data_9B9I # _entry.id 9B9I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.396 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9B9I pdb_00009b9i 10.2210/pdb9b9i/pdb WWPDB D_1000282887 ? ? EMDB EMD-44383 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-09-18 2 'Structure model' 1 1 2024-09-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9B9I _pdbx_database_status.recvd_initial_deposition_date 2024-04-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Myxococcus xanthus EncA encapsulin engineered pore mutant with T=1 icosahedral symmetry' _pdbx_database_related.db_id EMD-44383 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email tgiessen@umich.edu _pdbx_contact_author.name_first Tobias _pdbx_contact_author.name_last Giessen _pdbx_contact_author.name_mi W _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6328-2031 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Andreas, M.P.' 1 0000-0001-8871-3053 'Kwon, S.' 2 0000-0002-0111-5219 'Giessen, T.W.' 3 0000-0001-6328-2031 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Nano' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1936-086X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 25740 _citation.page_last 25753 _citation.title 'Pore Engineering as a General Strategy to Improve Protein-Based Enzyme Nanoreactor Performance.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsnano.4c08186 _citation.pdbx_database_id_PubMed 39226211 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kwon, S.' 1 ? primary 'Andreas, M.P.' 2 0000-0001-8871-3053 primary 'Giessen, T.W.' 3 0000-0001-6328-2031 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Type 1 encapsulin shell protein EncA' _entity.formula_weight 30901.014 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'I203G, Y204G, del(205-210)' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Myxococcus xanthus EncA encapsulin engineered pore mutant with T=1 icosahedral symmetry' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MPDFLGHAENPLREEEWARLNETVIQVARRSLVGRRILDIYGPLGAGVQTVPYDEFQGVSPGAVDIVGEQETAMVFTDAR KFKTIPIIYKDFLLHWRDIEAARTHNMPLDVSAAAGAAALCAQQEDELIFYGDARLGYEGLMTANGRLTVPLGDWTSPGG GFQAIVEATRKLNEQGHFGPYAVVLSPRLYSQLHRGGEIETIRQLASDGVYQSNRLRGESGVVVSTGRENMDLAVSMDMV AAYLGASRMNHPFRVLEALLLRIKHPDAICTLEGAGATERR ; _entity_poly.pdbx_seq_one_letter_code_can ;MPDFLGHAENPLREEEWARLNETVIQVARRSLVGRRILDIYGPLGAGVQTVPYDEFQGVSPGAVDIVGEQETAMVFTDAR KFKTIPIIYKDFLLHWRDIEAARTHNMPLDVSAAAGAAALCAQQEDELIFYGDARLGYEGLMTANGRLTVPLGDWTSPGG GFQAIVEATRKLNEQGHFGPYAVVLSPRLYSQLHRGGEIETIRQLASDGVYQSNRLRGESGVVVSTGRENMDLAVSMDMV AAYLGASRMNHPFRVLEALLLRIKHPDAICTLEGAGATERR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 ASP n 1 4 PHE n 1 5 LEU n 1 6 GLY n 1 7 HIS n 1 8 ALA n 1 9 GLU n 1 10 ASN n 1 11 PRO n 1 12 LEU n 1 13 ARG n 1 14 GLU n 1 15 GLU n 1 16 GLU n 1 17 TRP n 1 18 ALA n 1 19 ARG n 1 20 LEU n 1 21 ASN n 1 22 GLU n 1 23 THR n 1 24 VAL n 1 25 ILE n 1 26 GLN n 1 27 VAL n 1 28 ALA n 1 29 ARG n 1 30 ARG n 1 31 SER n 1 32 LEU n 1 33 VAL n 1 34 GLY n 1 35 ARG n 1 36 ARG n 1 37 ILE n 1 38 LEU n 1 39 ASP n 1 40 ILE n 1 41 TYR n 1 42 GLY n 1 43 PRO n 1 44 LEU n 1 45 GLY n 1 46 ALA n 1 47 GLY n 1 48 VAL n 1 49 GLN n 1 50 THR n 1 51 VAL n 1 52 PRO n 1 53 TYR n 1 54 ASP n 1 55 GLU n 1 56 PHE n 1 57 GLN n 1 58 GLY n 1 59 VAL n 1 60 SER n 1 61 PRO n 1 62 GLY n 1 63 ALA n 1 64 VAL n 1 65 ASP n 1 66 ILE n 1 67 VAL n 1 68 GLY n 1 69 GLU n 1 70 GLN n 1 71 GLU n 1 72 THR n 1 73 ALA n 1 74 MET n 1 75 VAL n 1 76 PHE n 1 77 THR n 1 78 ASP n 1 79 ALA n 1 80 ARG n 1 81 LYS n 1 82 PHE n 1 83 LYS n 1 84 THR n 1 85 ILE n 1 86 PRO n 1 87 ILE n 1 88 ILE n 1 89 TYR n 1 90 LYS n 1 91 ASP n 1 92 PHE n 1 93 LEU n 1 94 LEU n 1 95 HIS n 1 96 TRP n 1 97 ARG n 1 98 ASP n 1 99 ILE n 1 100 GLU n 1 101 ALA n 1 102 ALA n 1 103 ARG n 1 104 THR n 1 105 HIS n 1 106 ASN n 1 107 MET n 1 108 PRO n 1 109 LEU n 1 110 ASP n 1 111 VAL n 1 112 SER n 1 113 ALA n 1 114 ALA n 1 115 ALA n 1 116 GLY n 1 117 ALA n 1 118 ALA n 1 119 ALA n 1 120 LEU n 1 121 CYS n 1 122 ALA n 1 123 GLN n 1 124 GLN n 1 125 GLU n 1 126 ASP n 1 127 GLU n 1 128 LEU n 1 129 ILE n 1 130 PHE n 1 131 TYR n 1 132 GLY n 1 133 ASP n 1 134 ALA n 1 135 ARG n 1 136 LEU n 1 137 GLY n 1 138 TYR n 1 139 GLU n 1 140 GLY n 1 141 LEU n 1 142 MET n 1 143 THR n 1 144 ALA n 1 145 ASN n 1 146 GLY n 1 147 ARG n 1 148 LEU n 1 149 THR n 1 150 VAL n 1 151 PRO n 1 152 LEU n 1 153 GLY n 1 154 ASP n 1 155 TRP n 1 156 THR n 1 157 SER n 1 158 PRO n 1 159 GLY n 1 160 GLY n 1 161 GLY n 1 162 PHE n 1 163 GLN n 1 164 ALA n 1 165 ILE n 1 166 VAL n 1 167 GLU n 1 168 ALA n 1 169 THR n 1 170 ARG n 1 171 LYS n 1 172 LEU n 1 173 ASN n 1 174 GLU n 1 175 GLN n 1 176 GLY n 1 177 HIS n 1 178 PHE n 1 179 GLY n 1 180 PRO n 1 181 TYR n 1 182 ALA n 1 183 VAL n 1 184 VAL n 1 185 LEU n 1 186 SER n 1 187 PRO n 1 188 ARG n 1 189 LEU n 1 190 TYR n 1 191 SER n 1 192 GLN n 1 193 LEU n 1 194 HIS n 1 195 ARG n 1 196 GLY n 1 197 GLY n 1 198 GLU n 1 199 ILE n 1 200 GLU n 1 201 THR n 1 202 ILE n 1 203 ARG n 1 204 GLN n 1 205 LEU n 1 206 ALA n 1 207 SER n 1 208 ASP n 1 209 GLY n 1 210 VAL n 1 211 TYR n 1 212 GLN n 1 213 SER n 1 214 ASN n 1 215 ARG n 1 216 LEU n 1 217 ARG n 1 218 GLY n 1 219 GLU n 1 220 SER n 1 221 GLY n 1 222 VAL n 1 223 VAL n 1 224 VAL n 1 225 SER n 1 226 THR n 1 227 GLY n 1 228 ARG n 1 229 GLU n 1 230 ASN n 1 231 MET n 1 232 ASP n 1 233 LEU n 1 234 ALA n 1 235 VAL n 1 236 SER n 1 237 MET n 1 238 ASP n 1 239 MET n 1 240 VAL n 1 241 ALA n 1 242 ALA n 1 243 TYR n 1 244 LEU n 1 245 GLY n 1 246 ALA n 1 247 SER n 1 248 ARG n 1 249 MET n 1 250 ASN n 1 251 HIS n 1 252 PRO n 1 253 PHE n 1 254 ARG n 1 255 VAL n 1 256 LEU n 1 257 GLU n 1 258 ALA n 1 259 LEU n 1 260 LEU n 1 261 LEU n 1 262 ARG n 1 263 ILE n 1 264 LYS n 1 265 HIS n 1 266 PRO n 1 267 ASP n 1 268 ALA n 1 269 ILE n 1 270 CYS n 1 271 THR n 1 272 LEU n 1 273 GLU n 1 274 GLY n 1 275 ALA n 1 276 GLY n 1 277 ALA n 1 278 THR n 1 279 GLU n 1 280 ARG n 1 281 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 281 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'encA, MXAN_3556' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Myxococcus xanthus DK 1622' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 246197 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 SER 60 60 ? ? ? A . n A 1 61 PRO 61 61 ? ? ? A . n A 1 62 GLY 62 62 ? ? ? A . n A 1 63 ALA 63 63 ? ? ? A . n A 1 64 VAL 64 64 ? ? ? A . n A 1 65 ASP 65 65 ? ? ? A . n A 1 66 ILE 66 66 ? ? ? A . n A 1 67 VAL 67 67 ? ? ? A . n A 1 68 GLY 68 68 ? ? ? A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 TRP 96 96 96 TRP TRP A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 CYS 121 121 121 CYS CYS A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 PHE 130 130 130 PHE PHE A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 TYR 138 138 138 TYR TYR A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 MET 142 142 142 MET MET A . n A 1 143 THR 143 143 143 THR THR A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 TRP 155 155 155 TRP TRP A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 SER 157 157 157 SER SER A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 PHE 162 162 162 PHE PHE A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 ILE 165 165 165 ILE ILE A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 ARG 170 170 170 ARG ARG A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 GLN 175 175 175 GLN GLN A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 HIS 177 177 177 HIS HIS A . n A 1 178 PHE 178 178 178 PHE PHE A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 PRO 180 180 180 PRO PRO A . n A 1 181 TYR 181 181 181 TYR TYR A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 PRO 187 187 187 PRO PRO A . n A 1 188 ARG 188 188 188 ARG ARG A . n A 1 189 LEU 189 189 189 LEU LEU A . n A 1 190 TYR 190 190 190 TYR TYR A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 HIS 194 194 194 HIS HIS A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 GLY 196 196 196 GLY GLY A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 GLU 198 198 198 GLU GLU A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 GLU 200 200 200 GLU GLU A . n A 1 201 THR 201 201 201 THR THR A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 ARG 203 203 203 ARG ARG A . n A 1 204 GLN 204 204 204 GLN GLN A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 ASP 208 208 208 ASP ASP A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 VAL 210 210 210 VAL VAL A . n A 1 211 TYR 211 211 211 TYR TYR A . n A 1 212 GLN 212 212 212 GLN GLN A . n A 1 213 SER 213 213 213 SER SER A . n A 1 214 ASN 214 214 214 ASN ASN A . n A 1 215 ARG 215 215 215 ARG ARG A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 GLY 221 221 221 GLY GLY A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 VAL 223 223 223 VAL VAL A . n A 1 224 VAL 224 224 224 VAL VAL A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 THR 226 226 226 THR THR A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 ARG 228 228 228 ARG ARG A . n A 1 229 GLU 229 229 229 GLU GLU A . n A 1 230 ASN 230 230 230 ASN ASN A . n A 1 231 MET 231 231 231 MET MET A . n A 1 232 ASP 232 232 232 ASP ASP A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 MET 237 237 237 MET MET A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 MET 239 239 239 MET MET A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 TYR 243 243 243 TYR TYR A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 GLY 245 245 245 GLY GLY A . n A 1 246 ALA 246 246 246 ALA ALA A . n A 1 247 SER 247 247 247 SER SER A . n A 1 248 ARG 248 248 248 ARG ARG A . n A 1 249 MET 249 249 249 MET MET A . n A 1 250 ASN 250 250 250 ASN ASN A . n A 1 251 HIS 251 251 251 HIS HIS A . n A 1 252 PRO 252 252 252 PRO PRO A . n A 1 253 PHE 253 253 253 PHE PHE A . n A 1 254 ARG 254 254 254 ARG ARG A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 LEU 256 256 256 LEU LEU A . n A 1 257 GLU 257 257 257 GLU GLU A . n A 1 258 ALA 258 258 258 ALA ALA A . n A 1 259 LEU 259 259 259 LEU LEU A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 ARG 262 262 262 ARG ARG A . n A 1 263 ILE 263 263 263 ILE ILE A . n A 1 264 LYS 264 264 264 LYS LYS A . n A 1 265 HIS 265 265 265 HIS HIS A . n A 1 266 PRO 266 266 266 PRO PRO A . n A 1 267 ASP 267 267 267 ASP ASP A . n A 1 268 ALA 268 268 268 ALA ALA A . n A 1 269 ILE 269 269 269 ILE ILE A . n A 1 270 CYS 270 270 270 CYS CYS A . n A 1 271 THR 271 271 271 THR THR A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 GLU 273 273 ? ? ? A . n A 1 274 GLY 274 274 ? ? ? A . n A 1 275 ALA 275 275 ? ? ? A . n A 1 276 GLY 276 276 ? ? ? A . n A 1 277 ALA 277 277 ? ? ? A . n A 1 278 THR 278 278 ? ? ? A . n A 1 279 GLU 279 279 ? ? ? A . n A 1 280 ARG 280 280 ? ? ? A . n A 1 281 ARG 281 281 ? ? ? A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 15 ? CG ? A GLU 15 CG 2 1 Y 1 A GLU 15 ? CD ? A GLU 15 CD 3 1 Y 1 A GLU 15 ? OE1 ? A GLU 15 OE1 4 1 Y 1 A GLU 15 ? OE2 ? A GLU 15 OE2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9B9I _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9B9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9B9I _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9B9I _struct.title 'Myxococcus xanthus EncA encapsulin engineered pore mutant with T=1 icosahedral symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9B9I _struct_keywords.text 'encapsulin, nanocompartment, pore mutant, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENCAP_MYXXD _struct_ref.pdbx_db_accession Q1D6H4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPDFLGHAENPLREEEWARLNETVIQVARRSLVGRRILDIYGPLGAGVQTVPYDEFQGVSPGAVDIVGEQETAMVFTDAR KFKTIPIIYKDFLLHWRDIEAARTHNMPLDVSAAAGAAALCAQQEDELIFYGDARLGYEGLMTANGRLTVPLGDWTSPGG GFQAIVEATRKLNEQGHFGPYAVVLSPRLYSQLHRIYEKTGVLEIETIRQLASDGVYQSNRLRGESGVVVSTGRENMDLA VSMDMVAAYLGASRMNHPFRVLEALLLRIKHPDAICTLEGAGATERR ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9B9I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 281 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q1D6H4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 287 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 281 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9B9I GLY A 196 ? UNP Q1D6H4 ILE 196 'engineered mutation' 196 1 1 9B9I GLY A 197 ? UNP Q1D6H4 TYR 197 'engineered mutation' 197 2 1 9B9I ? A ? ? UNP Q1D6H4 GLU 198 deletion ? 3 1 9B9I ? A ? ? UNP Q1D6H4 LYS 199 deletion ? 4 1 9B9I ? A ? ? UNP Q1D6H4 THR 200 deletion ? 5 1 9B9I ? A ? ? UNP Q1D6H4 GLY 201 deletion ? 6 1 9B9I ? A ? ? UNP Q1D6H4 VAL 202 deletion ? 7 1 9B9I ? A ? ? UNP Q1D6H4 LEU 203 deletion ? 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A 2 1 A 3 '(1-5)' A 4 '(1,2,6,10,23,24)' A 5 P A # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'electron microscopy' 'not applicable' 2 1 'gel filtration' ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 1.00000000 0.00000220 -0.00000155 -163.79993 -0.00000220 1.00000000 0.00000176 -163.80011 0.00000155 -0.00000176 1.00000000 -163.79996 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901699 -0.80901782 0.49999867 163.80038 0.80901793 0.49999891 0.30901630 -101.23359 -0.49999848 0.30901660 0.80901808 62.56552 3 'point symmetry operation' ? ? -0.80901699 -0.50000039 0.30901636 327.59994 0.50000070 -0.30901984 0.80901548 0.00093 -0.30901587 0.80901567 0.50000285 -0.00064 4 'point symmetry operation' ? ? -0.80901699 0.50000070 -0.30901587 265.03326 -0.50000039 -0.30901984 0.80901567 163.80090 0.30901636 0.80901548 0.50000285 -101.23418 5 'point symmetry operation' ? ? 0.30901699 0.80901793 -0.49999848 62.56536 -0.80901782 0.49999891 0.30901660 163.80033 0.49999867 0.30901630 0.80901808 -101.23378 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000310 327.59914 0.00000000 -1.00000000 -0.00000352 327.60094 0.00000310 -0.00000352 1.00000000 0.00007 7 'point symmetry operation' ? ? -0.30901854 0.80901877 -0.49999616 163.79895 -0.80901617 -0.50000000 -0.30901914 428.83431 -0.50000037 0.30901234 0.80901854 62.56646 8 'point symmetry operation' ? ? 0.80901604 0.50000290 -0.30901481 -0.00080 -0.49999961 0.30901699 -0.80901724 327.60001 -0.30902013 0.80901520 0.50000096 0.00045 9 'point symmetry operation' ? ? 0.80901795 -0.49999819 0.30901742 62.56557 0.49999930 0.30901699 -0.80901743 163.80039 0.30901562 0.80901811 0.49999904 -101.23386 10 'point symmetry operation' ? ? -0.30901544 -0.80901698 0.50000099 265.03347 0.80901606 -0.50000000 -0.30901945 163.80097 0.50000248 0.30901704 0.80901544 -101.23410 11 'point symmetry operation' ? ? -1.00000000 -0.00000440 0.00000000 327.60037 -0.00000440 1.00000000 0.00000352 0.00014 0.00000000 0.00000352 -1.00000000 327.59941 12 'point symmetry operation' ? ? -0.30902055 0.80901562 -0.50000003 163.80043 0.80901481 0.50000356 0.30901694 -101.23395 0.50000133 -0.30901484 -0.80901699 265.03353 13 'point symmetry operation' ? ? 0.80901479 0.50000175 -0.30901992 0.00043 0.50000317 -0.30901479 0.80901588 -0.00037 0.30901763 -0.80901675 -0.50000000 327.60005 14 'point symmetry operation' ? ? 0.80901919 -0.49999934 0.30901231 62.56639 -0.49999574 -0.30901919 0.80901879 163.79952 -0.30901812 -0.80901656 -0.50000000 428.83417 15 'point symmetry operation' ? ? -0.30901343 -0.80902013 0.49999712 265.03429 -0.80901742 0.49999644 0.30902165 163.79984 -0.50000152 -0.30901454 -0.80901699 428.83377 16 'point symmetry operation' ? ? 1.00000000 0.00000440 -0.00000310 -0.00021 0.00000440 -1.00000000 0.00000000 327.59964 -0.00000310 0.00000000 -1.00000000 327.60050 17 'point symmetry operation' ? ? 0.30902210 -0.80901657 0.49999752 163.79953 -0.80901657 -0.50000247 -0.30901410 428.83396 0.49999752 -0.30901410 -0.80901963 265.03446 18 'point symmetry operation' ? ? -0.80901384 -0.50000426 0.30901837 327.59973 -0.50000426 0.30901764 -0.80901412 327.60015 0.30901837 -0.80901412 -0.50000381 327.60012 19 'point symmetry operation' ? ? -0.80902015 0.49999683 -0.30901386 265.03408 0.49999683 0.30902204 -0.80901703 163.79991 -0.30901386 -0.80901703 -0.50000189 428.83385 20 'point symmetry operation' ? ? 0.30901188 0.80901918 -0.49999963 62.56618 0.80901918 -0.49999535 -0.30901880 163.79959 -0.49999963 -0.30901880 -0.80901653 428.83409 21 'point symmetry operation' ? ? -0.00000065 -0.00000021 1.00000000 -0.00003 1.00000000 0.00000044 0.00000065 0.00018 -0.00000044 1.00000000 0.00000021 -0.00015 22 'point symmetry operation' ? ? -0.49999885 0.30901703 0.80901769 62.56541 0.30901703 -0.80901739 0.49999933 163.80056 0.80901769 0.49999933 0.30901625 -101.23380 23 'point symmetry operation' ? ? -0.30901544 0.80901606 0.50000248 -0.00088 -0.80901698 -0.50000000 0.30901704 327.60012 0.50000099 -0.30901945 0.80901544 0.00064 24 'point symmetry operation' ? ? 0.30901699 0.80901522 0.50000288 -101.23441 -0.80901701 0.50000109 -0.30901518 265.03344 -0.49999997 -0.30901989 0.80901591 163.80061 25 'point symmetry operation' ? ? 0.49999864 0.30901567 0.80901834 -101.23389 0.30901696 0.80901835 -0.49999782 62.56554 -0.80901785 0.49999862 0.30901699 163.80013 26 'point symmetry operation' ? ? 0.00000375 -0.00000331 1.00000000 -0.00024 -1.00000000 -0.00000044 0.00000375 327.59946 0.00000044 -1.00000000 -0.00000331 327.60065 27 'point symmetry operation' ? ? -0.50000000 0.30901192 0.80901893 62.56623 -0.30901923 0.80901875 -0.49999577 163.79936 -0.80901614 -0.50000029 -0.30901875 428.83410 28 'point symmetry operation' ? ? -0.30902055 0.80901481 0.50000133 0.00035 0.80901562 0.50000356 -0.30901484 -0.00048 -0.50000003 0.30901694 -0.80901699 327.59986 29 'point symmetry operation' ? ? 0.30901498 0.80901837 0.49999901 -101.23397 0.80901837 -0.49999753 0.30901738 62.56576 0.49999901 0.30901738 -0.80901746 163.80020 30 'point symmetry operation' ? ? 0.50000251 0.30901768 0.80901518 -101.23433 -0.30901476 -0.80901699 0.50000138 265.03365 0.80901630 -0.49999958 -0.30901950 163.80068 31 'point symmetry operation' ? ? 0.00000065 0.00000331 -1.00000000 327.59917 -1.00000000 -0.00000396 -0.00000065 327.60076 -0.00000396 1.00000000 0.00000331 -0.00008 32 'point symmetry operation' ? ? 0.50000136 -0.30901548 -0.80901673 265.03342 -0.30901987 0.80901563 -0.50000042 163.80074 0.80901505 0.50000314 0.30901699 -101.23412 33 'point symmetry operation' ? ? 0.30901699 -0.80901701 -0.49999997 327.60002 0.80901522 0.50000109 -0.30901989 0.00082 0.50000288 -0.30901518 0.80901591 -0.00045 34 'point symmetry operation' ? ? -0.30901854 -0.80901617 -0.50000037 428.83406 0.80901877 -0.50000000 0.30901234 62.56692 -0.49999616 -0.30901914 0.80901854 163.79944 35 'point symmetry operation' ? ? -0.50000115 -0.30901412 -0.80901738 428.83353 -0.30901412 -0.80902011 0.49999673 265.03482 -0.80901738 0.49999673 0.30902126 163.79966 36 'point symmetry operation' ? ? -0.00000375 0.00000021 -1.00000000 327.60040 1.00000000 0.00000396 -0.00000375 0.00032 0.00000396 -1.00000000 -0.00000021 327.59956 37 'point symmetry operation' ? ? 0.49999749 -0.30901347 -0.80901989 265.03424 0.30902207 -0.80901699 0.49999686 163.80007 -0.80901660 -0.50000218 -0.30901449 428.83379 38 'point symmetry operation' ? ? 0.30901900 -0.80901386 -0.50000384 327.59981 -0.80901386 -0.50000465 0.30901769 327.60026 -0.50000384 0.30901769 -0.80901436 327.59993 39 'point symmetry operation' ? ? -0.30901343 -0.80901742 -0.50000152 428.83362 -0.80902013 0.49999644 -0.30901454 265.03461 0.49999712 0.30902165 -0.80901699 163.79973 40 'point symmetry operation' ? ? -0.50000000 -0.30901923 -0.80901614 428.83398 0.30901192 0.80901875 -0.50000029 62.56671 0.80901893 -0.49999577 -0.30901875 163.79950 41 'point symmetry operation' ? ? -0.00000065 1.00000000 -0.00000044 -0.00018 -0.00000021 0.00000044 1.00000000 0.00015 1.00000000 0.00000065 0.00000021 0.00003 42 'point symmetry operation' ? ? 0.80901795 0.49999930 0.30901562 -101.23391 -0.49999819 0.30901699 0.80901811 62.56560 0.30901742 -0.80901743 0.49999904 163.80036 43 'point symmetry operation' ? ? 0.50000136 -0.30901987 0.80901505 0.00054 -0.30901548 0.80901563 0.50000314 -0.00056 -0.80901673 -0.50000042 0.30901699 327.59997 44 'point symmetry operation' ? ? -0.50000000 -0.30902052 0.80901565 163.80059 0.30901631 0.80901523 0.50000327 -101.23401 -0.80901725 0.50000067 -0.30901523 265.03337 45 'point symmetry operation' ? ? -0.80901824 0.49999825 0.30901657 163.80015 0.49999825 0.30901635 0.80901832 -101.23357 0.30901657 0.80901832 -0.49999811 62.56547 46 'point symmetry operation' ? ? 0.00000065 -1.00000000 -0.00000396 327.60055 0.00000331 -0.00000396 1.00000000 0.00029 -1.00000000 -0.00000065 0.00000331 327.59938 47 'point symmetry operation' ? ? -0.80901575 -0.50000066 -0.30901918 428.83400 -0.50000066 0.30901195 0.80901851 62.56676 -0.30901918 0.80901851 -0.49999619 163.79927 48 'point symmetry operation' ? ? -0.50000000 0.30901631 -0.80901725 327.59983 -0.30902052 0.80901523 0.50000067 0.00074 0.80901565 0.50000327 -0.30901523 -0.00056 49 'point symmetry operation' ? ? 0.49999864 0.30901696 -0.80901785 163.80022 0.30901567 0.80901835 0.49999862 -101.23365 0.80901834 -0.49999782 0.30901699 62.56568 50 'point symmetry operation' ? ? 0.80901604 -0.49999961 -0.30902013 163.80066 0.50000290 0.30901699 0.80901520 -101.23393 -0.30901481 -0.80901724 0.50000096 265.03358 51 'point symmetry operation' ? ? -0.00000375 1.00000000 0.00000396 -0.00039 0.00000021 0.00000396 -1.00000000 327.59949 -1.00000000 -0.00000375 -0.00000021 327.60047 52 'point symmetry operation' ? ? 0.80901479 0.50000317 0.30901763 -101.23435 0.50000175 -0.30901479 -0.80901675 265.03360 -0.30901992 0.80901588 -0.50000000 163.80045 53 'point symmetry operation' ? ? 0.50000251 -0.30901476 0.80901630 -0.00069 0.30901768 -0.80901699 -0.49999958 327.60020 0.80901518 0.50000138 -0.30901950 0.00053 54 'point symmetry operation' ? ? -0.49999613 -0.30901851 0.80901880 163.79911 -0.30901851 -0.80901659 -0.49999971 428.83437 0.80901880 -0.49999971 0.30901273 62.56662 55 'point symmetry operation' ? ? -0.80901699 0.49999710 0.30902168 163.79930 -0.50000181 -0.30901415 -0.80901696 428.83394 -0.30901407 -0.80901987 0.49999715 265.03452 56 'point symmetry operation' ? ? 0.00000375 -1.00000000 0.00000044 327.59932 -0.00000331 -0.00000044 -1.00000000 327.60079 1.00000000 0.00000375 -0.00000331 0.00010 57 'point symmetry operation' ? ? -0.80901699 -0.50000181 -0.30901407 428.83355 0.49999710 -0.30901415 -0.80901987 265.03477 0.30902168 -0.80901696 0.49999715 163.79989 58 'point symmetry operation' ? ? -0.50000387 0.30901832 -0.80901410 327.59962 0.30901832 -0.80901387 -0.50000423 327.60034 -0.80901410 -0.50000423 0.30901774 327.60004 59 'point symmetry operation' ? ? 0.49999749 0.30902207 -0.80901660 163.79937 -0.30901347 -0.80901699 -0.50000218 428.83402 -0.80901989 0.49999686 -0.30901449 265.03430 60 'point symmetry operation' ? ? 0.80901919 -0.49999574 -0.30901812 163.79918 -0.49999934 -0.30901919 -0.80901656 428.83429 0.30901231 0.80901879 -0.50000000 62.56641 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 13 ? LEU A 32 ? ARG A 13 LEU A 32 1 ? 20 HELX_P HELX_P2 AA2 VAL A 33 ? ILE A 37 ? VAL A 33 ILE A 37 5 ? 5 HELX_P HELX_P3 AA3 HIS A 95 ? ASN A 106 ? HIS A 95 ASN A 106 1 ? 12 HELX_P HELX_P4 AA4 VAL A 111 ? TYR A 131 ? VAL A 111 TYR A 131 1 ? 21 HELX_P HELX_P5 AA5 GLY A 159 ? GLU A 174 ? GLY A 159 GLU A 174 1 ? 16 HELX_P HELX_P6 AA6 SER A 186 ? SER A 191 ? SER A 186 SER A 191 1 ? 6 HELX_P HELX_P7 AA7 HIS A 265 ? ASP A 267 ? HIS A 265 ASP A 267 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 39 ? PRO A 43 ? ASP A 39 PRO A 43 AA1 2 MET A 231 ? TYR A 243 ? MET A 231 TYR A 243 AA1 3 HIS A 251 ? ILE A 263 ? HIS A 251 ILE A 263 AA1 4 ILE A 87 ? LEU A 94 ? ILE A 87 LEU A 94 AA2 1 THR A 50 ? PRO A 52 ? THR A 50 PRO A 52 AA2 2 PHE A 82 ? THR A 84 ? PHE A 82 THR A 84 AA3 1 LEU A 148 ? THR A 149 ? LEU A 148 THR A 149 AA3 2 ILE A 269 ? THR A 271 ? ILE A 269 THR A 271 AA3 3 GLY A 221 ? SER A 225 ? GLY A 221 SER A 225 AA3 4 TYR A 181 ? LEU A 185 ? TYR A 181 LEU A 185 AA3 5 GLY A 209 ? GLN A 212 ? GLY A 209 GLN A 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASP A 39 ? N ASP A 39 O LEU A 233 ? O LEU A 233 AA1 2 3 N VAL A 240 ? N VAL A 240 O LEU A 256 ? O LEU A 256 AA1 3 4 O GLU A 257 ? O GLU A 257 N ILE A 88 ? N ILE A 88 AA2 1 2 N VAL A 51 ? N VAL A 51 O LYS A 83 ? O LYS A 83 AA3 1 2 N LEU A 148 ? N LEU A 148 O ILE A 269 ? O ILE A 269 AA3 2 3 O CYS A 270 ? O CYS A 270 N VAL A 223 ? N VAL A 223 AA3 3 4 O VAL A 222 ? O VAL A 222 N VAL A 184 ? N VAL A 184 AA3 4 5 N LEU A 185 ? N LEU A 185 O TYR A 211 ? O TYR A 211 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 3 ? ? 68.86 -1.96 2 1 TYR A 41 ? ? -85.19 44.23 3 1 ALA A 134 ? ? 72.13 -4.83 4 1 PHE A 178 ? ? -120.01 -119.17 5 1 SER A 247 ? ? -104.63 -87.62 6 1 MET A 249 ? ? 80.52 -19.79 # _pdbx_point_symmetry.entry_id 9B9I _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9B9I _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'cross-correlation coefficient' _em_3d_fitting.details ;ChimeraX v1.2.5 was first used to place the starting model (PDB: 7S21) in the cryo-EM map by using the fit in map command. The model was then manually refined using Coot v 0.9.8.1, followed by iterative real-space refinements in Phenix v1.20.1-4487-000. BioMT operators were identified from the cryo-EM map using map_symmetry command in Phenix then applied to the model using the apply_ncs command to assemble the complete shell. Real-space refinement was repeated in Phenix with NCS constraints applied. The BioMT operators were then identified using find_ncs command in Phenix and applied to the header of a protomer of the NCS-refined model. ; _em_3d_fitting.overall_b_value 126.4 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 7S21 _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7S21 _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9B9I _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ;CryoSPARC homogeneous refinement was performed with I symmetry, per-particle defocus optimization, per-group CTF-parameterization, and Ewald sphere correction enabled. ; _em_3d_reconstruction.resolution 2.86 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 61808 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '150 mM NaCl, 20 mM Tris pH 7.5' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Myxococcus xanthus EncA encapsulin engineered pore mutant with T=1 icosahedral symmetry' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 9B9I _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 3838 _em_image_scans.dimension_width 3710 _em_image_scans.frames_per_image 20 _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 9B9I _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TECNAI ARCTICA' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 45000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details 'The grid was glow discharged at 5 mA for 60 seconds under vacuum.' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_virus_entity.details ? _em_virus_entity.empty YES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type 'VIRUS-LIKE PARTICLE' # _em_vitrification.entry_id 9B9I _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 295 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ;Blot force: 20 Blot time: 4 seconds Wait time: 0 seconds ; # _em_experiment.entry_id 9B9I _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9B9I _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 60 ? A SER 60 3 1 Y 1 A PRO 61 ? A PRO 61 4 1 Y 1 A GLY 62 ? A GLY 62 5 1 Y 1 A ALA 63 ? A ALA 63 6 1 Y 1 A VAL 64 ? A VAL 64 7 1 Y 1 A ASP 65 ? A ASP 65 8 1 Y 1 A ILE 66 ? A ILE 66 9 1 Y 1 A VAL 67 ? A VAL 67 10 1 Y 1 A GLY 68 ? A GLY 68 11 1 Y 1 A GLU 273 ? A GLU 273 12 1 Y 1 A GLY 274 ? A GLY 274 13 1 Y 1 A ALA 275 ? A ALA 275 14 1 Y 1 A GLY 276 ? A GLY 276 15 1 Y 1 A ALA 277 ? A ALA 277 16 1 Y 1 A THR 278 ? A THR 278 17 1 Y 1 A GLU 279 ? A GLU 279 18 1 Y 1 A ARG 280 ? A ARG 280 19 1 Y 1 A ARG 281 ? A ARG 281 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2024-04-02 _em_admin.deposition_site RCSB _em_admin.entry_id 9B9I _em_admin.last_update 2024-09-25 _em_admin.map_release_date 2024-09-18 _em_admin.title 'Myxococcus xanthus EncA encapsulin engineered pore mutant with T=1 icosahedral symmetry' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 150 mM NaCl 1 'sodium chloride' 1 20 mM C4H11NO3 2 'tris(hydroxymethyl)aminomethane' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 1.9 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 246197 _em_entity_assembly_naturalsource.organism 'Myxococcus xanthus DK 1622' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 4.0 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 39.18 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 711 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 66813 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' 'Template Picker' 1 1 ? ? cryoSPARC 3.10.0 'IMAGE ACQUISITION' ? 2 ? ? 1 Leginon ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' 'Patch CTF' 4 1 ? ? cryoSPARC 3.10.0 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' 1.2.5 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? cryoSPARC 3.10.0 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 3.10.0 CLASSIFICATION ? 11 1 ? ? ? ? RECONSTRUCTION 'Homogeneous refinement' 12 1 ? ? cryoSPARC 3.10.0 'VOLUME SELECTION' ? 13 1 1 1 ? ? 'SERIES ALIGNMENT' ? 14 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 15 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 16 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 17 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 18 1 1 1 ? ? 'MODEL REFINEMENT' ? 19 ? 1 ? PHENIX v1.20.1-4487-000 'MODEL REFINEMENT' ? 20 ? 1 ? Coot v0.9.8.1 # _em_specimen.concentration 3.0 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM133325-05 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7S21 # _atom_sites.entry_id 9B9I _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #