HEADER TRANSCRIPTION/DNA 01-APR-24 9B8U TITLE CRYSTAL STRUCTURE OF CRX-RET4 OLIGONUCLEOTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONE-ROD HOMEOBOX PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(P*CP*AP*GP*GP*AP*GP*CP*TP*TP*AP*GP*GP*AP*GP*GP*GP*GP*GP*AP*G)-3'); COMPND 8 CHAIN: E, G; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'- COMPND 12 D(P*CP*TP*CP*CP*CP*CP*CP*TP*CP*CP*TP*AP*AP*GP*CP*TP*CP*CP*TP*G)-3'); COMPND 13 CHAIN: F, H; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CRX, CORD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS HOMEODOMAIN, TRANSCRIPTION FACTOR, VISION, RHODOPSIN PROMOTER, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.SRIVASTAVA,N.O.ARTEMYEV REVDAT 2 14-AUG-24 9B8U 1 JRNL REVDAT 1 31-JUL-24 9B8U 0 JRNL AUTH D.SRIVASTAVA,P.GOWRIBIDANUR-CHINNASWAMY,P.GAUR,M.SPIES, JRNL AUTH 2 A.SWAROOP,N.O.ARTEMYEV JRNL TITL MOLECULAR BASIS OF CRX/DNA RECOGNITION AND STOICHIOMETRY AT JRNL TITL 2 THE RET4 RESPONSE ELEMENT. JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 39084215 JRNL DOI 10.1016/J.STR.2024.07.004 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.6700 - 6.4500 0.99 1283 146 0.2500 0.2420 REMARK 3 2 6.4400 - 5.1200 0.99 1245 135 0.2710 0.3040 REMARK 3 3 5.1200 - 4.4700 1.00 1274 144 0.2444 0.2524 REMARK 3 4 4.4700 - 4.0600 0.98 1231 141 0.2267 0.2838 REMARK 3 5 4.0600 - 3.7700 0.99 1258 138 0.2378 0.3110 REMARK 3 6 3.7700 - 3.5500 1.00 1248 131 0.2463 0.3055 REMARK 3 7 3.5500 - 3.3700 1.00 1249 137 0.2285 0.2871 REMARK 3 8 3.3700 - 3.2200 1.00 1239 141 0.2287 0.3332 REMARK 3 9 3.2200 - 3.1000 1.00 1254 147 0.2743 0.3447 REMARK 3 10 3.1000 - 2.9900 1.00 1238 137 0.3011 0.3286 REMARK 3 11 2.9900 - 2.9000 0.98 1214 126 0.3082 0.4057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.465 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.095 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4048 REMARK 3 ANGLE : 0.563 5786 REMARK 3 CHIRALITY : 0.031 630 REMARK 3 PLANARITY : 0.004 467 REMARK 3 DIHEDRAL : 22.741 1731 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 34.4242 -35.6417 -23.7659 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.4296 REMARK 3 T33: 0.4552 T12: -0.0075 REMARK 3 T13: 0.0063 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.4282 L22: 0.0279 REMARK 3 L33: 0.5944 L12: -0.5078 REMARK 3 L13: -0.4275 L23: 0.8074 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.0513 S13: -0.0720 REMARK 3 S21: -0.0330 S22: -0.0796 S23: 0.0109 REMARK 3 S31: -0.0762 S32: -0.0784 S33: -0.0014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9B8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000282824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.O-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15350 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 57.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.26500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.97600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80 MM KCL, 40 MM CACODYLATE PH 6.0, REMARK 280 55% MPD, 12 MM SPERMINE TETRAHYDROCHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.79850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.74700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.79850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.74700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 MET A 29 REMARK 465 ASP A 30 REMARK 465 PRO A 31 REMARK 465 TYR A 32 REMARK 465 PRO A 33 REMARK 465 SER A 34 REMARK 465 ALA A 35 REMARK 465 PRO A 36 REMARK 465 ARG A 37 REMARK 465 LYS A 38 REMARK 465 GLN A 39 REMARK 465 ARG A 40 REMARK 465 GLN A 100 REMARK 465 GLN A 101 REMARK 465 LYS A 102 REMARK 465 GLN A 103 REMARK 465 GLN A 104 REMARK 465 GLN A 105 REMARK 465 GLN A 106 REMARK 465 PRO A 107 REMARK 465 GLY B 27 REMARK 465 ALA B 28 REMARK 465 MET B 29 REMARK 465 ASP B 30 REMARK 465 PRO B 31 REMARK 465 TYR B 32 REMARK 465 PRO B 33 REMARK 465 SER B 34 REMARK 465 ALA B 35 REMARK 465 PRO B 36 REMARK 465 ARG B 37 REMARK 465 LYS B 38 REMARK 465 GLN B 105 REMARK 465 GLN B 106 REMARK 465 PRO B 107 REMARK 465 GLY C 27 REMARK 465 ALA C 28 REMARK 465 MET C 29 REMARK 465 ASP C 30 REMARK 465 PRO C 31 REMARK 465 TYR C 32 REMARK 465 PRO C 33 REMARK 465 SER C 34 REMARK 465 ALA C 35 REMARK 465 PRO C 36 REMARK 465 ARG C 37 REMARK 465 LYS C 38 REMARK 465 GLN C 39 REMARK 465 GLN C 105 REMARK 465 GLN C 106 REMARK 465 PRO C 107 REMARK 465 GLY D 27 REMARK 465 ALA D 28 REMARK 465 MET D 29 REMARK 465 ASP D 30 REMARK 465 PRO D 31 REMARK 465 TYR D 32 REMARK 465 PRO D 33 REMARK 465 SER D 34 REMARK 465 ALA D 35 REMARK 465 PRO D 36 REMARK 465 ARG D 37 REMARK 465 LYS D 38 REMARK 465 GLN D 39 REMARK 465 ARG D 40 REMARK 465 GLN D 101 REMARK 465 LYS D 102 REMARK 465 GLN D 103 REMARK 465 GLN D 104 REMARK 465 GLN D 105 REMARK 465 GLN D 106 REMARK 465 PRO D 107 REMARK 465 DC E 18 REMARK 465 DC F 0 REMARK 465 DC G 18 REMARK 465 DC H 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 39 CG CD OE1 NE2 REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 41 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 42 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 60 CG CD CE NZ REMARK 480 TYR A 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS A 93 CG CD CE NZ REMARK 480 ARG A 95 NE CZ NH1 NH2 REMARK 480 LYS B 60 CG CD CE NZ REMARK 480 LYS B 93 CD CE NZ REMARK 480 LYS B 102 CD CE NZ REMARK 480 GLN C 99 CG CD OE1 NE2 REMARK 480 LYS C 102 CG CD CE NZ REMARK 480 ARG D 48 CG CD NE CZ NH1 NH2 REMARK 480 GLU D 52 CG CD OE1 OE2 REMARK 480 ARG D 98 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 32 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 43 11.74 56.91 REMARK 500 ARG C 41 -116.27 56.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 203 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH G 210 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH H 204 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH H 205 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH H 206 DISTANCE = 7.19 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K F 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CAC E 101 O1 REMARK 620 2 DC F 6 O2 119.3 REMARK 620 N 1 DBREF 9B8U A 31 107 UNP O43186 CRX_HUMAN 31 107 DBREF 9B8U B 31 107 UNP O43186 CRX_HUMAN 31 107 DBREF 9B8U C 31 107 UNP O43186 CRX_HUMAN 31 107 DBREF 9B8U D 31 107 UNP O43186 CRX_HUMAN 31 107 DBREF 9B8U E 18 38 PDB 9B8U 9B8U 18 38 DBREF 9B8U F 0 20 PDB 9B8U 9B8U 0 20 DBREF 9B8U G 18 38 PDB 9B8U 9B8U 18 38 DBREF 9B8U H 0 20 PDB 9B8U 9B8U 0 20 SEQADV 9B8U GLY A 27 UNP O43186 EXPRESSION TAG SEQADV 9B8U ALA A 28 UNP O43186 EXPRESSION TAG SEQADV 9B8U MET A 29 UNP O43186 EXPRESSION TAG SEQADV 9B8U ASP A 30 UNP O43186 EXPRESSION TAG SEQADV 9B8U GLY B 27 UNP O43186 EXPRESSION TAG SEQADV 9B8U ALA B 28 UNP O43186 EXPRESSION TAG SEQADV 9B8U MET B 29 UNP O43186 EXPRESSION TAG SEQADV 9B8U ASP B 30 UNP O43186 EXPRESSION TAG SEQADV 9B8U GLY C 27 UNP O43186 EXPRESSION TAG SEQADV 9B8U ALA C 28 UNP O43186 EXPRESSION TAG SEQADV 9B8U MET C 29 UNP O43186 EXPRESSION TAG SEQADV 9B8U ASP C 30 UNP O43186 EXPRESSION TAG SEQADV 9B8U GLY D 27 UNP O43186 EXPRESSION TAG SEQADV 9B8U ALA D 28 UNP O43186 EXPRESSION TAG SEQADV 9B8U MET D 29 UNP O43186 EXPRESSION TAG SEQADV 9B8U ASP D 30 UNP O43186 EXPRESSION TAG SEQRES 1 A 81 GLY ALA MET ASP PRO TYR PRO SER ALA PRO ARG LYS GLN SEQRES 2 A 81 ARG ARG GLU ARG THR THR PHE THR ARG SER GLN LEU GLU SEQRES 3 A 81 GLU LEU GLU ALA LEU PHE ALA LYS THR GLN TYR PRO ASP SEQRES 4 A 81 VAL TYR ALA ARG GLU GLU VAL ALA LEU LYS ILE ASN LEU SEQRES 5 A 81 PRO GLU SER ARG VAL GLN VAL TRP PHE LYS ASN ARG ARG SEQRES 6 A 81 ALA LYS CYS ARG GLN GLN ARG GLN GLN GLN LYS GLN GLN SEQRES 7 A 81 GLN GLN PRO SEQRES 1 B 81 GLY ALA MET ASP PRO TYR PRO SER ALA PRO ARG LYS GLN SEQRES 2 B 81 ARG ARG GLU ARG THR THR PHE THR ARG SER GLN LEU GLU SEQRES 3 B 81 GLU LEU GLU ALA LEU PHE ALA LYS THR GLN TYR PRO ASP SEQRES 4 B 81 VAL TYR ALA ARG GLU GLU VAL ALA LEU LYS ILE ASN LEU SEQRES 5 B 81 PRO GLU SER ARG VAL GLN VAL TRP PHE LYS ASN ARG ARG SEQRES 6 B 81 ALA LYS CYS ARG GLN GLN ARG GLN GLN GLN LYS GLN GLN SEQRES 7 B 81 GLN GLN PRO SEQRES 1 C 81 GLY ALA MET ASP PRO TYR PRO SER ALA PRO ARG LYS GLN SEQRES 2 C 81 ARG ARG GLU ARG THR THR PHE THR ARG SER GLN LEU GLU SEQRES 3 C 81 GLU LEU GLU ALA LEU PHE ALA LYS THR GLN TYR PRO ASP SEQRES 4 C 81 VAL TYR ALA ARG GLU GLU VAL ALA LEU LYS ILE ASN LEU SEQRES 5 C 81 PRO GLU SER ARG VAL GLN VAL TRP PHE LYS ASN ARG ARG SEQRES 6 C 81 ALA LYS CYS ARG GLN GLN ARG GLN GLN GLN LYS GLN GLN SEQRES 7 C 81 GLN GLN PRO SEQRES 1 D 81 GLY ALA MET ASP PRO TYR PRO SER ALA PRO ARG LYS GLN SEQRES 2 D 81 ARG ARG GLU ARG THR THR PHE THR ARG SER GLN LEU GLU SEQRES 3 D 81 GLU LEU GLU ALA LEU PHE ALA LYS THR GLN TYR PRO ASP SEQRES 4 D 81 VAL TYR ALA ARG GLU GLU VAL ALA LEU LYS ILE ASN LEU SEQRES 5 D 81 PRO GLU SER ARG VAL GLN VAL TRP PHE LYS ASN ARG ARG SEQRES 6 D 81 ALA LYS CYS ARG GLN GLN ARG GLN GLN GLN LYS GLN GLN SEQRES 7 D 81 GLN GLN PRO SEQRES 1 E 21 DC DC DA DG DG DA DG DC DT DT DA DG DG SEQRES 2 E 21 DA DG DG DG DG DG DA DG SEQRES 1 F 21 DC DC DT DC DC DC DC DC DT DC DC DT DA SEQRES 2 F 21 DA DG DC DT DC DC DT DG SEQRES 1 G 21 DC DC DA DG DG DA DG DC DT DT DA DG DG SEQRES 2 G 21 DA DG DG DG DG DG DA DG SEQRES 1 H 21 DC DC DT DC DC DC DC DC DT DC DC DT DA SEQRES 2 H 21 DA DG DC DT DC DC DT DG HET CAC A 201 5 HET MPD A 202 8 HET GOL B 201 6 HET CAC E 101 5 HET K E 102 1 HET GOL F 101 6 HET K F 102 1 HET NA G 101 1 HET NA G 102 1 HET GOL H 101 6 HET GOL H 102 6 HET K H 103 1 HETNAM CAC CACODYLATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETSYN CAC DIMETHYLARSINATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 9 CAC 2(C2 H6 AS O2 1-) FORMUL 10 MPD C6 H14 O2 FORMUL 11 GOL 4(C3 H8 O3) FORMUL 13 K 3(K 1+) FORMUL 16 NA 2(NA 1+) FORMUL 21 HOH *55(H2 O) HELIX 1 AA1 THR A 47 THR A 61 1 15 HELIX 2 AA2 ASP A 65 ILE A 76 1 12 HELIX 3 AA3 PRO A 79 ARG A 98 1 20 HELIX 4 AA4 THR B 47 THR B 61 1 15 HELIX 5 AA5 ASP B 65 ILE B 76 1 12 HELIX 6 AA6 PRO B 79 GLN B 104 1 26 HELIX 7 AA7 THR C 47 THR C 61 1 15 HELIX 8 AA8 ASP C 65 ILE C 76 1 12 HELIX 9 AA9 PRO C 79 GLN C 104 1 26 HELIX 10 AB1 THR D 47 THR D 61 1 15 HELIX 11 AB2 ASP D 65 ILE D 76 1 12 HELIX 12 AB3 PRO D 79 GLN D 99 1 21 LINK OP2 DA E 20 K K E 102 1555 1555 2.87 LINK O1 CAC E 101 K K F 102 1555 1555 3.39 LINK O2 DC F 6 K K F 102 1555 1555 2.84 LINK OP2 DA G 20 NA NA G 102 1555 1555 2.88 LINK OP2 DC H 18 K K H 103 1555 1555 2.68 CRYST1 109.597 75.494 97.229 90.00 120.25 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009124 0.000000 0.005321 0.00000 SCALE2 0.000000 0.013246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011906 0.00000