data_9BLM # _entry.id 9BLM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9BLM pdb_00009blm 10.2210/pdb9blm/pdb WWPDB D_1000283173 ? ? BMRB 31171 ? 10.13018/BMR31171 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9BLM _pdbx_database_status.recvd_initial_deposition_date 2024-04-30 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Structure of West Nile Virus 3'- stem-loop_68NTS ; _pdbx_database_related.db_id 31171 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email varani@uw.edu _pdbx_contact_author.name_first Gabriele _pdbx_contact_author.name_last Varani _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6642-7144 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhu, Y.' 1 0000-0002-4980-9535 'Chaubey, B.' 2 0000-0002-6655-0641 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 436 _citation.language ? _citation.page_first 168767 _citation.page_last 168767 _citation.title ;Structure of Essential RNA Regulatory Elements in the West Nile Virus 3'-Terminal Stem Loop. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2024.168767 _citation.pdbx_database_id_PubMed 39214284 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhu, Y.' 1 ? primary 'Chaubey, B.' 2 ? primary 'Olsen, G.L.' 3 ? primary 'Varani, G.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (68-MER)' _entity.formula_weight 21948.059 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGCCUGGGAUAGACUAGGAGAUCUUCUGCUCUGCACAACCUUCGGGUGGUGCGAGA(AP7)CACAGGAUACU' _entity_poly.pdbx_seq_one_letter_code_can GGCCUGGGAUAGACUAGGAGAUCUUCUGCUCUGCACAACCUUCGGGUGGUGCGAGAACACAGGAUACU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 C n 1 5 U n 1 6 G n 1 7 G n 1 8 G n 1 9 A n 1 10 U n 1 11 A n 1 12 G n 1 13 A n 1 14 C n 1 15 U n 1 16 A n 1 17 G n 1 18 G n 1 19 A n 1 20 G n 1 21 A n 1 22 U n 1 23 C n 1 24 U n 1 25 U n 1 26 C n 1 27 U n 1 28 G n 1 29 C n 1 30 U n 1 31 C n 1 32 U n 1 33 G n 1 34 C n 1 35 A n 1 36 C n 1 37 A n 1 38 A n 1 39 C n 1 40 C n 1 41 U n 1 42 U n 1 43 C n 1 44 G n 1 45 G n 1 46 G n 1 47 U n 1 48 G n 1 49 G n 1 50 U n 1 51 G n 1 52 C n 1 53 G n 1 54 A n 1 55 G n 1 56 A n 1 57 AP7 n 1 58 C n 1 59 A n 1 60 C n 1 61 A n 1 62 G n 1 63 G n 1 64 A n 1 65 U n 1 66 A n 1 67 C n 1 68 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 68 _pdbx_entity_src_syn.organism_scientific 'West Nile virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11082 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AP7 'RNA linking' n ;N1-PROTONATED ADENOSINE-5'-MONOPHOSPHATE ; ? 'C10 H15 N5 O7 P 1' 348.229 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 U 10 10 10 U U A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 A 19 19 19 A A A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 U 22 22 22 U U A . n A 1 23 C 23 23 23 C C A . n A 1 24 U 24 24 24 U U A . n A 1 25 U 25 25 25 U U A . n A 1 26 C 26 26 26 C C A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 U 30 30 30 U U A . n A 1 31 C 31 31 31 C C A . n A 1 32 U 32 32 32 U U A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n A 1 37 A 37 37 37 A A A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 C 40 40 40 C C A . n A 1 41 U 41 41 41 U U A . n A 1 42 U 42 42 42 U U A . n A 1 43 C 43 43 43 C C A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 G 46 46 46 G G A . n A 1 47 U 47 47 47 U U A . n A 1 48 G 48 48 48 G G A . n A 1 49 G 49 49 49 G G A . n A 1 50 U 50 50 50 U U A . n A 1 51 G 51 51 51 G G A . n A 1 52 C 52 52 52 C C A . n A 1 53 G 53 53 53 G G A . n A 1 54 A 54 54 54 A A A . n A 1 55 G 55 55 55 G G A . n A 1 56 A 56 56 56 A A A . n A 1 57 AP7 57 57 57 AP7 AP7 A . n A 1 58 C 58 58 58 C C A . n A 1 59 A 59 59 59 A A A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 G 62 62 62 G G A . n A 1 63 G 63 63 63 G G A . n A 1 64 A 64 64 64 A A A . n A 1 65 U 65 65 65 U U A . n A 1 66 A 66 66 66 A A A . n A 1 67 C 67 67 67 C C A . n A 1 68 U 68 68 68 U U A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AP7 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AP7 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9BLM _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 9BLM _struct.title ;Structure of West Nile Virus 3'- stem-loop_68NTS ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9BLM _struct_keywords.text ;3'-stemloop RNA, CA+ mismatch, Flavivirus, UUCG tetraloop, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, RNA ; _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9BLM _struct_ref.pdbx_db_accession 9BLM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9BLM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 68 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9BLM _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 68 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 68 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 500 ? 1 MORE 5 ? 1 'SSA (A^2)' 12350 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 56 "O3'" ? ? ? 1_555 A AP7 57 P ? ? A A 56 A AP7 57 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A AP7 57 "O3'" ? ? ? 1_555 A C 58 P ? ? A AP7 57 A C 58 1_555 ? ? ? ? ? ? ? 1.609 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A A 19 N1 ? ? A G 2 A A 19 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog2 hydrog ? ? A G 2 O6 ? ? ? 1_555 A A 19 N6 ? ? A G 2 A A 19 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog3 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 3 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 3 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 3 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 4 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 4 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 4 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 16 N1 ? ? A U 5 A A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 16 N6 ? ? A U 5 A A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 N1 ? ? ? 1_555 A U 15 O2 ? ? A G 6 A U 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A G 6 O6 ? ? ? 1_555 A U 15 N3 ? ? A G 6 A U 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 7 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 7 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 7 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 N1 ? ? ? 1_555 A A 13 N1 ? ? A G 8 A A 13 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog17 hydrog ? ? A G 8 O6 ? ? ? 1_555 A A 13 N6 ? ? A G 8 A A 13 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog18 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 68 N3 ? ? A A 19 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 68 O4 ? ? A A 19 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 20 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 20 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 20 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 21 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 21 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 21 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 21 N3 ? ? ? 1_555 A A 66 N6 ? ? A A 21 A A 66 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog26 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 22 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 22 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 23 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 23 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 23 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 24 N3 ? ? ? 1_555 A G 62 O6 ? ? A U 24 A G 62 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog32 hydrog ? ? A U 24 O2 ? ? ? 1_555 A G 62 N1 ? ? A U 24 A G 62 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 61 N1 ? ? A U 25 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 25 O4 ? ? ? 1_555 A A 61 N6 ? ? A U 25 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 59 N1 ? ? A U 27 A A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 59 N6 ? ? A U 27 A A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 58 N3 ? ? A G 28 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 58 O2 ? ? A G 28 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 58 N4 ? ? A G 28 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 29 N3 ? ? ? 1_555 A AP7 57 N6 ? ? A C 29 A AP7 57 1_555 ? ? ? ? ? ? 'C-AP7 MISPAIR' ? ? ? hydrog41 hydrog ? ? A U 30 N3 ? ? ? 1_555 A A 56 N1 ? ? A U 30 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 30 O4 ? ? ? 1_555 A A 56 N6 ? ? A U 30 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 31 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 31 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 31 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 54 N1 ? ? A U 32 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 32 O4 ? ? ? 1_555 A A 54 N6 ? ? A U 32 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 33 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 33 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 33 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 34 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 34 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 34 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 35 N1 ? ? ? 1_555 A U 50 N3 ? ? A A 35 A U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 35 N6 ? ? ? 1_555 A U 50 O4 ? ? A A 35 A U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 36 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 36 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 36 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 36 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 36 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 36 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 37 N1 ? ? ? 1_555 A G 48 N1 ? ? A A 37 A G 48 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog60 hydrog ? ? A A 37 N6 ? ? ? 1_555 A G 48 O6 ? ? A A 37 A G 48 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog61 hydrog ? ? A A 38 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 38 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 38 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 39 N3 ? ? ? 1_555 A G 46 N1 ? ? A C 39 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 39 N4 ? ? ? 1_555 A G 46 O6 ? ? A C 39 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 39 O2 ? ? ? 1_555 A G 46 N2 ? ? A C 39 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 40 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 40 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 40 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 41 O2 ? ? ? 1_555 A G 44 N1 ? ? A U 41 A G 44 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 9BLM _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A A 66 ? ? "O4'" A A 66 ? ? "C4'" A A 66 ? ? 105.07 109.70 -4.63 0.70 N 2 4 "C1'" A A 66 ? ? "O4'" A A 66 ? ? "C4'" A A 66 ? ? 104.78 109.70 -4.92 0.70 N # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # _pdbx_nmr_ensemble.entry_id 9BLM _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9BLM _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM RNA (68-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' WNV_68NT solution ? 2 '1 mM RNA (68-MER), 100% D2O' '100% D2O' WNV_68NT_D2O solution ? 3 '0.8 mM [U-99% 13C; U-99% 15N] RNA (68-MER), 95% H2O/5% D2O' '95% H2O/5% D2O' 13C15N_68NT solution ? 4 '0.8 mM [U-99% 13C; U-99% 15N] RNA (68-MER), 100% D2O' '100% D2O' 13C15N_68NT_D2O solution ? 5 '0.8 mM [U-2H] RNA (68-MER), 100% D2O' '100% D2O' 'WNV_68NT(D)' solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'RNA (68-MER)' 1 ? mM 'natural abundance' 2 'RNA (68-MER)' 1 ? mM 'natural abundance' 3 'RNA (68-MER)' 0.8 ? mM '[U-99% 13C; U-99% 15N]' 4 'RNA (68-MER)' 0.8 ? mM '[U-99% 13C; U-99% 15N]' 5 'RNA (68-MER)' 0.8 ? mM '[U-2H]' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 310 atm 1 6.4 20 ? ? mM 'High T' ? pH ? ? K 2 288 atm 1 6.4 20 ? ? mM 'Low T' ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 2 1 '2D 1H-1H NOESY' 2 isotropic 2 1 2 '2D 1H-1H NOESY' 1 isotropic 3 1 2 '2D 1H-1H TOCSY' 1 isotropic 4 2 3 '2D 1H-15N HSQC' 2 isotropic 5 1 4 '2D 1H-13C HSQC' 2 isotropic 6 1 5 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_refine.entry_id 9BLM _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing TopSpin ? 'Bruker Biospin' 2 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'Woonghee Lee, John L. Markley' 4 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AP7 "C1'" C N R 38 AP7 N1 N Y N 39 AP7 C2 C Y N 40 AP7 N3 N Y N 41 AP7 C4 C Y N 42 AP7 C5 C Y N 43 AP7 C6 C Y N 44 AP7 N6 N N N 45 AP7 N7 N Y N 46 AP7 C8 C Y N 47 AP7 N9 N Y N 48 AP7 "C2'" C N R 49 AP7 "O2'" O N N 50 AP7 "C3'" C N S 51 AP7 "O3'" O N N 52 AP7 "C4'" C N R 53 AP7 "O4'" O N N 54 AP7 "C5'" C N N 55 AP7 "O5'" O N N 56 AP7 OP1 O N N 57 AP7 OP2 O N N 58 AP7 P P N N 59 AP7 OP3 O N N 60 AP7 "H1'" H N N 61 AP7 H1 H N N 62 AP7 H2 H N N 63 AP7 H61 H N N 64 AP7 H62 H N N 65 AP7 H8 H N N 66 AP7 "H2'" H N N 67 AP7 "HO2'" H N N 68 AP7 "H3'" H N N 69 AP7 "HO3'" H N N 70 AP7 "H4'" H N N 71 AP7 "H5''" H N N 72 AP7 "H5'" H N N 73 AP7 HOP2 H N N 74 AP7 HOP3 H N N 75 C OP3 O N N 76 C P P N N 77 C OP1 O N N 78 C OP2 O N N 79 C "O5'" O N N 80 C "C5'" C N N 81 C "C4'" C N R 82 C "O4'" O N N 83 C "C3'" C N S 84 C "O3'" O N N 85 C "C2'" C N R 86 C "O2'" O N N 87 C "C1'" C N R 88 C N1 N N N 89 C C2 C N N 90 C O2 O N N 91 C N3 N N N 92 C C4 C N N 93 C N4 N N N 94 C C5 C N N 95 C C6 C N N 96 C HOP3 H N N 97 C HOP2 H N N 98 C "H5'" H N N 99 C "H5''" H N N 100 C "H4'" H N N 101 C "H3'" H N N 102 C "HO3'" H N N 103 C "H2'" H N N 104 C "HO2'" H N N 105 C "H1'" H N N 106 C H41 H N N 107 C H42 H N N 108 C H5 H N N 109 C H6 H N N 110 G OP3 O N N 111 G P P N N 112 G OP1 O N N 113 G OP2 O N N 114 G "O5'" O N N 115 G "C5'" C N N 116 G "C4'" C N R 117 G "O4'" O N N 118 G "C3'" C N S 119 G "O3'" O N N 120 G "C2'" C N R 121 G "O2'" O N N 122 G "C1'" C N R 123 G N9 N Y N 124 G C8 C Y N 125 G N7 N Y N 126 G C5 C Y N 127 G C6 C N N 128 G O6 O N N 129 G N1 N N N 130 G C2 C N N 131 G N2 N N N 132 G N3 N N N 133 G C4 C Y N 134 G HOP3 H N N 135 G HOP2 H N N 136 G "H5'" H N N 137 G "H5''" H N N 138 G "H4'" H N N 139 G "H3'" H N N 140 G "HO3'" H N N 141 G "H2'" H N N 142 G "HO2'" H N N 143 G "H1'" H N N 144 G H8 H N N 145 G H1 H N N 146 G H21 H N N 147 G H22 H N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AP7 "C1'" N9 sing N N 40 AP7 "C1'" "C2'" sing N N 41 AP7 "C1'" "O4'" sing N N 42 AP7 "C1'" "H1'" sing N N 43 AP7 N1 C2 sing Y N 44 AP7 N1 C6 doub Y N 45 AP7 N1 H1 sing N N 46 AP7 C2 N3 doub Y N 47 AP7 C2 H2 sing N N 48 AP7 N3 C4 sing Y N 49 AP7 C4 C5 doub Y N 50 AP7 C4 N9 sing Y N 51 AP7 C5 C6 sing Y N 52 AP7 C5 N7 sing Y N 53 AP7 C6 N6 sing N N 54 AP7 N6 H61 sing N N 55 AP7 N6 H62 sing N N 56 AP7 N7 C8 doub Y N 57 AP7 C8 N9 sing Y N 58 AP7 C8 H8 sing N N 59 AP7 "C2'" "O2'" sing N N 60 AP7 "C2'" "C3'" sing N N 61 AP7 "C2'" "H2'" sing N N 62 AP7 "O2'" "HO2'" sing N N 63 AP7 "C3'" "O3'" sing N N 64 AP7 "C3'" "C4'" sing N N 65 AP7 "C3'" "H3'" sing N N 66 AP7 "O3'" "HO3'" sing N N 67 AP7 "C4'" "O4'" sing N N 68 AP7 "C4'" "C5'" sing N N 69 AP7 "C4'" "H4'" sing N N 70 AP7 "C5'" "O5'" sing N N 71 AP7 "C5'" "H5''" sing N N 72 AP7 "C5'" "H5'" sing N N 73 AP7 "O5'" P sing N N 74 AP7 OP1 P doub N N 75 AP7 OP2 P sing N N 76 AP7 OP2 HOP2 sing N N 77 AP7 P OP3 sing N N 78 AP7 OP3 HOP3 sing N N 79 C OP3 P sing N N 80 C OP3 HOP3 sing N N 81 C P OP1 doub N N 82 C P OP2 sing N N 83 C P "O5'" sing N N 84 C OP2 HOP2 sing N N 85 C "O5'" "C5'" sing N N 86 C "C5'" "C4'" sing N N 87 C "C5'" "H5'" sing N N 88 C "C5'" "H5''" sing N N 89 C "C4'" "O4'" sing N N 90 C "C4'" "C3'" sing N N 91 C "C4'" "H4'" sing N N 92 C "O4'" "C1'" sing N N 93 C "C3'" "O3'" sing N N 94 C "C3'" "C2'" sing N N 95 C "C3'" "H3'" sing N N 96 C "O3'" "HO3'" sing N N 97 C "C2'" "O2'" sing N N 98 C "C2'" "C1'" sing N N 99 C "C2'" "H2'" sing N N 100 C "O2'" "HO2'" sing N N 101 C "C1'" N1 sing N N 102 C "C1'" "H1'" sing N N 103 C N1 C2 sing N N 104 C N1 C6 sing N N 105 C C2 O2 doub N N 106 C C2 N3 sing N N 107 C N3 C4 doub N N 108 C C4 N4 sing N N 109 C C4 C5 sing N N 110 C N4 H41 sing N N 111 C N4 H42 sing N N 112 C C5 C6 doub N N 113 C C5 H5 sing N N 114 C C6 H6 sing N N 115 G OP3 P sing N N 116 G OP3 HOP3 sing N N 117 G P OP1 doub N N 118 G P OP2 sing N N 119 G P "O5'" sing N N 120 G OP2 HOP2 sing N N 121 G "O5'" "C5'" sing N N 122 G "C5'" "C4'" sing N N 123 G "C5'" "H5'" sing N N 124 G "C5'" "H5''" sing N N 125 G "C4'" "O4'" sing N N 126 G "C4'" "C3'" sing N N 127 G "C4'" "H4'" sing N N 128 G "O4'" "C1'" sing N N 129 G "C3'" "O3'" sing N N 130 G "C3'" "C2'" sing N N 131 G "C3'" "H3'" sing N N 132 G "O3'" "HO3'" sing N N 133 G "C2'" "O2'" sing N N 134 G "C2'" "C1'" sing N N 135 G "C2'" "H2'" sing N N 136 G "O2'" "HO2'" sing N N 137 G "C1'" N9 sing N N 138 G "C1'" "H1'" sing N N 139 G N9 C8 sing Y N 140 G N9 C4 sing Y N 141 G C8 N7 doub Y N 142 G C8 H8 sing N N 143 G N7 C5 sing Y N 144 G C5 C6 sing N N 145 G C5 C4 doub Y N 146 G C6 O6 doub N N 147 G C6 N1 sing N N 148 G N1 C2 sing N N 149 G N1 H1 sing N N 150 G C2 N2 sing N N 151 G C2 N3 doub N N 152 G N2 H21 sing N N 153 G N2 H22 sing N N 154 G N3 C4 sing N N 155 U OP3 P sing N N 156 U OP3 HOP3 sing N N 157 U P OP1 doub N N 158 U P OP2 sing N N 159 U P "O5'" sing N N 160 U OP2 HOP2 sing N N 161 U "O5'" "C5'" sing N N 162 U "C5'" "C4'" sing N N 163 U "C5'" "H5'" sing N N 164 U "C5'" "H5''" sing N N 165 U "C4'" "O4'" sing N N 166 U "C4'" "C3'" sing N N 167 U "C4'" "H4'" sing N N 168 U "O4'" "C1'" sing N N 169 U "C3'" "O3'" sing N N 170 U "C3'" "C2'" sing N N 171 U "C3'" "H3'" sing N N 172 U "O3'" "HO3'" sing N N 173 U "C2'" "O2'" sing N N 174 U "C2'" "C1'" sing N N 175 U "C2'" "H2'" sing N N 176 U "O2'" "HO2'" sing N N 177 U "C1'" N1 sing N N 178 U "C1'" "H1'" sing N N 179 U N1 C2 sing N N 180 U N1 C6 sing N N 181 U C2 O2 doub N N 182 U C2 N3 sing N N 183 U N3 C4 sing N N 184 U N3 H3 sing N N 185 U C4 O4 doub N N 186 U C4 C5 sing N N 187 U C5 C6 doub N N 188 U C5 H5 sing N N 189 U C6 H6 sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9BLM 'double helix' 9BLM 'a-form double helix' 9BLM 'hairpin loop' 9BLM tetraloop 9BLM 'bulge loop' 9BLM 'mismatched base pair' 9BLM 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 13 1_555 A G 8 1_555 2.279 1.528 -0.601 -42.081 32.303 -46.573 1 A_A13:G8_A A 13 ? A 8 ? 8 1 1 A C 14 1_555 A G 7 1_555 0.132 0.122 0.005 2.216 0.049 -4.065 2 A_C14:G7_A A 14 ? A 7 ? 19 1 1 A U 15 1_555 A G 6 1_555 1.336 -0.254 0.014 3.785 -9.903 -2.942 3 A_U15:G6_A A 15 ? A 6 ? 28 1 1 A A 16 1_555 A U 5 1_555 0.048 -0.133 0.150 0.604 -14.476 4.656 4 A_A16:U5_A A 16 ? A 5 ? 20 1 1 A G 17 1_555 A C 4 1_555 -0.316 -0.113 0.069 -7.213 -12.904 3.308 5 A_G17:C4_A A 17 ? A 4 ? 19 1 1 A G 18 1_555 A C 3 1_555 0.097 0.082 0.048 -11.423 -8.818 1.015 6 A_G18:C3_A A 18 ? A 3 ? 19 1 1 A A 19 1_555 A U 68 1_555 -0.419 -0.123 -0.249 -1.788 -18.418 12.550 7 A_A19:U68_A A 19 ? A 68 ? 20 1 1 A G 20 1_555 A C 67 1_555 0.154 0.225 0.000 -8.746 -6.255 9.993 8 A_G20:C67_A A 20 ? A 67 ? 19 1 1 A A 21 1_555 A U 65 1_555 0.276 0.139 -0.208 7.968 -21.121 -5.714 9 A_A21:U65_A A 21 ? A 65 ? 20 1 1 A U 22 1_555 A A 64 1_555 0.090 -0.234 0.005 2.786 -12.563 -4.817 10 A_U22:A64_A A 22 ? A 64 ? 20 1 1 A C 23 1_555 A G 63 1_555 0.406 -0.039 -0.067 2.652 -9.894 -0.504 11 A_C23:G63_A A 23 ? A 63 ? 19 1 1 A U 24 1_555 A G 62 1_555 1.271 -0.285 -0.050 0.443 -7.219 -4.674 12 A_U24:G62_A A 24 ? A 62 ? 28 1 1 A U 25 1_555 A A 61 1_555 0.248 -0.265 -0.042 -0.058 -8.153 -0.954 13 A_U25:A61_A A 25 ? A 61 ? 20 1 1 A U 27 1_555 A A 59 1_555 0.000 -0.189 -0.045 0.261 -7.800 -1.482 14 A_U27:A59_A A 27 ? A 59 ? 20 1 1 A G 28 1_555 A C 58 1_555 -0.298 -0.046 -0.212 -1.050 -6.131 0.189 15 A_G28:C58_A A 28 ? A 58 ? 19 1 1 A C 29 1_555 A AP7 57 1_555 1.627 -0.395 0.037 -2.794 -12.900 -8.986 16 A_C29:AP757_A A 29 ? A 57 ? ? ? 1 A U 30 1_555 A A 56 1_555 0.055 -0.202 -0.013 2.683 -6.720 -1.113 17 A_U30:A56_A A 30 ? A 56 ? 20 1 1 A C 31 1_555 A G 55 1_555 0.729 -0.279 0.244 3.058 -6.800 2.850 18 A_C31:G55_A A 31 ? A 55 ? 19 1 1 A U 32 1_555 A A 54 1_555 0.930 -0.386 0.468 4.615 -2.778 9.985 19 A_U32:A54_A A 32 ? A 54 ? 20 1 1 A G 33 1_555 A C 52 1_555 -0.058 0.093 0.061 -4.239 -6.814 -4.962 20 A_G33:C52_A A 33 ? A 52 ? 19 1 1 A C 34 1_555 A G 51 1_555 0.746 -0.210 0.040 0.983 -12.810 -4.720 21 A_C34:G51_A A 34 ? A 51 ? 19 1 1 A A 35 1_555 A U 50 1_555 -0.045 -0.193 -0.007 -2.586 -12.534 -7.582 22 A_A35:U50_A A 35 ? A 50 ? 20 1 1 A C 36 1_555 A G 49 1_555 0.415 0.146 0.013 -1.437 -7.719 -8.324 23 A_C36:G49_A A 36 ? A 49 ? 19 1 1 A A 37 1_555 A G 48 1_555 0.675 1.152 -0.706 -7.262 -6.997 -9.120 24 A_A37:G48_A A 37 ? A 48 ? 8 1 1 A A 38 1_555 A U 47 1_555 0.209 0.142 0.246 3.523 -8.137 -7.503 25 A_A38:U47_A A 38 ? A 47 ? 20 1 1 A C 39 1_555 A G 46 1_555 0.513 -0.105 -0.020 3.145 -10.914 1.497 26 A_C39:G46_A A 39 ? A 46 ? 19 1 1 A C 40 1_555 A G 45 1_555 0.711 -0.206 -0.135 2.968 -0.863 4.328 27 A_C40:G45_A A 40 ? A 45 ? 19 1 1 A U 41 1_555 A G 44 1_555 0.231 -4.821 0.266 -25.659 2.283 -128.332 28 A_U41:G44_A A 41 ? A 44 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 13 1_555 A G 8 1_555 A C 14 1_555 A G 7 1_555 2.632 -0.530 3.024 -12.958 19.885 16.152 -3.910 -7.170 0.170 47.115 30.701 28.644 1 AA_A13C14:G7G8_AA A 13 ? A 8 ? A 14 ? A 7 ? 1 A C 14 1_555 A G 7 1_555 A U 15 1_555 A G 6 1_555 -0.008 -1.643 3.289 1.067 10.747 33.098 -4.275 0.164 2.642 18.268 -1.814 34.769 2 AA_C14U15:G6G7_AA A 14 ? A 7 ? A 15 ? A 6 ? 1 A U 15 1_555 A G 6 1_555 A A 16 1_555 A U 5 1_555 0.251 -1.786 3.177 0.732 10.253 26.291 -5.755 -0.365 2.334 21.522 -1.537 28.196 3 AA_U15A16:U5G6_AA A 15 ? A 6 ? A 16 ? A 5 ? 1 A A 16 1_555 A U 5 1_555 A G 17 1_555 A C 4 1_555 -0.100 -1.640 3.372 -0.596 8.018 30.264 -4.508 0.077 2.855 15.026 1.116 31.290 4 AA_A16G17:C4U5_AA A 16 ? A 5 ? A 17 ? A 4 ? 1 A G 17 1_555 A C 4 1_555 A G 18 1_555 A C 3 1_555 0.043 -1.746 3.236 1.430 9.942 33.457 -4.293 0.127 2.625 16.805 -2.417 34.891 5 AA_G17G18:C3C4_AA A 17 ? A 4 ? A 18 ? A 3 ? 1 A G 18 1_555 A C 3 1_555 A A 19 1_555 A U 68 1_555 0.300 -1.205 4.465 -19.248 21.325 27.256 -4.939 -3.291 2.338 35.174 31.748 39.402 6 AA_G18A19:U68C3_AA A 18 ? A 3 ? A 19 ? A 68 ? 1 A A 19 1_555 A U 68 1_555 A G 20 1_555 A C 67 1_555 -0.466 -1.676 3.315 -2.707 4.761 31.747 -3.856 0.366 3.066 8.624 4.903 32.204 7 AA_A19G20:C67U68_AA A 19 ? A 68 ? A 20 ? A 67 ? 1 A G 20 1_555 A C 67 1_555 A A 21 1_555 A U 65 1_555 0.858 -1.702 3.670 -13.504 13.888 47.875 -2.938 -1.938 2.787 16.356 15.904 51.431 8 AA_G20A21:U65C67_AA A 20 ? A 67 ? A 21 ? A 65 ? 1 A A 21 1_555 A U 65 1_555 A U 22 1_555 A A 64 1_555 -0.062 -1.530 3.367 -2.660 5.254 34.064 -3.385 -0.304 3.100 8.885 4.499 34.555 9 AA_A21U22:A64U65_AA A 21 ? A 65 ? A 22 ? A 64 ? 1 A U 22 1_555 A A 64 1_555 A C 23 1_555 A G 63 1_555 0.088 -1.590 3.246 0.415 3.217 33.908 -3.211 -0.087 3.088 5.500 -0.709 34.058 10 AA_U22C23:G63A64_AA A 22 ? A 64 ? A 23 ? A 63 ? 1 A C 23 1_555 A G 63 1_555 A U 24 1_555 A G 62 1_555 -0.281 -1.579 3.338 0.711 6.490 34.932 -3.515 0.562 2.999 10.695 -1.172 35.518 11 AA_C23U24:G62G63_AA A 23 ? A 63 ? A 24 ? A 62 ? 1 A U 24 1_555 A G 62 1_555 A U 25 1_555 A A 61 1_555 0.096 -1.659 3.219 1.786 9.209 28.288 -4.977 0.153 2.564 18.220 -3.534 29.773 12 AA_U24U25:A61G62_AA A 24 ? A 62 ? A 25 ? A 61 ? 1 A U 25 1_555 A A 61 1_555 A U 27 1_555 A A 59 1_555 -0.004 -3.042 6.388 0.409 15.762 64.454 -3.967 0.035 5.595 14.551 -0.378 66.152 13 AA_U25U27:A59A61_AA A 25 ? A 61 ? A 27 ? A 59 ? 1 A U 27 1_555 A A 59 1_555 A G 28 1_555 A C 58 1_555 0.068 -1.640 3.241 0.284 7.801 30.751 -4.339 -0.075 2.753 14.420 -0.525 31.703 14 AA_U27G28:C58A59_AA A 27 ? A 59 ? A 28 ? A 58 ? 1 A G 28 1_555 A C 58 1_555 A C 29 1_555 A AP7 57 1_555 -0.536 -1.448 3.265 0.276 6.687 42.430 -2.618 0.759 3.010 9.171 -0.378 42.930 15 AA_G28C29:AP757C58_AA A 28 ? A 58 ? A 29 ? A 57 ? 1 A C 29 1_555 A AP7 57 1_555 A U 30 1_555 A A 56 1_555 0.190 -1.789 3.307 -2.939 7.356 25.103 -5.773 -1.152 2.645 16.412 6.556 26.304 16 AA_C29U30:A56AP757_AA A 29 ? A 57 ? A 30 ? A 56 ? 1 A U 30 1_555 A A 56 1_555 A C 31 1_555 A G 55 1_555 -0.064 -1.517 3.284 -1.258 8.167 34.524 -3.631 -0.070 2.862 13.523 2.083 35.470 17 AA_U30C31:G55A56_AA A 30 ? A 56 ? A 31 ? A 55 ? 1 A C 31 1_555 A G 55 1_555 A U 32 1_555 A A 54 1_555 0.208 -1.486 3.157 -0.118 8.355 30.919 -4.065 -0.396 2.673 15.323 0.216 32.001 18 AA_C31U32:A54G55_AA A 31 ? A 55 ? A 32 ? A 54 ? 1 A U 32 1_555 A A 54 1_555 A G 33 1_555 A C 52 1_555 0.640 -2.219 5.448 -16.448 8.940 44.189 -3.864 -2.860 4.453 11.301 20.793 47.807 19 AA_U32G33:C52A54_AA A 32 ? A 54 ? A 33 ? A 52 ? 1 A G 33 1_555 A C 52 1_555 A C 34 1_555 A G 51 1_555 -0.044 -1.536 3.098 0.550 -1.878 37.507 -2.152 0.137 3.168 -2.918 -0.855 37.556 20 AA_G33C34:G51C52_AA A 33 ? A 52 ? A 34 ? A 51 ? 1 A C 34 1_555 A G 51 1_555 A A 35 1_555 A U 50 1_555 -0.134 -1.658 3.256 1.678 5.359 30.913 -4.021 0.547 2.923 9.951 -3.115 31.406 21 AA_C34A35:U50G51_AA A 34 ? A 51 ? A 35 ? A 50 ? 1 A A 35 1_555 A U 50 1_555 A C 36 1_555 A G 49 1_555 -0.035 -1.534 3.210 0.579 2.143 35.950 -2.776 0.136 3.115 3.468 -0.938 36.016 22 AA_A35C36:G49U50_AA A 35 ? A 50 ? A 36 ? A 49 ? 1 A C 36 1_555 A G 49 1_555 A A 37 1_555 A G 48 1_555 0.071 -1.706 3.402 5.945 7.871 32.824 -4.119 0.801 2.897 13.552 -10.236 34.235 23 AA_C36A37:G48G49_AA A 36 ? A 49 ? A 37 ? A 48 ? 1 A A 37 1_555 A G 48 1_555 A A 38 1_555 A U 47 1_555 0.131 -1.634 2.853 -6.628 12.465 28.338 -4.779 -1.186 1.907 23.692 12.598 31.595 24 AA_A37A38:U47G48_AA A 37 ? A 48 ? A 38 ? A 47 ? 1 A A 38 1_555 A U 47 1_555 A C 39 1_555 A G 46 1_555 0.432 -1.542 3.240 1.017 6.832 34.432 -3.527 -0.571 2.902 11.399 -1.697 35.097 25 AA_A38C39:G46U47_AA A 38 ? A 47 ? A 39 ? A 46 ? 1 A C 39 1_555 A G 46 1_555 A C 40 1_555 A G 45 1_555 -0.010 -1.778 3.154 -0.758 10.777 31.015 -4.773 -0.096 2.417 19.430 1.367 32.799 26 AA_C39C40:G45G46_AA A 39 ? A 46 ? A 40 ? A 45 ? 1 A C 40 1_555 A G 45 1_555 A U 41 1_555 A G 44 1_555 -1.963 -0.403 3.574 19.187 20.046 103.682 -0.538 1.500 3.207 12.598 -12.059 106.286 27 AA_C40U41:G44G45_AA A 40 ? A 45 ? A 41 ? A 44 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 5R35GM126942 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 75N93022C00036 2 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE II' ? Bruker 600 ? 2 'AVANCE II' ? Bruker 800 ? # _atom_sites.entry_id 9BLM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #