HEADER MEMBRANE PROTEIN 03-JUN-24 9C49 TITLE CRYO-EM STRUCTURE OF DANIO RERIO VOLTAGE-SENSING PHOSPHATASE (VSP) TITLE 2 PHOSPHATASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-3,4,5-TRISPHOSPHATE 3-PHOSPHATASE COMPND 3 TPTE2; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: TRANSMEMBRANE PHOSPHATASE WITH TENSIN HOMOLOGY; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: TPTE, TPIP, VSP, WU:FD20E11, WU:FI24B06; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS PHOSPHATASE, VOLTAGE-SENSING, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.ZHANG,S.G.BROHAWN REVDAT 1 10-JUL-24 9C49 0 JRNL AUTH Y.YU,L.ZHANG,B.LI,Z.FU,S.G.BROHAWN,E.Y.ISACOFF JRNL TITL COUPLING SENSOR TO ENZYME IN THE VOLTAGE SENSING PHOSPHATASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.970 REMARK 3 NUMBER OF PARTICLES : 208690 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9C49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1000284673. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : VOLTAGE-SENSING PHOSPHATASE REMARK 245 (PHOSPHATIDYLINOSITOL-3,4,5-TRISPHOSPHATE 3-PHOSPHATASE TPTE2) REMARK 245 IN LIPID NANODISC REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 5.60 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 3S BLOT, BLOT FORCE 1 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 HIS A 5 REMARK 465 PHE A 6 REMARK 465 ASN A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 GLU A 14 REMARK 465 VAL A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 17 REMARK 465 ASN A 18 REMARK 465 SER A 19 REMARK 465 VAL A 20 REMARK 465 LYS A 21 REMARK 465 GLU A 22 REMARK 465 GLU A 23 REMARK 465 ALA A 24 REMARK 465 GLU A 25 REMARK 465 VAL A 26 REMARK 465 GLN A 27 REMARK 465 ILE A 28 REMARK 465 GLY A 29 REMARK 465 ASP A 30 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 GLU A 33 REMARK 465 GLU A 34 REMARK 465 THR A 35 REMARK 465 LYS A 36 REMARK 465 ASP A 37 REMARK 465 PRO A 38 REMARK 465 ASP A 39 REMARK 465 THR A 40 REMARK 465 MET A 41 REMARK 465 TYR A 42 REMARK 465 HIS A 43 REMARK 465 GLN A 44 REMARK 465 VAL A 45 REMARK 465 ARG A 46 REMARK 465 LYS A 47 REMARK 465 LYS A 48 REMARK 465 ILE A 49 REMARK 465 THR A 50 REMARK 465 PRO A 51 REMARK 465 PHE A 52 REMARK 465 VAL A 53 REMARK 465 MET A 54 REMARK 465 SER A 55 REMARK 465 PHE A 56 REMARK 465 GLY A 57 REMARK 465 PHE A 58 REMARK 465 ARG A 59 REMARK 465 VAL A 60 REMARK 465 PHE A 61 REMARK 465 GLY A 62 REMARK 465 LEU A 63 REMARK 465 VAL A 64 REMARK 465 LEU A 65 REMARK 465 ILE A 66 REMARK 465 ILE A 67 REMARK 465 LEU A 68 REMARK 465 ASP A 69 REMARK 465 ILE A 70 REMARK 465 ILE A 71 REMARK 465 MET A 72 REMARK 465 VAL A 73 REMARK 465 ILE A 74 REMARK 465 VAL A 75 REMARK 465 ASP A 76 REMARK 465 LEU A 77 REMARK 465 SER A 78 REMARK 465 LEU A 79 REMARK 465 SER A 80 REMARK 465 GLU A 81 REMARK 465 LYS A 82 REMARK 465 SER A 83 REMARK 465 ARG A 84 REMARK 465 ASP A 85 REMARK 465 VAL A 86 REMARK 465 GLY A 87 REMARK 465 GLY A 88 REMARK 465 ALA A 89 REMARK 465 LEU A 90 REMARK 465 GLU A 91 REMARK 465 THR A 92 REMARK 465 VAL A 93 REMARK 465 SER A 94 REMARK 465 LEU A 95 REMARK 465 VAL A 96 REMARK 465 ILE A 97 REMARK 465 SER A 98 REMARK 465 PHE A 99 REMARK 465 PHE A 100 REMARK 465 PHE A 101 REMARK 465 LEU A 102 REMARK 465 ILE A 103 REMARK 465 ASP A 104 REMARK 465 VAL A 105 REMARK 465 LEU A 106 REMARK 465 LEU A 107 REMARK 465 ARG A 108 REMARK 465 VAL A 109 REMARK 465 TYR A 110 REMARK 465 VAL A 111 REMARK 465 GLU A 112 REMARK 465 GLY A 113 REMARK 465 PHE A 114 REMARK 465 LYS A 115 REMARK 465 VAL A 116 REMARK 465 TYR A 117 REMARK 465 PHE A 118 REMARK 465 SER A 119 REMARK 465 SER A 120 REMARK 465 LYS A 121 REMARK 465 LEU A 122 REMARK 465 ASN A 123 REMARK 465 ILE A 124 REMARK 465 VAL A 125 REMARK 465 ASP A 126 REMARK 465 ALA A 127 REMARK 465 CYS A 128 REMARK 465 ILE A 129 REMARK 465 VAL A 130 REMARK 465 VAL A 131 REMARK 465 ILE A 132 REMARK 465 THR A 133 REMARK 465 LEU A 134 REMARK 465 VAL A 135 REMARK 465 VAL A 136 REMARK 465 THR A 137 REMARK 465 MET A 138 REMARK 465 ILE A 139 REMARK 465 TYR A 140 REMARK 465 ALA A 141 REMARK 465 PHE A 142 REMARK 465 SER A 143 REMARK 465 ASP A 144 REMARK 465 PHE A 145 REMARK 465 SER A 146 REMARK 465 GLY A 147 REMARK 465 ALA A 148 REMARK 465 SER A 149 REMARK 465 LEU A 150 REMARK 465 ILE A 151 REMARK 465 PRO A 152 REMARK 465 ARG A 153 REMARK 465 VAL A 154 REMARK 465 VAL A 155 REMARK 465 THR A 156 REMARK 465 PHE A 157 REMARK 465 LEU A 158 REMARK 465 ARG A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 ARG A 162 REMARK 465 ILE A 163 REMARK 465 LEU A 164 REMARK 465 ILE A 165 REMARK 465 LEU A 166 REMARK 465 VAL A 167 REMARK 465 ARG A 168 REMARK 465 ILE A 169 REMARK 465 PHE A 170 REMARK 465 ARG A 171 REMARK 465 LEU A 172 REMARK 465 ALA A 173 REMARK 465 SER A 174 REMARK 465 GLN A 175 REMARK 465 LYS A 176 REMARK 465 ARG A 177 REMARK 465 GLU A 178 REMARK 465 LEU A 179 REMARK 465 GLU A 180 REMARK 465 LYS A 181 REMARK 465 VAL A 182 REMARK 465 THR A 183 REMARK 465 ARG A 184 REMARK 465 ARG A 185 REMARK 465 MET A 186 REMARK 465 VAL A 187 REMARK 465 SER A 188 REMARK 465 GLU A 189 REMARK 465 ASN A 190 REMARK 465 LYS A 191 REMARK 465 GLN A 322 REMARK 465 PHE A 323 REMARK 465 GLU A 324 REMARK 465 SER A 325 REMARK 465 ALA A 326 REMARK 465 GLN A 327 REMARK 465 GLU A 328 REMARK 465 SER A 329 REMARK 465 LEU A 330 REMARK 465 ASP A 331 REMARK 465 TYR A 332 REMARK 465 PHE A 333 REMARK 465 GLY A 334 REMARK 465 GLU A 335 REMARK 465 ARG A 336 REMARK 465 ARG A 337 REMARK 465 THR A 338 REMARK 465 ASP A 339 REMARK 465 LYS A 340 REMARK 465 SER A 341 REMARK 465 MET A 342 REMARK 465 SER A 343 REMARK 465 SER A 344 REMARK 465 LYS A 345 REMARK 465 PHE A 346 REMARK 465 GLN A 347 REMARK 465 GLY A 348 REMARK 465 SER A 512 REMARK 465 ASN A 513 REMARK 465 SER A 514 REMARK 465 LEU A 515 REMARK 465 GLU A 516 REMARK 465 VAL A 517 REMARK 465 LEU A 518 REMARK 465 PHE A 519 REMARK 465 GLN A 520 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 HIS B 5 REMARK 465 PHE B 6 REMARK 465 ASN B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 ASP B 11 REMARK 465 SER B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 VAL B 15 REMARK 465 ASN B 16 REMARK 465 GLY B 17 REMARK 465 ASN B 18 REMARK 465 SER B 19 REMARK 465 VAL B 20 REMARK 465 LYS B 21 REMARK 465 GLU B 22 REMARK 465 GLU B 23 REMARK 465 ALA B 24 REMARK 465 GLU B 25 REMARK 465 VAL B 26 REMARK 465 GLN B 27 REMARK 465 ILE B 28 REMARK 465 GLY B 29 REMARK 465 ASP B 30 REMARK 465 GLY B 31 REMARK 465 LYS B 32 REMARK 465 GLU B 33 REMARK 465 GLU B 34 REMARK 465 THR B 35 REMARK 465 LYS B 36 REMARK 465 ASP B 37 REMARK 465 PRO B 38 REMARK 465 ASP B 39 REMARK 465 THR B 40 REMARK 465 MET B 41 REMARK 465 TYR B 42 REMARK 465 HIS B 43 REMARK 465 GLN B 44 REMARK 465 VAL B 45 REMARK 465 ARG B 46 REMARK 465 LYS B 47 REMARK 465 LYS B 48 REMARK 465 ILE B 49 REMARK 465 THR B 50 REMARK 465 PRO B 51 REMARK 465 PHE B 52 REMARK 465 VAL B 53 REMARK 465 MET B 54 REMARK 465 SER B 55 REMARK 465 PHE B 56 REMARK 465 GLY B 57 REMARK 465 PHE B 58 REMARK 465 ARG B 59 REMARK 465 VAL B 60 REMARK 465 PHE B 61 REMARK 465 GLY B 62 REMARK 465 LEU B 63 REMARK 465 VAL B 64 REMARK 465 LEU B 65 REMARK 465 ILE B 66 REMARK 465 ILE B 67 REMARK 465 LEU B 68 REMARK 465 ASP B 69 REMARK 465 ILE B 70 REMARK 465 ILE B 71 REMARK 465 MET B 72 REMARK 465 VAL B 73 REMARK 465 ILE B 74 REMARK 465 VAL B 75 REMARK 465 ASP B 76 REMARK 465 LEU B 77 REMARK 465 SER B 78 REMARK 465 LEU B 79 REMARK 465 SER B 80 REMARK 465 GLU B 81 REMARK 465 LYS B 82 REMARK 465 SER B 83 REMARK 465 ARG B 84 REMARK 465 ASP B 85 REMARK 465 VAL B 86 REMARK 465 GLY B 87 REMARK 465 GLY B 88 REMARK 465 ALA B 89 REMARK 465 LEU B 90 REMARK 465 GLU B 91 REMARK 465 THR B 92 REMARK 465 VAL B 93 REMARK 465 SER B 94 REMARK 465 LEU B 95 REMARK 465 VAL B 96 REMARK 465 ILE B 97 REMARK 465 SER B 98 REMARK 465 PHE B 99 REMARK 465 PHE B 100 REMARK 465 PHE B 101 REMARK 465 LEU B 102 REMARK 465 ILE B 103 REMARK 465 ASP B 104 REMARK 465 VAL B 105 REMARK 465 LEU B 106 REMARK 465 LEU B 107 REMARK 465 ARG B 108 REMARK 465 VAL B 109 REMARK 465 TYR B 110 REMARK 465 VAL B 111 REMARK 465 GLU B 112 REMARK 465 GLY B 113 REMARK 465 PHE B 114 REMARK 465 LYS B 115 REMARK 465 VAL B 116 REMARK 465 TYR B 117 REMARK 465 PHE B 118 REMARK 465 SER B 119 REMARK 465 SER B 120 REMARK 465 LYS B 121 REMARK 465 LEU B 122 REMARK 465 ASN B 123 REMARK 465 ILE B 124 REMARK 465 VAL B 125 REMARK 465 ASP B 126 REMARK 465 ALA B 127 REMARK 465 CYS B 128 REMARK 465 ILE B 129 REMARK 465 VAL B 130 REMARK 465 VAL B 131 REMARK 465 ILE B 132 REMARK 465 THR B 133 REMARK 465 LEU B 134 REMARK 465 VAL B 135 REMARK 465 VAL B 136 REMARK 465 THR B 137 REMARK 465 MET B 138 REMARK 465 ILE B 139 REMARK 465 TYR B 140 REMARK 465 ALA B 141 REMARK 465 PHE B 142 REMARK 465 SER B 143 REMARK 465 ASP B 144 REMARK 465 PHE B 145 REMARK 465 SER B 146 REMARK 465 GLY B 147 REMARK 465 ALA B 148 REMARK 465 SER B 149 REMARK 465 LEU B 150 REMARK 465 ILE B 151 REMARK 465 PRO B 152 REMARK 465 ARG B 153 REMARK 465 VAL B 154 REMARK 465 VAL B 155 REMARK 465 THR B 156 REMARK 465 PHE B 157 REMARK 465 LEU B 158 REMARK 465 ARG B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 ARG B 162 REMARK 465 ILE B 163 REMARK 465 LEU B 164 REMARK 465 ILE B 165 REMARK 465 LEU B 166 REMARK 465 VAL B 167 REMARK 465 ARG B 168 REMARK 465 ILE B 169 REMARK 465 PHE B 170 REMARK 465 ARG B 171 REMARK 465 LEU B 172 REMARK 465 ALA B 173 REMARK 465 SER B 174 REMARK 465 GLN B 175 REMARK 465 LYS B 176 REMARK 465 ARG B 177 REMARK 465 GLU B 178 REMARK 465 LEU B 179 REMARK 465 GLU B 180 REMARK 465 LYS B 181 REMARK 465 VAL B 182 REMARK 465 THR B 183 REMARK 465 ARG B 184 REMARK 465 ARG B 185 REMARK 465 MET B 186 REMARK 465 VAL B 187 REMARK 465 SER B 188 REMARK 465 GLU B 189 REMARK 465 ASN B 190 REMARK 465 LYS B 191 REMARK 465 GLN B 322 REMARK 465 PHE B 323 REMARK 465 GLU B 324 REMARK 465 SER B 325 REMARK 465 ALA B 326 REMARK 465 GLN B 327 REMARK 465 GLU B 328 REMARK 465 SER B 329 REMARK 465 LEU B 330 REMARK 465 ASP B 331 REMARK 465 TYR B 332 REMARK 465 PHE B 333 REMARK 465 GLY B 334 REMARK 465 GLU B 335 REMARK 465 ARG B 336 REMARK 465 ARG B 337 REMARK 465 THR B 338 REMARK 465 ASP B 339 REMARK 465 LYS B 340 REMARK 465 SER B 341 REMARK 465 MET B 342 REMARK 465 SER B 343 REMARK 465 SER B 344 REMARK 465 LYS B 345 REMARK 465 PHE B 346 REMARK 465 GLN B 347 REMARK 465 GLY B 348 REMARK 465 SER B 512 REMARK 465 ASN B 513 REMARK 465 SER B 514 REMARK 465 LEU B 515 REMARK 465 GLU B 516 REMARK 465 VAL B 517 REMARK 465 LEU B 518 REMARK 465 PHE B 519 REMARK 465 GLN B 520 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 369 OE1 GLN B 371 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 372 C LEU B 372 O 0.168 REMARK 500 PRO B 373 CG PRO B 373 CD -0.834 REMARK 500 PRO B 373 CD PRO B 373 N 0.282 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 373 C - N - CA ANGL. DEV. = -10.8 DEGREES REMARK 500 PRO B 373 C - N - CD ANGL. DEV. = 26.1 DEGREES REMARK 500 PRO B 373 CA - N - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO B 373 CA - CB - CG ANGL. DEV. = -20.3 DEGREES REMARK 500 PRO B 373 CB - CG - CD ANGL. DEV. = 73.5 DEGREES REMARK 500 PRO B 373 N - CD - CG ANGL. DEV. = -33.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 202 53.43 -91.57 REMARK 500 ASP A 255 140.15 -177.53 REMARK 500 PHE A 259 48.64 -94.41 REMARK 500 GLU A 350 -61.20 -94.46 REMARK 500 ARG A 370 42.45 38.82 REMARK 500 ASP A 438 47.42 34.88 REMARK 500 GLU A 461 24.83 49.16 REMARK 500 TRP A 468 112.36 -161.40 REMARK 500 GLU A 485 -72.25 -93.30 REMARK 500 LEU A 486 64.18 24.33 REMARK 500 ASN A 488 -49.19 110.82 REMARK 500 ASP B 202 57.86 -96.02 REMARK 500 HIS B 242 44.77 -140.10 REMARK 500 LEU B 248 52.07 -92.58 REMARK 500 ASP B 255 139.17 -177.32 REMARK 500 PHE B 259 48.08 -93.04 REMARK 500 TYR B 368 76.42 -100.87 REMARK 500 GLU B 485 -74.80 -93.92 REMARK 500 LEU B 486 66.54 25.76 REMARK 500 ASN B 488 -47.76 107.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 485 LEU A 486 138.14 REMARK 500 GLU B 485 LEU B 486 141.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-45178 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF DANIO RERIO VOLTAGE-SENSING PHOSPHATASE (VSP) REMARK 900 PHOSPHATASE DOMAIN DBREF 9C49 A 1 511 UNP Q4V9E4 Q4V9E4_DANRE 1 511 DBREF 9C49 B 1 511 UNP Q4V9E4 Q4V9E4_DANRE 1 511 SEQADV 9C49 GLY A 29 UNP Q4V9E4 ASP 29 CONFLICT SEQADV 9C49 LEU A 90 UNP Q4V9E4 PRO 90 CONFLICT SEQADV 9C49 SER A 302 UNP Q4V9E4 CYS 302 ENGINEERED MUTATION SEQADV 9C49 SER A 512 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 ASN A 513 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 SER A 514 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 LEU A 515 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 GLU A 516 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 VAL A 517 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 LEU A 518 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 PHE A 519 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 GLN A 520 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 GLY B 29 UNP Q4V9E4 ASP 29 CONFLICT SEQADV 9C49 LEU B 90 UNP Q4V9E4 PRO 90 CONFLICT SEQADV 9C49 SER B 302 UNP Q4V9E4 CYS 302 ENGINEERED MUTATION SEQADV 9C49 SER B 512 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 ASN B 513 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 SER B 514 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 LEU B 515 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 GLU B 516 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 VAL B 517 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 LEU B 518 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 PHE B 519 UNP Q4V9E4 EXPRESSION TAG SEQADV 9C49 GLN B 520 UNP Q4V9E4 EXPRESSION TAG SEQRES 1 A 520 MET THR SER VAL HIS PHE ASN PRO GLY LEU ASP SER LYS SEQRES 2 A 520 GLU VAL ASN GLY ASN SER VAL LYS GLU GLU ALA GLU VAL SEQRES 3 A 520 GLN ILE GLY ASP GLY LYS GLU GLU THR LYS ASP PRO ASP SEQRES 4 A 520 THR MET TYR HIS GLN VAL ARG LYS LYS ILE THR PRO PHE SEQRES 5 A 520 VAL MET SER PHE GLY PHE ARG VAL PHE GLY LEU VAL LEU SEQRES 6 A 520 ILE ILE LEU ASP ILE ILE MET VAL ILE VAL ASP LEU SER SEQRES 7 A 520 LEU SER GLU LYS SER ARG ASP VAL GLY GLY ALA LEU GLU SEQRES 8 A 520 THR VAL SER LEU VAL ILE SER PHE PHE PHE LEU ILE ASP SEQRES 9 A 520 VAL LEU LEU ARG VAL TYR VAL GLU GLY PHE LYS VAL TYR SEQRES 10 A 520 PHE SER SER LYS LEU ASN ILE VAL ASP ALA CYS ILE VAL SEQRES 11 A 520 VAL ILE THR LEU VAL VAL THR MET ILE TYR ALA PHE SER SEQRES 12 A 520 ASP PHE SER GLY ALA SER LEU ILE PRO ARG VAL VAL THR SEQRES 13 A 520 PHE LEU ARG SER LEU ARG ILE LEU ILE LEU VAL ARG ILE SEQRES 14 A 520 PHE ARG LEU ALA SER GLN LYS ARG GLU LEU GLU LYS VAL SEQRES 15 A 520 THR ARG ARG MET VAL SER GLU ASN LYS ARG ARG TYR GLN SEQRES 16 A 520 LYS ASP GLY PHE ASP LEU ASP LEU THR TYR VAL THR GLU SEQRES 17 A 520 ARG VAL ILE ALA MET SER PHE PRO SER SER GLY LYS GLN SEQRES 18 A 520 ALA LEU TYR ARG ASN PRO ILE ARG GLU VAL VAL ARG PHE SEQRES 19 A 520 LEU ASP THR LYS HIS MET ASP HIS TYR LYS VAL PHE ASN SEQRES 20 A 520 LEU CYS SER GLU LYS GLY TYR ASP PRO LYS PHE PHE HIS SEQRES 21 A 520 TYR ARG VAL GLU ARG VAL MET ILE ASP ASP HIS ASN VAL SEQRES 22 A 520 PRO SER LEU ASP ASP MET LEU ARG TYR THR ALA CYS VAL SEQRES 23 A 520 ARG ASP TRP MET ALA ALA ASP SER ARG ASN VAL ILE ALA SEQRES 24 A 520 ILE HIS SER LYS GLY GLY LYS GLY ARG THR GLY THR MET SEQRES 25 A 520 VAL CYS THR TRP LEU ILE ASP SER ASP GLN PHE GLU SER SEQRES 26 A 520 ALA GLN GLU SER LEU ASP TYR PHE GLY GLU ARG ARG THR SEQRES 27 A 520 ASP LYS SER MET SER SER LYS PHE GLN GLY VAL GLU THR SEQRES 28 A 520 PRO SER GLN SER ARG TYR VAL GLY TYR TYR GLU ILE MET SEQRES 29 A 520 LYS ASN GLN TYR ASN ARG GLN LEU PRO PRO ARG LYS SER SEQRES 30 A 520 LEU LYS ILE LYS SER ILE ARG ILE HIS SER ILE ALA GLY SEQRES 31 A 520 VAL GLY LYS GLY ASN GLY SER ASP LEU LYS LEU LYS ILE SEQRES 32 A 520 ILE VAL LYS HIS GLU LEU VAL PHE GLN CYS VAL CYS ALA SEQRES 33 A 520 LYS GLN HIS ASN CYS THR VAL PHE PRO ASP THR GLY SER SEQRES 34 A 520 ASN ALA VAL VAL ILE SER LEU GLN ASP GLY PRO ILE VAL SEQRES 35 A 520 THR GLY ASP VAL LYS VAL MET PHE GLU SER SER ALA GLY SEQRES 36 A 520 LEU PRO LYS GLY TYR GLU ASP CYS PRO PHE TYR PHE TRP SEQRES 37 A 520 PHE ASN THR SER PHE VAL GLU ASN TYR ARG LEU PHE LEU SEQRES 38 A 520 SER ARG GLU GLU LEU ASP ASN PRO HIS LYS PRO LYS THR SEQRES 39 A 520 TRP ASP ILE TYR LYS GLU ASP PHE GLY VAL THR LEU SER SEQRES 40 A 520 PHE THR GLU PRO SER ASN SER LEU GLU VAL LEU PHE GLN SEQRES 1 B 520 MET THR SER VAL HIS PHE ASN PRO GLY LEU ASP SER LYS SEQRES 2 B 520 GLU VAL ASN GLY ASN SER VAL LYS GLU GLU ALA GLU VAL SEQRES 3 B 520 GLN ILE GLY ASP GLY LYS GLU GLU THR LYS ASP PRO ASP SEQRES 4 B 520 THR MET TYR HIS GLN VAL ARG LYS LYS ILE THR PRO PHE SEQRES 5 B 520 VAL MET SER PHE GLY PHE ARG VAL PHE GLY LEU VAL LEU SEQRES 6 B 520 ILE ILE LEU ASP ILE ILE MET VAL ILE VAL ASP LEU SER SEQRES 7 B 520 LEU SER GLU LYS SER ARG ASP VAL GLY GLY ALA LEU GLU SEQRES 8 B 520 THR VAL SER LEU VAL ILE SER PHE PHE PHE LEU ILE ASP SEQRES 9 B 520 VAL LEU LEU ARG VAL TYR VAL GLU GLY PHE LYS VAL TYR SEQRES 10 B 520 PHE SER SER LYS LEU ASN ILE VAL ASP ALA CYS ILE VAL SEQRES 11 B 520 VAL ILE THR LEU VAL VAL THR MET ILE TYR ALA PHE SER SEQRES 12 B 520 ASP PHE SER GLY ALA SER LEU ILE PRO ARG VAL VAL THR SEQRES 13 B 520 PHE LEU ARG SER LEU ARG ILE LEU ILE LEU VAL ARG ILE SEQRES 14 B 520 PHE ARG LEU ALA SER GLN LYS ARG GLU LEU GLU LYS VAL SEQRES 15 B 520 THR ARG ARG MET VAL SER GLU ASN LYS ARG ARG TYR GLN SEQRES 16 B 520 LYS ASP GLY PHE ASP LEU ASP LEU THR TYR VAL THR GLU SEQRES 17 B 520 ARG VAL ILE ALA MET SER PHE PRO SER SER GLY LYS GLN SEQRES 18 B 520 ALA LEU TYR ARG ASN PRO ILE ARG GLU VAL VAL ARG PHE SEQRES 19 B 520 LEU ASP THR LYS HIS MET ASP HIS TYR LYS VAL PHE ASN SEQRES 20 B 520 LEU CYS SER GLU LYS GLY TYR ASP PRO LYS PHE PHE HIS SEQRES 21 B 520 TYR ARG VAL GLU ARG VAL MET ILE ASP ASP HIS ASN VAL SEQRES 22 B 520 PRO SER LEU ASP ASP MET LEU ARG TYR THR ALA CYS VAL SEQRES 23 B 520 ARG ASP TRP MET ALA ALA ASP SER ARG ASN VAL ILE ALA SEQRES 24 B 520 ILE HIS SER LYS GLY GLY LYS GLY ARG THR GLY THR MET SEQRES 25 B 520 VAL CYS THR TRP LEU ILE ASP SER ASP GLN PHE GLU SER SEQRES 26 B 520 ALA GLN GLU SER LEU ASP TYR PHE GLY GLU ARG ARG THR SEQRES 27 B 520 ASP LYS SER MET SER SER LYS PHE GLN GLY VAL GLU THR SEQRES 28 B 520 PRO SER GLN SER ARG TYR VAL GLY TYR TYR GLU ILE MET SEQRES 29 B 520 LYS ASN GLN TYR ASN ARG GLN LEU PRO PRO ARG LYS SER SEQRES 30 B 520 LEU LYS ILE LYS SER ILE ARG ILE HIS SER ILE ALA GLY SEQRES 31 B 520 VAL GLY LYS GLY ASN GLY SER ASP LEU LYS LEU LYS ILE SEQRES 32 B 520 ILE VAL LYS HIS GLU LEU VAL PHE GLN CYS VAL CYS ALA SEQRES 33 B 520 LYS GLN HIS ASN CYS THR VAL PHE PRO ASP THR GLY SER SEQRES 34 B 520 ASN ALA VAL VAL ILE SER LEU GLN ASP GLY PRO ILE VAL SEQRES 35 B 520 THR GLY ASP VAL LYS VAL MET PHE GLU SER SER ALA GLY SEQRES 36 B 520 LEU PRO LYS GLY TYR GLU ASP CYS PRO PHE TYR PHE TRP SEQRES 37 B 520 PHE ASN THR SER PHE VAL GLU ASN TYR ARG LEU PHE LEU SEQRES 38 B 520 SER ARG GLU GLU LEU ASP ASN PRO HIS LYS PRO LYS THR SEQRES 39 B 520 TRP ASP ILE TYR LYS GLU ASP PHE GLY VAL THR LEU SER SEQRES 40 B 520 PHE THR GLU PRO SER ASN SER LEU GLU VAL LEU PHE GLN HELIX 1 AA1 GLN A 195 PHE A 199 5 5 HELIX 2 AA2 ILE A 228 HIS A 239 1 12 HELIX 3 AA3 SER A 275 ASP A 293 1 19 HELIX 4 AA4 GLY A 307 ASP A 321 1 15 HELIX 5 AA5 THR A 351 GLN A 367 1 17 HELIX 6 AA6 GLY A 459 CYS A 463 5 5 HELIX 7 AA7 SER A 472 VAL A 474 5 3 HELIX 8 AA8 LYS A 491 TRP A 495 5 5 HELIX 9 AA9 GLN B 195 PHE B 199 5 5 HELIX 10 AB1 ILE B 228 HIS B 239 1 12 HELIX 11 AB2 SER B 275 ASP B 293 1 19 HELIX 12 AB3 GLY B 307 ASP B 321 1 15 HELIX 13 AB4 THR B 351 GLN B 367 1 17 HELIX 14 AB5 GLY B 459 CYS B 463 5 5 HELIX 15 AB6 SER B 472 VAL B 474 5 3 HELIX 16 AB7 LYS B 491 TRP B 495 5 5 SHEET 1 AA1 5 THR A 204 THR A 207 0 SHEET 2 AA1 5 VAL A 210 SER A 214 -1 O ALA A 212 N THR A 204 SHEET 3 AA1 5 VAL A 297 SER A 302 1 O ILE A 298 N ILE A 211 SHEET 4 AA1 5 TYR A 243 ASN A 247 1 N PHE A 246 O ALA A 299 SHEET 5 AA1 5 VAL A 263 ARG A 265 1 O GLU A 264 N ASN A 247 SHEET 1 AA2 2 PRO A 216 SER A 217 0 SHEET 2 AA2 2 ASN A 226 PRO A 227 1 O ASN A 226 N SER A 217 SHEET 1 AA3 4 THR A 422 VAL A 423 0 SHEET 2 AA3 4 ILE A 434 SER A 435 -1 O SER A 435 N THR A 422 SHEET 3 AA3 4 SER A 377 HIS A 386 -1 N ILE A 383 O ILE A 434 SHEET 4 AA3 4 ILE A 441 THR A 443 -1 O VAL A 442 N LEU A 378 SHEET 1 AA4 5 THR A 422 VAL A 423 0 SHEET 2 AA4 5 ILE A 434 SER A 435 -1 O SER A 435 N THR A 422 SHEET 3 AA4 5 SER A 377 HIS A 386 -1 N ILE A 383 O ILE A 434 SHEET 4 AA4 5 GLY A 503 THR A 509 -1 O THR A 505 N ARG A 384 SHEET 5 AA4 5 ARG A 478 SER A 482 -1 N LEU A 479 O LEU A 506 SHEET 1 AA5 4 LEU A 409 VAL A 414 0 SHEET 2 AA5 4 LYS A 400 ILE A 404 -1 N ILE A 403 O PHE A 411 SHEET 3 AA5 4 ASP A 445 GLU A 451 -1 O GLU A 451 N LYS A 400 SHEET 4 AA5 4 PHE A 465 TYR A 466 -1 O PHE A 465 N PHE A 450 SHEET 1 AA6 4 LEU A 409 VAL A 414 0 SHEET 2 AA6 4 LYS A 400 ILE A 404 -1 N ILE A 403 O PHE A 411 SHEET 3 AA6 4 ASP A 445 GLU A 451 -1 O GLU A 451 N LYS A 400 SHEET 4 AA6 4 PHE A 469 ASN A 470 -1 O PHE A 469 N VAL A 446 SHEET 1 AA7 5 LEU B 203 THR B 207 0 SHEET 2 AA7 5 VAL B 210 SER B 214 -1 O ALA B 212 N THR B 204 SHEET 3 AA7 5 VAL B 297 SER B 302 1 O ILE B 300 N MET B 213 SHEET 4 AA7 5 TYR B 243 ASN B 247 1 N PHE B 246 O ALA B 299 SHEET 5 AA7 5 VAL B 263 ARG B 265 1 O GLU B 264 N ASN B 247 SHEET 1 AA8 2 PRO B 216 SER B 217 0 SHEET 2 AA8 2 ASN B 226 PRO B 227 1 O ASN B 226 N SER B 217 SHEET 1 AA9 4 THR B 422 VAL B 423 0 SHEET 2 AA9 4 ILE B 434 SER B 435 -1 O SER B 435 N THR B 422 SHEET 3 AA9 4 SER B 377 HIS B 386 -1 N ILE B 383 O ILE B 434 SHEET 4 AA9 4 ILE B 441 THR B 443 -1 O VAL B 442 N LEU B 378 SHEET 1 AB1 5 THR B 422 VAL B 423 0 SHEET 2 AB1 5 ILE B 434 SER B 435 -1 O SER B 435 N THR B 422 SHEET 3 AB1 5 SER B 377 HIS B 386 -1 N ILE B 383 O ILE B 434 SHEET 4 AB1 5 GLY B 503 THR B 509 -1 O GLY B 503 N HIS B 386 SHEET 5 AB1 5 ARG B 478 SER B 482 -1 N LEU B 479 O LEU B 506 SHEET 1 AB2 4 LEU B 409 VAL B 414 0 SHEET 2 AB2 4 LEU B 399 ILE B 404 -1 N ILE B 403 O PHE B 411 SHEET 3 AB2 4 ASP B 445 SER B 452 -1 O GLU B 451 N LYS B 400 SHEET 4 AB2 4 PHE B 465 TYR B 466 -1 O PHE B 465 N PHE B 450 SHEET 1 AB3 4 LEU B 409 VAL B 414 0 SHEET 2 AB3 4 LEU B 399 ILE B 404 -1 N ILE B 403 O PHE B 411 SHEET 3 AB3 4 ASP B 445 SER B 452 -1 O GLU B 451 N LYS B 400 SHEET 4 AB3 4 PHE B 469 ASN B 470 -1 O PHE B 469 N VAL B 446 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000