HEADER BIOSYNTHETIC PROTEIN 17-APR-24 9BFG TITLE STRUCTURE OF THE CROSSLINKED PCP-E DIDOMAIN OF TYROCIDINE SYNTHETASE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROCIDINE SYNTHASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TYROCIDINE SYNTHASE I; COMPND 5 EC: 5.1.1.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS PARABREVIS; SOURCE 3 ORGANISM_TAXID: 54914; SOURCE 4 GENE: TYCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, CROSSLINKED, NRPS, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.W.HEBERLIG,M.D.BURKART REVDAT 1 09-OCT-24 9BFG 0 JRNL AUTH G.W.HEBERLIG,J.J.LA CLAIR,M.D.BURKART JRNL TITL CROSSLINKING REVEALS THE MOLECULAR DETAILS OF INTERMODULAR JRNL TITL 2 CONDENSATION AND EPIMERIZATION IN NONRIBOSOMAL PEPTIDE JRNL TITL 3 BIOSYNTHESIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 83867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.058 REMARK 3 FREE R VALUE TEST SET COUNT : 4242 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 304 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 166 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58600 REMARK 3 B22 (A**2) : 0.58600 REMARK 3 B33 (A**2) : -1.90200 REMARK 3 B12 (A**2) : 0.29300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.417 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8852 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 8259 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12017 ; 1.553 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19005 ; 1.343 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1063 ; 6.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 475 ;35.963 ;23.411 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1486 ;14.590 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;18.073 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1133 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10001 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2039 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1764 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 66 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4217 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 349 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4258 ; 3.549 ; 4.248 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4257 ; 3.547 ; 4.248 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5319 ; 5.055 ; 6.370 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5320 ; 5.055 ; 6.371 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4594 ; 4.669 ; 4.753 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4595 ; 4.668 ; 4.753 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6698 ; 6.976 ; 6.950 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6699 ; 6.975 ; 6.951 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9BFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000283287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83879 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 46.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 1.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES, 1.8 M AMMONIUM SULFATE, 10% REMARK 280 V/V GLYCEROL, PH 7.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.87900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.87900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.87900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 216.38100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 GLN A 9 REMARK 465 SER A 10 REMARK 465 LYS A 544 REMARK 465 LYS A 545 REMARK 465 GLY A 546 REMARK 465 SER A 547 REMARK 465 ARG A 548 REMARK 465 SER A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 ASN B 8 REMARK 465 GLN B 9 REMARK 465 SER B 10 REMARK 465 GLN B 11 REMARK 465 ALA B 12 REMARK 465 LYS B 545 REMARK 465 GLY B 546 REMARK 465 SER B 547 REMARK 465 ARG B 548 REMARK 465 SER B 549 REMARK 465 HIS B 550 REMARK 465 HIS B 551 REMARK 465 HIS B 552 REMARK 465 HIS B 553 REMARK 465 HIS B 554 REMARK 465 HIS B 555 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 76 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 543 CG CD OE1 OE2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 ASN B 161 CG OD1 ND2 REMARK 470 GLU B 543 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS B 372 H ARG B 374 1.34 REMARK 500 CB TYR A 76 O HOH A 855 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG SER A 286 HE22 GLN B 364 5554 1.11 REMARK 500 OD1 ASN A 75 OG SER B 441 5554 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 148.91 -170.27 REMARK 500 TYR A 76 75.16 -116.47 REMARK 500 PRO A 77 31.00 -81.45 REMARK 500 TRP A 122 79.26 -159.88 REMARK 500 ASP A 188 40.83 -94.55 REMARK 500 GLU A 208 -75.97 -132.68 REMARK 500 GLU A 308 97.96 -64.99 REMARK 500 ARG A 374 60.00 -95.67 REMARK 500 VAL A 433 -51.13 -128.33 REMARK 500 PRO B 77 36.56 -83.21 REMARK 500 HIS B 121 76.78 -106.69 REMARK 500 TRP B 122 85.25 -151.57 REMARK 500 HIS B 150 79.23 -102.37 REMARK 500 ASN B 161 66.13 68.25 REMARK 500 ASP B 188 41.08 -90.78 REMARK 500 GLU B 208 -57.68 -140.19 REMARK 500 ASP B 311 62.49 38.27 REMARK 500 ARG B 374 54.07 -95.80 REMARK 500 GLN B 402 49.68 -88.21 REMARK 500 ARG B 422 50.25 37.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 856 DISTANCE = 6.46 ANGSTROMS DBREF 9BFG A 3 545 UNP P09095 TYCA_BREPA 515 1057 DBREF 9BFG B 3 545 UNP P09095 TYCA_BREPA 515 1057 SEQADV 9BFG MET A 1 UNP P09095 EXPRESSION TAG SEQADV 9BFG VAL A 2 UNP P09095 EXPRESSION TAG SEQADV 9BFG ALA A 370 UNP P09095 GLU 882 ENGINEERED MUTATION SEQADV 9BFG GLY A 546 UNP P09095 EXPRESSION TAG SEQADV 9BFG SER A 547 UNP P09095 EXPRESSION TAG SEQADV 9BFG ARG A 548 UNP P09095 EXPRESSION TAG SEQADV 9BFG SER A 549 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS A 550 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS A 551 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS A 552 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS A 553 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS A 554 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS A 555 UNP P09095 EXPRESSION TAG SEQADV 9BFG MET B 1 UNP P09095 EXPRESSION TAG SEQADV 9BFG VAL B 2 UNP P09095 EXPRESSION TAG SEQADV 9BFG ALA B 370 UNP P09095 GLU 882 ENGINEERED MUTATION SEQADV 9BFG GLY B 546 UNP P09095 EXPRESSION TAG SEQADV 9BFG SER B 547 UNP P09095 EXPRESSION TAG SEQADV 9BFG ARG B 548 UNP P09095 EXPRESSION TAG SEQADV 9BFG SER B 549 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS B 550 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS B 551 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS B 552 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS B 553 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS B 554 UNP P09095 EXPRESSION TAG SEQADV 9BFG HIS B 555 UNP P09095 EXPRESSION TAG SEQRES 1 A 555 MET VAL PRO ASP LEU THR ALA ASN GLN SER GLN ALA ALA SEQRES 2 A 555 TYR HIS PRO PRO ARG THR GLU THR GLU SER ILE LEU VAL SEQRES 3 A 555 SER ILE TRP GLN ASN VAL LEU GLY ILE GLU LYS ILE GLY SEQRES 4 A 555 ILE ARG ASP ASN PHE TYR SER LEU GLY GLY ASP SER ILE SEQRES 5 A 555 GLN ALA ILE GLN VAL VAL ALA ARG LEU HIS SER TYR GLN SEQRES 6 A 555 LEU LYS LEU GLU THR LYS ASP LEU LEU ASN TYR PRO THR SEQRES 7 A 555 ILE GLU GLN VAL ALA LEU PHE VAL LYS SER THR THR ARG SEQRES 8 A 555 LYS SER ASP GLN GLY ILE ILE ALA GLY ASN VAL PRO LEU SEQRES 9 A 555 THR PRO ILE GLN LYS TRP PHE PHE GLY LYS ASN PHE THR SEQRES 10 A 555 ASN THR GLY HIS TRP ASN GLN SER SER VAL LEU TYR ARG SEQRES 11 A 555 PRO GLU GLY PHE ASP PRO LYS VAL ILE GLN SER VAL MET SEQRES 12 A 555 ASP LYS ILE ILE GLU HIS HIS ASP ALA LEU ARG MET VAL SEQRES 13 A 555 TYR GLN HIS GLU ASN GLY ASN VAL VAL GLN HIS ASN ARG SEQRES 14 A 555 GLY LEU GLY GLY GLN LEU TYR ASP PHE PHE SER TYR ASN SEQRES 15 A 555 LEU THR ALA GLN PRO ASP VAL GLN GLN ALA ILE GLU ALA SEQRES 16 A 555 GLU THR GLN ARG LEU HIS SER SER MET ASN LEU GLN GLU SEQRES 17 A 555 GLY PRO LEU VAL LYS VAL ALA LEU PHE GLN THR LEU HIS SEQRES 18 A 555 GLY ASP HIS LEU PHE LEU ALA ILE HIS HIS LEU VAL VAL SEQRES 19 A 555 ASP GLY ILE SER TRP ARG ILE LEU PHE GLU ASP LEU ALA SEQRES 20 A 555 THR GLY TYR ALA GLN ALA LEU ALA GLY GLN ALA ILE SER SEQRES 21 A 555 LEU PRO GLU LYS THR ASP SER PHE GLN SER TRP SER GLN SEQRES 22 A 555 TRP LEU GLN GLU TYR ALA ASN GLU ALA ASP LEU LEU SER SEQRES 23 A 555 GLU ILE PRO TYR TRP GLU SER LEU GLU SER GLN ALA LYS SEQRES 24 A 555 ASN VAL SER LEU PRO LYS ASP TYR GLU VAL THR ASP CYS SEQRES 25 A 555 LYS GLN LYS SER VAL ARG ASN MET ARG ILE ARG LEU HIS SEQRES 26 A 555 PRO GLU GLU THR GLU GLN LEU LEU LYS HIS ALA ASN GLN SEQRES 27 A 555 ALA TYR GLN THR GLU ILE ASN ASP LEU LEU LEU ALA ALA SEQRES 28 A 555 LEU GLY LEU ALA PHE ALA GLU TRP SER LYS LEU ALA GLN SEQRES 29 A 555 ILE VAL ILE HIS LEU ALA GLY HIS GLY ARG GLU ASP ILE SEQRES 30 A 555 ILE GLU GLN ALA ASN VAL ALA ARG THR VAL GLY TRP PHE SEQRES 31 A 555 THR SER GLN TYR PRO VAL LEU LEU ASP LEU LYS GLN THR SEQRES 32 A 555 ALA PRO LEU SER ASP TYR ILE LYS LEU THR LYS GLU ASN SEQRES 33 A 555 MET ARG LYS ILE PRO ARG LYS GLY ILE GLY TYR ASP ILE SEQRES 34 A 555 LEU LYS HIS VAL THR LEU PRO GLU ASN ARG GLY SER LEU SEQRES 35 A 555 SER PHE ARG VAL GLN PRO GLU VAL THR PHE ASN TYR LEU SEQRES 36 A 555 GLY GLN PHE ASP ALA ASP MET ARG THR GLU LEU PHE THR SEQRES 37 A 555 ARG SER PRO TYR SER GLY GLY ASN THR LEU GLY ALA ASP SEQRES 38 A 555 GLY LYS ASN ASN LEU SER PRO GLU SER GLU VAL TYR THR SEQRES 39 A 555 ALA LEU ASN ILE THR GLY LEU ILE GLU GLY GLY GLU LEU SEQRES 40 A 555 VAL LEU THR PHE SER TYR SER SER GLU GLN TYR ARG GLU SEQRES 41 A 555 GLU SER ILE GLN GLN LEU SER GLN SER TYR GLN LYS HIS SEQRES 42 A 555 LEU LEU ALA ILE ILE ALA HIS CYS THR GLU LYS LYS GLY SEQRES 43 A 555 SER ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 555 MET VAL PRO ASP LEU THR ALA ASN GLN SER GLN ALA ALA SEQRES 2 B 555 TYR HIS PRO PRO ARG THR GLU THR GLU SER ILE LEU VAL SEQRES 3 B 555 SER ILE TRP GLN ASN VAL LEU GLY ILE GLU LYS ILE GLY SEQRES 4 B 555 ILE ARG ASP ASN PHE TYR SER LEU GLY GLY ASP SER ILE SEQRES 5 B 555 GLN ALA ILE GLN VAL VAL ALA ARG LEU HIS SER TYR GLN SEQRES 6 B 555 LEU LYS LEU GLU THR LYS ASP LEU LEU ASN TYR PRO THR SEQRES 7 B 555 ILE GLU GLN VAL ALA LEU PHE VAL LYS SER THR THR ARG SEQRES 8 B 555 LYS SER ASP GLN GLY ILE ILE ALA GLY ASN VAL PRO LEU SEQRES 9 B 555 THR PRO ILE GLN LYS TRP PHE PHE GLY LYS ASN PHE THR SEQRES 10 B 555 ASN THR GLY HIS TRP ASN GLN SER SER VAL LEU TYR ARG SEQRES 11 B 555 PRO GLU GLY PHE ASP PRO LYS VAL ILE GLN SER VAL MET SEQRES 12 B 555 ASP LYS ILE ILE GLU HIS HIS ASP ALA LEU ARG MET VAL SEQRES 13 B 555 TYR GLN HIS GLU ASN GLY ASN VAL VAL GLN HIS ASN ARG SEQRES 14 B 555 GLY LEU GLY GLY GLN LEU TYR ASP PHE PHE SER TYR ASN SEQRES 15 B 555 LEU THR ALA GLN PRO ASP VAL GLN GLN ALA ILE GLU ALA SEQRES 16 B 555 GLU THR GLN ARG LEU HIS SER SER MET ASN LEU GLN GLU SEQRES 17 B 555 GLY PRO LEU VAL LYS VAL ALA LEU PHE GLN THR LEU HIS SEQRES 18 B 555 GLY ASP HIS LEU PHE LEU ALA ILE HIS HIS LEU VAL VAL SEQRES 19 B 555 ASP GLY ILE SER TRP ARG ILE LEU PHE GLU ASP LEU ALA SEQRES 20 B 555 THR GLY TYR ALA GLN ALA LEU ALA GLY GLN ALA ILE SER SEQRES 21 B 555 LEU PRO GLU LYS THR ASP SER PHE GLN SER TRP SER GLN SEQRES 22 B 555 TRP LEU GLN GLU TYR ALA ASN GLU ALA ASP LEU LEU SER SEQRES 23 B 555 GLU ILE PRO TYR TRP GLU SER LEU GLU SER GLN ALA LYS SEQRES 24 B 555 ASN VAL SER LEU PRO LYS ASP TYR GLU VAL THR ASP CYS SEQRES 25 B 555 LYS GLN LYS SER VAL ARG ASN MET ARG ILE ARG LEU HIS SEQRES 26 B 555 PRO GLU GLU THR GLU GLN LEU LEU LYS HIS ALA ASN GLN SEQRES 27 B 555 ALA TYR GLN THR GLU ILE ASN ASP LEU LEU LEU ALA ALA SEQRES 28 B 555 LEU GLY LEU ALA PHE ALA GLU TRP SER LYS LEU ALA GLN SEQRES 29 B 555 ILE VAL ILE HIS LEU ALA GLY HIS GLY ARG GLU ASP ILE SEQRES 30 B 555 ILE GLU GLN ALA ASN VAL ALA ARG THR VAL GLY TRP PHE SEQRES 31 B 555 THR SER GLN TYR PRO VAL LEU LEU ASP LEU LYS GLN THR SEQRES 32 B 555 ALA PRO LEU SER ASP TYR ILE LYS LEU THR LYS GLU ASN SEQRES 33 B 555 MET ARG LYS ILE PRO ARG LYS GLY ILE GLY TYR ASP ILE SEQRES 34 B 555 LEU LYS HIS VAL THR LEU PRO GLU ASN ARG GLY SER LEU SEQRES 35 B 555 SER PHE ARG VAL GLN PRO GLU VAL THR PHE ASN TYR LEU SEQRES 36 B 555 GLY GLN PHE ASP ALA ASP MET ARG THR GLU LEU PHE THR SEQRES 37 B 555 ARG SER PRO TYR SER GLY GLY ASN THR LEU GLY ALA ASP SEQRES 38 B 555 GLY LYS ASN ASN LEU SER PRO GLU SER GLU VAL TYR THR SEQRES 39 B 555 ALA LEU ASN ILE THR GLY LEU ILE GLU GLY GLY GLU LEU SEQRES 40 B 555 VAL LEU THR PHE SER TYR SER SER GLU GLN TYR ARG GLU SEQRES 41 B 555 GLU SER ILE GLN GLN LEU SER GLN SER TYR GLN LYS HIS SEQRES 42 B 555 LEU LEU ALA ILE ILE ALA HIS CYS THR GLU LYS LYS GLY SEQRES 43 B 555 SER ARG SER HIS HIS HIS HIS HIS HIS HET SO4 A 601 5 HET SO4 A 602 5 HET MES A 603 25 HET SO4 A 604 5 HET GOL A 605 14 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET 2GH A 610 49 HET SO4 A 611 5 HET GOL A 612 14 HET SO4 B 601 5 HET SO4 B 602 5 HET MES B 603 25 HET SO4 B 604 5 HET MES B 605 25 HET GOL B 606 14 HET SO4 B 607 5 HET 2GH B 608 49 HET GOL B 609 14 HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETNAM 2GH N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY) HETNAM 2 2GH BUTANOYL]-N-PENTYL-BETA-ALANINAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 12(O4 S 2-) FORMUL 5 MES 3(C6 H13 N O4 S) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 12 2GH 2(C14 H29 N2 O7 P) FORMUL 24 HOH *323(H2 O) HELIX 1 AA1 THR A 19 LEU A 33 1 15 HELIX 2 AA2 ASP A 50 SER A 63 1 14 HELIX 3 AA3 GLU A 69 TYR A 76 1 8 HELIX 4 AA4 THR A 78 ALA A 83 1 6 HELIX 5 AA5 THR A 105 LYS A 114 1 10 HELIX 6 AA6 ASP A 135 HIS A 150 1 16 HELIX 7 AA7 ASP A 151 LEU A 153 5 3 HELIX 8 AA8 ASP A 188 SER A 202 1 15 HELIX 9 AA9 LEU A 232 VAL A 234 5 3 HELIX 10 AB1 ASP A 235 ALA A 255 1 21 HELIX 11 AB2 SER A 267 ALA A 279 1 13 HELIX 12 AB3 GLU A 281 SER A 286 1 6 HELIX 13 AB4 GLU A 287 LYS A 299 1 13 HELIX 14 AB5 LYS A 313 LYS A 315 5 3 HELIX 15 AB6 HIS A 325 HIS A 335 1 11 HELIX 16 AB7 ALA A 336 ALA A 339 5 4 HELIX 17 AB8 GLU A 343 SER A 360 1 18 HELIX 18 AB9 PRO A 405 ILE A 420 1 16 HELIX 19 AC1 PRO A 421 GLY A 424 5 4 HELIX 20 AC2 ILE A 425 VAL A 433 1 9 HELIX 21 AC3 LEU A 435 ARG A 439 5 5 HELIX 22 AC4 PHE A 458 ARG A 463 1 6 HELIX 23 AC5 GLY A 482 LEU A 486 5 5 HELIX 24 AC6 ARG A 519 GLU A 543 1 25 HELIX 25 AC7 THR B 19 GLY B 34 1 16 HELIX 26 AC8 ASP B 50 TYR B 64 1 15 HELIX 27 AC9 GLU B 69 TYR B 76 1 8 HELIX 28 AD1 THR B 78 LEU B 84 1 7 HELIX 29 AD2 THR B 105 LYS B 114 1 10 HELIX 30 AD3 ASP B 135 HIS B 150 1 16 HELIX 31 AD4 ASP B 151 LEU B 153 5 3 HELIX 32 AD5 ASP B 188 SER B 202 1 15 HELIX 33 AD6 LEU B 232 VAL B 234 5 3 HELIX 34 AD7 ASP B 235 ALA B 255 1 21 HELIX 35 AD8 SER B 267 ALA B 279 1 13 HELIX 36 AD9 GLU B 281 SER B 286 1 6 HELIX 37 AE1 GLU B 287 LYS B 299 1 13 HELIX 38 AE2 LYS B 313 LYS B 315 5 3 HELIX 39 AE3 HIS B 325 HIS B 335 1 11 HELIX 40 AE4 GLU B 343 SER B 360 1 18 HELIX 41 AE5 PRO B 405 LYS B 419 1 15 HELIX 42 AE6 ILE B 420 GLY B 424 5 5 HELIX 43 AE7 ILE B 425 VAL B 433 1 9 HELIX 44 AE8 LEU B 435 ARG B 439 5 5 HELIX 45 AE9 PHE B 458 ARG B 463 1 6 HELIX 46 AF1 ARG B 519 LYS B 544 1 26 SHEET 1 AA1 2 LEU A 66 LYS A 67 0 SHEET 2 AA1 2 LYS A 87 SER A 88 -1 O LYS A 87 N LYS A 67 SHEET 1 AA2 3 GLY A 100 VAL A 102 0 SHEET 2 AA2 3 ASN A 163 ASN A 168 -1 O ASN A 168 N GLY A 100 SHEET 3 AA2 3 MET A 155 GLU A 160 -1 N GLN A 158 O VAL A 165 SHEET 1 AA3 5 ASP A 177 ASN A 182 0 SHEET 2 AA3 5 VAL A 212 THR A 219 1 O GLN A 218 N TYR A 181 SHEET 3 AA3 5 GLY A 222 HIS A 230 -1 O PHE A 226 N ALA A 215 SHEET 4 AA3 5 ASN A 123 ARG A 130 -1 N GLN A 124 O ILE A 229 SHEET 5 AA3 5 THR A 468 ARG A 469 -1 O THR A 468 N TYR A 129 SHEET 1 AA4 6 VAL A 317 ARG A 323 0 SHEET 2 AA4 6 GLU A 506 SER A 514 -1 O LEU A 509 N ILE A 322 SHEET 3 AA4 6 LEU A 496 GLU A 503 -1 N THR A 499 O THR A 510 SHEET 4 AA4 6 VAL A 450 GLN A 457 1 N LEU A 455 O GLY A 500 SHEET 5 AA4 6 GLN A 364 GLY A 371 1 N HIS A 368 O VAL A 450 SHEET 6 AA4 6 SER A 392 ASP A 399 -1 O TYR A 394 N LEU A 369 SHEET 1 AA5 2 LEU B 66 LYS B 67 0 SHEET 2 AA5 2 LYS B 87 SER B 88 -1 O LYS B 87 N LYS B 67 SHEET 1 AA6 3 GLY B 100 ASN B 101 0 SHEET 2 AA6 3 VAL B 164 ASN B 168 -1 O ASN B 168 N GLY B 100 SHEET 3 AA6 3 MET B 155 HIS B 159 -1 N GLN B 158 O VAL B 165 SHEET 1 AA7 5 ASP B 177 ASN B 182 0 SHEET 2 AA7 5 VAL B 212 THR B 219 1 O GLN B 218 N TYR B 181 SHEET 3 AA7 5 GLY B 222 HIS B 230 -1 O ALA B 228 N LYS B 213 SHEET 4 AA7 5 ASN B 123 ARG B 130 -1 N LEU B 128 O LEU B 225 SHEET 5 AA7 5 THR B 468 ARG B 469 -1 O THR B 468 N TYR B 129 SHEET 1 AA8 6 VAL B 317 ARG B 323 0 SHEET 2 AA8 6 GLU B 506 SER B 514 -1 O PHE B 511 N MET B 320 SHEET 3 AA8 6 LEU B 496 GLU B 503 -1 N THR B 499 O THR B 510 SHEET 4 AA8 6 VAL B 450 GLN B 457 1 N LEU B 455 O GLY B 500 SHEET 5 AA8 6 GLN B 364 GLY B 371 1 N HIS B 368 O VAL B 450 SHEET 6 AA8 6 SER B 392 ASP B 399 -1 O LEU B 398 N ILE B 365 LINK OG SER A 51 PAX 2GH A 610 1555 1555 1.46 LINK NE2 HIS A 231 CAA 2GH A 610 1555 1555 1.45 LINK OG SER B 51 PAX 2GH B 608 1555 1555 1.44 LINK NE2 HIS B 231 CAA 2GH B 608 1555 1555 1.47 CISPEP 1 ALA A 404 PRO A 405 0 -7.73 CISPEP 2 ALA B 404 PRO B 405 0 -0.93 CRYST1 216.381 216.381 59.758 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004621 0.002668 0.000000 0.00000 SCALE2 0.000000 0.005336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016734 0.00000