THR THR G . n A 1 27 VAL 27 63 63 VAL VAL G . n A 1 28 VAL 28 64 64 VAL VAL G . n A 1 29 ALA 29 65 65 ALA ALA G . n A 1 30 THR 30 66 66 THR THR G . n A 1 31 ASN 31 67 67 ASN ASN G . n A 1 32 THR 32 68 68 THR THR G . n A 1 33 CYS 33 69 69 CYS CYS G . n A 1 34 GLY 34 70 70 GLY GLY G . n A 1 35 THR 35 71 71 THR THR G . n A 1 36 PRO 36 72 72 PRO PRO G . n A 1 37 PRO 37 73 73 PRO PRO G . n A 1 38 GLU 38 74 74 GLU GLU G . n A 1 39 GLU 39 75 75 GLU GLU G . n A 1 40 TYR 40 76 76 TYR TYR G . n A 1 41 CYS 41 77 77 CYS CYS G . n A 1 42 VAL 42 78 78 VAL VAL G . n A 1 43 GLN 43 79 79 GLN GLN G . n A 1 44 THR 44 80 80 THR THR G . n A 1 45 GLY 45 81 81 GLY GLY G . n A 1 46 VAL 46 82 82 VAL VAL G . n A 1 47 THR 47 83 83 THR THR G . n A 1 48 GLY 48 84 84 GLY GLY G . n A 1 49 VAL 49 85 85 VAL VAL G . n A 1 50 THR 50 86 86 THR THR G . n A 1 51 LYS 51 87 87 LYS LYS G . n A 1 52 SER 52 88 88 SER SER G . n A 1 53 CYS 53 89 89 CYS CYS G . n A 1 54 HIS 54 90 90 HIS HIS G . n A 1 55 LEU 55 91 91 LEU LEU G . n A 1 56 CYS 56 92 92 CYS CYS G . n A 1 57 ASP 57 93 93 ASP ASP G . n A 1 58 ALA 58 94 94 ALA ALA G . n A 1 59 GLY 59 95 95 GLY GLY G . n A 1 60 GLN 60 96 96 GLN GLN G . n A 1 61 PRO 61 97 97 PRO PRO G . n A 1 62 HIS 62 98 98 HIS HIS G . n A 1 63 LEU 63 99 99 LEU LEU G . n A 1 64 GLN 64 100 100 GLN GLN G . n A 1 65 HIS 65 101 101 HIS HIS G . n A 1 66 GLY 66 102 102 GLY GLY G . n A 1 67 ALA 67 103 103 ALA ALA G . n A 1 68 ALA 68 104 104 ALA ALA G . n A 1 69 PHE 69 105 105 PHE PHE G . n A 1 70 LEU 70 106 106 LEU LEU G . n A 1 71 THR 71 107 107 THR THR G . n A 1 72 ASP 72 108 108 ASP ASP G . n A 1 73 TYR 73 109 109 TYR TYR G . n A 1 74 ASN 74 110 110 ASN ASN G . n A 1 75 ASN 75 111 111 ASN ASN G . n A 1 76 GLN 76 112 112 GLN GLN G . n A 1 77 ALA 77 113 113 ALA ALA G . n A 1 78 ASP 78 114 114 ASP ASP G . n A 1 79 THR 79 115 115 THR THR G . n A 1 80 THR 80 116 116 THR THR G . n A 1 81 TRP 81 117 117 TRP TRP G . n A 1 82 TRP 82 118 118 TRP TRP G . n A 1 83 GLN 83 119 119 GLN GLN G . n A 1 84 SER 84 120 120 SER SER G . n A 1 85 GLN 85 121 121 GLN GLN G . n A 1 86 THR 86 122 122 THR THR G . n A 1 87 MET 87 123 123 MET MET G . n A 1 88 LEU 88 124 124 LEU LEU G . n A 1 89 ALA 89 125 125 ALA ALA G . n A 1 90 GLY 90 126 126 GLY GLY G . n A 1 91 VAL 91 127 127 VAL VAL G . n A 1 92 GLN 92 128 128 GLN GLN G . n A 1 93 TYR 93 129 129 TYR TYR G . n A 1 94 PRO 94 130 130 PRO PRO G . n A 1 95 SER 95 131 131 SER SER G . n A 1 96 SER 96 132 132 SER SER G . n A 1 97 ILE 97 133 133 ILE ILE G . n A 1 98 ASN 98 134 134 ASN ASN G . n A 1 99 LEU 99 135 135 LEU LEU G . n A 1 100 THR 100 136 136 THR THR G . n A 1 101 LEU 101 137 137 LEU LEU G . n A 1 102 HIS 102 138 138 HIS HIS G . n A 1 103 LEU 103 139 139 LEU LEU G . n A 1 104 GLY 104 140 140 GLY GLY G . n A 1 105 LYS 105 141 141 LYS LYS G . n A 1 106 ALA 106 142 142 ALA ALA G . n A 1 107 PHE 107 143 143 PHE PHE G . n A 1 108 ASP 108 144 144 ASP ASP G . n A 1 109 ILE 109 145 145 ILE ILE G . n A 1 110 THR 110 146 146 THR THR G . n A 1 111 TYR 111 147 147 TYR TYR G . n A 1 112 VAL 112 148 148 VAL VAL G . n A 1 113 ARG 113 149 149 ARG ARG G . n A 1 114 LEU 114 150 150 LEU LEU G . n A 1 115 LYS 115 151 151 LYS LYS G . n A 1 116 PHE 116 152 152 PHE PHE G . n A 1 117 HIS 117 153 153 HIS HIS G . n A 1 118 THR 118 154 154 THR THR G . n A 1 119 SER 119 155 155 SER SER G . n A 1 120 ARG 120 156 156 ARG ARG G . n A 1 121 PRO 121 157 157 PRO PRO G . n A 1 122 GLU 122 158 158 GLU GLU G . n A 1 123 SER 123 159 159 SER SER G . n A 1 124 PHE 124 160 160 PHE PHE G . n A 1 125 ALA 125 161 161 ALA ALA G . n A 1 126 ILE 126 162 162 ILE ILE G . n A 1 127 TYR 127 163 163 TYR TYR G . n A 1 128 LYS 128 164 164 LYS LYS G . n A 1 129 ARG 129 165 165 ARG ARG G . n A 1 130 THR 130 166 166 THR THR G . n A 1 131 TRP 131 167 167 TRP TRP G . n A 1 132 GLU 132 168 168 GLU GLU G . n A 1 133 ASP 133 169 169 ASP ASP G . n A 1 134 GLY 134 170 170 GLY GLY G . n A 1 135 PRO 135 171 171 PRO PRO G . n A 1 136 TRP 136 172 172 TRP TRP G . n A 1 137 ILE 137 173 173 ILE ILE G . n A 1 138 PRO 138 174 174 PRO PRO G . n A 1 139 TYR 139 175 175 TYR TYR G . n A 1 140 GLN 140 176 176 GLN GLN G . n A 1 141 TYR 141 177 177 TYR TYR G . n A 1 142 TYR 142 178 178 TYR TYR G . n A 1 143 SER 143 179 179 SER SER G . n A 1 144 GLY 144 180 180 GLY GLY G . n A 1 145 SER 145 181 181 SER SER G . n A 1 146 CYS 146 182 182 CYS CYS G . n A 1 147 GLU 147 183 183 GLU GLU G . n A 1 148 ASN 148 184 184 ASN ASN G . n A 1 149 THR 149 185 185 THR THR G . n A 1 150 TYR 150 186 186 TYR TYR G . n A 1 151 SER 151 187 187 SER SER G . n A 1 152 LYS 152 188 188 LYS LYS G . n A 1 153 ALA 153 189 189 ALA ALA G . n A 1 154 ASN 154 190 190 ASN ASN G . n A 1 155 ARG 155 191 191 ARG ARG G . n A 1 156 GLY 156 192 192 GLY GLY G . n A 1 157 PHE 157 193 193 PHE PHE G . n A 1 158 ILE 158 194 194 ILE ILE G . n A 1 159 ARG 159 195 ? ? ? G . n A 1 160 THR 160 196 ? ? ? G . n A 1 161 GLY 161 197 ? ? ? G . n A 1 162 GLY 162 198 ? ? ? G . n A 1 163 ASP 163 199 ? ? ? G . n A 1 164 GLU 164 200 ? ? ? G . n A 1 165 GLN 165 201 201 GLN GLN G . n A 1 166 GLN 166 202 202 GLN GLN G . n A 1 167 ALA 167 203 203 ALA ALA G . n A 1 168 LEU 168 204 204 LEU LEU G . n A 1 169 CYS 169 205 205 CYS CYS G . n A 1 170 THR 170 206 206 THR THR G . n A 1 171 ASP 171 207 207 ASP ASP G . n A 1 172 GLU 172 208 208 GLU GLU G . n A 1 173 PHE 173 209 209 PHE PHE G . n A 1 174 SER 174 210 210 SER SER G . n A 1 175 ASP 175 211 211 ASP ASP G . n A 1 176 ILE 176 212 212 ILE ILE G . n A 1 177 SER 177 213 213 SER SER G . n A 1 178 PRO 178 214 214 PRO PRO G . n A 1 179 LEU 179 215 215 LEU LEU G . n A 1 180 THR 180 216 216 THR THR G . n A 1 181 GLY 181 217 217 GLY GLY G . n A 1 182 GLY 182 218 218 GLY GLY G . n A 1 183 ASN 183 219 219 ASN ASN G . n A 1 184 VAL 184 220 220 VAL VAL G . n A 1 185 ALA 185 221 221 ALA ALA G . n A 1 186 PHE 186 222 222 PHE PHE G . n A 1 187 SER 187 223 223 SER SER G . n A 1 188 THR 188 224 224 THR THR G . n A 1 189 LEU 189 225 225 LEU LEU G . n A 1 190 GLU 190 226 226 GLU GLU G . n A 1 191 GLY 191 227 227 GLY GLY G . n A 1 192 ARG 192 228 228 ARG ARG G . n A 1 193 PRO 193 229 229 PRO PRO G . n A 1 194 SER 194 230 230 SER SER G . n A 1 195 ALA 195 231 231 ALA ALA G . n A 1 196 TYR 196 232 232 TYR TYR G . n A 1 197 ASN 197 233 233 ASN ASN G . n A 1 198 PHE 198 234 234 PHE PHE G . n A 1 199 ASP 199 235 235 ASP ASP G . n A 1 200 ASN 200 236 236 ASN ASN G . n A 1 201 SER 201 237 237 SER SER G . n A 1 202 PRO 202 238 238 PRO PRO G . n A 1 203 VAL 203 239 239 VAL VAL G . n A 1 204 LEU 204 240 240 LEU LEU G . n A 1 205 GLN 205 241 241 GLN GLN G . n A 1 206 GLU 206 242 242 GLU GLU G . n A 1 207 TRP 207 243 243 TRP TRP G . n A 1 208 VAL 208 244 244 VAL VAL G . n A 1 209 THR 209 245 245 THR THR G . n A 1 210 ALA 210 246 246 ALA ALA G . n A 1 211 THR 211 247 247 THR THR G . n A 1 212 ASP 212 248 248 ASP ASP G . n A 1 213 ILE 213 249 249 ILE ILE G . n A 1 214 SER 214 250 250 SER SER G . n A 1 215 VAL 215 251 251 VAL VAL G . n A 1 216 THR 216 252 252 THR THR G . n A 1 217 LEU 217 253 253 LEU LEU G . n A 1 218 ASN 218 254 254 ASN ASN G . n A 1 219 ARG 219 255 255 ARG ARG G . n A 1 220 LEU 220 256 256 LEU LEU G . n A 1 221 ASN 221 257 257 ASN ASN G . n A 1 222 THR 222 258 258 THR THR G . n A 1 223 PHE 223 259 259 PHE PHE G . n A 1 224 GLY 224 260 260 GLY GLY G . n A 1 225 ASP 225 261 261 ASP ASP G . n A 1 226 GLU 226 262 262 GLU GLU G . n A 1 227 VAL 227 263 263 VAL VAL G . n A 1 228 PHE 228 264 264 PHE PHE G . n A 1 229 ASN 229 265 265 ASN ASN G . n A 1 230 ARG 230 266 266 ARG ARG G . n A 1 231 PRO 231 267 267 PRO PRO G . n A 1 232 LYS 232 268 268 LYS LYS G . n A 1 233 VAL 233 269 269 VAL VAL G . n A 1 234 LEU 234 270 270 LEU LEU G . n A 1 235 LYS 235 271 271 LYS LYS G . n A 1 236 SER 236 272 272 SER SER G . n A 1 237 TYR 237 273 273 TYR TYR G . n A 1 238 TYR 238 274 274 TYR TYR G . n A 1 239 TYR 239 275 275 TYR TYR G . n A 1 240 ALA 240 276 276 ALA ALA G . n A 1 241 ILE 241 277 277 ILE ILE G . n A 1 242 SER 242 278 278 SER SER G . n A 1 243 ASP 243 279 279 ASP ASP G . n A 1 244 PHE 244 280 280 PHE PHE G . n A 1 245 ALA 245 281 281 ALA ALA G . n A 1 246 VAL 246 282 282 VAL VAL G . n A 1 247 GLY 247 283 283 GLY GLY G . n A 1 248 GLY 248 284 284 GLY GLY G . n A 1 249 ARG 249 285 285 ARG ARG G . n A 1 250 CYS 250 286 286 CYS CYS G . n A 1 251 LYS 251 287 287 LYS LYS G . n A 1 252 CYS 252 288 288 CYS CYS G . n A 1 253 ASN 253 289 289 ASN ASN G . n A 1 254 GLY 254 290 290 GLY GLY G . n A 1 255 HIS 255 291 291 HIS HIS G . n A 1 256 ALA 256 292 292 ALA ALA G . n A 1 257 SER 257 293 293 SER SER G . n A 1 258 GLU 258 294 294 GLU GLU G . n A 1 259 CYS 259 295 295 CYS CYS G . n A 1 260 MET 260 296 296 MET MET G . n A 1 261 LYS 261 297 297 LYS LYS G . n A 1 262 ASN 262 298 298 ASN ASN G . n A 1 263 GLU 263 299 299 GLU GLU G . n A 1 264 PHE 264 300 300 PHE PHE G . n A 1 265 ASP 265 301 301 ASP ASP G . n A 1 266 LYS 266 302 302 LYS LYS G . n A 1 267 LEU 267 303 303 LEU LEU G . n A 1 268 VAL 268 304 304 VAL VAL G . n A 1 269 CYS 269 305 305 CYS CYS G . n A 1 270 ASN 270 306 306 ASN ASN G . n A 1 271 CYS 271 307 307 CYS CYS G . n A 1 272 LYS 272 308 308 LYS LYS G . n A 1 273 HIS 273 309 309 HIS HIS G . n A 1 274 ASN 274 310 310 ASN ASN G . n A 1 275 THR 275 311 311 THR THR G . n A 1 276 TYR 276 312 312 TYR TYR G . n A 1 277 GLY 277 313 ? ? ? G . n A 1 278 VAL 278 314 ? ? ? G . n A 1 279 ASP 279 315 ? ? ? G . n A 1 280 CYS 280 316 ? ? ? G . n A 1 281 GLU 281 317 ? ? ? G . n A 1 282 LYS 282 318 ? ? ? G . n A 1 283 CYS 283 319 ? ? ? G . n A 1 284 LEU 284 320 ? ? ? G . n A 1 285 PRO 285 321 ? ? ? G . n A 1 286 PHE 286 322 ? ? ? G . n A 1 287 PHE 287 323 ? ? ? G . n A 1 288 ASN 288 324 ? ? ? G . n A 1 289 ASP 289 325 ? ? ? G . n A 1 290 ARG 290 326 ? ? ? G . n A 1 291 PRO 291 327 ? ? ? G . n A 1 292 TRP 292 328 ? ? ? G . n A 1 293 ARG 293 329 ? ? ? G . n A 1 294 ARG 294 330 ? ? ? G . n A 1 295 ALA 295 331 ? ? ? G . n A 1 296 THR 296 332 ? ? ? G . n A 1 297 ALA 297 333 ? ? ? G . n A 1 298 GLU 298 334 ? ? ? G . n A 1 299 SER 299 335 ? ? ? G . n A 1 300 ALA 300 336 ? ? ? G . n A 1 301 SER 301 337 ? ? ? G . n A 1 302 GLU 302 338 ? ? ? G . n A 1 303 CYS 303 339 ? ? ? G . n A 1 304 LEU 304 340 ? ? ? G . n A 1 305 PRO 305 341 ? ? ? G . n B 2 1 LEU 1 43 43 LEU LEU N . n B 2 2 GLY 2 44 44 GLY GLY N . n B 2 3 ARG 3 45 45 ARG ARG N . n B 2 4 LYS 4 46 46 LYS LYS N . n B 2 5 LEU 5 47 47 LEU LEU N . n B 2 6 ARG 6 48 48 ARG ARG N . n B 2 7 ALA 7 49 49 ALA ALA N . n B 2 8 ASP 8 50 50 ASP ASP N . n B 2 9 THR 9 51 51 THR THR N . n B 2 10 MET 10 52 52 MET MET N . n B 2 11 CYS 11 53 53 CYS CYS N . n B 2 12 GLY 12 54 54 GLY GLY N . n B 2 13 GLN 13 55 55 GLN GLN N . n B 2 14 ASN 14 56 56 ASN ASN N . n B 2 15 ALA 15 57 57 ALA ALA N . n B 2 16 THR 16 58 58 THR THR N . n B 2 17 GLU 17 59 59 GLU GLU N . n B 2 18 LEU 18 60 60 LEU LEU N . n B 2 19 PHE 19 61 61 PHE PHE N . n B 2 20 CYS 20 62 62 CYS CYS N . n B 2 21 PHE 21 63 63 PHE PHE N . n B 2 22 TYR 22 64 64 TYR TYR N . n B 2 23 SER 23 65 65 SER SER N . n B 2 24 GLU 24 66 66 GLU GLU N . n B 2 25 ASN 25 67 67 ASN ASN N . n B 2 26 ALA 26 68 68 ALA ALA N . n B 2 27 ASP 27 69 69 ASP ASP N . n B 2 28 LEU 28 70 70 LEU LEU N . n B 2 29 THR 29 71 71 THR THR N . n B 2 30 CYS 30 72 72 CYS CYS N . n B 2 31 ARG 31 73 73 ARG ARG N . n B 2 32 GLN 32 74 74 GLN GLN N . n B 2 33 PRO 33 75 75 PRO PRO N . n B 2 34 LYS 34 76 76 LYS LYS N . n B 2 35 CYS 35 77 77 CYS CYS N . n B 2 36 ASP 36 78 78 ASP ASP N . n B 2 37 LYS 37 79 79 LYS LYS N . n B 2 38 CYS 38 80 80 CYS CYS N . n B 2 39 ASN 39 81 81 ASN ASN N . n B 2 40 ALA 40 82 82 ALA ALA N . n B 2 41 ALA 41 83 83 ALA ALA N . n B 2 42 HIS 42 84 84 HIS HIS N . n B 2 43 SER 43 85 85 SER SER N . n B 2 44 HIS 44 86 86 HIS HIS N . n B 2 45 LEU 45 87 87 LEU LEU N . n B 2 46 ALA 46 88 88 ALA ALA N . n B 2 47 HIS 47 89 89 HIS HIS N . n B 2 48 PRO 48 90 90 PRO PRO N . n B 2 49 PRO 49 91 91 PRO PRO N . n B 2 50 SER 50 92 92 SER SER N . n B 2 51 ALA 51 93 93 ALA ALA N . n B 2 52 MET 52 94 94 MET MET N . n B 2 53 ALA 53 95 95 ALA ALA N . n B 2 54 ASP 54 96 96 ASP ASP N . n B 2 55 SER 55 97 97 SER SER N . n B 2 56 SER 56 98 98 SER SER N . n B 2 57 PHE 57 99 99 PHE PHE N . n B 2 58 ARG 58 100 100 ARG ARG N . n B 2 59 PHE 59 101 101 PHE PHE N . n B 2 60 PRO 60 102 102 PRO PRO N . n B 2 61 ARG 61 103 103 ARG ARG N . n B 2 62 THR 62 104 104 THR THR N . n B 2 63 TRP 63 105 105 TRP TRP N . n B 2 64 TRP 64 106 106 TRP TRP N . n B 2 65 GLN 65 107 107 GLN GLN N . n B 2 66 SER 66 108 108 SER SER N . n B 2 67 ALA 67 109 109 ALA ALA N . n B 2 68 GLU 68 110 110 GLU GLU N . n B 2 69 ASP 69 111 111 ASP ASP N . n B 2 70 VAL 70 112 112 VAL VAL N . n B 2 71 HIS 71 113 113 HIS HIS N . n B 2 72 ARG 72 114 114 ARG ARG N . n B 2 73 GLU 73 115 115 GLU GLU N . n B 2 74 LYS 74 116 116 LYS LYS N . n B 2 75 ILE 75 117 117 ILE ILE N . n B 2 76 GLN 76 118 118 GLN GLN N . n B 2 77 LEU 77 119 119 LEU LEU N . n B 2 78 ASP 78 120 120 ASP ASP N . n B 2 79 LEU 79 121 121 LEU LEU N . n B 2 80 GLU 80 122 122 GLU GLU N . n B 2 81 ALA 81 123 123 ALA ALA N . n B 2 82 GLU 82 124 124 GLU GLU N . n B 2 83 PHE 83 125 125 PHE PHE N . n B 2 84 TYR 84 126 126 TYR TYR N . n B 2 85 PHE 85 127 127 PHE PHE N . n B 2 86 THR 86 128 128 THR THR N . n B 2 87 HIS 87 129 129 HIS HIS N . n B 2 88 LEU 88 130 130 LEU LEU N . n B 2 89 ILE 89 131 131 ILE ILE N . n B 2 90 MET 90 132 132 MET MET N . n B 2 91 VAL 91 133 133 VAL VAL N . n B 2 92 PHE 92 134 134 PHE PHE N . n B 2 93 LYS 93 135 135 LYS LYS N . n B 2 94 SER 94 136 136 SER SER N . n B 2 95 PRO 95 137 137 PRO PRO N . n B 2 96 ARG 96 138 138 ARG ARG N . n B 2 97 PRO 97 139 139 PRO PRO N . n B 2 98 ALA 98 140 140 ALA ALA N . n B 2 99 ALA 99 141 141 ALA ALA N . n B 2 100 MET 100 142 142 MET MET N . n B 2 101 VAL 101 143 143 VAL VAL N . n B 2 102 LEU 102 144 144 LEU LEU N . n B 2 103 ASP 103 145 145 ASP ASP N . n B 2 104 ARG 104 146 146 ARG ARG N . n B 2 105 SER 105 147 147 SER SER N . n B 2 106 GLN 106 148 148 GLN GLN N . n B 2 107 ASP 107 149 149 ASP ASP N . n B 2 108 PHE 108 150 150 PHE PHE N . n B 2 109 GLY 109 151 151 GLY GLY N . n B 2 110 LYS 110 152 152 LYS LYS N . n B 2 111 THR 111 153 153 THR THR N . n B 2 112 TRP 112 154 154 TRP TRP N . n B 2 113 LYS 113 155 155 LYS LYS N . n B 2 114 PRO 114 156 156 PRO PRO N . n B 2 115 TYR 115 157 157 TYR TYR N . n B 2 116 LYS 116 158 158 LYS LYS N . n B 2 117 TYR 117 159 159 TYR TYR N . n B 2 118 PHE 118 160 160 PHE PHE N . n B 2 119 ALA 119 161 161 ALA ALA N . n B 2 120 THR 120 162 162 THR THR N . n B 2 121 ASN 121 163 163 ASN ASN N . n B 2 122 CYS 122 164 164 CYS CYS N . n B 2 123 SER 123 165 165 SER SER N . n B 2 124 ALA 124 166 166 ALA ALA N . n B 2 125 THR 125 167 167 THR THR N . n B 2 126 PHE 126 168 168 PHE PHE N . n B 2 127 GLY 127 169 ? ? ? N . n B 2 128 LEU 128 170 ? ? ? N . n B 2 129 GLU 129 171 ? ? ? N . n B 2 130 ASP 130 172 ? ? ? N . n B 2 131 ASP 131 173 ? ? ? N . n B 2 132 VAL 132 174 ? ? ? N . n B 2 133 VAL 133 175 ? ? ? N . n B 2 134 LYS 134 176 176 LYS LYS N . n B 2 135 LYS 135 177 177 LYS LYS N . n B 2 136 GLY 136 178 178 GLY GLY N . n B 2 137 ALA 137 179 179 ALA ALA N . n B 2 138 ILE 138 180 180 ILE ILE N . n B 2 139 CYS 139 181 181 CYS CYS N . n B 2 140 THR 140 182 182 THR THR N . n B 2 141 SER 141 183 183 SER SER N . n B 2 142 ARG 142 184 184 ARG ARG N . n B 2 143 TYR 143 185 185 TYR TYR N . n B 2 144 SER 144 186 186 SER SER N . n B 2 145 ASN 145 187 187 ASN ASN N . n B 2 146 PRO 146 188 188 PRO PRO N . n B 2 147 PHE 147 189 189 PHE PHE N . n B 2 148 PRO 148 190 190 PRO PRO N . n B 2 149 CYS 149 191 191 CYS CYS N . n B 2 150 THR 150 192 192 THR THR N . n B 2 151 GLY 151 193 ? ? ? N . n B 2 152 GLY 152 194 ? ? ? N . n B 2 153 GLU 153 195 ? ? ? N . n B 2 154 VAL 154 196 196 VAL VAL N . n B 2 155 ILE 155 197 197 ILE ILE N . n B 2 156 PHE 156 198 198 PHE PHE N . n B 2 157 ARG 157 199 199 ARG ARG N . n B 2 158 ALA 158 200 200 ALA ALA N . n B 2 159 LEU 159 201 201 LEU LEU N . n B 2 160 SER 160 202 202 SER SER N . n B 2 161 PRO 161 203 203 PRO PRO N . n B 2 162 PRO 162 204 204 PRO PRO N . n B 2 163 TYR 163 205 205 TYR TYR N . n B 2 164 ASP 164 206 206 ASP ASP N . n B 2 165 ILE 165 207 207 ILE ILE N . n B 2 166 GLU 166 208 208 GLU GLU N . n B 2 167 ASN 167 209 209 ASN ASN N . n B 2 168 PRO 168 210 210 PRO PRO N . n B 2 169 TYR 169 211 211 TYR TYR N . n B 2 170 SER 170 212 212 SER SER N . n B 2 171 ALA 171 213 213 ALA ALA N . n B 2 172 LYS 172 214 214 LYS LYS N . n B 2 173 VAL 173 215 215 VAL VAL N . n B 2 174 GLN 174 216 216 GLN GLN N . n B 2 175 GLU 175 217 217 GLU GLU N . n B 2 176 GLN 176 218 218 GLN GLN N . n B 2 177 LEU 177 219 219 LEU LEU N . n B 2 178 LYS 178 220 220 LYS LYS N . n B 2 179 ILE 179 221 221 ILE ILE N . n B 2 180 THR 180 222 222 THR THR N . n B 2 181 ASN 181 223 223 ASN ASN N . n B 2 182 LEU 182 224 224 LEU LEU N . n B 2 183 ARG 183 225 225 ARG ARG N . n B 2 184 VAL 184 226 226 VAL VAL N . n B 2 185 ARG 185 227 227 ARG ARG N . n B 2 186 LEU 186 228 228 LEU LEU N . n B 2 187 LEU 187 229 229 LEU LEU N . n B 2 188 LYS 188 230 230 LYS LYS N . n B 2 189 ARG 189 231 231 ARG ARG N . n B 2 190 GLN 190 232 232 GLN GLN N . n B 2 191 SER 191 233 233 SER SER N . n B 2 192 CYS 192 234 234 CYS CYS N . n B 2 193 PRO 193 235 235 PRO PRO N . n B 2 194 CYS 194 236 236 CYS CYS N . n B 2 195 GLN 195 237 237 GLN GLN N . n B 2 196 ILE 196 238 238 ILE ILE N . n B 2 197 ASN 197 239 239 ASN ASN N . n B 2 198 ASP 198 240 240 ASP ASP N . n B 2 199 LEU 199 241 241 LEU LEU N . n B 2 200 ASN 200 242 242 ASN ASN N . n B 2 201 ALA 201 243 243 ALA ALA N . n B 2 202 LYS 202 244 244 LYS LYS N . n B 2 203 PRO 203 245 245 PRO PRO N . n B 2 204 HIS 204 246 246 HIS HIS N . n B 2 205 HIS 205 247 247 HIS HIS N . n B 2 206 PHE 206 248 248 PHE PHE N . n B 2 207 MET 207 249 249 MET MET N . n B 2 208 HIS 208 250 250 HIS HIS N . n B 2 209 TYR 209 251 251 TYR TYR N . n B 2 210 ALA 210 252 252 ALA ALA N . n B 2 211 VAL 211 253 253 VAL VAL N . n B 2 212 TYR 212 254 254 TYR TYR N . n B 2 213 ASP 213 255 255 ASP ASP N . n B 2 214 PHE 214 256 256 PHE PHE N . n B 2 215 ILE 215 257 257 ILE ILE N . n B 2 216 VAL 216 258 258 VAL VAL N . n B 2 217 LYS 217 259 259 LYS LYS N . n B 2 218 GLY 218 260 260 GLY GLY N . n B 2 219 SER 219 261 261 SER SER N . n B 2 220 CYS 220 262 262 CYS CYS N . n B 2 221 PHE 221 263 263 PHE PHE N . n B 2 222 CYS 222 264 264 CYS CYS N . n B 2 223 ASN 223 265 265 ASN ASN N . n B 2 224 GLY 224 266 266 GLY GLY N . n B 2 225 HIS 225 267 267 HIS HIS N . n B 2 226 ALA 226 268 268 ALA ALA N . n B 2 227 ASP 227 269 269 ASP ASP N . n B 2 228 GLN 228 270 270 GLN GLN N . n B 2 229 CYS 229 271 271 CYS CYS N . n B 2 230 LEU 230 272 272 LEU LEU N . n B 2 231 PRO 231 273 ? ? ? N . n B 2 232 VAL 232 274 ? ? ? N . n B 2 233 GLU 233 275 ? ? ? N . n B 2 234 GLY 234 276 ? ? ? N . n B 2 235 PHE 235 277 ? ? ? N . n B 2 236 ARG 236 278 ? ? ? N . n B 2 237 PRO 237 279 ? ? ? N . n B 2 238 ILE 238 280 ? ? ? N . n B 2 239 LYS 239 281 ? ? ? N . n B 2 240 ALA 240 282 ? ? ? N . n B 2 241 PRO 241 283 ? ? ? N . n B 2 242 GLY 242 284 ? ? ? N . n B 2 243 ALA 243 285 ? ? ? N . n B 2 244 PHE 244 286 286 PHE PHE N . n B 2 245 HIS 245 287 287 HIS HIS N . n B 2 246 VAL 246 288 288 VAL VAL N . n B 2 247 VAL 247 289 289 VAL VAL N . n B 2 248 HIS 248 290 290 HIS HIS N . n B 2 249 GLY 249 291 291 GLY GLY N . n B 2 250 ARG 250 292 292 ARG ARG N . n B 2 251 CYS 251 293 293 CYS CYS N . n B 2 252 MET 252 294 294 MET MET N . n B 2 253 CYS 253 295 295 CYS CYS N . n B 2 254 LYS 254 296 296 LYS LYS N . n B 2 255 HIS 255 297 297 HIS HIS N . n B 2 256 ASN 256 298 298 ASN ASN N . n B 2 257 THR 257 299 299 THR THR N . n B 2 258 ALA 258 300 300 ALA ALA N . n B 2 259 GLY 259 301 301 GLY GLY N . n B 2 260 SER 260 302 302 SER SER N . n B 2 261 HIS 261 303 303 HIS HIS N . n B 2 262 CYS 262 304 304 CYS CYS N . n B 2 263 GLN 263 305 305 GLN GLN N . n B 2 264 HIS 264 306 306 HIS HIS N . n B 2 265 CYS 265 307 307 CYS CYS N . n B 2 266 ALA 266 308 308 ALA ALA N . n B 2 267 PRO 267 309 309 PRO PRO N . n B 2 268 LEU 268 310 310 LEU LEU N . n B 2 269 TYR 269 311 311 TYR TYR N . n B 2 270 ASN 270 312 312 ASN ASN N . n B 2 271 ASP 271 313 313 ASP ASP N . n B 2 272 ARG 272 314 314 ARG ARG N . n B 2 273 PRO 273 315 315 PRO PRO N . n B 2 274 TRP 274 316 316 TRP TRP N . n B 2 275 GLU 275 317 317 GLU GLU N . n B 2 276 ALA 276 318 318 ALA ALA N . n B 2 277 ALA 277 319 319 ALA ALA N . n B 2 278 ASP 278 320 320 ASP ASP N . n B 2 279 GLY 279 321 321 GLY GLY N . n B 2 280 ARG 280 322 322 ARG ARG N . n B 2 281 THR 281 323 323 THR THR N . n B 2 282 GLY 282 324 324 GLY GLY N . n B 2 283 ALA 283 325 325 ALA ALA N . n B 2 284 PRO 284 326 ? ? ? N . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 401 343 NAG NAG G . D 3 NAG 1 402 344 NAG NAG G . E 3 NAG 1 403 345 NAG NAG G . F 3 NAG 1 401 330 NAG NAG N . G 3 NAG 1 402 331 NAG NAG N . H 3 NAG 1 403 332 NAG NAG N . I 3 NAG 1 404 333 NAG NAG N . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 G NAG 401 ? O1 ? C NAG 1 O1 2 1 N 1 G NAG 402 ? O1 ? D NAG 1 O1 3 1 N 1 G NAG 403 ? O1 ? E NAG 1 O1 4 1 N 1 N NAG 401 ? O1 ? F NAG 1 O1 5 1 N 1 N NAG 402 ? O1 ? G NAG 1 O1 6 1 N 1 N NAG 403 ? O1 ? H NAG 1 O1 7 1 N 1 N NAG 404 ? O1 ? I NAG 1 O1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9AZ3 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9AZ3 _struct.title 'Cryo-EM reveals molecular mechanisms underlying the inhibitory effect of netrin-4 on laminin matrix formation' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9AZ3 _struct_keywords.text 'Netrin-4, Laminin G1, Complex, Basement membrane, STRUCTURAL PROTEIN-INHIBITOR complex' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP LAMC1_HUMAN P11047 ? 1 ;MDECTDEGGRPQRCMPEFVNAAFNVTVVATNTCGTPPEEYCVQTGVTGVTKSCHLCDAGQPHLQHGAAFLTDYNNQADTT WWQSQTMLAGVQYPSSINLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRT GGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNDPKVLKSYYYA ISDFAVGGRCKCNGHASECMKNEFDKLVCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLP ; 37 2 UNP NET4_MOUSE Q9JI33 ? 2 ;LGRKLRADTMCGQNATELFCFYSENADLTCRQPKCDKCNAAHSHLAHPPSAMADSSFRFPRTWWQSAEDVHREKIQLDLE AEFYFTHLIMVFKSPRPAAMVLDRSQDFGKTWKPYKYFATNCSATFGLEDDVVKKGAICTSRYSNPFPCTGGEVIFRALS PPYDIENPYSAKVQEQLKITNLRVRLLKRQSCPCQINDLNAKPHHFMHYAVYDFIVKGSCFCNGHADQCLPVEGFRPIKA PGAFHVVHGRCMCKHNTAGSHCQHCAPLYNDRPWEAADGRTGAP ; 43 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9AZ3 G 1 ? 305 ? P11047 37 ? 341 ? 37 341 2 2 9AZ3 N 1 ? 284 ? Q9JI33 43 ? 326 ? 43 326 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9AZ3 TRP G 131 ? UNP P11047 ARG 167 conflict 167 1 1 9AZ3 SER G 214 ? UNP P11047 ARG 250 conflict 250 2 1 9AZ3 ARG G 230 ? UNP P11047 ASP 266 conflict 266 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 66 ? THR A 71 ? GLY G 102 THR G 107 1 ? 6 HELX_P HELX_P2 AA2 THR A 86 ? GLY A 90 ? THR G 122 GLY G 126 5 ? 5 HELX_P HELX_P3 AA3 SER A 145 ? TYR A 150 ? SER G 181 TYR G 186 1 ? 6 HELX_P HELX_P4 AA4 ASN A 197 ? ASN A 200 ? ASN G 233 ASN G 236 5 ? 4 HELX_P HELX_P5 AA5 SER A 201 ? THR A 209 ? SER G 237 THR G 245 1 ? 9 HELX_P HELX_P6 AA6 ARG A 230 ? TYR A 237 ? ARG G 266 TYR G 273 1 ? 8 HELX_P HELX_P7 AA7 PRO B 48 ? MET B 52 ? PRO N 90 MET N 94 5 ? 5 HELX_P HELX_P8 AA8 ASN B 121 ? PHE B 126 ? ASN N 163 PHE N 168 5 ? 6 HELX_P HELX_P9 AA9 SER B 160 ? ASP B 164 ? SER N 202 ASP N 206 5 ? 5 HELX_P HELX_P10 AB1 SER B 170 ? GLU B 175 ? SER N 212 GLU N 217 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 33 SG ? ? ? 1_555 A CYS 56 SG ? ? G CYS 69 G CYS 92 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 41 SG ? ? ? 1_555 A CYS 53 SG ? ? G CYS 77 G CYS 89 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf3 disulf ? ? A CYS 146 SG ? ? ? 1_555 A CYS 169 SG ? ? G CYS 182 G CYS 205 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf4 disulf ? ? A CYS 250 SG ? ? ? 1_555 A CYS 259 SG ? ? G CYS 286 G CYS 295 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf5 disulf ? ? A CYS 252 SG ? ? ? 1_555 A CYS 269 SG ? ? G CYS 288 G CYS 305 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf6 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 38 SG ? ? N CYS 53 N CYS 80 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf7 disulf ? ? B CYS 20 SG ? ? ? 1_555 B CYS 35 SG ? ? N CYS 62 N CYS 77 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf8 disulf ? ? B CYS 30 SG ? ? ? 1_555 B CYS 194 SG ? ? N CYS 72 N CYS 236 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf9 disulf ? ? B CYS 122 SG ? ? ? 1_555 B CYS 139 SG ? ? N CYS 164 N CYS 181 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf10 disulf ? ? B CYS 149 SG ? ? ? 1_555 B CYS 192 SG ? ? N CYS 191 N CYS 234 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf11 disulf ? ? B CYS 220 SG ? ? ? 1_555 B CYS 229 SG ? ? N CYS 262 N CYS 271 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf12 disulf ? ? B CYS 222 SG ? ? ? 1_555 B CYS 251 SG ? ? N CYS 264 N CYS 293 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf13 disulf ? ? B CYS 253 SG ? ? ? 1_555 B CYS 262 SG ? ? N CYS 295 N CYS 304 1_555 ? ? ? ? ? ? ? 2.030 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 33 ? CYS A 56 ? CYS G 69 ? 1_555 CYS G 92 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 41 ? CYS A 53 ? CYS G 77 ? 1_555 CYS G 89 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 146 ? CYS A 169 ? CYS G 182 ? 1_555 CYS G 205 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 250 ? CYS A 259 ? CYS G 286 ? 1_555 CYS G 295 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 252 ? CYS A 269 ? CYS G 288 ? 1_555 CYS G 305 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 11 ? CYS B 38 ? CYS N 53 ? 1_555 CYS N 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS B 20 ? CYS B 35 ? CYS N 62 ? 1_555 CYS N 77 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS B 30 ? CYS B 194 ? CYS N 72 ? 1_555 CYS N 236 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS B 122 ? CYS B 139 ? CYS N 164 ? 1_555 CYS N 181 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS B 149 ? CYS B 192 ? CYS N 191 ? 1_555 CYS N 234 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS B 220 ? CYS B 229 ? CYS N 262 ? 1_555 CYS N 271 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS B 222 ? CYS B 251 ? CYS N 264 ? 1_555 CYS N 293 ? 1_555 SG SG . . . None 'Disulfide bridge' 13 CYS B 253 ? CYS B 262 ? CYS N 295 ? 1_555 CYS N 304 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 147 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 189 _struct_mon_prot_cis.auth_asym_id N _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 148 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 190 _struct_mon_prot_cis.pdbx_auth_asym_id_2 N _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.53 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? AA3 ? 5 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 2 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 19 ? ASN A 20 ? VAL G 55 ASN G 56 AA1 2 ALA A 240 ? GLY A 248 ? ALA G 276 GLY G 284 AA1 3 TRP A 82 ? GLN A 83 ? TRP G 118 GLN G 119 AA2 1 VAL A 19 ? ASN A 20 ? VAL G 55 ASN G 56 AA2 2 ALA A 240 ? GLY A 248 ? ALA G 276 GLY G 284 AA2 3 TYR A 111 ? PHE A 116 ? TYR G 147 PHE G 152 AA2 4 ALA A 185 ? SER A 187 ? ALA G 221 SER G 223 AA3 1 VAL A 27 ? VAL A 28 ? VAL G 63 VAL G 64 AA3 2 ASN A 98 ? LEU A 101 ? ASN G 134 LEU G 137 AA3 3 ASP A 212 ? THR A 216 ? ASP G 248 THR G 252 AA3 4 SER A 123 ? ARG A 129 ? SER G 159 ARG G 165 AA3 5 TRP A 136 ? SER A 143 ? TRP G 172 SER G 179 AA4 1 TYR A 40 ? CYS A 41 ? TYR G 76 CYS G 77 AA4 2 CYS A 53 ? HIS A 54 ? CYS G 89 HIS G 90 AA5 1 PHE B 83 ? TYR B 84 ? PHE N 125 TYR N 126 AA5 2 LYS B 178 ? ILE B 179 ? LYS N 220 ILE N 221 AA6 1 MET B 100 ? ARG B 104 ? MET N 142 ARG N 146 AA6 2 LEU B 182 ? LEU B 186 ? LEU N 224 LEU N 228 AA7 1 THR B 257 ? ALA B 258 ? THR N 299 ALA N 300 AA7 2 HIS B 264 ? CYS B 265 ? HIS N 306 CYS N 307 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 19 ? N VAL G 55 O GLY A 248 ? O GLY G 284 AA1 2 3 O ILE A 241 ? O ILE G 277 N TRP A 82 ? N TRP G 118 AA2 1 2 N VAL A 19 ? N VAL G 55 O GLY A 248 ? O GLY G 284 AA2 2 3 O GLY A 247 ? O GLY G 283 N TYR A 111 ? N TYR G 147 AA2 3 4 N VAL A 112 ? N VAL G 148 O PHE A 186 ? O PHE G 222 AA3 1 2 N VAL A 28 ? N VAL G 64 O THR A 100 ? O THR G 136 AA3 2 3 N LEU A 101 ? N LEU G 137 O ILE A 213 ? O ILE G 249 AA3 3 4 O SER A 214 ? O SER G 250 N TYR A 127 ? N TYR G 163 AA3 4 5 N LYS A 128 ? N LYS G 164 O ILE A 137 ? O ILE G 173 AA4 1 2 N TYR A 40 ? N TYR G 76 O HIS A 54 ? O HIS G 90 AA5 1 2 N PHE B 83 ? N PHE N 125 O ILE B 179 ? O ILE N 221 AA6 1 2 N VAL B 101 ? N VAL N 143 O ARG B 185 ? O ARG N 227 AA7 1 2 N ALA B 258 ? N ALA N 300 O HIS B 264 ? O HIS N 306 # _pdbx_entry_details.entry_id 9AZ3 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O G LYS 308 ? ? OG1 G THR 311 ? ? 2.05 2 1 OG G SER 230 ? ? OD1 G ASN 233 ? ? 2.07 3 1 O N GLN 74 ? ? NZ N LYS 76 ? ? 2.10 4 1 O G VAL 61 ? ? OG1 G THR 107 ? ? 2.10 5 1 OD1 N ASN 163 ? ? OG N SER 165 ? ? 2.10 6 1 O N HIS 84 ? ? N N ALA 88 ? ? 2.10 7 1 OG1 G THR 258 ? ? OE2 G GLU 262 ? ? 2.13 8 1 O G LYS 151 ? ? OG G SER 278 ? ? 2.14 9 1 ND2 G ASN 111 ? ? OD1 G ASP 114 ? ? 2.14 10 1 O G PHE 234 ? ? NE2 G GLN 241 ? ? 2.14 11 1 O G TYR 163 ? ? OG G SER 250 ? ? 2.15 12 1 OE1 G GLN 176 ? ? N G LEU 204 ? ? 2.18 13 1 NH2 G ARG 156 ? ? OG G SER 213 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN G 110 ? ? 61.78 62.25 2 1 GLN G 128 ? ? -150.40 89.36 3 1 HIS G 138 ? ? -102.16 75.76 4 1 THR G 154 ? ? -93.57 -60.81 5 1 ASN G 184 ? ? -95.22 -60.72 6 1 LEU G 215 ? ? 67.02 -1.73 7 1 CYS G 295 ? ? -58.60 106.73 8 1 TYR N 64 ? ? -93.44 54.46 9 1 GLN N 107 ? ? -162.27 -167.63 10 1 ASP N 111 ? ? 38.14 47.47 11 1 ALA N 123 ? ? -171.10 -176.64 12 1 CYS N 181 ? ? -173.82 148.24 13 1 GLN N 232 ? ? -170.78 142.81 14 1 HIS N 250 ? ? -174.25 149.72 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id SER _pdbx_validate_main_chain_plane.auth_asym_id G _pdbx_validate_main_chain_plane.auth_seq_id 293 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.74 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9AZ3 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 9AZ3 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 71000 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name Net4dC-LmG1dC _em_entity_assembly.details 'A dimeric complex of the N-terminal fragments from netrin-4 and laminin gamma 1' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9AZ3 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type Quantifoil _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9AZ3 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9AZ3 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 G MET 37 ? A MET 1 2 1 Y 1 G ASP 38 ? A ASP 2 3 1 Y 1 G GLU 39 ? A GLU 3 4 1 Y 1 G CYS 40 ? A CYS 4 5 1 Y 1 G THR 41 ? A THR 5 6 1 Y 1 G ASP 42 ? A ASP 6 7 1 Y 1 G GLU 43 ? A GLU 7 8 1 Y 1 G GLY 44 ? A GLY 8 9 1 Y 1 G GLY 45 ? A GLY 9 10 1 Y 1 G ARG 46 ? A ARG 10 11 1 Y 1 G PRO 47 ? A PRO 11 12 1 Y 1 G GLN 48 ? A GLN 12 13 1 Y 1 G ARG 49 ? A ARG 13 14 1 Y 1 G ARG 195 ? A ARG 159 15 1 Y 1 G THR 196 ? A THR 160 16 1 Y 1 G GLY 197 ? A GLY 161 17 1 Y 1 G GLY 198 ? A GLY 162 18 1 Y 1 G ASP 199 ? A ASP 163 19 1 Y 1 G GLU 200 ? A GLU 164 20 1 Y 1 G GLY 313 ? A GLY 277 21 1 Y 1 G VAL 314 ? A VAL 278 22 1 Y 1 G ASP 315 ? A ASP 279 23 1 Y 1 G CYS 316 ? A CYS 280 24 1 Y 1 G GLU 317 ? A GLU 281 25 1 Y 1 G LYS 318 ? A LYS 282 26 1 Y 1 G CYS 319 ? A CYS 283 27 1 Y 1 G LEU 320 ? A LEU 284 28 1 Y 1 G PRO 321 ? A PRO 285 29 1 Y 1 G PHE 322 ? A PHE 286 30 1 Y 1 G PHE 323 ? A PHE 287 31 1 Y 1 G ASN 324 ? A ASN 288 32 1 Y 1 G ASP 325 ? A ASP 289 33 1 Y 1 G ARG 326 ? A ARG 290 34 1 Y 1 G PRO 327 ? A PRO 291 35 1 Y 1 G TRP 328 ? A TRP 292 36 1 Y 1 G ARG 329 ? A ARG 293 37 1 Y 1 G ARG 330 ? A ARG 294 38 1 Y 1 G ALA 331 ? A ALA 295 39 1 Y 1 G THR 332 ? A THR 296 40 1 Y 1 G ALA 333 ? A ALA 297 41 1 Y 1 G GLU 334 ? A GLU 298 42 1 Y 1 G SER 335 ? A SER 299 43 1 Y 1 G ALA 336 ? A ALA 300 44 1 Y 1 G SER 337 ? A SER 301 45 1 Y 1 G GLU 338 ? A GLU 302 46 1 Y 1 G CYS 339 ? A CYS 303 47 1 Y 1 G LEU 340 ? A LEU 304 48 1 Y 1 G PRO 341 ? A PRO 305 49 1 Y 1 N GLY 169 ? B GLY 127 50 1 Y 1 N LEU 170 ? B LEU 128 51 1 Y 1 N GLU 171 ? B GLU 129 52 1 Y 1 N ASP 172 ? B ASP 130 53 1 Y 1 N ASP 173 ? B ASP 131 54 1 Y 1 N VAL 174 ? B VAL 132 55 1 Y 1 N VAL 175 ? B VAL 133 56 1 Y 1 N GLY 193 ? B GLY 151 57 1 Y 1 N GLY 194 ? B GLY 152 58 1 Y 1 N GLU 195 ? B GLU 153 59 1 Y 1 N PRO 273 ? B PRO 231 60 1 Y 1 N VAL 274 ? B VAL 232 61 1 Y 1 N GLU 275 ? B GLU 233 62 1 Y 1 N GLY 276 ? B GLY 234 63 1 Y 1 N PHE 277 ? B PHE 235 64 1 Y 1 N ARG 278 ? B ARG 236 65 1 Y 1 N PRO 279 ? B PRO 237 66 1 Y 1 N ILE 280 ? B ILE 238 67 1 Y 1 N LYS 281 ? B LYS 239 68 1 Y 1 N ALA 282 ? B ALA 240 69 1 Y 1 N PRO 283 ? B PRO 241 70 1 Y 1 N GLY 284 ? B GLY 242 71 1 Y 1 N ALA 285 ? B ALA 243 72 1 Y 1 N PRO 326 ? B PRO 284 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_admin.current_status REL _em_admin.deposition_date 2024-03-09 _em_admin.deposition_site RCSB _em_admin.entry_id 9AZ3 _em_admin.last_update 2025-08-20 _em_admin.map_release_date 2025-08-20 _em_admin.title 'Cryo-EM reveals molecular mechanisms underlying the inhibitory effect of netrin-4 on laminin matrix formation' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.061 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 1.58 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? cryoSPARC 4 RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other government' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9AZ3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA N O S # loop_ #