data_9BNI # _entry.id 9BNI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.396 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9BNI pdb_00009bni 10.2210/pdb9bni/pdb WWPDB D_1000283647 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-09-04 2 'Structure model' 2 0 2024-09-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Author supporting evidence' 4 2 'Structure model' 'Data collection' 5 2 'Structure model' 'Database references' 6 2 'Structure model' 'Derived calculations' 7 2 'Structure model' 'Non-polymer description' 8 2 'Structure model' Other 9 2 'Structure model' 'Polymer sequence' 10 2 'Structure model' 'Refinement description' 11 2 'Structure model' 'Source and taxonomy' 12 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' cell 4 2 'Structure model' chem_comp 5 2 'Structure model' chem_comp_atom 6 2 'Structure model' chem_comp_bond 7 2 'Structure model' entity 8 2 'Structure model' entity_poly 9 2 'Structure model' entity_poly_seq 10 2 'Structure model' pdbx_entity_instance_feature 11 2 'Structure model' pdbx_entity_nonpoly 12 2 'Structure model' pdbx_entity_src_syn 13 2 'Structure model' pdbx_nonpoly_scheme 14 2 'Structure model' pdbx_poly_seq_scheme 15 2 'Structure model' pdbx_struct_assembly_gen 16 2 'Structure model' pdbx_struct_conn_angle 17 2 'Structure model' pdbx_struct_special_symmetry 18 2 'Structure model' pdbx_validate_symm_contact 19 2 'Structure model' refine 20 2 'Structure model' refine_hist 21 2 'Structure model' refine_ls_restr 22 2 'Structure model' struct_asym 23 2 'Structure model' struct_conn 24 2 'Structure model' struct_ref_seq 25 2 'Structure model' symmetry # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.auth_comp_id' 4 2 'Structure model' '_atom_site.auth_seq_id' 5 2 'Structure model' '_atom_site.label_asym_id' 6 2 'Structure model' '_atom_site.label_comp_id' 7 2 'Structure model' '_atom_site.label_entity_id' 8 2 'Structure model' '_atom_site.label_seq_id' 9 2 'Structure model' '_atom_site.occupancy' 10 2 'Structure model' '_atom_site_anisotrop.U[1][1]' 11 2 'Structure model' '_atom_site_anisotrop.U[1][2]' 12 2 'Structure model' '_atom_site_anisotrop.U[1][3]' 13 2 'Structure model' '_atom_site_anisotrop.U[2][2]' 14 2 'Structure model' '_atom_site_anisotrop.U[2][3]' 15 2 'Structure model' '_atom_site_anisotrop.U[3][3]' 16 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 17 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 18 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 19 2 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 20 2 'Structure model' '_atom_site_anisotrop.pdbx_label_seq_id' 21 2 'Structure model' '_cell.volume' 22 2 'Structure model' '_chem_comp.formula' 23 2 'Structure model' '_chem_comp.formula_weight' 24 2 'Structure model' '_chem_comp.id' 25 2 'Structure model' '_chem_comp.name' 26 2 'Structure model' '_entity_poly.nstd_monomer' 27 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 28 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 29 2 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 30 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 31 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 32 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 33 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 34 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 35 2 'Structure model' '_pdbx_struct_special_symmetry.auth_seq_id' 36 2 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 37 2 'Structure model' '_pdbx_validate_symm_contact.auth_atom_id_1' 38 2 'Structure model' '_pdbx_validate_symm_contact.auth_atom_id_2' 39 2 'Structure model' '_pdbx_validate_symm_contact.auth_comp_id_1' 40 2 'Structure model' '_pdbx_validate_symm_contact.auth_comp_id_2' 41 2 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_1' 42 2 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_2' 43 2 'Structure model' '_pdbx_validate_symm_contact.site_symmetry_2' 44 2 'Structure model' '_refine.ls_R_factor_R_free' 45 2 'Structure model' '_refine.ls_R_factor_R_work' 46 2 'Structure model' '_refine.ls_number_reflns_R_work' 47 2 'Structure model' '_refine.overall_SU_ML' 48 2 'Structure model' '_refine.pdbx_overall_phase_error' 49 2 'Structure model' '_refine.pdbx_stereochemistry_target_values' 50 2 'Structure model' '_refine_hist.pdbx_number_atoms_ligand' 51 2 'Structure model' '_refine_hist.pdbx_number_atoms_protein' 52 2 'Structure model' '_refine_ls_restr.dev_ideal' 53 2 'Structure model' '_refine_ls_restr.number' 54 2 'Structure model' '_refine_ls_restr.type' 55 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 56 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 57 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 58 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 59 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 60 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 61 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 62 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 63 2 'Structure model' '_struct_ref_seq.db_align_end' 64 2 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 65 2 'Structure model' '_struct_ref_seq.seq_align_end' 66 2 'Structure model' '_symmetry.space_group_name_Hall' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9BNI _pdbx_database_status.recvd_initial_deposition_date 2024-05-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email andyn@uic.edu _pdbx_contact_author.name_first Andy _pdbx_contact_author.name_last Nguyen _pdbx_contact_author.name_mi I _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4137-6453 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dang, V.T.' 1 0000-0002-9386-841X 'Nguyen, A.' 2 0000-0003-4137-6453 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistry _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0947-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first e202402101 _citation.page_last e202402101 _citation.title 'Crystallography reveals metal-triggered restructuring of beta-hairpins.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/chem.202402101 _citation.pdbx_database_id_PubMed 39152095 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dang, V.T.' 1 ? primary 'Engineer, A.' 2 ? primary 'McElheny, D.' 3 ? primary 'Drena, A.' 4 ? primary 'Telser, J.' 5 ? primary 'Tomczak, K.' 6 ? primary 'Nguyen, A.I.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Cu-TZ4H-H3AH10D tryptophan zipper metallo-beta-sheet peptide' 1610.734 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'COPPER (II) ION' 63.546 1 ? ? ? ? 4 non-polymer syn 'HEXAETHYLENE GLYCOL' 282.331 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 6 water nat water 18.015 11 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'SWAWHNGKWDWH(NH2)' _entity_poly.pdbx_seq_one_letter_code_can SWAWHNGKWDWHX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'COPPER (II) ION' CU 4 'HEXAETHYLENE GLYCOL' P6G 5 'SULFATE ION' SO4 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TRP n 1 3 ALA n 1 4 TRP n 1 5 HIS n 1 6 ASN n 1 7 GLY n 1 8 LYS n 1 9 TRP n 1 10 ASP n 1 11 TRP n 1 12 HIS n 1 13 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 P6G non-polymer . 'HEXAETHYLENE GLYCOL' 'POLYETHYLENE GLYCOL PEG400' 'C12 H26 O7' 282.331 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 TRP 2 2 2 TRP TRP A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 TRP 4 4 4 TRP TRP A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 NH2 13 13 13 NH2 NH2 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 101 102 CL CL A . C 3 CU 1 102 103 CU CU A . D 4 P6G 1 103 104 P6G P6G A . E 5 SO4 1 104 105 SO4 SO4 A . F 5 SO4 1 105 106 SO4 SO4 A . G 5 SO4 1 106 107 SO4 SO4 A . H 6 HOH 1 201 201 HOH HOH A . H 6 HOH 2 202 202 HOH HOH A . H 6 HOH 3 203 203 HOH HOH A . H 6 HOH 4 204 204 HOH HOH A . H 6 HOH 5 205 205 HOH HOH A . H 6 HOH 6 206 206 HOH HOH A . H 6 HOH 7 207 207 HOH HOH A . H 6 HOH 8 208 208 HOH HOH A . H 6 HOH 9 209 209 HOH HOH A . H 6 HOH 10 210 210 HOH HOH A . H 6 HOH 11 211 211 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 9BNI _cell.length_a 45.518 _cell.length_b 45.518 _cell.length_c 45.518 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BNI _symmetry.space_group_name_H-M 'I 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9BNI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.8 M Ammonium Sulfate 0.1 M BIS-TRIS pH6.5 2% v/v PEG Monomethyl Ether 550 ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-02-15 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator Kohzu _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 16.94 _reflns.entry_id 9BNI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.2 _reflns.d_resolution_low 22.76 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5049 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.98 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 39.6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.68 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.2 _reflns_shell.d_res_low 1.243 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 492 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.781 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 9BNI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5049 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.76 _refine.ls_d_res_high 1.20 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.170 _refine.ls_R_factor_R_free 0.210 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 501 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 29.85 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'GEOSTD + MONOMER LIBRARY + CDL V1.2' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.159 _refine.pdbx_overall_phase_error 31.964 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 117 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 164 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 22.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 177 'X-RAY DIFFRACTION' ? f_angle_d 2.009 ? ? 242 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.118 ? ? 25 'X-RAY DIFFRACTION' ? f_chiral_restr 0.098 ? ? 13 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 24 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.2000 1.2430 492 0.3043 100.00 0.3418 . . 49 . . 'X-RAY DIFFRACTION' . 1.2600 1.3400 1227 0.2832 100.00 0.3446 . . 133 . . 'X-RAY DIFFRACTION' . 1.3400 1.4500 1194 0.2120 100.00 0.3354 . . 130 . . 'X-RAY DIFFRACTION' . 1.4500 1.5900 1257 0.2029 100.00 0.2551 . . 136 . . 'X-RAY DIFFRACTION' . 1.5900 1.8200 1231 0.2089 100.00 0.1958 . . 128 . . 'X-RAY DIFFRACTION' . 1.8300 2.2900 1226 0.1720 100.00 0.1764 . . 134 . . 'X-RAY DIFFRACTION' . 2.3000 22.7600 1227 0.1367 100.00 0.1929 . . 141 . . # _struct.entry_id 9BNI _struct.title 'X-ray crystal structure of Cu-TZ4H-H3AH10D tryptophan zipper metallo-beta-sheet peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9BNI _struct_keywords.text 'beta-sheet, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9BNI _struct_ref.pdbx_db_accession 9BNI _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9BNI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9BNI _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 13 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2340 ? 1 MORE -134 ? 1 'SSA (A^2)' 3830 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_656 -z+1,x+1/2,-y+3/2 0.0000000000 0.0000000000 -1.0000000000 45.5180000000 1.0000000000 0.0000000000 0.0000000000 22.7590000000 0.0000000000 -1.0000000000 0.0000000000 68.2770000000 3 'crystal symmetry operation' 11_466 y-1/2,-z+3/2,-x+1 0.0000000000 1.0000000000 0.0000000000 -22.7590000000 0.0000000000 0.0000000000 -1.0000000000 68.2770000000 -1.0000000000 0.0000000000 0.0000000000 45.5180000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 12 C ? ? ? 1_555 A NH2 13 N ? ? A HIS 12 A NH2 13 1_555 ? ? ? ? ? ? ? 1.431 ? ? metalc1 metalc ? ? A SER 1 N ? ? ? 1_555 C CU . CU ? ? A SER 1 A CU 102 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc2 metalc ? ? A SER 1 OG ? ? ? 1_555 C CU . CU ? ? A SER 1 A CU 102 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc3 metalc ? ? A HIS 5 NE2 ? ? ? 1_555 C CU . CU ? ? A HIS 5 A CU 102 16_566 ? ? ? ? ? ? ? 2.060 ? ? metalc4 metalc ? ? A HIS 12 ND1 ? ? ? 1_555 C CU . CU ? ? A HIS 12 A CU 102 1_555 ? ? ? ? ? ? ? 1.948 ? ? metalc5 metalc ? ? C CU . CU ? ? ? 1_555 F SO4 . O1 ? ? A CU 102 A SO4 105 1_555 ? ? ? ? ? ? ? 2.152 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A SER 1 ? A SER 1 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 OG ? A SER 1 ? A SER 1 ? 1_555 86.5 ? 2 N ? A SER 1 ? A SER 1 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 NE2 ? A HIS 5 ? A HIS 5 ? 1_555 127.7 ? 3 OG ? A SER 1 ? A SER 1 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 NE2 ? A HIS 5 ? A HIS 5 ? 1_555 102.7 ? 4 N ? A SER 1 ? A SER 1 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 ND1 ? A HIS 12 ? A HIS 12 ? 1_555 89.8 ? 5 OG ? A SER 1 ? A SER 1 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 ND1 ? A HIS 12 ? A HIS 12 ? 1_555 175.5 ? 6 NE2 ? A HIS 5 ? A HIS 5 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 ND1 ? A HIS 12 ? A HIS 12 ? 1_555 77.6 ? 7 N ? A SER 1 ? A SER 1 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 O1 ? F SO4 . ? A SO4 105 ? 1_555 103.0 ? 8 OG ? A SER 1 ? A SER 1 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 O1 ? F SO4 . ? A SO4 105 ? 1_555 88.9 ? 9 NE2 ? A HIS 5 ? A HIS 5 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 O1 ? F SO4 . ? A SO4 105 ? 1_555 128.1 ? 10 ND1 ? A HIS 12 ? A HIS 12 ? 1_555 CU ? C CU . ? A CU 102 ? 1_555 O1 ? F SO4 . ? A SO4 105 ? 1_555 94.4 ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 2 ? HIS A 5 ? TRP A 2 HIS A 5 AA1 2 LYS A 8 ? TRP A 11 ? LYS A 8 TRP A 11 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ALA _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ASP _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 10 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASP _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 10 # _pdbx_entry_details.entry_id 9BNI _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O1 A P6G 103 ? ? 1_555 C2 A P6G 103 ? ? 15_556 1.42 2 1 NZ A LYS 8 ? ? 1_555 O1 A SO4 104 ? ? 5_555 2.17 3 1 O1 A P6G 103 ? ? 1_555 C3 A P6G 103 ? ? 15_556 2.17 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 101 ? B CL . 2 1 A P6G 103 ? D P6G . 3 1 A SO4 104 ? E SO4 . 4 1 A SO4 106 ? G SO4 . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 z,x,y 3 y,z,x 4 -y,-z+1/2,x 5 z,-x,-y+1/2 6 -y+1/2,z,-x 7 -z,-x+1/2,y 8 -z+1/2,x,-y 9 y,-z,-x+1/2 10 x,-y,-z+1/2 11 -x+1/2,y,-z 12 -x,-y+1/2,z 13 x+1/2,y+1/2,z+1/2 14 z+1/2,x+1/2,y+1/2 15 y+1/2,z+1/2,x+1/2 16 -y+1/2,-z+1,x+1/2 17 z+1/2,-x+1/2,-y+1 18 -y+1,z+1/2,-x+1/2 19 -z+1/2,-x+1,y+1/2 20 -z+1,x+1/2,-y+1/2 21 y+1/2,-z+1/2,-x+1 22 x+1/2,-y+1/2,-z+1 23 -x+1,y+1/2,-z+1/2 24 -x+1/2,-y+1,z+1/2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CL CL CL N N 47 CU CU CU N N 48 GLY N N N N 49 GLY CA C N N 50 GLY C C N N 51 GLY O O N N 52 GLY OXT O N N 53 GLY H H N N 54 GLY H2 H N N 55 GLY HA2 H N N 56 GLY HA3 H N N 57 GLY HXT H N N 58 HIS N N N N 59 HIS CA C N S 60 HIS C C N N 61 HIS O O N N 62 HIS CB C N N 63 HIS CG C Y N 64 HIS ND1 N Y N 65 HIS CD2 C Y N 66 HIS CE1 C Y N 67 HIS NE2 N Y N 68 HIS OXT O N N 69 HIS H H N N 70 HIS H2 H N N 71 HIS HA H N N 72 HIS HB2 H N N 73 HIS HB3 H N N 74 HIS HD1 H N N 75 HIS HD2 H N N 76 HIS HE1 H N N 77 HIS HE2 H N N 78 HIS HXT H N N 79 HOH O O N N 80 HOH H1 H N N 81 HOH H2 H N N 82 LYS N N N N 83 LYS CA C N S 84 LYS C C N N 85 LYS O O N N 86 LYS CB C N N 87 LYS CG C N N 88 LYS CD C N N 89 LYS CE C N N 90 LYS NZ N N N 91 LYS OXT O N N 92 LYS H H N N 93 LYS H2 H N N 94 LYS HA H N N 95 LYS HB2 H N N 96 LYS HB3 H N N 97 LYS HG2 H N N 98 LYS HG3 H N N 99 LYS HD2 H N N 100 LYS HD3 H N N 101 LYS HE2 H N N 102 LYS HE3 H N N 103 LYS HZ1 H N N 104 LYS HZ2 H N N 105 LYS HZ3 H N N 106 LYS HXT H N N 107 NH2 N N N N 108 NH2 HN1 H N N 109 NH2 HN2 H N N 110 P6G O1 O N N 111 P6G C2 C N N 112 P6G C3 C N N 113 P6G O4 O N N 114 P6G C5 C N N 115 P6G C6 C N N 116 P6G O7 O N N 117 P6G C8 C N N 118 P6G C9 C N N 119 P6G O10 O N N 120 P6G C11 C N N 121 P6G C12 C N N 122 P6G O13 O N N 123 P6G C14 C N N 124 P6G C15 C N N 125 P6G O16 O N N 126 P6G C17 C N N 127 P6G C18 C N N 128 P6G O19 O N N 129 P6G H1 H N N 130 P6G H21 H N N 131 P6G H22 H N N 132 P6G H31 H N N 133 P6G H32 H N N 134 P6G H51 H N N 135 P6G H52 H N N 136 P6G H61 H N N 137 P6G H62 H N N 138 P6G H81 H N N 139 P6G H82 H N N 140 P6G H91 H N N 141 P6G H92 H N N 142 P6G H111 H N N 143 P6G H112 H N N 144 P6G H121 H N N 145 P6G H122 H N N 146 P6G H141 H N N 147 P6G H142 H N N 148 P6G H151 H N N 149 P6G H152 H N N 150 P6G H171 H N N 151 P6G H172 H N N 152 P6G H181 H N N 153 P6G H182 H N N 154 P6G H19 H N N 155 SER N N N N 156 SER CA C N S 157 SER C C N N 158 SER O O N N 159 SER CB C N N 160 SER OG O N N 161 SER OXT O N N 162 SER H H N N 163 SER H2 H N N 164 SER HA H N N 165 SER HB2 H N N 166 SER HB3 H N N 167 SER HG H N N 168 SER HXT H N N 169 SO4 S S N N 170 SO4 O1 O N N 171 SO4 O2 O N N 172 SO4 O3 O N N 173 SO4 O4 O N N 174 TRP N N N N 175 TRP CA C N S 176 TRP C C N N 177 TRP O O N N 178 TRP CB C N N 179 TRP CG C Y N 180 TRP CD1 C Y N 181 TRP CD2 C Y N 182 TRP NE1 N Y N 183 TRP CE2 C Y N 184 TRP CE3 C Y N 185 TRP CZ2 C Y N 186 TRP CZ3 C Y N 187 TRP CH2 C Y N 188 TRP OXT O N N 189 TRP H H N N 190 TRP H2 H N N 191 TRP HA H N N 192 TRP HB2 H N N 193 TRP HB3 H N N 194 TRP HD1 H N N 195 TRP HE1 H N N 196 TRP HE3 H N N 197 TRP HZ2 H N N 198 TRP HZ3 H N N 199 TRP HH2 H N N 200 TRP HXT H N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLY N CA sing N N 44 GLY N H sing N N 45 GLY N H2 sing N N 46 GLY CA C sing N N 47 GLY CA HA2 sing N N 48 GLY CA HA3 sing N N 49 GLY C O doub N N 50 GLY C OXT sing N N 51 GLY OXT HXT sing N N 52 HIS N CA sing N N 53 HIS N H sing N N 54 HIS N H2 sing N N 55 HIS CA C sing N N 56 HIS CA CB sing N N 57 HIS CA HA sing N N 58 HIS C O doub N N 59 HIS C OXT sing N N 60 HIS CB CG sing N N 61 HIS CB HB2 sing N N 62 HIS CB HB3 sing N N 63 HIS CG ND1 sing Y N 64 HIS CG CD2 doub Y N 65 HIS ND1 CE1 doub Y N 66 HIS ND1 HD1 sing N N 67 HIS CD2 NE2 sing Y N 68 HIS CD2 HD2 sing N N 69 HIS CE1 NE2 sing Y N 70 HIS CE1 HE1 sing N N 71 HIS NE2 HE2 sing N N 72 HIS OXT HXT sing N N 73 HOH O H1 sing N N 74 HOH O H2 sing N N 75 LYS N CA sing N N 76 LYS N H sing N N 77 LYS N H2 sing N N 78 LYS CA C sing N N 79 LYS CA CB sing N N 80 LYS CA HA sing N N 81 LYS C O doub N N 82 LYS C OXT sing N N 83 LYS CB CG sing N N 84 LYS CB HB2 sing N N 85 LYS CB HB3 sing N N 86 LYS CG CD sing N N 87 LYS CG HG2 sing N N 88 LYS CG HG3 sing N N 89 LYS CD CE sing N N 90 LYS CD HD2 sing N N 91 LYS CD HD3 sing N N 92 LYS CE NZ sing N N 93 LYS CE HE2 sing N N 94 LYS CE HE3 sing N N 95 LYS NZ HZ1 sing N N 96 LYS NZ HZ2 sing N N 97 LYS NZ HZ3 sing N N 98 LYS OXT HXT sing N N 99 NH2 N HN1 sing N N 100 NH2 N HN2 sing N N 101 P6G O1 C2 sing N N 102 P6G O1 H1 sing N N 103 P6G C2 C3 sing N N 104 P6G C2 H21 sing N N 105 P6G C2 H22 sing N N 106 P6G C3 O4 sing N N 107 P6G C3 H31 sing N N 108 P6G C3 H32 sing N N 109 P6G O4 C5 sing N N 110 P6G C5 C6 sing N N 111 P6G C5 H51 sing N N 112 P6G C5 H52 sing N N 113 P6G C6 O7 sing N N 114 P6G C6 H61 sing N N 115 P6G C6 H62 sing N N 116 P6G O7 C8 sing N N 117 P6G C8 C9 sing N N 118 P6G C8 H81 sing N N 119 P6G C8 H82 sing N N 120 P6G C9 O10 sing N N 121 P6G C9 H91 sing N N 122 P6G C9 H92 sing N N 123 P6G O10 C11 sing N N 124 P6G C11 C12 sing N N 125 P6G C11 H111 sing N N 126 P6G C11 H112 sing N N 127 P6G C12 O13 sing N N 128 P6G C12 H121 sing N N 129 P6G C12 H122 sing N N 130 P6G O13 C14 sing N N 131 P6G C14 C15 sing N N 132 P6G C14 H141 sing N N 133 P6G C14 H142 sing N N 134 P6G C15 O16 sing N N 135 P6G C15 H151 sing N N 136 P6G C15 H152 sing N N 137 P6G O16 C17 sing N N 138 P6G C17 C18 sing N N 139 P6G C17 H171 sing N N 140 P6G C17 H172 sing N N 141 P6G C18 O19 sing N N 142 P6G C18 H181 sing N N 143 P6G C18 H182 sing N N 144 P6G O19 H19 sing N N 145 SER N CA sing N N 146 SER N H sing N N 147 SER N H2 sing N N 148 SER CA C sing N N 149 SER CA CB sing N N 150 SER CA HA sing N N 151 SER C O doub N N 152 SER C OXT sing N N 153 SER CB OG sing N N 154 SER CB HB2 sing N N 155 SER CB HB3 sing N N 156 SER OG HG sing N N 157 SER OXT HXT sing N N 158 SO4 S O1 doub N N 159 SO4 S O2 doub N N 160 SO4 S O3 sing N N 161 SO4 S O4 sing N N 162 TRP N CA sing N N 163 TRP N H sing N N 164 TRP N H2 sing N N 165 TRP CA C sing N N 166 TRP CA CB sing N N 167 TRP CA HA sing N N 168 TRP C O doub N N 169 TRP C OXT sing N N 170 TRP CB CG sing N N 171 TRP CB HB2 sing N N 172 TRP CB HB3 sing N N 173 TRP CG CD1 doub Y N 174 TRP CG CD2 sing Y N 175 TRP CD1 NE1 sing Y N 176 TRP CD1 HD1 sing N N 177 TRP CD2 CE2 doub Y N 178 TRP CD2 CE3 sing Y N 179 TRP NE1 CE2 sing Y N 180 TRP NE1 HE1 sing N N 181 TRP CE2 CZ2 sing Y N 182 TRP CE3 CZ3 doub Y N 183 TRP CE3 HE3 sing N N 184 TRP CZ2 CH2 doub Y N 185 TRP CZ2 HZ2 sing N N 186 TRP CZ3 CH2 sing Y N 187 TRP CZ3 HZ3 sing N N 188 TRP CH2 HH2 sing N N 189 TRP OXT HXT sing N N 190 # _pdbx_audit_support.funding_organization 'Department of Energy (DOE, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number DE-AC02-06CH11357 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'Model solved from SAD phasing at 1.362460 wavelength' # _space_group.name_H-M_alt 'I 21 3' _space_group.name_Hall 'I 2b 2c 3' _space_group.IT_number 199 _space_group.crystal_system cubic _space_group.id 1 # _atom_sites.entry_id 9BNI _atom_sites.fract_transf_matrix[1][1] 0.021969 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021969 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021969 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CL ? ? 9.50761 7.44341 ? ? 1.04373 23.83732 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CU ? ? 23.42449 5.47274 ? ? 2.18335 24.96234 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_