HEADER TRANSPORT PROTEIN 19-APR-24 9BGZ TITLE ANCESTRAL UNCOUPLED ASPARTATE TRANSPORTER, APO CONDITIONS, HIGH- TITLE 2 AFFINITY STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: APO CONDITIONS, HIGH-AFFINITY STATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPORTER, ION-UNCOUPLED, ANCESTRAL, TRANSPORT PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR K.D.REDDY,O.BOUDKER REVDAT 1 12-MAR-25 9BGZ 0 JRNL AUTH K.D.REDDY,B.RASOOL,F.B.AKHER,N.KUTLESIC,S.PANT,O.BOUDKER JRNL TITL EVOLUTIONARY ANALYSIS REVEALS THE ORIGIN OF SODIUM COUPLING JRNL TITL 2 IN GLUTAMATE TRANSPORTERS. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 38106174 JRNL DOI 10.1101/2023.12.03.569786 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 63865 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9BGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1000283050. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ANCESTRAL UNCOUPLED ASPARTATE REMARK 245 TRANSPORTER, APO CONDITIONS, REMARK 245 HIGH-AFFINITY STATE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 900.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2100.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5029.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 101 REMARK 465 GLY A 102 REMARK 465 GLU A 103 REMARK 465 ILE A 104 REMARK 465 HIS A 105 REMARK 465 GLU A 106 REMARK 465 VAL A 107 REMARK 465 ALA A 108 REMARK 465 HIS A 109 REMARK 465 PRO A 110 REMARK 465 ASN A 111 REMARK 465 ALA A 112 REMARK 465 GLY A 329 REMARK 465 THR A 330 REMARK 465 ALA A 331 REMARK 465 GLY A 332 REMARK 465 VAL A 333 REMARK 465 PRO A 334 REMARK 465 GLY A 335 REMARK 465 ALA A 336 REMARK 465 GLU A 390 REMARK 465 LEU A 391 REMARK 465 ASN A 392 REMARK 465 ARG A 393 REMARK 465 GLU A 394 REMARK 465 MET A 395 REMARK 465 THR A 396 REMARK 465 ALA A 397 REMARK 465 THR A 398 REMARK 465 PRO A 399 REMARK 465 LEU A 400 REMARK 465 GLU A 401 REMARK 465 VAL A 402 REMARK 465 LEU A 403 REMARK 465 GLU A 404 REMARK 465 SER A 405 REMARK 465 LYS A 406 REMARK 465 THR A 407 REMARK 465 ILE A 408 REMARK 465 ALA A 409 REMARK 465 LEU A 410 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 121 -6.79 73.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-44527 RELATED DB: EMDB REMARK 900 ANCESTRAL UNCOUPLED ASPARTATE TRANSPORTER, APO CONDITIONS, HIGH- REMARK 900 AFFINITY STATE DBREF 9BGZ A 1 410 PDB 9BGZ 9BGZ 1 410 SEQRES 1 A 410 MET SER LEU TYR HIS LYS ILE LEU ILE GLY PHE VAL LEU SEQRES 2 A 410 GLY VAL ILE VAL GLY LEU ILE PHE GLY ASP LYS ALA GLU SEQRES 3 A 410 PHE ILE LYS PRO LEU GLY ASP ILE PHE LEU ARG LEU LEU SEQRES 4 A 410 LYS MET ILE VAL VAL PRO LEU VAL PHE SER THR ILE VAL SEQRES 5 A 410 THR GLY ILE ALA SER MET GLY ASP VAL LYS LYS LEU GLY SEQRES 6 A 410 ARG ILE GLY ALA LYS THR LEU ILE TYR TYR MET ILE THR SEQRES 7 A 410 THR THR LEU ALA VAL THR ILE GLY LEU ILE LEU ALA ASN SEQRES 8 A 410 ILE PHE LYS PRO GLY LYS GLY LEU SER LEU GLY GLU ILE SEQRES 9 A 410 HIS GLU VAL ALA HIS PRO ASN ALA PRO SER PHE THR GLU SEQRES 10 A 410 THR LEU LEU ASN MET ILE PRO THR ASN PRO PHE GLU ALA SEQRES 11 A 410 MET ALA GLU GLY ASN MET LEU GLN ILE ILE VAL PHE ALA SEQRES 12 A 410 ILE PHE PHE GLY ILE ALA LEU ALA LEU MET GLY GLU LYS SEQRES 13 A 410 ALA GLU PRO VAL LYS LYS PHE PHE ASP SER ALA SER GLU SEQRES 14 A 410 VAL MET PHE LYS ILE THR ASP ILE VAL MET LYS PHE ALA SEQRES 15 A 410 PRO TYR GLY VAL PHE ALA LEU MET ALA TRP THR VAL GLY SEQRES 16 A 410 LYS TYR GLY LEU ASP VAL LEU ALA PRO LEU GLY LYS LEU SEQRES 17 A 410 ILE LEU THR VAL TYR LEU GLY CYS ILE ILE HIS ILE LEU SEQRES 18 A 410 ILE VAL TYR THR LEU LEU LEU ARG PHE LEU CYS LYS ILE SEQRES 19 A 410 ASN PRO LEU ARG PHE PHE LYS LYS ILE LYS GLU ALA MET SEQRES 20 A 410 LEU VAL ALA PHE SER THR CYS SER SER ALA ALA THR LEU SEQRES 21 A 410 PRO VAL THR MET ARG VAL ALA GLU GLU LEU GLY VAL PRO SEQRES 22 A 410 GLU SER ILE ALA SER PHE THR LEU PRO LEU GLY ALA THR SEQRES 23 A 410 ILE ASN MET ASP GLY THR ALA LEU TYR GLN GLY VAL ALA SEQRES 24 A 410 ALA ILE PHE VAL ALA GLN ALA TYR GLY VAL GLU LEU THR SEQRES 25 A 410 LEU GLY GLN GLN LEU THR ILE VAL LEU THR ALA VAL LEU SEQRES 26 A 410 ALA SER ILE GLY THR ALA GLY VAL PRO GLY ALA GLY LEU SEQRES 27 A 410 VAL MET LEU THR MET VAL LEU THR SER VAL GLY LEU PRO SEQRES 28 A 410 LEU GLU GLY ILE ALA LEU ILE ALA GLY ILE ASP ARG ILE SEQRES 29 A 410 LEU ASP MET ALA ARG THR THR VAL ASN VAL THR GLY ASP SEQRES 30 A 410 LEU VAL ALA THR ALA ILE VAL ALA ARG THR GLU ASN GLU SEQRES 31 A 410 LEU ASN ARG GLU MET THR ALA THR PRO LEU GLU VAL LEU SEQRES 32 A 410 GLU SER LYS THR ILE ALA LEU HELIX 1 AA1 SER A 2 GLY A 22 1 21 HELIX 2 AA2 ASP A 23 PHE A 27 5 5 HELIX 3 AA3 ILE A 28 MET A 41 1 14 HELIX 4 AA4 ILE A 42 GLY A 59 1 18 HELIX 5 AA5 ASP A 60 PHE A 93 1 34 HELIX 6 AA6 SER A 114 LEU A 120 1 7 HELIX 7 AA7 ASN A 126 GLY A 134 1 9 HELIX 8 AA8 ASN A 135 GLY A 154 1 20 HELIX 9 AA9 ALA A 157 LYS A 180 1 24 HELIX 10 AB1 PHE A 181 TYR A 197 1 17 HELIX 11 AB2 GLY A 198 VAL A 223 1 26 HELIX 12 AB3 VAL A 223 LEU A 231 1 9 HELIX 13 AB4 ASN A 235 CYS A 254 1 20 HELIX 14 AB5 SER A 255 GLY A 271 1 17 HELIX 15 AB6 PRO A 273 ASN A 288 1 16 HELIX 16 AB7 MET A 289 TYR A 307 1 19 HELIX 17 AB8 THR A 312 SER A 327 1 16 HELIX 18 AB9 MET A 340 GLY A 349 1 10 HELIX 19 AC1 GLU A 353 GLY A 360 1 8 HELIX 20 AC2 ILE A 361 ASN A 389 1 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000