HEADER IMMUNE SYSTEM 19-APR-24 9BHB TITLE CRYO-EM STRUCTURE OF HUMAN MONOCLONAL ANTIBODY C74 TARGETING PFD1235W TITLE 2 (CIDRA1.6) PFEMP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C74 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C74 KAPPA CHAIN; COMPND 7 CHAIN: K; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ERYTHROCYTE MEMBRANE PROTEIN 1, PFEMP1; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 13 ORGANISM_TAXID: 36329; SOURCE 14 GENE: PF3D7_0425800; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ANTIBODY, PLASMODIUM, MONOCLONAL, NEUTRALIZING, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR S.S.R.RAGHAVAN,A.B.WARD REVDAT 5 04-JUN-25 9BHB 1 REMARK REVDAT 4 18-DEC-24 9BHB 1 JRNL REVDAT 3 04-DEC-24 9BHB 1 JRNL REVDAT 2 06-NOV-24 9BHB 1 REMARK REVDAT 1 02-OCT-24 9BHB 0 JRNL AUTH R.A.REYES,S.S.R.RAGHAVAN,N.K.HURLBURT,V.INTROINI,S.BOL, JRNL AUTH 2 I.H.KANA,R.W.JENSEN,E.MARTINEZ-SCHOLZE,M.GESTAL-MATO, JRNL AUTH 3 B.LOPEZ-GUTIERREZ,S.SANZ,C.BANCELLS,M.L.FERNANDEZ-QUINTERO, JRNL AUTH 4 J.R.LOEFFLER,J.A.FERGUSON,W.H.LEE,G.M.MARTIN,T.G.THEANDER, JRNL AUTH 5 J.P.A.LUSINGU,D.T.R.MINJA,I.SSEWANYANA,M.E.FEENEY, JRNL AUTH 6 B.GREENHOUSE,A.B.WARD,M.BERNABEU,M.PANCERA,L.TURNER, JRNL AUTH 7 E.M.BUNNIK,T.LAVSTSEN JRNL TITL BROADLY INHIBITORY ANTIBODIES TO SEVERE MALARIA VIRULENCE JRNL TITL 2 PROTEINS. JRNL REF NATURE V. 636 182 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 39567685 JRNL DOI 10.1038/S41586-024-08220-3 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 130000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9BHB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000283378. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF HUMAN MONOCLONAL C74 REMARK 245 WITH PFEMP1 PFD1235W N-TERMINAL REMARK 245 DOMAIN COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, K, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 SER H 113 REMARK 465 GLU K 1 REMARK 465 VAL K 110 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 GLU A 8 REMARK 465 GLY A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 LYS A 12 REMARK 465 THR A 13 REMARK 465 PRO A 14 REMARK 465 SER A 15 REMARK 465 LEU A 16 REMARK 465 THR A 17 REMARK 465 GLU A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 ASN A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 ASN A 25 REMARK 465 ILE A 26 REMARK 465 LEU A 27 REMARK 465 GLU A 28 REMARK 465 GLY A 29 REMARK 465 TYR A 30 REMARK 465 ALA A 31 REMARK 465 GLU A 32 REMARK 465 SER A 33 REMARK 465 ILE A 34 REMARK 465 LYS A 35 REMARK 465 GLU A 36 REMARK 465 GLN A 37 REMARK 465 ALA A 38 REMARK 465 SER A 39 REMARK 465 LYS A 40 REMARK 465 ASP A 41 REMARK 465 ALA A 42 REMARK 465 LYS A 43 REMARK 465 ILE A 44 REMARK 465 HIS A 45 REMARK 465 GLY A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 LEU A 49 REMARK 465 LYS A 50 REMARK 465 GLY A 51 REMARK 465 ASP A 52 REMARK 465 LEU A 53 REMARK 465 ALA A 54 REMARK 465 LYS A 55 REMARK 465 ALA A 56 REMARK 465 VAL A 57 REMARK 465 PHE A 58 REMARK 465 ARG A 59 REMARK 465 HIS A 60 REMARK 465 PRO A 61 REMARK 465 PHE A 62 REMARK 465 SER A 63 REMARK 465 ALA A 64 REMARK 465 TYR A 65 REMARK 465 ARG A 66 REMARK 465 PRO A 67 REMARK 465 ASN A 68 REMARK 465 TYR A 69 REMARK 465 GLY A 70 REMARK 465 ASN A 71 REMARK 465 PRO A 72 REMARK 465 CYS A 73 REMARK 465 GLU A 74 REMARK 465 LEU A 75 REMARK 465 ASP A 76 REMARK 465 TYR A 77 REMARK 465 ARG A 78 REMARK 465 PHE A 79 REMARK 465 HIS A 80 REMARK 465 THR A 81 REMARK 465 ASN A 82 REMARK 465 VAL A 83 REMARK 465 TRP A 84 REMARK 465 HIS A 85 REMARK 465 ARG A 86 REMARK 465 ASN A 87 REMARK 465 ALA A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 ARG A 91 REMARK 465 ASN A 92 REMARK 465 PRO A 93 REMARK 465 CYS A 94 REMARK 465 LEU A 95 REMARK 465 PHE A 96 REMARK 465 SER A 97 REMARK 465 ARG A 98 REMARK 465 ALA A 99 REMARK 465 LYS A 100 REMARK 465 ARG A 101 REMARK 465 PHE A 102 REMARK 465 SER A 103 REMARK 465 ASN A 104 REMARK 465 GLU A 105 REMARK 465 GLY A 106 REMARK 465 GLU A 107 REMARK 465 ALA A 108 REMARK 465 GLU A 109 REMARK 465 CYS A 110 REMARK 465 ASN A 111 REMARK 465 GLY A 112 REMARK 465 GLY A 113 REMARK 465 ILE A 114 REMARK 465 ILE A 115 REMARK 465 THR A 116 REMARK 465 GLY A 117 REMARK 465 ASN A 118 REMARK 465 LYS A 119 REMARK 465 GLY A 120 REMARK 465 GLU A 121 REMARK 465 CYS A 122 REMARK 465 GLY A 123 REMARK 465 ALA A 124 REMARK 465 CYS A 125 REMARK 465 ALA A 126 REMARK 465 PRO A 127 REMARK 465 TYR A 128 REMARK 465 ARG A 129 REMARK 465 ARG A 130 REMARK 465 ARG A 131 REMARK 465 HIS A 132 REMARK 465 ILE A 133 REMARK 465 CYS A 134 REMARK 465 ASP A 135 REMARK 465 TYR A 136 REMARK 465 ASN A 137 REMARK 465 LEU A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 ILE A 141 REMARK 465 ASN A 142 REMARK 465 GLU A 143 REMARK 465 ASN A 144 REMARK 465 ASN A 145 REMARK 465 ILE A 146 REMARK 465 ARG A 147 REMARK 465 ASN A 148 REMARK 465 THR A 149 REMARK 465 HIS A 150 REMARK 465 ASP A 151 REMARK 465 LEU A 152 REMARK 465 LEU A 153 REMARK 465 GLY A 154 REMARK 465 ASN A 155 REMARK 465 LEU A 156 REMARK 465 LEU A 157 REMARK 465 VAL A 158 REMARK 465 MET A 159 REMARK 465 ALA A 160 REMARK 465 ARG A 161 REMARK 465 SER A 162 REMARK 465 GLU A 163 REMARK 465 GLY A 164 REMARK 465 GLU A 165 REMARK 465 SER A 166 REMARK 465 ILE A 167 REMARK 465 VAL A 168 REMARK 465 LYS A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 GLU A 172 REMARK 465 TYR A 173 REMARK 465 THR A 174 REMARK 465 GLY A 175 REMARK 465 TYR A 176 REMARK 465 GLY A 177 REMARK 465 ILE A 178 REMARK 465 TYR A 179 REMARK 465 LYS A 180 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 ILE A 183 REMARK 465 CYS A 184 REMARK 465 THR A 185 REMARK 465 SER A 186 REMARK 465 LEU A 187 REMARK 465 ALA A 188 REMARK 465 ARG A 189 REMARK 465 SER A 190 REMARK 465 PHE A 191 REMARK 465 ALA A 192 REMARK 465 ASP A 193 REMARK 465 ILE A 194 REMARK 465 GLY A 195 REMARK 465 ASP A 196 REMARK 465 ILE A 197 REMARK 465 ILE A 198 REMARK 465 ARG A 199 REMARK 465 GLY A 200 REMARK 465 LYS A 201 REMARK 465 ASP A 202 REMARK 465 LEU A 203 REMARK 465 TYR A 204 REMARK 465 ARG A 205 REMARK 465 ARG A 206 REMARK 465 ASP A 207 REMARK 465 SER A 208 REMARK 465 ARG A 209 REMARK 465 THR A 210 REMARK 465 ASP A 211 REMARK 465 LYS A 212 REMARK 465 LEU A 213 REMARK 465 GLU A 214 REMARK 465 GLU A 215 REMARK 465 ASN A 216 REMARK 465 LEU A 217 REMARK 465 ARG A 218 REMARK 465 LYS A 219 REMARK 465 ILE A 220 REMARK 465 PHE A 221 REMARK 465 ALA A 222 REMARK 465 ASN A 223 REMARK 465 ILE A 224 REMARK 465 TYR A 225 REMARK 465 LYS A 226 REMARK 465 GLU A 227 REMARK 465 LEU A 228 REMARK 465 LYS A 229 REMARK 465 ASN A 230 REMARK 465 GLY A 231 REMARK 465 LYS A 232 REMARK 465 LYS A 233 REMARK 465 TRP A 234 REMARK 465 ALA A 235 REMARK 465 GLU A 236 REMARK 465 ALA A 237 REMARK 465 LYS A 238 REMARK 465 GLU A 239 REMARK 465 TYR A 240 REMARK 465 TYR A 241 REMARK 465 GLN A 242 REMARK 465 ASP A 243 REMARK 465 ASP A 244 REMARK 465 GLY A 245 REMARK 465 THR A 246 REMARK 465 GLY A 247 REMARK 465 ASN A 248 REMARK 465 TYR A 249 REMARK 465 TYR A 250 REMARK 465 LYS A 251 REMARK 465 LEU A 252 REMARK 465 ARG A 253 REMARK 465 GLU A 254 REMARK 465 ALA A 255 REMARK 465 TRP A 256 REMARK 465 TRP A 257 REMARK 465 ALA A 258 REMARK 465 LEU A 259 REMARK 465 ASN A 260 REMARK 465 ARG A 261 REMARK 465 LYS A 262 REMARK 465 ASP A 263 REMARK 465 VAL A 264 REMARK 465 TRP A 265 REMARK 465 LYS A 266 REMARK 465 ALA A 267 REMARK 465 LEU A 268 REMARK 465 THR A 269 REMARK 465 CYS A 270 REMARK 465 SER A 271 REMARK 465 ALA A 272 REMARK 465 PRO A 273 REMARK 465 ARG A 274 REMARK 465 ASP A 275 REMARK 465 ALA A 276 REMARK 465 GLN A 277 REMARK 465 TYR A 278 REMARK 465 PHE A 279 REMARK 465 ILE A 280 REMARK 465 LYS A 281 REMARK 465 SER A 282 REMARK 465 SER A 283 REMARK 465 VAL A 284 REMARK 465 ARG A 285 REMARK 465 ASP A 286 REMARK 465 GLN A 287 REMARK 465 THR A 288 REMARK 465 PHE A 289 REMARK 465 SER A 290 REMARK 465 ASN A 291 REMARK 465 ASP A 292 REMARK 465 TYR A 293 REMARK 465 CYS A 294 REMARK 465 GLY A 295 REMARK 465 HIS A 296 REMARK 465 GLY A 297 REMARK 465 GLU A 298 REMARK 465 HIS A 299 REMARK 465 GLU A 300 REMARK 465 VAL A 301 REMARK 465 LEU A 302 REMARK 465 THR A 303 REMARK 465 ASN A 304 REMARK 465 LEU A 305 REMARK 465 ASP A 306 REMARK 465 TYR A 307 REMARK 465 VAL A 308 REMARK 465 PRO A 309 REMARK 465 GLN A 310 REMARK 465 PHE A 311 REMARK 465 LEU A 312 REMARK 465 ARG A 313 REMARK 465 TRP A 314 REMARK 465 PHE A 315 REMARK 465 GLU A 316 REMARK 465 GLU A 317 REMARK 465 TRP A 318 REMARK 465 ALA A 319 REMARK 465 GLU A 320 REMARK 465 GLU A 321 REMARK 465 PHE A 322 REMARK 465 CYS A 323 REMARK 465 ARG A 324 REMARK 465 ILE A 325 REMARK 465 LYS A 326 REMARK 465 LYS A 327 REMARK 465 ILE A 328 REMARK 465 LYS A 329 REMARK 465 LEU A 330 REMARK 465 GLY A 331 REMARK 465 LYS A 332 REMARK 465 VAL A 333 REMARK 465 LYS A 334 REMARK 465 GLU A 335 REMARK 465 ALA A 336 REMARK 465 CYS A 337 REMARK 465 ARG A 338 REMARK 465 ASP A 339 REMARK 465 ASP A 340 REMARK 465 SER A 341 REMARK 465 LYS A 342 REMARK 465 LYS A 343 REMARK 465 LEU A 344 REMARK 465 TYR A 345 REMARK 465 CYS A 346 REMARK 465 SER A 347 REMARK 465 HIS A 348 REMARK 465 ASN A 349 REMARK 465 GLY A 350 REMARK 465 TYR A 351 REMARK 465 ASP A 352 REMARK 465 CYS A 353 REMARK 465 THR A 354 REMARK 465 LYS A 355 REMARK 465 THR A 356 REMARK 465 ILE A 357 REMARK 465 ARG A 358 REMARK 465 ASN A 359 REMARK 465 LYS A 360 REMARK 465 ASP A 361 REMARK 465 ILE A 362 REMARK 465 LEU A 363 REMARK 465 SER A 364 REMARK 465 ASP A 365 REMARK 465 ASN A 366 REMARK 465 PRO A 367 REMARK 465 LYS A 368 REMARK 465 CYS A 369 REMARK 465 THR A 370 REMARK 465 GLY A 371 REMARK 465 CYS A 372 REMARK 465 SER A 373 REMARK 465 VAL A 374 REMARK 465 LYS A 375 REMARK 465 CYS A 376 REMARK 465 LYS A 377 REMARK 465 VAL A 378 REMARK 465 TYR A 379 REMARK 465 GLU A 380 REMARK 465 LEU A 381 REMARK 465 TRP A 382 REMARK 465 LEU A 383 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 GLN A 386 REMARK 465 ARG A 387 REMARK 465 ASN A 388 REMARK 465 GLU A 389 REMARK 465 PHE A 390 REMARK 465 GLU A 391 REMARK 465 LYS A 392 REMARK 465 GLN A 393 REMARK 465 LYS A 394 REMARK 465 LYS A 395 REMARK 465 LYS A 396 REMARK 465 TYR A 397 REMARK 465 TYR A 398 REMARK 465 LYS A 399 REMARK 465 GLU A 400 REMARK 465 ILE A 401 REMARK 465 GLN A 402 REMARK 465 THR A 403 REMARK 465 TYR A 404 REMARK 465 THR A 405 REMARK 465 SER A 406 REMARK 465 LYS A 407 REMARK 465 ASP A 408 REMARK 465 ALA A 409 REMARK 465 LYS A 410 REMARK 465 THR A 411 REMARK 465 ASP A 412 REMARK 465 SER A 413 REMARK 465 ASN A 414 REMARK 465 ILE A 415 REMARK 465 ASN A 416 REMARK 465 ASN A 417 REMARK 465 GLU A 418 REMARK 465 TYR A 419 REMARK 465 TYR A 420 REMARK 465 LYS A 421 REMARK 465 GLU A 422 REMARK 465 PHE A 423 REMARK 465 TYR A 424 REMARK 465 ASP A 425 REMARK 465 LYS A 426 REMARK 465 LEU A 427 REMARK 465 LYS A 428 REMARK 465 ASN A 429 REMARK 465 GLU A 430 REMARK 465 GLY A 431 REMARK 465 TYR A 432 REMARK 465 GLU A 433 REMARK 465 THR A 434 REMARK 465 LEU A 435 REMARK 465 ASN A 436 REMARK 465 LYS A 437 REMARK 465 PHE A 438 REMARK 465 ILE A 439 REMARK 465 LYS A 440 REMARK 465 LEU A 441 REMARK 465 LEU A 442 REMARK 465 ASN A 443 REMARK 465 GLU A 444 REMARK 465 GLY A 445 REMARK 465 ARG A 446 REMARK 465 TYR A 447 REMARK 465 CYS A 448 REMARK 465 LYS A 449 REMARK 465 GLU A 450 REMARK 465 LYS A 451 REMARK 465 ILE A 452 REMARK 465 SER A 453 REMARK 465 GLY A 454 REMARK 465 GLU A 455 REMARK 465 ARG A 456 REMARK 465 ASN A 457 REMARK 465 ILE A 458 REMARK 465 ASP A 459 REMARK 465 PHE A 460 REMARK 465 THR A 461 REMARK 465 MET A 462 REMARK 465 THR A 463 REMARK 465 GLY A 464 REMARK 465 ASP A 465 REMARK 465 LYS A 466 REMARK 465 ASP A 467 REMARK 465 ALA A 468 REMARK 465 PHE A 469 REMARK 465 TYR A 470 REMARK 465 ARG A 471 REMARK 465 SER A 472 REMARK 465 ASP A 473 REMARK 465 TYR A 474 REMARK 465 CYS A 475 REMARK 465 GLN A 476 REMARK 465 ILE A 477 REMARK 465 CYS A 478 REMARK 465 PRO A 479 REMARK 465 GLU A 480 REMARK 465 CYS A 481 REMARK 465 GLY A 482 REMARK 465 VAL A 483 REMARK 465 GLN A 484 REMARK 465 CYS A 485 REMARK 465 SER A 486 REMARK 465 GLY A 487 REMARK 465 THR A 488 REMARK 465 THR A 489 REMARK 465 CYS A 490 REMARK 465 THR A 491 REMARK 465 PRO A 492 REMARK 465 LYS A 493 REMARK 465 LYS A 494 REMARK 465 VAL A 495 REMARK 465 ILE A 496 REMARK 465 HIS A 497 REMARK 465 PRO A 498 REMARK 465 ASN A 499 REMARK 465 CYS A 500 REMARK 465 LYS A 501 REMARK 465 ASP A 502 REMARK 465 LYS A 503 REMARK 465 GLU A 504 REMARK 465 THR A 505 REMARK 465 TYR A 506 REMARK 465 GLU A 507 REMARK 465 PRO A 508 REMARK 465 GLY A 509 REMARK 465 ASP A 510 REMARK 465 ALA A 511 REMARK 465 LYS A 512 REMARK 465 THR A 513 REMARK 465 THR A 514 REMARK 465 ASP A 515 REMARK 465 ILE A 516 REMARK 465 THR A 517 REMARK 465 VAL A 518 REMARK 465 LEU A 519 REMARK 465 TYR A 520 REMARK 465 SER A 521 REMARK 465 GLY A 522 REMARK 465 ASP A 523 REMARK 465 GLU A 524 REMARK 465 GLU A 525 REMARK 465 GLY A 526 REMARK 465 ASP A 527 REMARK 465 ILE A 528 REMARK 465 ALA A 529 REMARK 465 GLN A 530 REMARK 465 LYS A 531 REMARK 465 LEU A 532 REMARK 465 GLN A 533 REMARK 465 ASP A 534 REMARK 465 PHE A 535 REMARK 465 CYS A 536 REMARK 465 ASN A 537 REMARK 465 ASP A 538 REMARK 465 LYS A 539 REMARK 465 ASN A 540 REMARK 465 LYS A 541 REMARK 465 GLU A 542 REMARK 465 ASN A 543 REMARK 465 ASP A 544 REMARK 465 GLU A 545 REMARK 465 ASN A 546 REMARK 465 TYR A 547 REMARK 465 GLU A 548 REMARK 465 LYS A 549 REMARK 465 TRP A 550 REMARK 465 GLN A 551 REMARK 465 CYS A 552 REMARK 465 TYR A 553 REMARK 465 TYR A 554 REMARK 465 LYS A 555 REMARK 465 SER A 556 REMARK 465 SER A 557 REMARK 465 GLU A 558 REMARK 465 ILE A 559 REMARK 465 ASN A 560 REMARK 465 LYS A 561 REMARK 465 CYS A 562 REMARK 465 GLN A 563 REMARK 465 MET A 564 REMARK 465 THR A 565 REMARK 465 PRO A 566 REMARK 465 SER A 567 REMARK 465 SER A 568 REMARK 465 HIS A 569 REMARK 465 LYS A 570 REMARK 465 VAL A 571 REMARK 465 PRO A 572 REMARK 465 LYS A 573 REMARK 465 HIS A 574 REMARK 465 GLY A 575 REMARK 465 TYR A 576 REMARK 465 ILE A 577 REMARK 465 MET A 578 REMARK 465 ASP A 601 REMARK 465 LEU A 602 REMARK 465 THR A 603 REMARK 465 ASN A 604 REMARK 465 CYS A 605 REMARK 465 ILE A 606 REMARK 465 ASN A 607 REMARK 465 ASN A 608 REMARK 465 THR A 609 REMARK 465 ASN A 610 REMARK 465 VAL A 611 REMARK 465 THR A 612 REMARK 465 ASP A 613 REMARK 465 CYS A 614 REMARK 465 LYS A 615 REMARK 465 ASN A 616 REMARK 465 ASP A 617 REMARK 465 CYS A 618 REMARK 465 ASN A 619 REMARK 465 THR A 620 REMARK 465 THR A 641 REMARK 465 ILE A 642 REMARK 465 TYR A 643 REMARK 465 LYS A 644 REMARK 465 ASN A 645 REMARK 465 GLU A 646 REMARK 465 ASN A 647 REMARK 465 GLY A 648 REMARK 465 ASN A 649 REMARK 465 THR A 650 REMARK 465 ASN A 651 REMARK 465 ASN A 652 REMARK 465 TYR A 653 REMARK 465 LEU A 694 REMARK 465 LYS A 695 REMARK 465 ASN A 696 REMARK 465 GLY A 697 REMARK 465 THR A 698 REMARK 465 LYS A 699 REMARK 465 ASP A 700 REMARK 465 SER A 701 REMARK 465 GLU A 702 REMARK 465 CYS A 719 REMARK 465 ILE A 720 REMARK 465 ASP A 721 REMARK 465 ASN A 722 REMARK 465 ASN A 723 REMARK 465 SER A 724 REMARK 465 LYS A 725 REMARK 465 ASP A 726 REMARK 465 SER A 727 REMARK 465 CYS A 728 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 43 -31.54 -130.12 REMARK 500 ARG H 100B 63.50 -100.54 REMARK 500 ALA K 9 -135.40 50.89 REMARK 500 ASN A 659 -62.10 -120.46 REMARK 500 HIS A 660 48.86 -143.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-44539 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN MONOCLONAL ANTIBODY C74 TARGETING REMARK 900 PFD1235W (CIDRA1.6) PFEMP1 DBREF 9BHB H 1 113 PDB 9BHB 9BHB 1 113 DBREF 9BHB K 1 110 PDB 9BHB 9BHB 1 110 DBREF 9BHB A 1 728 UNP Q8I098 Q8I098_PLAF7 1 728 SEQRES 1 H 121 GLU VAL GLN LEU VAL GLN SER GLY GLY ALA LEU VAL ARG SEQRES 2 H 121 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 121 PHE ASP PHE SER ASP PHE GLU MET ASN TRP VAL ARG GLN SEQRES 4 H 121 ALA PRO GLY LYS GLY LEU GLU TRP ILE SER TYR ILE SER SEQRES 5 H 121 LYS ILE SER ALA ALA SER PHE TYR ALA ASP SER VAL GLU SEQRES 6 H 121 GLY ARG PHE THR ILE SER ARG ASP ASN THR LYS ASN LEU SEQRES 7 H 121 LEU TRP LEU GLU MET THR SER LEU ARG ASP GLU ASP THR SEQRES 8 H 121 ALA VAL TYR TYR CYS ALA ARG ASP LEU PRO GLY TYR LEU SEQRES 9 H 121 GLU ARG VAL PHE ASP LEU TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 121 SER VAL SER SER SEQRES 1 K 113 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 K 113 SER PRO GLY GLU ASP ALA THR LEU SER CYS ARG ALA SER SEQRES 3 K 113 GLN SER VAL GLY SER ALA LEU ALA TRP TYR GLN HIS ARG SEQRES 4 K 113 PRO GLY GLN SER PRO ARG LEU LEU ILE TYR ASP ALA SER SEQRES 5 K 113 THR ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 K 113 GLY SER GLY THR GLU PHE THR LEU THR VAL SER SER LEU SEQRES 7 K 113 THR SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLU TYR SEQRES 8 K 113 LYS ASN SER VAL PRO PRO THR TRP THR PHE GLY GLN GLY SEQRES 9 K 113 THR LYS VAL GLU ILE LYS ARG THR VAL SEQRES 1 A 728 MET GLY ASN ALA SER SER SER GLU GLY GLU ALA LYS THR SEQRES 2 A 728 PRO SER LEU THR GLU SER HIS ASN SER ALA ARG ASN ILE SEQRES 3 A 728 LEU GLU GLY TYR ALA GLU SER ILE LYS GLU GLN ALA SER SEQRES 4 A 728 LYS ASP ALA LYS ILE HIS GLY HIS HIS LEU LYS GLY ASP SEQRES 5 A 728 LEU ALA LYS ALA VAL PHE ARG HIS PRO PHE SER ALA TYR SEQRES 6 A 728 ARG PRO ASN TYR GLY ASN PRO CYS GLU LEU ASP TYR ARG SEQRES 7 A 728 PHE HIS THR ASN VAL TRP HIS ARG ASN ALA GLU ASP ARG SEQRES 8 A 728 ASN PRO CYS LEU PHE SER ARG ALA LYS ARG PHE SER ASN SEQRES 9 A 728 GLU GLY GLU ALA GLU CYS ASN GLY GLY ILE ILE THR GLY SEQRES 10 A 728 ASN LYS GLY GLU CYS GLY ALA CYS ALA PRO TYR ARG ARG SEQRES 11 A 728 ARG HIS ILE CYS ASP TYR ASN LEU HIS HIS ILE ASN GLU SEQRES 12 A 728 ASN ASN ILE ARG ASN THR HIS ASP LEU LEU GLY ASN LEU SEQRES 13 A 728 LEU VAL MET ALA ARG SER GLU GLY GLU SER ILE VAL LYS SEQRES 14 A 728 SER HIS GLU TYR THR GLY TYR GLY ILE TYR LYS SER GLY SEQRES 15 A 728 ILE CYS THR SER LEU ALA ARG SER PHE ALA ASP ILE GLY SEQRES 16 A 728 ASP ILE ILE ARG GLY LYS ASP LEU TYR ARG ARG ASP SER SEQRES 17 A 728 ARG THR ASP LYS LEU GLU GLU ASN LEU ARG LYS ILE PHE SEQRES 18 A 728 ALA ASN ILE TYR LYS GLU LEU LYS ASN GLY LYS LYS TRP SEQRES 19 A 728 ALA GLU ALA LYS GLU TYR TYR GLN ASP ASP GLY THR GLY SEQRES 20 A 728 ASN TYR TYR LYS LEU ARG GLU ALA TRP TRP ALA LEU ASN SEQRES 21 A 728 ARG LYS ASP VAL TRP LYS ALA LEU THR CYS SER ALA PRO SEQRES 22 A 728 ARG ASP ALA GLN TYR PHE ILE LYS SER SER VAL ARG ASP SEQRES 23 A 728 GLN THR PHE SER ASN ASP TYR CYS GLY HIS GLY GLU HIS SEQRES 24 A 728 GLU VAL LEU THR ASN LEU ASP TYR VAL PRO GLN PHE LEU SEQRES 25 A 728 ARG TRP PHE GLU GLU TRP ALA GLU GLU PHE CYS ARG ILE SEQRES 26 A 728 LYS LYS ILE LYS LEU GLY LYS VAL LYS GLU ALA CYS ARG SEQRES 27 A 728 ASP ASP SER LYS LYS LEU TYR CYS SER HIS ASN GLY TYR SEQRES 28 A 728 ASP CYS THR LYS THR ILE ARG ASN LYS ASP ILE LEU SER SEQRES 29 A 728 ASP ASN PRO LYS CYS THR GLY CYS SER VAL LYS CYS LYS SEQRES 30 A 728 VAL TYR GLU LEU TRP LEU ARG ASN GLN ARG ASN GLU PHE SEQRES 31 A 728 GLU LYS GLN LYS LYS LYS TYR TYR LYS GLU ILE GLN THR SEQRES 32 A 728 TYR THR SER LYS ASP ALA LYS THR ASP SER ASN ILE ASN SEQRES 33 A 728 ASN GLU TYR TYR LYS GLU PHE TYR ASP LYS LEU LYS ASN SEQRES 34 A 728 GLU GLY TYR GLU THR LEU ASN LYS PHE ILE LYS LEU LEU SEQRES 35 A 728 ASN GLU GLY ARG TYR CYS LYS GLU LYS ILE SER GLY GLU SEQRES 36 A 728 ARG ASN ILE ASP PHE THR MET THR GLY ASP LYS ASP ALA SEQRES 37 A 728 PHE TYR ARG SER ASP TYR CYS GLN ILE CYS PRO GLU CYS SEQRES 38 A 728 GLY VAL GLN CYS SER GLY THR THR CYS THR PRO LYS LYS SEQRES 39 A 728 VAL ILE HIS PRO ASN CYS LYS ASP LYS GLU THR TYR GLU SEQRES 40 A 728 PRO GLY ASP ALA LYS THR THR ASP ILE THR VAL LEU TYR SEQRES 41 A 728 SER GLY ASP GLU GLU GLY ASP ILE ALA GLN LYS LEU GLN SEQRES 42 A 728 ASP PHE CYS ASN ASP LYS ASN LYS GLU ASN ASP GLU ASN SEQRES 43 A 728 TYR GLU LYS TRP GLN CYS TYR TYR LYS SER SER GLU ILE SEQRES 44 A 728 ASN LYS CYS GLN MET THR PRO SER SER HIS LYS VAL PRO SEQRES 45 A 728 LYS HIS GLY TYR ILE MET SER PHE TYR ALA PHE PHE ASP SEQRES 46 A 728 LEU TRP VAL LYS ASN LEU LEU ILE ASP SER ILE ASN TRP SEQRES 47 A 728 LYS ASN ASP LEU THR ASN CYS ILE ASN ASN THR ASN VAL SEQRES 48 A 728 THR ASP CYS LYS ASN ASP CYS ASN THR ASN CYS LYS CYS SEQRES 49 A 728 PHE GLU ASN TRP ALA LYS THR LYS GLU ASN GLU TRP LYS SEQRES 50 A 728 LYS VAL LYS THR ILE TYR LYS ASN GLU ASN GLY ASN THR SEQRES 51 A 728 ASN ASN TYR TYR LYS LYS LEU ASN ASN HIS PHE GLN GLY SEQRES 52 A 728 TYR PHE PHE HIS VAL MET LYS GLU LEU ASN LYS GLU GLU SEQRES 53 A 728 LYS TRP TYR LYS LEU MET GLU ASP LEU LYS GLU LYS ILE SEQRES 54 A 728 ASP SER SER ASN LEU LYS ASN GLY THR LYS ASP SER GLU SEQRES 55 A 728 GLY ALA ILE LYS VAL LEU PHE ASP HIS LEU LYS ASP ILE SEQRES 56 A 728 ALA GLU ARG CYS ILE ASP ASN ASN SER LYS ASP SER CYS HELIX 1 AA1 ASP H 28 PHE H 32 5 5 HELIX 2 AA2 ARG H 83 THR H 87 5 5 HELIX 3 AA3 THR K 79 PHE K 83 5 5 HELIX 4 AA4 PHE A 580 ASN A 600 1 21 HELIX 5 AA5 CYS A 622 LYS A 640 1 19 HELIX 6 AA6 TYR A 664 LEU A 672 1 9 HELIX 7 AA7 LYS A 674 ASN A 693 1 20 HELIX 8 AA8 ALA A 704 GLU A 717 1 14 SHEET 1 AA1 2 GLN H 3 GLN H 6 0 SHEET 2 AA1 2 CYS H 22 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 1 AA2 6 ALA H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O SER H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 MET H 34 ALA H 40 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 SER H 57 TYR H 59 -1 O PHE H 58 N TYR H 50 SHEET 1 AA3 4 ALA H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O SER H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 PHE H 100D TRP H 103 -1 O ASP H 101 N ARG H 94 SHEET 1 AA4 3 SER H 17 LEU H 20 0 SHEET 2 AA4 3 LEU H 77 THR H 82A-1 O MET H 82 N LEU H 18 SHEET 3 AA4 3 THR H 68 ASP H 72 -1 N SER H 70 O TRP H 79 SHEET 1 AA5 2 LEU K 4 THR K 5 0 SHEET 2 AA5 2 ARG K 24 ALA K 25 -1 O ARG K 24 N THR K 5 SHEET 1 AA6 5 THR K 10 SER K 12 0 SHEET 2 AA6 5 THR K 102 GLU K 105 1 O GLU K 105 N LEU K 11 SHEET 3 AA6 5 VAL K 85 GLU K 90 -1 N TYR K 86 O THR K 102 SHEET 4 AA6 5 LEU K 33 HIS K 38 -1 N ALA K 34 O GLN K 89 SHEET 5 AA6 5 PRO K 44 ILE K 48 -1 O ILE K 48 N TRP K 35 SHEET 1 AA7 3 ALA K 19 THR K 20 0 SHEET 2 AA7 3 THR K 72 VAL K 75 -1 O VAL K 75 N ALA K 19 SHEET 3 AA7 3 PHE K 62 SER K 65 -1 N SER K 63 O THR K 74 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS K 23 CYS K 88 1555 1555 2.03 CISPEP 1 VAL K 95 PRO K 95A 0 -1.15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 932 SER H 112 TER 1774 THR K 109 TER 2629 ARG A 718 CONECT 145 742 CONECT 742 145 CONECT 1084 1576 CONECT 1576 1084 MASTER 765 0 0 8 25 0 0 6 2626 3 4 75 END