HEADER HYDROLASE 27-APR-24 9BKC TITLE CRYSTAL STRUCTURE OF RID FAMILY PROTEIN PFL1385 FROM PSEUDOMONAS TITLE 2 FLUORESCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RID FAMILY PROTEIN PFL1385; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 GENE: PFL_1385; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS RID FAMILY PROTEIN, DEAMINATION, STRESS, HYDROLASE, ENDORIBONUCLEASE KEYWDS 2 L-PSP FAMILY PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,L.CHEN,J.P.ROSE,B.C.WANG REVDAT 1 04-SEP-24 9BKC 0 JRNL AUTH D.ZHOU,L.CHEN,J.P.ROSE,B.C.WANG JRNL TITL CRYSTAL STRUCTURE OF RID FAMILY PROTEIN PFL1385 FROM JRNL TITL 2 PSEUDOMONAS FLUORESCENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 29451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5700 - 5.9900 1.00 2037 145 0.1793 0.2025 REMARK 3 2 5.9900 - 4.7600 1.00 2023 143 0.1956 0.2178 REMARK 3 3 4.7600 - 4.1600 1.00 1993 147 0.1801 0.2249 REMARK 3 4 4.1600 - 3.7800 1.00 2029 144 0.1845 0.2319 REMARK 3 5 3.7800 - 3.5100 1.00 1984 142 0.2006 0.2388 REMARK 3 6 3.5100 - 3.3000 1.00 1963 147 0.2045 0.2553 REMARK 3 7 3.3000 - 3.1400 1.00 2024 147 0.2192 0.2554 REMARK 3 8 3.1400 - 3.0000 0.99 1965 145 0.2160 0.2851 REMARK 3 9 3.0000 - 2.8900 0.99 1966 143 0.2161 0.2755 REMARK 3 10 2.8800 - 2.7900 0.98 1959 146 0.2253 0.3000 REMARK 3 11 2.7900 - 2.7000 0.97 1932 140 0.2452 0.2993 REMARK 3 12 2.7000 - 2.6200 0.95 1890 133 0.2326 0.3216 REMARK 3 13 2.6200 - 2.5500 0.93 1845 132 0.2221 0.2574 REMARK 3 14 2.5500 - 2.4900 0.93 1855 132 0.2378 0.3295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.306 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.369 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5785 REMARK 3 ANGLE : 1.132 7876 REMARK 3 CHIRALITY : 0.062 965 REMARK 3 PLANARITY : 0.008 1030 REMARK 3 DIHEDRAL : 16.420 2148 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and resid 39 through 164) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and resid 39 through 164) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "E" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 6 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "F" and resid 39 through 164) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9BKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-24. REMARK 100 THE DEPOSITION ID IS D_1000283587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29451 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.46 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.59 REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 1.5 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.89000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.83500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.94500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 84.01000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 30.94500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 VAL A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 PHE A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 TRP A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 ILE A 24 REMARK 465 GLN A 25 REMARK 465 ARG A 26 REMARK 465 VAL A 27 REMARK 465 PRO A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 TYR A 31 REMARK 465 PRO A 32 REMARK 465 ASN A 33 REMARK 465 SER A 34 REMARK 465 PRO A 35 REMARK 465 ILE A 36 REMARK 465 LEU A 37 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 LYS B 4 REMARK 465 SER B 5 REMARK 465 THR B 6 REMARK 465 VAL B 7 REMARK 465 VAL B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 PHE B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 TRP B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 GLY B 23 REMARK 465 ILE B 24 REMARK 465 GLN B 25 REMARK 465 ARG B 26 REMARK 465 VAL B 27 REMARK 465 PRO B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 TYR B 31 REMARK 465 PRO B 32 REMARK 465 ASN B 33 REMARK 465 SER B 34 REMARK 465 PRO B 35 REMARK 465 ILE B 36 REMARK 465 LEU B 37 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LEU C 3 REMARK 465 LYS C 4 REMARK 465 SER C 5 REMARK 465 THR C 6 REMARK 465 VAL C 7 REMARK 465 VAL C 8 REMARK 465 GLY C 9 REMARK 465 LEU C 10 REMARK 465 GLY C 11 REMARK 465 LEU C 12 REMARK 465 LEU C 13 REMARK 465 PHE C 14 REMARK 465 ALA C 15 REMARK 465 ALA C 16 REMARK 465 SER C 17 REMARK 465 SER C 18 REMARK 465 SER C 19 REMARK 465 TRP C 20 REMARK 465 ALA C 21 REMARK 465 ALA C 22 REMARK 465 GLY C 23 REMARK 465 ILE C 24 REMARK 465 GLN C 25 REMARK 465 ARG C 26 REMARK 465 VAL C 27 REMARK 465 PRO C 28 REMARK 465 SER C 29 REMARK 465 SER C 30 REMARK 465 TYR C 31 REMARK 465 PRO C 32 REMARK 465 ASN C 33 REMARK 465 SER C 34 REMARK 465 PRO C 35 REMARK 465 ILE C 36 REMARK 465 LEU C 37 REMARK 465 GLN C 38 REMARK 465 ARG C 165 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 LEU D 3 REMARK 465 LYS D 4 REMARK 465 SER D 5 REMARK 465 THR D 6 REMARK 465 VAL D 7 REMARK 465 VAL D 8 REMARK 465 GLY D 9 REMARK 465 LEU D 10 REMARK 465 GLY D 11 REMARK 465 LEU D 12 REMARK 465 LEU D 13 REMARK 465 PHE D 14 REMARK 465 ALA D 15 REMARK 465 ALA D 16 REMARK 465 SER D 17 REMARK 465 SER D 18 REMARK 465 SER D 19 REMARK 465 TRP D 20 REMARK 465 ALA D 21 REMARK 465 ALA D 22 REMARK 465 GLY D 23 REMARK 465 ILE D 24 REMARK 465 GLN D 25 REMARK 465 ARG D 26 REMARK 465 VAL D 27 REMARK 465 PRO D 28 REMARK 465 SER D 29 REMARK 465 SER D 30 REMARK 465 TYR D 31 REMARK 465 PRO D 32 REMARK 465 ASN D 33 REMARK 465 SER D 34 REMARK 465 PRO D 35 REMARK 465 ILE D 36 REMARK 465 LEU D 37 REMARK 465 GLN D 38 REMARK 465 ARG D 165 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 LEU E 3 REMARK 465 LYS E 4 REMARK 465 SER E 5 REMARK 465 THR E 6 REMARK 465 VAL E 7 REMARK 465 VAL E 8 REMARK 465 GLY E 9 REMARK 465 LEU E 10 REMARK 465 GLY E 11 REMARK 465 LEU E 12 REMARK 465 LEU E 13 REMARK 465 PHE E 14 REMARK 465 ALA E 15 REMARK 465 ALA E 16 REMARK 465 SER E 17 REMARK 465 SER E 18 REMARK 465 SER E 19 REMARK 465 TRP E 20 REMARK 465 ALA E 21 REMARK 465 ALA E 22 REMARK 465 GLY E 23 REMARK 465 ILE E 24 REMARK 465 GLN E 25 REMARK 465 ARG E 26 REMARK 465 VAL E 27 REMARK 465 PRO E 28 REMARK 465 SER E 29 REMARK 465 SER E 30 REMARK 465 TYR E 31 REMARK 465 PRO E 32 REMARK 465 ASN E 33 REMARK 465 SER E 34 REMARK 465 PRO E 35 REMARK 465 ILE E 36 REMARK 465 LEU E 37 REMARK 465 GLN E 38 REMARK 465 ARG E 165 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 LEU F 3 REMARK 465 LYS F 4 REMARK 465 SER F 5 REMARK 465 THR F 6 REMARK 465 VAL F 7 REMARK 465 VAL F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LEU F 12 REMARK 465 LEU F 13 REMARK 465 PHE F 14 REMARK 465 ALA F 15 REMARK 465 ALA F 16 REMARK 465 SER F 17 REMARK 465 SER F 18 REMARK 465 SER F 19 REMARK 465 TRP F 20 REMARK 465 ALA F 21 REMARK 465 ALA F 22 REMARK 465 GLY F 23 REMARK 465 ILE F 24 REMARK 465 GLN F 25 REMARK 465 ARG F 26 REMARK 465 VAL F 27 REMARK 465 PRO F 28 REMARK 465 SER F 29 REMARK 465 SER F 30 REMARK 465 TYR F 31 REMARK 465 PRO F 32 REMARK 465 ASN F 33 REMARK 465 SER F 34 REMARK 465 PRO F 35 REMARK 465 ILE F 36 REMARK 465 LEU F 37 REMARK 465 ARG F 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 209 O HOH F 212 1.66 REMARK 500 O LEU D 42 O HOH D 201 1.89 REMARK 500 O HOH E 209 O HOH E 218 1.97 REMARK 500 O GLU F 47 O HOH F 201 2.00 REMARK 500 O ALA C 153 O HOH C 201 2.06 REMARK 500 O HOH C 213 O HOH C 214 2.09 REMARK 500 N SER E 39 O HOH E 201 2.13 REMARK 500 OG1 THR B 74 O HOH B 201 2.14 REMARK 500 O HOH D 214 O HOH D 215 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 44 6.45 -69.97 REMARK 500 THR A 131 -163.93 -79.02 REMARK 500 ALA B 164 -179.38 -67.73 REMARK 500 ASP C 117 70.25 -105.63 REMARK 500 THR C 131 -162.53 -76.27 REMARK 500 ASP D 117 73.30 -107.62 REMARK 500 THR D 131 -165.33 -79.70 REMARK 500 THR E 131 -161.92 -74.28 REMARK 500 ASN F 45 13.54 -68.95 REMARK 500 THR F 131 -157.93 -80.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 9BKC A 1 165 UNP Q4KGW9 Q4KGW9_PSEF5 1 165 DBREF 9BKC B 1 165 UNP Q4KGW9 Q4KGW9_PSEF5 1 165 DBREF 9BKC C 1 165 UNP Q4KGW9 Q4KGW9_PSEF5 1 165 DBREF 9BKC D 1 165 UNP Q4KGW9 Q4KGW9_PSEF5 1 165 DBREF 9BKC E 1 165 UNP Q4KGW9 Q4KGW9_PSEF5 1 165 DBREF 9BKC F 1 165 UNP Q4KGW9 Q4KGW9_PSEF5 1 165 SEQRES 1 A 165 MET SER LEU LYS SER THR VAL VAL GLY LEU GLY LEU LEU SEQRES 2 A 165 PHE ALA ALA SER SER SER TRP ALA ALA GLY ILE GLN ARG SEQRES 3 A 165 VAL PRO SER SER TYR PRO ASN SER PRO ILE LEU GLN SER SEQRES 4 A 165 VAL THR LEU PRO ALA ASN SER GLU VAL THR TYR LEU SER SEQRES 5 A 165 GLY LEU LEU PRO ASP PRO VAL ASP PRO LYS ALA SER LYS SEQRES 6 A 165 GLU GLN ILE HIS ALA GLU GLY ASN THR GLU ALA GLN ALA SEQRES 7 A 165 ARG VAL VAL LEU ARG LYS VAL GLU THR ILE LEU ALA SER SEQRES 8 A 165 GLN GLY LEU THR LEU GLY ASP VAL VAL GLN LEU ARG ILE SEQRES 9 A 165 TYR LEU VAL GLY ASP PRO ALA LEU GLY GLY LYS LEU ASP SEQRES 10 A 165 PHE ASP GLY LEU GLN VAL ALA PHE ARG GLU PHE PHE GLY SEQRES 11 A 165 THR GLN LYS GLN PRO LEU LYS PRO ALA ARG THR THR VAL SEQRES 12 A 165 GLN VAL ALA GLY LEU VAL LEU PRO GLY ALA LEU ILE GLU SEQRES 13 A 165 VAL GLU THR VAL ALA ALA ARG ALA ARG SEQRES 1 B 165 MET SER LEU LYS SER THR VAL VAL GLY LEU GLY LEU LEU SEQRES 2 B 165 PHE ALA ALA SER SER SER TRP ALA ALA GLY ILE GLN ARG SEQRES 3 B 165 VAL PRO SER SER TYR PRO ASN SER PRO ILE LEU GLN SER SEQRES 4 B 165 VAL THR LEU PRO ALA ASN SER GLU VAL THR TYR LEU SER SEQRES 5 B 165 GLY LEU LEU PRO ASP PRO VAL ASP PRO LYS ALA SER LYS SEQRES 6 B 165 GLU GLN ILE HIS ALA GLU GLY ASN THR GLU ALA GLN ALA SEQRES 7 B 165 ARG VAL VAL LEU ARG LYS VAL GLU THR ILE LEU ALA SER SEQRES 8 B 165 GLN GLY LEU THR LEU GLY ASP VAL VAL GLN LEU ARG ILE SEQRES 9 B 165 TYR LEU VAL GLY ASP PRO ALA LEU GLY GLY LYS LEU ASP SEQRES 10 B 165 PHE ASP GLY LEU GLN VAL ALA PHE ARG GLU PHE PHE GLY SEQRES 11 B 165 THR GLN LYS GLN PRO LEU LYS PRO ALA ARG THR THR VAL SEQRES 12 B 165 GLN VAL ALA GLY LEU VAL LEU PRO GLY ALA LEU ILE GLU SEQRES 13 B 165 VAL GLU THR VAL ALA ALA ARG ALA ARG SEQRES 1 C 165 MET SER LEU LYS SER THR VAL VAL GLY LEU GLY LEU LEU SEQRES 2 C 165 PHE ALA ALA SER SER SER TRP ALA ALA GLY ILE GLN ARG SEQRES 3 C 165 VAL PRO SER SER TYR PRO ASN SER PRO ILE LEU GLN SER SEQRES 4 C 165 VAL THR LEU PRO ALA ASN SER GLU VAL THR TYR LEU SER SEQRES 5 C 165 GLY LEU LEU PRO ASP PRO VAL ASP PRO LYS ALA SER LYS SEQRES 6 C 165 GLU GLN ILE HIS ALA GLU GLY ASN THR GLU ALA GLN ALA SEQRES 7 C 165 ARG VAL VAL LEU ARG LYS VAL GLU THR ILE LEU ALA SER SEQRES 8 C 165 GLN GLY LEU THR LEU GLY ASP VAL VAL GLN LEU ARG ILE SEQRES 9 C 165 TYR LEU VAL GLY ASP PRO ALA LEU GLY GLY LYS LEU ASP SEQRES 10 C 165 PHE ASP GLY LEU GLN VAL ALA PHE ARG GLU PHE PHE GLY SEQRES 11 C 165 THR GLN LYS GLN PRO LEU LYS PRO ALA ARG THR THR VAL SEQRES 12 C 165 GLN VAL ALA GLY LEU VAL LEU PRO GLY ALA LEU ILE GLU SEQRES 13 C 165 VAL GLU THR VAL ALA ALA ARG ALA ARG SEQRES 1 D 165 MET SER LEU LYS SER THR VAL VAL GLY LEU GLY LEU LEU SEQRES 2 D 165 PHE ALA ALA SER SER SER TRP ALA ALA GLY ILE GLN ARG SEQRES 3 D 165 VAL PRO SER SER TYR PRO ASN SER PRO ILE LEU GLN SER SEQRES 4 D 165 VAL THR LEU PRO ALA ASN SER GLU VAL THR TYR LEU SER SEQRES 5 D 165 GLY LEU LEU PRO ASP PRO VAL ASP PRO LYS ALA SER LYS SEQRES 6 D 165 GLU GLN ILE HIS ALA GLU GLY ASN THR GLU ALA GLN ALA SEQRES 7 D 165 ARG VAL VAL LEU ARG LYS VAL GLU THR ILE LEU ALA SER SEQRES 8 D 165 GLN GLY LEU THR LEU GLY ASP VAL VAL GLN LEU ARG ILE SEQRES 9 D 165 TYR LEU VAL GLY ASP PRO ALA LEU GLY GLY LYS LEU ASP SEQRES 10 D 165 PHE ASP GLY LEU GLN VAL ALA PHE ARG GLU PHE PHE GLY SEQRES 11 D 165 THR GLN LYS GLN PRO LEU LYS PRO ALA ARG THR THR VAL SEQRES 12 D 165 GLN VAL ALA GLY LEU VAL LEU PRO GLY ALA LEU ILE GLU SEQRES 13 D 165 VAL GLU THR VAL ALA ALA ARG ALA ARG SEQRES 1 E 165 MET SER LEU LYS SER THR VAL VAL GLY LEU GLY LEU LEU SEQRES 2 E 165 PHE ALA ALA SER SER SER TRP ALA ALA GLY ILE GLN ARG SEQRES 3 E 165 VAL PRO SER SER TYR PRO ASN SER PRO ILE LEU GLN SER SEQRES 4 E 165 VAL THR LEU PRO ALA ASN SER GLU VAL THR TYR LEU SER SEQRES 5 E 165 GLY LEU LEU PRO ASP PRO VAL ASP PRO LYS ALA SER LYS SEQRES 6 E 165 GLU GLN ILE HIS ALA GLU GLY ASN THR GLU ALA GLN ALA SEQRES 7 E 165 ARG VAL VAL LEU ARG LYS VAL GLU THR ILE LEU ALA SER SEQRES 8 E 165 GLN GLY LEU THR LEU GLY ASP VAL VAL GLN LEU ARG ILE SEQRES 9 E 165 TYR LEU VAL GLY ASP PRO ALA LEU GLY GLY LYS LEU ASP SEQRES 10 E 165 PHE ASP GLY LEU GLN VAL ALA PHE ARG GLU PHE PHE GLY SEQRES 11 E 165 THR GLN LYS GLN PRO LEU LYS PRO ALA ARG THR THR VAL SEQRES 12 E 165 GLN VAL ALA GLY LEU VAL LEU PRO GLY ALA LEU ILE GLU SEQRES 13 E 165 VAL GLU THR VAL ALA ALA ARG ALA ARG SEQRES 1 F 165 MET SER LEU LYS SER THR VAL VAL GLY LEU GLY LEU LEU SEQRES 2 F 165 PHE ALA ALA SER SER SER TRP ALA ALA GLY ILE GLN ARG SEQRES 3 F 165 VAL PRO SER SER TYR PRO ASN SER PRO ILE LEU GLN SER SEQRES 4 F 165 VAL THR LEU PRO ALA ASN SER GLU VAL THR TYR LEU SER SEQRES 5 F 165 GLY LEU LEU PRO ASP PRO VAL ASP PRO LYS ALA SER LYS SEQRES 6 F 165 GLU GLN ILE HIS ALA GLU GLY ASN THR GLU ALA GLN ALA SEQRES 7 F 165 ARG VAL VAL LEU ARG LYS VAL GLU THR ILE LEU ALA SER SEQRES 8 F 165 GLN GLY LEU THR LEU GLY ASP VAL VAL GLN LEU ARG ILE SEQRES 9 F 165 TYR LEU VAL GLY ASP PRO ALA LEU GLY GLY LYS LEU ASP SEQRES 10 F 165 PHE ASP GLY LEU GLN VAL ALA PHE ARG GLU PHE PHE GLY SEQRES 11 F 165 THR GLN LYS GLN PRO LEU LYS PRO ALA ARG THR THR VAL SEQRES 12 F 165 GLN VAL ALA GLY LEU VAL LEU PRO GLY ALA LEU ILE GLU SEQRES 13 F 165 VAL GLU THR VAL ALA ALA ARG ALA ARG FORMUL 7 HOH *102(H2 O) HELIX 1 AA1 ASN A 73 GLN A 92 1 20 HELIX 2 AA2 THR A 95 GLY A 97 5 3 HELIX 3 AA3 ASP A 109 GLY A 113 5 5 HELIX 4 AA4 ASP A 117 PHE A 129 1 13 HELIX 5 AA5 ASN B 73 SER B 91 1 19 HELIX 6 AA6 THR B 95 GLY B 97 5 3 HELIX 7 AA7 ASP B 109 GLY B 113 5 5 HELIX 8 AA8 ASP B 117 PHE B 129 1 13 HELIX 9 AA9 ASN C 73 SER C 91 1 19 HELIX 10 AB1 THR C 95 GLY C 97 5 3 HELIX 11 AB2 ASP C 109 GLY C 113 5 5 HELIX 12 AB3 ASP C 117 PHE C 129 1 13 HELIX 13 AB4 ASN D 73 GLN D 92 1 20 HELIX 14 AB5 THR D 95 GLY D 97 5 3 HELIX 15 AB6 ASP D 109 GLY D 113 5 5 HELIX 16 AB7 ASP D 117 PHE D 129 1 13 HELIX 17 AB8 ASN E 73 SER E 91 1 19 HELIX 18 AB9 THR E 95 GLY E 97 5 3 HELIX 19 AC1 ASP E 109 GLY E 113 5 5 HELIX 20 AC2 ASP E 117 PHE E 129 1 13 HELIX 21 AC3 ASN F 73 SER F 91 1 19 HELIX 22 AC4 THR F 95 GLY F 97 5 3 HELIX 23 AC5 ASP F 109 GLY F 113 5 5 HELIX 24 AC6 ASP F 117 PHE F 129 1 13 SHEET 1 AA1 6 SER A 39 LEU A 42 0 SHEET 2 AA1 6 GLU B 47 LEU B 51 -1 O TYR B 50 N VAL A 40 SHEET 3 AA1 6 ILE B 155 ARG B 163 -1 O ALA B 161 N THR B 49 SHEET 4 AA1 6 VAL B 99 VAL B 107 -1 N TYR B 105 O GLU B 156 SHEET 5 AA1 6 ALA B 139 VAL B 145 1 O THR B 141 N ILE B 104 SHEET 6 AA1 6 GLY C 147 LEU C 148 -1 O GLY C 147 N GLN B 144 SHEET 1 AA2 5 ALA A 139 GLN A 144 0 SHEET 2 AA2 5 VAL A 99 LEU A 106 1 N ILE A 104 O THR A 141 SHEET 3 AA2 5 ILE A 155 ARG A 163 -1 O GLU A 156 N TYR A 105 SHEET 4 AA2 5 GLU A 47 TYR A 50 -1 N THR A 49 O ALA A 161 SHEET 5 AA2 5 VAL C 40 LEU C 42 -1 O LEU C 42 N VAL A 48 SHEET 1 AA3 5 SER B 39 LEU B 42 0 SHEET 2 AA3 5 GLU C 47 LEU C 51 -1 O VAL C 48 N LEU B 42 SHEET 3 AA3 5 ILE C 155 ARG C 163 -1 O ALA C 161 N THR C 49 SHEET 4 AA3 5 VAL C 99 LEU C 106 -1 N ARG C 103 O GLU C 158 SHEET 5 AA3 5 ALA C 139 GLN C 144 1 O THR C 141 N ILE C 104 SHEET 1 AA4 4 VAL D 48 TYR D 50 0 SHEET 2 AA4 4 ILE D 155 ALA D 162 -1 O ALA D 161 N THR D 49 SHEET 3 AA4 4 VAL D 99 LEU D 106 -1 N ARG D 103 O GLU D 158 SHEET 4 AA4 4 ALA D 139 GLN D 144 1 O THR D 141 N ILE D 104 SHEET 1 AA5 5 ALA E 139 VAL E 145 0 SHEET 2 AA5 5 VAL E 99 VAL E 107 1 N ILE E 104 O THR E 141 SHEET 3 AA5 5 ILE E 155 ARG E 163 -1 O GLU E 158 N ARG E 103 SHEET 4 AA5 5 GLU E 47 LEU E 51 -1 N THR E 49 O ALA E 161 SHEET 5 AA5 5 SER F 39 LEU F 42 -1 O LEU F 42 N VAL E 48 SHEET 1 AA6 5 GLY E 147 LEU E 148 0 SHEET 2 AA6 5 ALA F 139 VAL F 145 -1 O GLN F 144 N GLY E 147 SHEET 3 AA6 5 VAL F 99 VAL F 107 1 N ILE F 104 O THR F 141 SHEET 4 AA6 5 ILE F 155 ARG F 163 -1 O GLU F 158 N ARG F 103 SHEET 5 AA6 5 GLU F 47 TYR F 50 -1 N THR F 49 O ALA F 161 CRYST1 84.010 84.010 123.780 90.00 90.00 90.00 P 43 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008079 0.00000 MTRIX1 1 -0.185234 0.081127 -0.979340 39.78750 1 MTRIX2 1 -0.976316 0.098171 0.192795 26.58205 1 MTRIX3 1 0.111783 0.991857 0.061021 2.91515 1 MTRIX1 2 -0.180164 -0.975803 0.123897 32.32393 1 MTRIX2 2 0.060406 0.114745 0.991557 -8.54269 1 MTRIX3 2 -0.981780 0.186127 0.038272 33.88692 1 MTRIX1 3 0.936051 -0.351388 0.018273 41.87307 1 MTRIX2 3 -0.351048 -0.936156 -0.019432 42.12588 1 MTRIX3 3 0.023935 0.011774 -0.999644 31.66839 1 MTRIX1 4 0.013034 0.236269 -0.971600 37.88492 1 MTRIX2 4 0.172049 0.956661 0.234944 9.20238 1 MTRIX3 4 0.985002 -0.170225 -0.028181 28.66133 1 MTRIX1 5 0.967379 -0.178746 0.179518 3.47270 1 MTRIX2 5 -0.187873 -0.030823 0.981710 14.45438 1 MTRIX3 5 -0.169944 -0.983412 -0.063399 61.64526 1