HEADER HYDROLASE 26-APR-24 9BK4 TITLE CRYSTAL STRUCTURE OF RIDA FAMILY PROTEIN PA5083 FROM PSEUDOMONAS TITLE 2 AERUGINOSA WITH PYRUVIC ACID BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIDA FAMILY PROTEIN PA5083; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRANSLATION INITIATION INHIBITOR; COMPND 5 EC: 3.5.4.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: YABJ_3, CAZ10_01035, GNQ48_03865, GUL26_07970, IPC1295_08400, SOURCE 5 IPC737_05390, NCTC13621_05579, PA52TS2_0667; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS RIDA PROTEIN, DEAMINATION, STRESS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,L.CHEN,J.P.ROSE,B.C.WANG REVDAT 1 04-SEP-24 9BK4 0 JRNL AUTH D.ZHOU,L.CHEN,J.P.ROSE,B.C.WANG JRNL TITL CRYSTAL STRUCTURE OF RIDA FAMILY PROTEIN PA5083 FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA WITH PYRUVIC ACID BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21_5207: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 18793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7200 - 4.8900 0.98 1397 154 0.2057 0.2148 REMARK 3 2 4.8900 - 3.8800 0.99 1324 147 0.1652 0.1873 REMARK 3 3 3.8800 - 3.3900 1.00 1325 146 0.1722 0.2052 REMARK 3 4 3.3900 - 3.0800 0.99 1308 145 0.1890 0.2016 REMARK 3 5 3.0800 - 2.8600 0.99 1283 143 0.1924 0.2369 REMARK 3 6 2.8600 - 2.6900 0.99 1294 145 0.1793 0.2345 REMARK 3 7 2.6900 - 2.5600 0.99 1298 143 0.1966 0.2503 REMARK 3 8 2.5500 - 2.4400 0.99 1283 142 0.1866 0.2218 REMARK 3 9 2.4400 - 2.3500 0.99 1267 143 0.1749 0.2381 REMARK 3 10 2.3500 - 2.2700 1.00 1304 146 0.1912 0.2384 REMARK 3 11 2.2700 - 2.2000 1.00 1281 140 0.1881 0.2512 REMARK 3 12 2.2000 - 2.1300 1.00 1292 145 0.1871 0.2595 REMARK 3 13 2.1300 - 2.0800 0.98 1258 140 0.1798 0.2108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1806 REMARK 3 ANGLE : 0.894 2458 REMARK 3 CHIRALITY : 0.052 296 REMARK 3 PLANARITY : 0.006 320 REMARK 3 DIHEDRAL : 18.666 656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9BK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000283560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 37.70200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 21.76726 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 93.20200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 37.70200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 21.76726 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 93.20200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 37.70200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 21.76726 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.20200 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 37.70200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 21.76726 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.20200 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 37.70200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 21.76726 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.20200 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 37.70200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 21.76726 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.20200 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 43.53452 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 186.40400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 43.53452 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 186.40400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 43.53452 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 186.40400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 43.53452 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 186.40400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 43.53452 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 186.40400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 43.53452 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 186.40400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 130.60356 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -113.10600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 65.30178 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 37.70200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 65.30178 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -37.70200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 65.30178 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 317 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 321 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 373 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 374 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 422 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 443 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 334 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 335 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 357 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 419 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 428 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 430 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 443 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 444 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 318 O HOH B 366 1.54 REMARK 500 O HOH B 390 O HOH B 401 1.57 REMARK 500 O HOH A 409 O HOH A 432 1.72 REMARK 500 O HOH B 307 O HOH B 403 1.72 REMARK 500 O GLY B 30 O HOH B 301 1.73 REMARK 500 O HOH A 385 O HOH A 411 1.74 REMARK 500 OE2 GLU A 2 O HOH A 301 1.75 REMARK 500 O HOH A 378 O HOH A 398 1.78 REMARK 500 O HOH B 400 O HOH B 434 1.80 REMARK 500 O ALA B 32 O HOH B 302 1.90 REMARK 500 O HOH B 310 O HOH B 389 1.90 REMARK 500 O HOH B 311 O HOH B 333 1.96 REMARK 500 O HOH A 413 O HOH A 429 1.98 REMARK 500 OE1 GLU B 99 O HOH B 303 2.00 REMARK 500 NH1 ARG A 5 O HOH A 302 2.02 REMARK 500 OE1 GLU A 99 O HOH A 303 2.04 REMARK 500 O HOH A 337 O HOH A 386 2.07 REMARK 500 O HOH B 380 O HOH B 407 2.07 REMARK 500 O HOH B 313 O HOH B 343 2.07 REMARK 500 O GLY A 116 O HOH A 304 2.08 REMARK 500 OE1 GLU B 58 O HOH B 304 2.08 REMARK 500 OE2 GLU A 79 O HOH A 305 2.11 REMARK 500 O HOH B 304 O HOH B 386 2.11 REMARK 500 O HOH B 329 O HOH B 408 2.12 REMARK 500 O HOH B 362 O HOH B 401 2.13 REMARK 500 O HOH B 391 O HOH B 410 2.15 REMARK 500 NE2 GLN B 83 O HOH B 305 2.16 REMARK 500 OD2 ASP B 47 O HOH B 306 2.17 REMARK 500 O HOH B 312 O HOH B 366 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 333 O HOH B 333 18655 1.87 REMARK 500 O HOH B 398 O HOH B 404 2665 1.87 REMARK 500 O HOH B 336 O HOH B 406 2665 1.95 REMARK 500 O HOH B 389 O HOH B 417 18655 2.01 REMARK 500 O HOH B 333 O HOH B 409 18655 2.03 REMARK 500 O HOH A 382 O HOH B 422 16455 2.05 REMARK 500 O HOH A 393 O HOH A 406 2675 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 7 70.36 54.69 REMARK 500 SER A 55 -163.67 -122.63 REMARK 500 ALA B 7 70.98 56.48 REMARK 500 ASP B 19 -125.16 59.93 REMARK 500 GLN B 31 -33.68 -159.68 REMARK 500 SER B 55 -165.88 -119.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 30 GLN B 31 -148.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9BJY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIDA FAMILY PROTEIN PA5083 FROM PSEUDOMONAS REMARK 900 AERUGINOSA WITH TMAO BOUND REMARK 900 RELATED ID: 9BJV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PA5083 FROM PSEUDOMONAS REMARK 900 AERUGINOSA SULFUR SAD PHASED REMARK 900 RELATED ID: 9BJW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIDA FAMILY PROTEIN PA5083 FROM PSEUDOMONAS REMARK 900 AERUGINOSA DBREF1 9BK4 A 1 116 UNP A0A069Q0R8_PSEAI DBREF2 9BK4 A A0A069Q0R8 1 116 DBREF1 9BK4 B 1 116 UNP A0A069Q0R8_PSEAI DBREF2 9BK4 B A0A069Q0R8 1 116 SEQRES 1 A 116 MET GLU PRO THR ARG ILE ALA THR ASN ASP ARG LEU SER SEQRES 2 A 116 ALA ALA VAL CYS PHE ASP ALA LEU VAL PHE LEU SER GLY SEQRES 3 A 116 GLN VAL PRO GLY GLN ALA GLU ASP ILE HIS GLY GLN THR SEQRES 4 A 116 ARG GLU VAL LEU ALA LYS ILE ASP ALA LEU LEU ALA GLU SEQRES 5 A 116 ALA GLY SER ARG LYS GLU ARG ILE LEU SER ALA THR ILE SEQRES 6 A 116 TYR LEU LYS ASP ILE ALA ARG ASP PHE ALA ALA LEU ASN SEQRES 7 A 116 GLU VAL TRP THR GLN TRP LEU PRO THR GLY GLN ALA PRO SEQRES 8 A 116 SER ARG THR THR VAL GLN ALA GLU LEU ALA ARG PRO SER SEQRES 9 A 116 VAL LEU VAL GLU ILE THR VAL VAL ALA ALA ARG GLY SEQRES 1 B 116 MET GLU PRO THR ARG ILE ALA THR ASN ASP ARG LEU SER SEQRES 2 B 116 ALA ALA VAL CYS PHE ASP ALA LEU VAL PHE LEU SER GLY SEQRES 3 B 116 GLN VAL PRO GLY GLN ALA GLU ASP ILE HIS GLY GLN THR SEQRES 4 B 116 ARG GLU VAL LEU ALA LYS ILE ASP ALA LEU LEU ALA GLU SEQRES 5 B 116 ALA GLY SER ARG LYS GLU ARG ILE LEU SER ALA THR ILE SEQRES 6 B 116 TYR LEU LYS ASP ILE ALA ARG ASP PHE ALA ALA LEU ASN SEQRES 7 B 116 GLU VAL TRP THR GLN TRP LEU PRO THR GLY GLN ALA PRO SEQRES 8 B 116 SER ARG THR THR VAL GLN ALA GLU LEU ALA ARG PRO SER SEQRES 9 B 116 VAL LEU VAL GLU ILE THR VAL VAL ALA ALA ARG GLY HET PYR A 201 9 HET SO4 A 202 5 HET PYR B 201 9 HETNAM PYR PYRUVIC ACID HETNAM SO4 SULFATE ION FORMUL 3 PYR 2(C3 H4 O3) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *289(H2 O) HELIX 1 AA1 ASP A 34 ALA A 53 1 20 HELIX 2 AA2 ARG A 56 GLU A 58 5 3 HELIX 3 AA3 ASP A 69 LEU A 85 1 17 HELIX 4 AA4 ASP B 34 ALA B 53 1 20 HELIX 5 AA5 ARG B 56 GLU B 58 5 3 HELIX 6 AA6 ASP B 69 LEU B 85 1 17 SHEET 1 AA1 6 THR A 4 THR A 8 0 SHEET 2 AA1 6 SER A 13 PHE A 18 -1 O CYS A 17 N THR A 4 SHEET 3 AA1 6 LEU A 21 LEU A 24 -1 O PHE A 23 N VAL A 16 SHEET 4 AA1 6 VAL A 107 ALA A 114 -1 O ALA A 113 N VAL A 22 SHEET 5 AA1 6 ILE A 60 LEU A 67 -1 N TYR A 66 O GLU A 108 SHEET 6 AA1 6 SER A 92 GLN A 97 1 O THR A 94 N ILE A 65 SHEET 1 AA2 6 THR B 4 THR B 8 0 SHEET 2 AA2 6 SER B 13 PHE B 18 -1 O CYS B 17 N THR B 4 SHEET 3 AA2 6 LEU B 21 LEU B 24 -1 O PHE B 23 N VAL B 16 SHEET 4 AA2 6 VAL B 107 ALA B 114 -1 O ALA B 113 N VAL B 22 SHEET 5 AA2 6 ILE B 60 LEU B 67 -1 N TYR B 66 O GLU B 108 SHEET 6 AA2 6 SER B 92 GLN B 97 1 O THR B 94 N ILE B 65 CRYST1 75.404 75.404 279.606 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013262 0.007657 0.000000 0.00000 SCALE2 0.000000 0.015314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003576 0.00000