HEADER HYDROLASE 14-MAR-24 9B20 TITLE CRYSTAL STRUCTURE OF ADP-RIBOSE DIPHOSPHATASE FROM KLEBSIELLA TITLE 2 PNEUMONIAE (AMP BOUND) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSE PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADP-RIBOSE DIPHOSPHATASE,ADP-RIBOSE PHOSPHOHYDROLASE, COMPND 5 ADENOSINE DIPHOSPHORIBOSE PYROPHOSPHATASE; COMPND 6 EC: 3.6.1.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: KPHS_45750; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: KLPNC.20447.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, ADP-RIBOSE DIPHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 27-MAR-24 9B20 0 JRNL AUTH L.LIU,S.LOVELL,G.W.BUCHKO,K.P.BATTAILE JRNL TITL CRYSTAL STRUCTURE OF ADP-RIBOSE DIPHOSPHATASE FROM JRNL TITL 2 KLEBSIELLA PNEUMONIAE (AMP BOUND) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_5243: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 48574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1600 - 3.9800 0.99 2843 157 0.1609 0.2022 REMARK 3 2 3.9800 - 3.1600 0.97 2669 200 0.1543 0.1867 REMARK 3 3 3.1600 - 2.7600 0.97 2756 138 0.1655 0.1872 REMARK 3 4 2.7600 - 2.5100 0.98 2765 139 0.1606 0.1976 REMARK 3 5 2.5100 - 2.3300 0.98 2778 127 0.1524 0.2002 REMARK 3 6 2.3300 - 2.1900 0.97 2735 135 0.1481 0.1886 REMARK 3 7 2.1900 - 2.0800 0.97 2740 100 0.1393 0.2051 REMARK 3 8 2.0800 - 1.9900 0.97 2731 124 0.1447 0.1720 REMARK 3 9 1.9900 - 1.9200 0.97 2722 142 0.1569 0.2023 REMARK 3 10 1.9200 - 1.8500 0.96 2676 154 0.1589 0.1890 REMARK 3 11 1.8500 - 1.7900 0.96 2705 140 0.1704 0.2136 REMARK 3 12 1.7900 - 1.7400 0.96 2678 180 0.1817 0.2297 REMARK 3 13 1.7400 - 1.7000 0.96 2668 142 0.1915 0.2487 REMARK 3 14 1.6900 - 1.6500 0.96 2710 122 0.2027 0.2322 REMARK 3 15 1.6500 - 1.6200 0.96 2637 162 0.2220 0.2843 REMARK 3 16 1.6200 - 1.5800 0.95 2705 129 0.2564 0.2937 REMARK 3 17 1.5800 - 1.5500 0.95 2621 144 0.2805 0.3273 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3296 REMARK 3 ANGLE : 1.024 4493 REMARK 3 CHIRALITY : 0.059 503 REMARK 3 PLANARITY : 0.011 580 REMARK 3 DIHEDRAL : 13.837 1218 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6739 16.8398 7.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.2446 REMARK 3 T33: 0.1546 T12: -0.0577 REMARK 3 T13: 0.0045 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.0553 L22: 0.1605 REMARK 3 L33: 0.1306 L12: 0.0627 REMARK 3 L13: 0.0054 L23: 0.0943 REMARK 3 S TENSOR REMARK 3 S11: -0.0944 S12: 0.1417 S13: -0.0565 REMARK 3 S21: 0.0098 S22: 0.1173 S23: -0.0272 REMARK 3 S31: 0.1152 S32: -0.0408 S33: -0.0021 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1087 13.9380 -3.8190 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1990 REMARK 3 T33: 0.1612 T12: -0.0196 REMARK 3 T13: 0.0075 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.1823 L22: 0.1716 REMARK 3 L33: 0.0306 L12: 0.1543 REMARK 3 L13: 0.0162 L23: 0.0910 REMARK 3 S TENSOR REMARK 3 S11: 0.0905 S12: -0.0094 S13: 0.1358 REMARK 3 S21: -0.0536 S22: 0.1663 S23: -0.1226 REMARK 3 S31: -0.1985 S32: 0.0970 S33: 0.0032 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8615 10.2613 14.9118 REMARK 3 T TENSOR REMARK 3 T11: 0.1676 T22: 0.1897 REMARK 3 T33: 0.1336 T12: -0.0176 REMARK 3 T13: -0.0262 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 0.7867 L22: 1.6113 REMARK 3 L33: 0.7683 L12: -1.1188 REMARK 3 L13: -0.6262 L23: 0.8572 REMARK 3 S TENSOR REMARK 3 S11: 0.1660 S12: -0.0100 S13: 0.1507 REMARK 3 S21: -0.1049 S22: 0.0062 S23: -0.1426 REMARK 3 S31: 0.2411 S32: -0.0093 S33: 0.2520 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3541 10.9749 -20.2906 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.1369 REMARK 3 T33: 0.1464 T12: -0.0006 REMARK 3 T13: -0.0051 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0608 L22: 0.0772 REMARK 3 L33: 0.1579 L12: -0.2340 REMARK 3 L13: -0.1046 L23: -0.0395 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.0690 S13: -0.0163 REMARK 3 S21: -0.0360 S22: -0.0261 S23: -0.0192 REMARK 3 S31: -0.0155 S32: 0.0180 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0704 25.1748 -20.5934 REMARK 3 T TENSOR REMARK 3 T11: 0.1677 T22: 0.2102 REMARK 3 T33: 0.2227 T12: 0.0021 REMARK 3 T13: 0.0009 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.1076 L22: 0.1877 REMARK 3 L33: 0.0990 L12: 0.0004 REMARK 3 L13: 0.0555 L23: -0.0845 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: 0.1968 S13: 0.1829 REMARK 3 S21: -0.1579 S22: -0.0501 S23: -0.2795 REMARK 3 S31: -0.0586 S32: 0.3446 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0497 18.8681 -14.1156 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.1248 REMARK 3 T33: 0.1265 T12: -0.0019 REMARK 3 T13: -0.0065 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.1388 L22: 0.1777 REMARK 3 L33: 0.1380 L12: -0.1303 REMARK 3 L13: 0.1709 L23: 0.0527 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: -0.0634 S13: 0.0186 REMARK 3 S21: 0.0039 S22: 0.0259 S23: 0.0029 REMARK 3 S31: -0.0367 S32: -0.0437 S33: 0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4243 19.5580 -32.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.2584 REMARK 3 T33: 0.2281 T12: 0.0177 REMARK 3 T13: 0.0083 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: -0.0009 L22: 0.0261 REMARK 3 L33: 0.0122 L12: 0.0030 REMARK 3 L13: -0.0035 L23: 0.0470 REMARK 3 S TENSOR REMARK 3 S11: -0.0984 S12: 0.3475 S13: 0.2612 REMARK 3 S21: -0.2883 S22: 0.0034 S23: -0.2096 REMARK 3 S31: -0.0013 S32: -0.1433 S33: 0.0004 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4058 10.8342 -20.2544 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.1484 REMARK 3 T33: 0.1367 T12: 0.0052 REMARK 3 T13: -0.0093 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.5455 L22: 0.6285 REMARK 3 L33: 0.3337 L12: 0.1295 REMARK 3 L13: 0.1812 L23: -0.4024 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.0127 S13: -0.1274 REMARK 3 S21: 0.0106 S22: 0.0252 S23: 0.1904 REMARK 3 S31: 0.0917 S32: -0.0662 S33: 0.0017 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5252 1.6481 -29.3929 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1537 REMARK 3 T33: 0.1435 T12: 0.0124 REMARK 3 T13: -0.0211 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.0726 L22: 0.2540 REMARK 3 L33: 0.4370 L12: 0.0856 REMARK 3 L13: 0.0046 L23: 0.0569 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: -0.1117 S13: 0.0853 REMARK 3 S21: 0.1027 S22: 0.0011 S23: 0.0573 REMARK 3 S31: 0.2588 S32: 0.0121 S33: 0.0190 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6496 6.7378 -25.1234 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.1934 REMARK 3 T33: 0.1711 T12: -0.0131 REMARK 3 T13: -0.0202 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.3116 L22: 0.2918 REMARK 3 L33: 0.3842 L12: -0.3167 REMARK 3 L13: -0.0765 L23: 0.3298 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: -0.0004 S13: -0.0323 REMARK 3 S21: 0.0587 S22: 0.1458 S23: -0.0859 REMARK 3 S31: -0.2361 S32: 0.1459 S33: 0.0138 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6060 2.7813 -4.2265 REMARK 3 T TENSOR REMARK 3 T11: 0.1505 T22: 0.1460 REMARK 3 T33: 0.1449 T12: -0.0004 REMARK 3 T13: -0.0131 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.1299 L22: 0.1993 REMARK 3 L33: 0.1521 L12: 0.0875 REMARK 3 L13: -0.0083 L23: -0.0811 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.0064 S13: -0.0167 REMARK 3 S21: -0.0161 S22: 0.0180 S23: 0.0209 REMARK 3 S31: 0.0562 S32: 0.0001 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4941 13.6637 1.7528 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1312 REMARK 3 T33: 0.1660 T12: -0.0036 REMARK 3 T13: -0.0166 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.1205 L22: 0.0519 REMARK 3 L33: 0.2010 L12: -0.0778 REMARK 3 L13: -0.1803 L23: 0.0914 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0098 S13: -0.0584 REMARK 3 S21: -0.0675 S22: 0.0708 S23: -0.1309 REMARK 3 S31: 0.0642 S32: 0.0593 S33: -0.0002 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0982 -6.3791 -4.9473 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.1695 REMARK 3 T33: 0.1921 T12: 0.0457 REMARK 3 T13: -0.0104 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.0201 L22: 0.0337 REMARK 3 L33: 0.2049 L12: -0.0041 REMARK 3 L13: -0.0352 L23: 0.0316 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.0874 S13: 0.1154 REMARK 3 S21: 0.2260 S22: -0.0134 S23: -0.0746 REMARK 3 S31: 0.2746 S32: -0.1423 S33: 0.0007 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2695 -7.7020 0.9159 REMARK 3 T TENSOR REMARK 3 T11: 0.2364 T22: 0.1777 REMARK 3 T33: 0.1597 T12: 0.0465 REMARK 3 T13: -0.0018 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.2687 L22: 0.2262 REMARK 3 L33: 0.8267 L12: -0.1975 REMARK 3 L13: -0.4591 L23: 0.3583 REMARK 3 S TENSOR REMARK 3 S11: -0.2241 S12: -0.2360 S13: 0.0757 REMARK 3 S21: 0.1904 S22: 0.1346 S23: -0.0110 REMARK 3 S31: 0.4971 S32: 0.3145 S33: -0.0113 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9863 -2.1046 -8.1805 REMARK 3 T TENSOR REMARK 3 T11: 0.1632 T22: 0.1374 REMARK 3 T33: 0.1369 T12: -0.0032 REMARK 3 T13: -0.0019 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.1822 L22: 0.2310 REMARK 3 L33: 0.2413 L12: -0.0957 REMARK 3 L13: -0.2745 L23: 0.1440 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: 0.0829 S13: -0.0700 REMARK 3 S21: 0.0260 S22: 0.0458 S23: -0.0196 REMARK 3 S31: 0.1698 S32: -0.0428 S33: 0.0004 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 148 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7230 3.6442 1.0103 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.1441 REMARK 3 T33: 0.1432 T12: -0.0035 REMARK 3 T13: -0.0031 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.4474 L22: 1.1475 REMARK 3 L33: 0.5914 L12: 0.1044 REMARK 3 L13: -0.1748 L23: -0.3181 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.0621 S13: -0.0086 REMARK 3 S21: 0.0264 S22: 0.0498 S23: 0.0205 REMARK 3 S31: -0.0021 S32: 0.0274 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9B20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG 3350, 0.1M TRIS, PH 8.5, 0.2 M REMARK 280 SODIUM ACETATE, KLPNC.20447.A.B1.PB00133 AT 26 MG/ML. 3 MINUTUE REMARK 280 SOAK IN 15 MM AMP. PLATE LIU-S-102, C1. PUCK: PSL-1003, CRYO: REMARK 280 DIRECT., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.39500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 GLY A 155 REMARK 465 ILE A 156 REMARK 465 HIS A 157 REMARK 465 GLY A 158 REMARK 465 LEU A 159 REMARK 465 ALA A 160 REMARK 465 GLU A 161 REMARK 465 GLU A 162 REMARK 465 ASN A 163 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 GLN B 6 REMARK 465 GLN B 7 REMARK 465 GLY B 8 REMARK 465 ILE B 9 REMARK 465 LYS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 THR B 10 OG1 CG2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 LEU B 159 CG CD1 CD2 REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 127 -76.74 -91.53 REMARK 500 SER A 133 75.56 -165.63 REMARK 500 ASP A 186 26.79 -149.00 REMARK 500 ILE B 127 -69.70 -103.35 REMARK 500 SER B 133 77.44 -166.54 REMARK 500 HIS B 157 -159.84 -128.79 REMARK 500 ASP B 186 35.79 -150.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 546 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 96 O REMARK 620 2 GLU A 116 OE2 92.1 REMARK 620 3 HOH A 404 O 172.3 88.4 REMARK 620 4 HOH A 410 O 94.4 85.6 93.4 REMARK 620 5 HOH A 456 O 91.8 175.3 87.4 96.7 REMARK 620 6 HOH A 499 O 81.6 84.0 90.8 168.8 93.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 96 O REMARK 620 2 GLU B 116 OE2 89.4 REMARK 620 3 HOH B 416 O 163.5 81.3 REMARK 620 4 HOH B 443 O 99.4 88.8 94.0 REMARK 620 5 HOH B 459 O 75.2 74.2 89.2 162.1 REMARK 620 6 HOH B 494 O 88.1 171.1 99.0 100.0 96.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 112 OE1 REMARK 620 2 GLU B 116 OE2 82.6 REMARK 620 3 GLU B 164 OE2 170.7 89.3 REMARK 620 4 HOH B 406 O 86.9 109.1 91.6 REMARK 620 5 HOH B 459 O 87.4 83.2 96.1 165.7 REMARK 620 6 HOH B 505 O 89.1 165.4 99.7 82.3 84.5 REMARK 620 N 1 2 3 4 5 DBREF1 9B20 A 1 210 UNP A0A0H3GVQ7_KLEPH DBREF2 9B20 A A0A0H3GVQ7 1 210 DBREF1 9B20 B 1 210 UNP A0A0H3GVQ7_KLEPH DBREF2 9B20 B A0A0H3GVQ7 1 210 SEQADV 9B20 MET A -7 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 ALA A -6 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS A -5 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS A -4 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS A -3 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS A -2 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS A -1 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS A 0 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 MET B -7 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 ALA B -6 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS B -5 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS B -4 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS B -3 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS B -2 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS B -1 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9B20 HIS B 0 UNP A0A0H3GVQ EXPRESSION TAG SEQRES 1 A 218 MET ALA HIS HIS HIS HIS HIS HIS MET SER LYS PRO THR SEQRES 2 A 218 GLN GLN GLY ILE THR PHE SER LYS ASN ASP VAL GLU ILE SEQRES 3 A 218 ILE ALA ARG GLU THR LEU TYR ARG GLY PHE PHE SER LEU SEQRES 4 A 218 ASP LEU TYR ARG PHE ARG HIS ARG LEU PHE ASN GLY GLY SEQRES 5 A 218 MET SER GLY GLU ILE THR ARG GLU ILE PHE GLU ARG GLY SEQRES 6 A 218 HIS ALA ALA VAL LEU LEU PRO PHE ASP PRO VAL ARG ASP SEQRES 7 A 218 GLU VAL VAL LEU VAL GLU GLN ILE ARG ILE ALA ALA TYR SEQRES 8 A 218 ASP THR SER GLU SER PRO TRP LEU LEU GLU MET VAL ALA SEQRES 9 A 218 GLY MET ILE GLU ALA GLY GLU THR VAL GLU ASP VAL ALA SEQRES 10 A 218 ARG ARG GLU ALA LEU GLU GLU ALA GLY LEU GLU VAL GLY SEQRES 11 A 218 ARG THR LYS PRO ILE LEU SER TYR LEU ALA SER PRO GLY SEQRES 12 A 218 GLY THR SER GLU ARG LEU SER ILE LEU VAL GLY GLU VAL SEQRES 13 A 218 ASP ALA SER THR ALA LYS GLY ILE HIS GLY LEU ALA GLU SEQRES 14 A 218 GLU ASN GLU ASP ILE ARG VAL HIS VAL VAL SER ARG GLU SEQRES 15 A 218 GLN ALA TYR GLN TRP VAL GLU GLU GLY LYS ILE ASP ASN SEQRES 16 A 218 ALA ALA SER VAL ILE ALA LEU GLN TRP LEU GLN LEU HIS SEQRES 17 A 218 TYR HIS ASN LEU ARG ASN GLU TRP THR LYS SEQRES 1 B 218 MET ALA HIS HIS HIS HIS HIS HIS MET SER LYS PRO THR SEQRES 2 B 218 GLN GLN GLY ILE THR PHE SER LYS ASN ASP VAL GLU ILE SEQRES 3 B 218 ILE ALA ARG GLU THR LEU TYR ARG GLY PHE PHE SER LEU SEQRES 4 B 218 ASP LEU TYR ARG PHE ARG HIS ARG LEU PHE ASN GLY GLY SEQRES 5 B 218 MET SER GLY GLU ILE THR ARG GLU ILE PHE GLU ARG GLY SEQRES 6 B 218 HIS ALA ALA VAL LEU LEU PRO PHE ASP PRO VAL ARG ASP SEQRES 7 B 218 GLU VAL VAL LEU VAL GLU GLN ILE ARG ILE ALA ALA TYR SEQRES 8 B 218 ASP THR SER GLU SER PRO TRP LEU LEU GLU MET VAL ALA SEQRES 9 B 218 GLY MET ILE GLU ALA GLY GLU THR VAL GLU ASP VAL ALA SEQRES 10 B 218 ARG ARG GLU ALA LEU GLU GLU ALA GLY LEU GLU VAL GLY SEQRES 11 B 218 ARG THR LYS PRO ILE LEU SER TYR LEU ALA SER PRO GLY SEQRES 12 B 218 GLY THR SER GLU ARG LEU SER ILE LEU VAL GLY GLU VAL SEQRES 13 B 218 ASP ALA SER THR ALA LYS GLY ILE HIS GLY LEU ALA GLU SEQRES 14 B 218 GLU ASN GLU ASP ILE ARG VAL HIS VAL VAL SER ARG GLU SEQRES 15 B 218 GLN ALA TYR GLN TRP VAL GLU GLU GLY LYS ILE ASP ASN SEQRES 16 B 218 ALA ALA SER VAL ILE ALA LEU GLN TRP LEU GLN LEU HIS SEQRES 17 B 218 TYR HIS ASN LEU ARG ASN GLU TRP THR LYS HET AMP A 301 23 HET MG A 302 1 HET AMP B 301 23 HET MG B 302 1 HET MG B 303 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 MG 3(MG 2+) FORMUL 8 HOH *326(H2 O) HELIX 1 AA1 SER A 12 ASN A 14 5 3 HELIX 2 AA2 ILE A 80 SER A 86 5 7 HELIX 3 AA3 THR A 104 GLY A 118 1 15 HELIX 4 AA4 ARG A 173 GLU A 182 1 10 HELIX 5 AA5 ASN A 187 LYS A 210 1 24 HELIX 6 AA6 SER B 12 ASN B 14 5 3 HELIX 7 AA7 ILE B 80 SER B 86 5 7 HELIX 8 AA8 THR B 104 GLY B 118 1 15 HELIX 9 AA9 ASP B 149 ALA B 153 5 5 HELIX 10 AB1 LEU B 159 ASN B 163 5 5 HELIX 11 AB2 ARG B 173 GLU B 182 1 10 HELIX 12 AB3 ASN B 187 THR B 209 1 23 SHEET 1 AA1 3 VAL A 16 ARG A 26 0 SHEET 2 AA1 3 SER A 30 HIS A 38 -1 O LEU A 31 N LEU A 24 SHEET 3 AA1 3 ILE A 49 GLU A 55 -1 O ILE A 53 N ASP A 32 SHEET 1 AA2 5 TRP A 90 GLU A 93 0 SHEET 2 AA2 5 GLU A 71 ILE A 78 -1 N VAL A 75 O GLU A 93 SHEET 3 AA2 5 ALA A 59 ASP A 66 -1 N ASP A 66 O GLU A 71 SHEET 4 AA2 5 ARG A 140 GLU A 147 1 O GLY A 146 N LEU A 63 SHEET 5 AA2 5 THR A 124 LEU A 131 -1 N LEU A 128 O ILE A 143 SHEET 1 AA3 4 VAL A 95 MET A 98 0 SHEET 2 AA3 4 ALA A 59 ASP A 66 -1 N LEU A 62 O VAL A 95 SHEET 3 AA3 4 GLU A 71 ILE A 78 -1 O GLU A 71 N ASP A 66 SHEET 4 AA3 4 ARG A 167 SER A 172 -1 O HIS A 169 N LEU A 74 SHEET 1 AA4 3 VAL B 16 ARG B 26 0 SHEET 2 AA4 3 SER B 30 HIS B 38 -1 O LEU B 33 N GLU B 22 SHEET 3 AA4 3 ILE B 49 GLU B 55 -1 O ILE B 53 N ASP B 32 SHEET 1 AA5 5 TRP B 90 GLU B 93 0 SHEET 2 AA5 5 GLU B 71 ILE B 78 -1 N VAL B 75 O GLU B 93 SHEET 3 AA5 5 HIS B 58 ASP B 66 -1 N ASP B 66 O GLU B 71 SHEET 4 AA5 5 ARG B 140 GLU B 147 1 O GLY B 146 N PHE B 65 SHEET 5 AA5 5 THR B 124 LEU B 131 -1 N LEU B 128 O ILE B 143 SHEET 1 AA6 5 VAL B 95 ILE B 99 0 SHEET 2 AA6 5 HIS B 58 ASP B 66 -1 N HIS B 58 O ILE B 99 SHEET 3 AA6 5 GLU B 71 ILE B 78 -1 O GLU B 71 N ASP B 66 SHEET 4 AA6 5 ILE B 166 SER B 172 -1 O ARG B 167 N GLU B 76 SHEET 5 AA6 5 ILE B 156 HIS B 157 -1 N HIS B 157 O ILE B 166 LINK O ALA A 96 MG MG A 302 1555 1555 2.18 LINK OE2 GLU A 116 MG MG A 302 1555 1555 2.11 LINK MG MG A 302 O HOH A 404 1555 1555 2.25 LINK MG MG A 302 O HOH A 410 1555 1555 2.17 LINK MG MG A 302 O HOH A 456 1555 1555 2.15 LINK MG MG A 302 O HOH A 499 1555 1555 2.26 LINK O ALA B 96 MG MG B 302 1555 1555 2.20 LINK OE1 GLU B 112 MG MG B 303 1555 1555 2.22 LINK OE2 GLU B 116 MG MG B 302 1555 1555 2.20 LINK OE2 GLU B 116 MG MG B 303 1555 1555 2.18 LINK OE2 GLU B 164 MG MG B 303 1555 1555 2.01 LINK MG MG B 302 O HOH B 416 1555 1555 2.21 LINK MG MG B 302 O HOH B 443 1555 1555 2.40 LINK MG MG B 302 O HOH B 459 1555 1555 2.38 LINK MG MG B 302 O HOH B 494 1555 1555 2.46 LINK MG MG B 303 O HOH B 406 1555 1555 1.89 LINK MG MG B 303 O HOH B 459 1555 1555 1.98 LINK MG MG B 303 O HOH B 505 1555 1555 2.34 CRYST1 49.910 68.790 56.663 90.00 115.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020036 0.000000 0.009429 0.00000 SCALE2 0.000000 0.014537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019505 0.00000