HEADER DE NOVO PROTEIN 24-MAY-24 9C04 TITLE UIC-1 SOAKED IN EQUIMOLAR TOLUENE, PARA-XYLENE, AND ETHYLBENZENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UIC-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS SYNTHETIC CONSTRUCT, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.L.HEINZ-KUNERT REVDAT 1 26-NOV-25 9C04 0 JRNL AUTH S.L.HEINZ-KUNERT,A.I.NGUYEN JRNL TITL EVOLVABLE CONFORMATIONAL DIVERSITY IN ASSEMBLIES OF SHORT JRNL TITL 2 PEPTIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 6805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.090 REMARK 3 R VALUE (WORKING SET) : 0.088 REMARK 3 FREE R VALUE : 0.109 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.6300 - 1.9500 0.95 1249 147 0.0915 0.1214 REMARK 3 2 1.9500 - 1.5500 0.99 1333 139 0.0895 0.0924 REMARK 3 3 1.5500 - 1.3600 0.99 1295 154 0.0908 0.1012 REMARK 3 4 1.3600 - 1.2300 0.97 1275 143 0.0834 0.0966 REMARK 3 5 1.2300 - 1.1400 0.97 1278 146 0.0753 0.1054 REMARK 3 6 1.1400 - 1.0800 0.95 1270 134 0.0811 0.0936 REMARK 3 7 1.0800 - 1.0200 0.98 1296 151 0.0828 0.1266 REMARK 3 8 1.0200 - 0.9800 0.94 1273 130 0.0859 0.0966 REMARK 3 9 0.9800 - 0.9400 0.95 1281 145 0.0965 0.1343 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.037 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.923 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 227 REMARK 3 ANGLE : 2.192 302 REMARK 3 CHIRALITY : 0.036 14 REMARK 3 PLANARITY : 0.008 35 REMARK 3 DIHEDRAL : 36.732 33 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9C04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1000284182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.688801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6805 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.940 REMARK 200 RESOLUTION RANGE LOW (A) : 13.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.08306 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 17.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACETONITRILE AND WATER, SLOW COOLING, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 6.71200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 9C04 A 2 10 PDB 9C04 9C04 2 10 SEQRES 1 A 9 LEU AIB ALA AIB LEU AIB GLN AIB LEU HET AIB A 3 13 HET AIB A 5 13 HET AIB A 7 13 HET AIB A 9 13 HET I77 A 101 58 HET I6W A 102 60 HET PYJ A 103 36 HET PXY A 104 18 HET MBN A 105 30 HET PXY A 106 18 HET MBN A 107 15 HET PYJ A 108 18 HETNAM AIB ALPHA-AMINOISOBUTYRIC ACID HETNAM I77 5'-(HYDRAZINECARBONYL)[2,2'-BIPYRIDINE]-5-CARBOXAMIDE HETNAM I6W ETHYL 5'-FORMYL[2,2'-BIPYRIDINE]-5-CARBOXYLATE HETNAM PYJ PHENYLETHANE HETNAM PXY PARA-XYLENE HETNAM MBN TOLUENE FORMUL 1 AIB 4(C4 H9 N O2) FORMUL 2 I77 C12 H11 N5 O2 FORMUL 3 I6W C14 H12 N2 O4 FORMUL 4 PYJ 2(C8 H10) FORMUL 5 PXY 2(C8 H10) FORMUL 6 MBN 2(C7 H8) FORMUL 10 HOH *(H2 O) HELIX 1 AA1 LEU A 2 GLN A 8 1 7 LINK C ALEU A 2 N AIB A 3 1555 1555 1.33 LINK C BLEU A 2 N AIB A 3 1555 1555 1.33 LINK N ALEU A 2 C02AI6W A 102 1555 1555 1.42 LINK N BLEU A 2 C02BI6W A 102 1555 1555 1.43 LINK C AIB A 3 N ALA A 4 1555 1555 1.33 LINK C ALA A 4 N AIB A 5 1555 1555 1.33 LINK C AIB A 5 N ALEU A 6 1555 1555 1.34 LINK C AIB A 5 N BLEU A 6 1555 1555 1.34 LINK C ALEU A 6 N AIB A 7 1555 1555 1.33 LINK C BLEU A 6 N AIB A 7 1555 1555 1.33 LINK C AIB A 7 N GLN A 8 1555 1555 1.33 LINK C GLN A 8 N AIB A 9 1555 1555 1.34 LINK C AIB A 9 N ALEU A 10 1555 1555 1.34 LINK C AIB A 9 N BLEU A 10 1555 1555 1.33 LINK C ALEU A 10 N15AI77 A 101 1555 1555 1.42 LINK C BLEU A 10 N15BI77 A 101 1555 1555 1.42 CRYST1 13.905 13.424 28.803 90.00 101.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.071917 0.000000 0.014645 0.00000 SCALE2 0.000000 0.074493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035431 0.00000 CONECT 1 261 CONECT 2 262 CONECT 5 39 CONECT 6 39 CONECT 39 5 6 40 45 CONECT 40 39 41 43 44 CONECT 41 40 42 52 CONECT 42 41 CONECT 43 40 46 47 48 CONECT 44 40 49 50 51 CONECT 45 39 CONECT 46 43 CONECT 47 43 CONECT 48 43 CONECT 49 44 CONECT 50 44 CONECT 51 44 CONECT 52 41 CONECT 54 62 CONECT 62 54 63 68 CONECT 63 62 64 66 67 CONECT 64 63 65 75 76 CONECT 65 64 CONECT 66 63 69 70 71 CONECT 67 63 72 73 74 CONECT 68 62 CONECT 69 66 CONECT 70 66 CONECT 71 66 CONECT 72 67 CONECT 73 67 CONECT 74 67 CONECT 75 64 CONECT 76 64 CONECT 79 113 CONECT 80 113 CONECT 113 79 80 114 119 CONECT 114 113 115 117 118 CONECT 115 114 116 126 CONECT 116 115 CONECT 117 114 120 121 122 CONECT 118 114 123 124 125 CONECT 119 113 CONECT 120 117 CONECT 121 117 CONECT 122 117 CONECT 123 118 CONECT 124 118 CONECT 125 118 CONECT 126 115 CONECT 128 143 CONECT 143 128 144 149 CONECT 144 143 145 147 148 CONECT 145 144 146 156 157 CONECT 146 145 CONECT 147 144 150 151 152 CONECT 148 144 153 154 155 CONECT 149 143 CONECT 150 147 CONECT 151 147 CONECT 152 147 CONECT 153 148 CONECT 154 148 CONECT 155 148 CONECT 156 145 CONECT 157 145 CONECT 160 227 CONECT 161 228 CONECT 195 197 223 233 CONECT 196 198 224 234 CONECT 197 195 199 201 CONECT 198 196 200 202 CONECT 199 197 225 229 CONECT 200 198 226 230 CONECT 201 197 203 235 CONECT 202 198 204 236 CONECT 203 201 217 237 CONECT 204 202 218 238 CONECT 205 207 219 231 CONECT 206 208 220 232 CONECT 207 205 209 213 CONECT 208 206 210 214 CONECT 209 207 211 239 CONECT 210 208 212 240 CONECT 211 209 215 241 CONECT 212 210 216 242 CONECT 213 207 221 243 CONECT 214 208 222 244 CONECT 215 211 217 221 CONECT 216 212 218 222 CONECT 217 203 215 223 CONECT 218 204 216 224 CONECT 219 205 245 247 CONECT 220 206 246 248 CONECT 221 213 215 CONECT 222 214 216 CONECT 223 195 217 CONECT 224 196 218 CONECT 225 199 227 249 CONECT 226 200 228 250 CONECT 227 160 225 251 CONECT 228 161 226 252 CONECT 229 199 CONECT 230 200 CONECT 231 205 CONECT 232 206 CONECT 233 195 CONECT 234 196 CONECT 235 201 CONECT 236 202 CONECT 237 203 CONECT 238 204 CONECT 239 209 CONECT 240 210 CONECT 241 211 CONECT 242 212 CONECT 243 213 CONECT 244 214 CONECT 245 219 CONECT 246 220 CONECT 247 219 CONECT 248 220 CONECT 249 225 CONECT 250 226 CONECT 251 227 CONECT 252 228 CONECT 253 255 265 291 CONECT 254 256 266 292 CONECT 255 253 257 283 CONECT 256 254 258 284 CONECT 257 255 259 281 CONECT 258 256 260 282 CONECT 259 257 269 CONECT 260 258 270 CONECT 261 1 263 285 CONECT 262 2 264 286 CONECT 263 261 265 267 CONECT 264 262 266 268 CONECT 265 253 263 293 CONECT 266 254 264 294 CONECT 267 263 283 295 CONECT 268 264 284 296 CONECT 269 259 271 297 CONECT 270 260 272 298 CONECT 271 269 273 279 CONECT 272 270 274 280 CONECT 273 271 287 289 CONECT 274 272 288 290 CONECT 275 277 287 299 301 CONECT 276 278 288 300 302 CONECT 277 275 303 305 307 CONECT 278 276 304 306 308 CONECT 279 271 281 309 CONECT 280 272 282 310 CONECT 281 257 279 311 CONECT 282 258 280 312 CONECT 283 255 267 CONECT 284 256 268 CONECT 285 261 CONECT 286 262 CONECT 287 273 275 CONECT 288 274 276 CONECT 289 273 CONECT 290 274 CONECT 291 253 CONECT 292 254 CONECT 293 265 CONECT 294 266 CONECT 295 267 CONECT 296 268 CONECT 297 269 CONECT 298 270 CONECT 299 275 CONECT 300 276 CONECT 301 275 CONECT 302 276 CONECT 303 277 CONECT 304 278 CONECT 305 277 CONECT 306 278 CONECT 307 277 CONECT 308 278 CONECT 309 279 CONECT 310 280 CONECT 311 281 CONECT 312 282 CONECT 313 315 317 329 331 CONECT 314 316 318 330 332 CONECT 315 313 333 335 337 CONECT 316 314 334 336 338 CONECT 317 313 319 321 CONECT 318 314 320 322 CONECT 319 317 323 339 CONECT 320 318 324 340 CONECT 321 317 325 341 CONECT 322 318 326 342 CONECT 323 319 327 343 CONECT 324 320 328 344 CONECT 325 321 327 345 CONECT 326 322 328 346 CONECT 327 323 325 347 CONECT 328 324 326 348 CONECT 329 313 CONECT 330 314 CONECT 331 313 CONECT 332 314 CONECT 333 315 CONECT 334 316 CONECT 335 315 CONECT 336 316 CONECT 337 315 CONECT 338 316 CONECT 339 319 CONECT 340 320 CONECT 341 321 CONECT 342 322 CONECT 343 323 CONECT 344 324 CONECT 345 325 CONECT 346 326 CONECT 347 327 CONECT 348 328 CONECT 349 350 354 355 CONECT 350 349 351 357 CONECT 351 350 352 358 CONECT 352 351 353 356 CONECT 353 352 354 359 CONECT 354 349 353 360 CONECT 355 349 361 362 363 CONECT 356 352 364 365 366 CONECT 357 350 CONECT 358 351 CONECT 359 353 CONECT 360 354 CONECT 361 355 CONECT 362 355 CONECT 363 355 CONECT 364 356 CONECT 365 356 CONECT 366 356 CONECT 367 369 381 383 385 CONECT 368 370 382 384 386 CONECT 369 367 371 379 CONECT 370 368 372 380 CONECT 371 369 373 387 CONECT 372 370 374 388 CONECT 373 371 375 389 CONECT 374 372 376 390 CONECT 375 373 377 391 CONECT 376 374 378 392 CONECT 377 375 379 393 CONECT 378 376 380 394 CONECT 379 369 377 395 CONECT 380 370 378 396 CONECT 381 367 CONECT 382 368 CONECT 383 367 CONECT 384 368 CONECT 385 367 CONECT 386 368 CONECT 387 371 CONECT 388 372 CONECT 389 373 CONECT 390 374 CONECT 391 375 CONECT 392 376 CONECT 393 377 CONECT 394 378 CONECT 395 379 CONECT 396 380 CONECT 397 398 402 403 CONECT 398 397 399 405 CONECT 399 398 400 406 CONECT 400 399 401 404 CONECT 401 400 402 407 CONECT 402 397 401 408 CONECT 403 397 409 410 411 CONECT 404 400 412 413 414 CONECT 405 398 CONECT 406 399 CONECT 407 401 CONECT 408 402 CONECT 409 403 CONECT 410 403 CONECT 411 403 CONECT 412 404 CONECT 413 404 CONECT 414 404 CONECT 415 416 422 423 424 CONECT 416 415 417 421 CONECT 417 416 418 425 CONECT 418 417 419 426 CONECT 419 418 420 427 CONECT 420 419 421 428 CONECT 421 416 420 429 CONECT 422 415 CONECT 423 415 CONECT 424 415 CONECT 425 417 CONECT 426 418 CONECT 427 419 CONECT 428 420 CONECT 429 421 CONECT 430 431 432 438 439 CONECT 431 430 440 441 442 CONECT 432 430 433 434 CONECT 433 432 435 443 CONECT 434 432 436 444 CONECT 435 433 437 445 CONECT 436 434 437 446 CONECT 437 435 436 447 CONECT 438 430 CONECT 439 430 CONECT 440 431 CONECT 441 431 CONECT 442 431 CONECT 443 433 CONECT 444 434 CONECT 445 435 CONECT 446 436 CONECT 447 437 MASTER 189 0 12 1 0 0 0 6 147 1 321 1 END