HEADER STRUCTURAL PROTEIN/DNA 19-MAR-24 9B3P TITLE THE CRYO-EM STRUCTURE OF THE H2A.Z-H3.3 DOUBLE-VARIANT NUCLEOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.3; COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HISTONE H4; COMPND 7 CHAIN: B, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HISTONE H2A.Z; COMPND 11 CHAIN: C, G; COMPND 12 SYNONYM: H2A/Z; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: HISTONE H2B 1.1; COMPND 16 CHAIN: D, H; COMPND 17 SYNONYM: H2B1.1; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: DNA (128-MER); COMPND 21 CHAIN: I; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 6; COMPND 24 MOLECULE: DNA (128-MER); COMPND 25 CHAIN: J; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3-3A, H3.3A, H3F3, H3F3A, PP781, H3-3B, H3.3B, H3F3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 10 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 11 ORGANISM_TAXID: 8355; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 GENE: H2AZ1, H2AFZ, H2AZ; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 23 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 24 ORGANISM_TAXID: 8355; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 27 MOL_ID: 5; SOURCE 28 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 29 ORGANISM_TAXID: 32630; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 31 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 32 MOL_ID: 6; SOURCE 33 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 34 ORGANISM_TAXID: 32630; SOURCE 35 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE VARIANT, NUCLEOSOME, CHROMATIN, COMPLEX, STRUCTURAL PROTEIN, KEYWDS 2 STRUCTURAL PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR D.TAN,V.SOKOLOVA REVDAT 3 17-JUL-24 9B3P 1 REMARK REVDAT 2 10-JUL-24 9B3P 1 JRNL REVDAT 1 12-JUN-24 9B3P 0 JRNL AUTH H.JUNG,V.SOKOLOVA,G.LEE,V.R.STEVENS,D.TAN JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE JRNL TITL 2 NUCLEOSOME CONTAINING VARIANTS H3.3 AND H2A.Z. JRNL REF EPIGENOMES V. 8 2024 JRNL REFN ISSN 2075-4655 JRNL PMID 38920622 JRNL DOI 10.3390/EPIGENOMES8020021 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, UCSF CHIMERAX, REMARK 3 RELION, RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5B33 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 87.420 REMARK 3 REMARK 3 FITTING PROCEDURE : PHENIX REAL-SPACE REFINEMENT WAS USED. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 205792 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9B3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282564. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NUCLEOSOME CONTAINING HISTONE REMARK 245 VARIANTS H3.3 AND H2A.Z REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.80 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : FREEZING CONDITION: BLOT FORCE REMARK 245 0, BLOT TIME 4.5 SECOND REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : THE COMPLEX CONTAINS XENOPUS REMARK 245 HISTONE H2B AND H4, HUMAN H3.3, AND MOUSE H2A.Z REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 5140 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2250.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : 81000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 SER A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 ALA A 135 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 ARG B 23 REMARK 465 ASP B 24 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 GLY C 2 REMARK 465 GLY C 3 REMARK 465 LYS C 4 REMARK 465 ALA C 5 REMARK 465 GLY C 6 REMARK 465 LYS C 7 REMARK 465 ASP C 8 REMARK 465 SER C 9 REMARK 465 GLY C 10 REMARK 465 LYS C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 THR C 14 REMARK 465 LYS C 15 REMARK 465 HIS C 114 REMARK 465 LYS C 115 REMARK 465 SER C 116 REMARK 465 LEU C 117 REMARK 465 ILE C 118 REMARK 465 GLY C 119 REMARK 465 LYS C 120 REMARK 465 LYS C 121 REMARK 465 GLY C 122 REMARK 465 GLN C 123 REMARK 465 GLN C 124 REMARK 465 LYS C 125 REMARK 465 THR C 126 REMARK 465 VAL C 127 REMARK 465 MET D 0 REMARK 465 PRO D 1 REMARK 465 GLU D 2 REMARK 465 PRO D 3 REMARK 465 ALA D 4 REMARK 465 LYS D 5 REMARK 465 SER D 6 REMARK 465 ALA D 7 REMARK 465 PRO D 8 REMARK 465 ALA D 9 REMARK 465 PRO D 10 REMARK 465 LYS D 11 REMARK 465 LYS D 12 REMARK 465 GLY D 13 REMARK 465 SER D 14 REMARK 465 LYS D 15 REMARK 465 LYS D 16 REMARK 465 ALA D 17 REMARK 465 VAL D 18 REMARK 465 THR D 19 REMARK 465 LYS D 20 REMARK 465 THR D 21 REMARK 465 GLN D 22 REMARK 465 LYS D 23 REMARK 465 LYS D 24 REMARK 465 ASP D 25 REMARK 465 GLY D 26 REMARK 465 LYS D 27 REMARK 465 LYS D 28 REMARK 465 ARG D 29 REMARK 465 ARG D 30 REMARK 465 LYS D 31 REMARK 465 SER D 32 REMARK 465 LYS D 125 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 SER E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 MET G 0 REMARK 465 ALA G 1 REMARK 465 GLY G 2 REMARK 465 GLY G 3 REMARK 465 LYS G 4 REMARK 465 ALA G 5 REMARK 465 GLY G 6 REMARK 465 LYS G 7 REMARK 465 ASP G 8 REMARK 465 SER G 9 REMARK 465 GLY G 10 REMARK 465 LYS G 11 REMARK 465 ALA G 12 REMARK 465 LYS G 13 REMARK 465 THR G 14 REMARK 465 LYS G 15 REMARK 465 ALA G 16 REMARK 465 GLY G 119 REMARK 465 LYS G 120 REMARK 465 LYS G 121 REMARK 465 GLY G 122 REMARK 465 GLN G 123 REMARK 465 GLN G 124 REMARK 465 LYS G 125 REMARK 465 THR G 126 REMARK 465 VAL G 127 REMARK 465 MET H 0 REMARK 465 PRO H 1 REMARK 465 GLU H 2 REMARK 465 PRO H 3 REMARK 465 ALA H 4 REMARK 465 LYS H 5 REMARK 465 SER H 6 REMARK 465 ALA H 7 REMARK 465 PRO H 8 REMARK 465 ALA H 9 REMARK 465 PRO H 10 REMARK 465 LYS H 11 REMARK 465 LYS H 12 REMARK 465 GLY H 13 REMARK 465 SER H 14 REMARK 465 LYS H 15 REMARK 465 LYS H 16 REMARK 465 ALA H 17 REMARK 465 VAL H 18 REMARK 465 THR H 19 REMARK 465 LYS H 20 REMARK 465 THR H 21 REMARK 465 GLN H 22 REMARK 465 LYS H 23 REMARK 465 LYS H 24 REMARK 465 ASP H 25 REMARK 465 GLY H 26 REMARK 465 LYS H 27 REMARK 465 LYS H 28 REMARK 465 ARG H 29 REMARK 465 ARG H 30 REMARK 465 LYS H 31 REMARK 465 SER H 32 REMARK 465 LYS H 125 REMARK 465 DA I -73 REMARK 465 DC I -72 REMARK 465 DA I -71 REMARK 465 DG I -70 REMARK 465 DG I -69 REMARK 465 DA I -68 REMARK 465 DC I 61 REMARK 465 DG I 62 REMARK 465 DG I 63 REMARK 465 DG I 64 REMARK 465 DA I 65 REMARK 465 DT I 66 REMARK 465 DT I 67 REMARK 465 DC I 68 REMARK 465 DT I 69 REMARK 465 DC I 70 REMARK 465 DC I 71 REMARK 465 DA I 72 REMARK 465 DG I 73 REMARK 465 DA J -81 REMARK 465 DT J -80 REMARK 465 DC J -79 REMARK 465 DC J -78 REMARK 465 DC J -77 REMARK 465 DG J -76 REMARK 465 DC J -75 REMARK 465 DC J -74 REMARK 465 DC J -73 REMARK 465 DT J -72 REMARK 465 DG J -71 REMARK 465 DG J -70 REMARK 465 DA J -69 REMARK 465 DG J -68 REMARK 465 DA J -67 REMARK 465 DA J -66 REMARK 465 DT J -65 REMARK 465 DC J -64 REMARK 465 DC J -63 REMARK 465 DC J -62 REMARK 465 DG J -61 REMARK 465 DT J 68 REMARK 465 DC J 69 REMARK 465 DC J 70 REMARK 465 DT J 71 REMARK 465 DG J 72 REMARK 465 DT J 73 REMARK 465 DG J 74 REMARK 465 DC J 75 REMARK 465 DA J 76 REMARK 465 DT J 77 REMARK 465 DG J 78 REMARK 465 DA J 79 REMARK 465 DC J 80 REMARK 465 DT J 81 REMARK 465 DA J 82 REMARK 465 DG J 83 REMARK 465 DA J 84 REMARK 465 DT J 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 43 85.13 -64.75 REMARK 500 PHE B 100 47.48 -142.71 REMARK 500 ARG C 39 -79.36 -98.69 REMARK 500 THR C 41 -158.29 -127.42 REMARK 500 SER C 42 -84.93 -69.02 REMARK 500 LYS C 77 41.80 37.14 REMARK 500 ALA C 102 -152.19 -104.11 REMARK 500 PRO C 111 93.20 -65.84 REMARK 500 TYR D 37 46.60 -107.55 REMARK 500 THR D 90 -158.37 -106.99 REMARK 500 GLU D 105 -78.62 56.23 REMARK 500 PRO E 43 84.80 -66.00 REMARK 500 VAL E 117 -53.96 -124.23 REMARK 500 LYS F 44 -78.18 -81.25 REMARK 500 ARG F 95 78.85 -114.01 REMARK 500 ARG G 39 -97.80 -113.76 REMARK 500 ALA G 102 -148.48 -97.61 REMARK 500 PRO G 111 99.35 -67.28 REMARK 500 ASP H 51 35.68 -91.85 REMARK 500 SER H 87 -54.48 -153.55 REMARK 500 THR H 90 -152.55 -109.39 REMARK 500 GLU H 105 -82.48 56.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-44148 RELATED DB: EMDB REMARK 900 STRUCTURE OF HETEROCHROMATIN PROTEIN 1 (HP1) ALPHA IN COMPLEX WITH REMARK 900 AN H2A.Z NUCLEOSOME DBREF 9B3P A 0 135 UNP P84243 H33_HUMAN 1 136 DBREF 9B3P B 0 102 UNP P62799 H4_XENLA 1 103 DBREF 9B3P C 0 127 UNP P0C0S6 H2AZ_MOUSE 1 128 DBREF 9B3P D 0 125 UNP P02281 H2B11_XENLA 1 126 DBREF 9B3P E 0 135 UNP P84243 H33_HUMAN 1 136 DBREF 9B3P F 0 102 UNP P62799 H4_XENLA 1 103 DBREF 9B3P G 0 127 UNP P0C0S6 H2AZ_MOUSE 1 128 DBREF 9B3P H 0 125 UNP P02281 H2B11_XENLA 1 126 DBREF 9B3P I -73 73 PDB 9B3P 9B3P -73 73 DBREF 9B3P J -81 85 PDB 9B3P 9B3P -81 85 SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO SER THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER ALA ALA ILE GLY SEQRES 8 A 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 128 MET ALA GLY GLY LYS ALA GLY LYS ASP SER GLY LYS ALA SEQRES 2 C 128 LYS THR LYS ALA VAL SER ARG SER GLN ARG ALA GLY LEU SEQRES 3 C 128 GLN PHE PRO VAL GLY ARG ILE HIS ARG HIS LEU LYS SER SEQRES 4 C 128 ARG THR THR SER HIS GLY ARG VAL GLY ALA THR ALA ALA SEQRES 5 C 128 VAL TYR SER ALA ALA ILE LEU GLU TYR LEU THR ALA GLU SEQRES 6 C 128 VAL LEU GLU LEU ALA GLY ASN ALA SER LYS ASP LEU LYS SEQRES 7 C 128 VAL LYS ARG ILE THR PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 8 C 128 ARG GLY ASP GLU GLU LEU ASP SER LEU ILE LYS ALA THR SEQRES 9 C 128 ILE ALA GLY GLY GLY VAL ILE PRO HIS ILE HIS LYS SER SEQRES 10 C 128 LEU ILE GLY LYS LYS GLY GLN GLN LYS THR VAL SEQRES 1 D 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 D 126 GLY SER LYS LYS ALA VAL THR LYS THR GLN LYS LYS ASP SEQRES 3 D 126 GLY LYS LYS ARG ARG LYS SER ARG LYS GLU SER TYR ALA SEQRES 4 D 126 ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 D 126 THR GLY ILE SER SER LYS ALA MET SER ILE MET ASN SER SEQRES 6 D 126 PHE VAL ASN ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 D 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 D 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 D 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 D 126 ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO SER THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER ALA ALA ILE GLY SEQRES 8 E 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 128 MET ALA GLY GLY LYS ALA GLY LYS ASP SER GLY LYS ALA SEQRES 2 G 128 LYS THR LYS ALA VAL SER ARG SER GLN ARG ALA GLY LEU SEQRES 3 G 128 GLN PHE PRO VAL GLY ARG ILE HIS ARG HIS LEU LYS SER SEQRES 4 G 128 ARG THR THR SER HIS GLY ARG VAL GLY ALA THR ALA ALA SEQRES 5 G 128 VAL TYR SER ALA ALA ILE LEU GLU TYR LEU THR ALA GLU SEQRES 6 G 128 VAL LEU GLU LEU ALA GLY ASN ALA SER LYS ASP LEU LYS SEQRES 7 G 128 VAL LYS ARG ILE THR PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 8 G 128 ARG GLY ASP GLU GLU LEU ASP SER LEU ILE LYS ALA THR SEQRES 9 G 128 ILE ALA GLY GLY GLY VAL ILE PRO HIS ILE HIS LYS SER SEQRES 10 G 128 LEU ILE GLY LYS LYS GLY GLN GLN LYS THR VAL SEQRES 1 H 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 H 126 GLY SER LYS LYS ALA VAL THR LYS THR GLN LYS LYS ASP SEQRES 3 H 126 GLY LYS LYS ARG ARG LYS SER ARG LYS GLU SER TYR ALA SEQRES 4 H 126 ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 H 126 THR GLY ILE SER SER LYS ALA MET SER ILE MET ASN SER SEQRES 6 H 126 PHE VAL ASN ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 H 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 H 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 H 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 H 126 ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 I 147 DA DC DA DG DG DA DT DG DT DA DT DA DT SEQRES 2 I 147 DA DT DC DT DG DA DC DA DC DG DT DG DC SEQRES 3 I 147 DC DT DG DG DA DG DA DC DT DA DG DG DG SEQRES 4 I 147 DA DG DT DA DA DT DC DC DC DC DT DT DG SEQRES 5 I 147 DG DC DG DG DT DT DA DA DA DA DC DG DC SEQRES 6 I 147 DG DG DG DG DG DA DC DA DG DC DG DC DG SEQRES 7 I 147 DT DA DC DG DT DG DC DG DT DT DT DA DA SEQRES 8 I 147 DG DC DG DG DT DG DC DT DA DG DA DG DC SEQRES 9 I 147 DT DG DT DC DT DA DC DG DA DC DC DA DA SEQRES 10 I 147 DT DT DG DA DG DC DG DG DC DC DT DC DG SEQRES 11 I 147 DG DC DA DC DC DG DG DG DA DT DT DC DT SEQRES 12 I 147 DC DC DA DG SEQRES 1 J 167 DA DT DC DC DC DG DC DC DC DT DG DG DA SEQRES 2 J 167 DG DA DA DT DC DC DC DG DG DT DG DC DC SEQRES 3 J 167 DG DA DG DG DC DC DG DC DT DC DA DA DT SEQRES 4 J 167 DT DG DG DT DC DG DT DA DG DA DC DA DG SEQRES 5 J 167 DC DT DC DT DA DG DC DA DC DC DG DC DT SEQRES 6 J 167 DT DA DA DA DC DG DC DA DC DG DT DA DC SEQRES 7 J 167 DG DC DG DC DT DG DT DC DC DC DC DC DG SEQRES 8 J 167 DC DG DT DT DT DT DA DA DC DC DG DC DC SEQRES 9 J 167 DA DA DG DG DG DG DA DT DT DA DC DT DC SEQRES 10 J 167 DC DC DT DA DG DT DC DT DC DC DA DG DG SEQRES 11 J 167 DC DA DC DG DT DG DT DC DA DG DA DT DA SEQRES 12 J 167 DT DA DT DA DC DA DT DC DC DT DG DT DG SEQRES 13 J 167 DC DA DT DG DA DC DT DA DG DA DT HELIX 1 AA1 GLY A 44 GLU A 50 1 7 HELIX 2 AA2 GLU A 50 GLN A 55 1 6 HELIX 3 AA3 LYS A 64 LYS A 79 1 16 HELIX 4 AA4 GLN A 85 ALA A 114 1 30 HELIX 5 AA5 PRO A 121 GLY A 132 1 12 HELIX 6 AA6 THR B 30 GLY B 42 1 13 HELIX 7 AA7 LEU B 49 HIS B 75 1 27 HELIX 8 AA8 ALA B 83 GLY B 94 1 12 HELIX 9 AA9 SER C 18 GLY C 24 1 7 HELIX 10 AB1 PRO C 28 THR C 40 1 13 HELIX 11 AB2 GLY C 47 LYS C 74 1 28 HELIX 12 AB3 THR C 82 GLY C 92 1 11 HELIX 13 AB4 GLU C 94 ILE C 100 1 7 HELIX 14 AB5 TYR D 40 HIS D 49 1 10 HELIX 15 AB6 SER D 55 TYR D 83 1 29 HELIX 16 AB7 THR D 90 LEU D 102 1 13 HELIX 17 AB8 GLU D 105 SER D 123 1 19 HELIX 18 AB9 GLU E 50 GLN E 55 1 6 HELIX 19 AC1 LYS E 64 LYS E 79 1 16 HELIX 20 AC2 GLN E 85 ALA E 114 1 30 HELIX 21 AC3 MET E 120 GLY E 132 1 13 HELIX 22 AC4 ASP F 24 ILE F 29 5 6 HELIX 23 AC5 THR F 30 ARG F 39 1 10 HELIX 24 AC6 LEU F 49 HIS F 75 1 27 HELIX 25 AC7 ALA F 83 GLY F 94 1 12 HELIX 26 AC8 SER G 18 GLY G 24 1 7 HELIX 27 AC9 PRO G 28 LYS G 37 1 10 HELIX 28 AD1 GLY G 47 SER G 73 1 27 HELIX 29 AD2 THR G 82 GLY G 92 1 11 HELIX 30 AD3 HIS G 114 ILE G 118 5 5 HELIX 31 AD4 TYR H 40 HIS H 49 1 10 HELIX 32 AD5 SER H 55 ASN H 84 1 30 HELIX 33 AD6 THR H 90 LEU H 102 1 13 HELIX 34 AD7 GLU H 105 SER H 123 1 19 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 ARG C 45 VAL C 46 0 SHEET 2 AA2 2 THR D 88 ILE D 89 1 O ILE D 89 N ARG C 45 SHEET 1 AA3 2 ARG E 83 PHE E 84 0 SHEET 2 AA3 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA4 2 ARG G 45 VAL G 46 0 SHEET 2 AA4 2 THR H 88 ILE H 89 1 O ILE H 89 N ARG G 45 CISPEP 1 THR C 40 THR C 41 0 -0.18 CISPEP 2 THR G 40 THR G 41 0 0.14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000