HEADER SUGAR BINDING PROTEIN 21-MAR-24 9B4W TITLE 4F-TRP LABELED OSCILLATORIA AGARDHII AGGLUTININ (OAA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSCILLATORIA AGARDHII; SOURCE 3 ORGANISM_TAXID: 1160; SOURCE 4 GENE: OAA, NO365_04266; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-26B(+) KEYWDS BETA BARREL, CARBOHYDRATE BINDING, SUGAR BINDING PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR B.R.RUNGE,R.R.ZADOROZHNYI,C.M.QUINN,R.W.RUSSELL,M.LU,S.ANTOLINEZ, AUTHOR 2 J.STRUPPE,C.D.SCHWIETERS,I.L.BYEON,J.HADDEN-PERILLA,A.M.GRONENBORN, AUTHOR 3 T.POLENOVA REVDAT 1 06-NOV-24 9B4W 0 JRNL AUTH B.R.RUNGE,R.ZADOROZHNYI,C.M.QUINN,R.W.RUSSELL,M.LU, JRNL AUTH 2 S.ANTOLINEZ,J.STRUPPE,C.D.SCHWIETERS,I.L.BYEON, JRNL AUTH 3 J.A.HADDEN-PERILLA,A.M.GRONENBORN,T.POLENOVA JRNL TITL INTEGRATING 19 F DISTANCE RESTRAINTS FOR ACCURATE PROTEIN JRNL TITL 2 STRUCTURE DETERMINATION BY MAGIC ANGLE SPINNING NMR JRNL TITL 3 SPECTROSCOPY. JRNL REF J.AM.CHEM.SOC. 2024 JRNL REFN ESSN 1520-5126 JRNL PMID 39440810 JRNL DOI 10.1021/JACS.4C11373 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9B4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1000282672. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 2.3 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.2 MM NAH2PO4, 0.8 MM K2HPO4, REMARK 210 0.2 MM LI2SO4, 0.1 MM CAPS, 30 REMARK 210 MG/ML [U-100% 19F]-4F-TRP, U-100% REMARK 210 13C, U-100% 15N] OAA, H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D CORD 25 MS; 2D CORD 50 MS; 2D REMARK 210 CORD 100 MS; 2D CORD 250 MS; 2D REMARK 210 CORD 500 MS; 2D NCACX 50 MS; 2D REMARK 210 NCOCX 25 MS; 3D NCACX 50 MS; 3D REMARK 210 NCOCX 25 MS; 2D HCH HETCOR; 2D REMARK 210 HNH HETCOR; 2D 19F-19F RFDR; 2D REMARK 210 HCF HETCOR; 3D HCHF HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, CCPNMR REMARK 210 ANALYSIS, NMRFAM-SPARKY, X-PLOR REMARK 210 NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 28 144.51 -170.19 REMARK 500 1 VAL A 34 -70.26 64.91 REMARK 500 1 THR A 46 99.75 176.25 REMARK 500 1 LEU A 92 -162.15 -103.77 REMARK 500 1 ASN A 97 18.58 59.17 REMARK 500 1 VAL A 101 -68.58 72.15 REMARK 500 1 GLN A 112 -168.35 -61.52 REMARK 500 2 VAL A 34 -52.15 69.70 REMARK 500 2 THR A 46 98.27 175.94 REMARK 500 2 LEU A 92 -165.94 -102.89 REMARK 500 2 ASN A 97 17.80 57.83 REMARK 500 2 VAL A 101 -64.32 67.57 REMARK 500 2 GLN A 112 -168.49 -62.53 REMARK 500 3 VAL A 34 -75.59 60.89 REMARK 500 3 GLN A 45 67.38 -101.84 REMARK 500 3 THR A 46 100.48 176.60 REMARK 500 3 VAL A 101 -86.16 58.68 REMARK 500 3 GLN A 112 -168.26 -61.72 REMARK 500 4 VAL A 34 -73.30 62.94 REMARK 500 4 THR A 46 97.99 175.68 REMARK 500 4 LEU A 92 -165.39 -100.40 REMARK 500 4 VAL A 101 -67.48 78.50 REMARK 500 4 GLN A 112 -167.85 -61.83 REMARK 500 5 VAL A 34 -66.13 65.39 REMARK 500 5 THR A 46 97.77 175.45 REMARK 500 5 LEU A 66 -60.30 -95.12 REMARK 500 5 ASN A 68 -172.64 -66.00 REMARK 500 5 LEU A 92 -165.41 -101.14 REMARK 500 5 VAL A 101 -73.27 72.99 REMARK 500 5 GLN A 112 -168.66 -61.61 REMARK 500 6 GLU A 19 161.43 -48.66 REMARK 500 6 VAL A 34 -84.43 52.81 REMARK 500 6 THR A 46 98.32 177.97 REMARK 500 6 ASN A 48 40.86 -106.31 REMARK 500 6 LEU A 92 -167.43 -103.38 REMARK 500 6 ASN A 97 17.44 57.67 REMARK 500 6 VAL A 101 -69.69 65.14 REMARK 500 6 GLN A 112 -169.42 -62.39 REMARK 500 7 VAL A 34 -52.39 69.79 REMARK 500 7 THR A 46 97.97 175.17 REMARK 500 7 LEU A 92 -164.50 -107.27 REMARK 500 7 ASN A 97 19.60 58.72 REMARK 500 7 VAL A 101 -83.73 60.90 REMARK 500 7 GLN A 112 -168.44 -62.76 REMARK 500 8 ARG A 28 113.94 -166.52 REMARK 500 8 VAL A 34 -69.96 64.21 REMARK 500 8 THR A 46 99.06 175.47 REMARK 500 8 LEU A 92 -158.03 -131.21 REMARK 500 8 VAL A 101 -80.56 60.28 REMARK 500 8 ASP A 110 49.54 71.30 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31153 RELATED DB: BMRB REMARK 900 4F-TRP LABELED OSCILLATORIA AGARDHII AGGLUTININ (OAA) DBREF 9B4W A 1 133 UNP C0STD7 C0STD7_PLAAG 1 133 SEQRES 1 A 133 MET ALA LEU TYR ASN VAL GLU ASN GLN 4FW GLY GLY SER SEQRES 2 A 133 SER ALA PRO 4FW ASN GLU GLY GLY GLN 4FW GLU ILE GLY SEQRES 3 A 133 SER ARG SER ASP GLN ASN VAL VAL ALA ILE ASN VAL GLU SEQRES 4 A 133 SER GLY ASP ASP GLY GLN THR LEU ASN GLY THR MET THR SEQRES 5 A 133 TYR ALA GLY GLU GLY PRO ILE GLY PHE ARG ALA THR LEU SEQRES 6 A 133 LEU GLY ASN ASN SER TYR GLU VAL GLU ASN GLN 4FW GLY SEQRES 7 A 133 GLY ASP SER ALA PRO 4FW HIS SER GLY GLY ASN 4FW ILE SEQRES 8 A 133 LEU GLY SER ARG GLU ASN GLN ASN VAL VAL ALA ILE ASN SEQRES 9 A 133 VAL GLU SER GLY ASP ASP GLY GLN THR LEU ASN GLY THR SEQRES 10 A 133 MET THR TYR ALA GLY GLU GLY PRO ILE GLY PHE LYS GLY SEQRES 11 A 133 THR LEU THR MODRES 9B4W 4FW A 10 TRP MODIFIED RESIDUE MODRES 9B4W 4FW A 17 TRP MODIFIED RESIDUE MODRES 9B4W 4FW A 23 TRP MODIFIED RESIDUE MODRES 9B4W 4FW A 77 TRP MODIFIED RESIDUE MODRES 9B4W 4FW A 84 TRP MODIFIED RESIDUE MODRES 9B4W 4FW A 90 TRP MODIFIED RESIDUE HET 4FW A 10 24 HET 4FW A 17 24 HET 4FW A 23 24 HET 4FW A 77 24 HET 4FW A 84 24 HET 4FW A 90 24 HETNAM 4FW 4-FLUOROTRYPTOPHANE FORMUL 1 4FW 6(C11 H11 F N2 O2) SHEET 1 AA112 4FW A 84 HIS A 85 0 SHEET 2 AA112 SER A 70 GLN A 76 -1 N ASN A 75 O HIS A 85 SHEET 3 AA112 4FW A 90 ILE A 91 -1 O 4FW A 90 N TYR A 71 SHEET 4 AA112 ASN A 18 GLU A 24 -1 N GLU A 24 O ILE A 91 SHEET 5 AA112 LEU A 3 GLN A 9 -1 N VAL A 6 O GLY A 21 SHEET 6 AA112 PRO A 125 LEU A 132 -1 O THR A 131 N ASN A 5 SHEET 7 AA112 THR A 117 THR A 119 -1 N MET A 118 O ILE A 126 SHEET 8 AA112 ALA A 102 GLU A 106 -1 N ALA A 102 O THR A 119 SHEET 9 AA112 ALA A 35 VAL A 38 -1 N ILE A 36 O VAL A 105 SHEET 10 AA112 THR A 50 THR A 52 -1 O THR A 50 N ASN A 37 SHEET 11 AA112 PRO A 58 LEU A 65 -1 O ILE A 59 N MET A 51 SHEET 12 AA112 SER A 70 GLN A 76 -1 O GLN A 76 N GLY A 60 LINK C GLN A 9 N 4FW A 10 1555 1555 1.33 LINK C 4FW A 10 N GLY A 11 1555 1555 1.33 LINK C PRO A 16 N 4FW A 17 1555 1555 1.33 LINK C 4FW A 17 N ASN A 18 1555 1555 1.33 LINK C GLN A 22 N 4FW A 23 1555 1555 1.32 LINK C 4FW A 23 N GLU A 24 1555 1555 1.32 LINK C GLN A 76 N 4FW A 77 1555 1555 1.33 LINK C 4FW A 77 N GLY A 78 1555 1555 1.33 LINK C PRO A 83 N 4FW A 84 1555 1555 1.33 LINK C 4FW A 84 N HIS A 85 1555 1555 1.33 LINK C ASN A 89 N 4FW A 90 1555 1555 1.34 LINK C 4FW A 90 N ILE A 91 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1